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Editing gene: TPT1 (CAeditome ID:7178)

Gene summary for TPT1

Gene summary

Gene information	Gene symbol	TPT1
	Gene ID	7178
	Gene name	tumor protein, translationally-controlled 1
	Synonyms	HRF\|TCTP\|p02\|p23
	Cytomap	13q14.13
	Type of gene	protein-coding
	Description	translationally-controlled tumor proteinfortilinhistamine-releasing factor
	Modification date	20210518
	UniProtAcc	P13693
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
TPT1	GO:0005509	Translationally-controlled tumor protein	15162379
TPT1	GO:0005509	Translationally-controlled tumor protein	15958728
TPT1	GO:0000922	Translationally-controlled tumor protein	15162379
TPT1	GO:0005615	Translationally-controlled tumor protein	15319436
TPT1	GO:0005634	Translationally-controlled tumor protein	11598139
TPT1	GO:0005737	Translationally-controlled tumor protein	15162379
TPT1	GO:0005771	Translationally-controlled tumor protein	15319436
TPT1	GO:0005829	Translationally-controlled tumor protein	0000052
TPT1	GO:0005881	Translationally-controlled tumor protein	15162379

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RNA A-to-I events for TPT1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000133112.15

RNA A-to-I editing events in Cancer.

CAediting_961576(45333992, -), CAediting_961577(45333997, -), CAediting_961578(45334000, -), CAediting_961579(45334002, -), CAediting_961580(45334029, -), CAediting_961581(45334031, -), CAediting_961582(45334037, -), CAediting_961583(45334048, -), CAediting_961584(45334050, -), CAediting_961585(45334055, -), CAediting_961586(45334072, -), CAediting_961587(45334091, -), CAediting_961588(45334092, -), CAediting_961589(45334095, -), CAediting_961590(45334096, -), CAediting_961591(45334097, -), CAediting_961592(45334099, -), CAediting_961593(45334100, -), CAediting_961594(45334111, -), CAediting_961595(45334128, -), CAediting_961596(45334130, -), CAediting_961597(45334144, -), CAediting_961598(45334155, -), CAediting_961599(45334162, -), CAediting_961600(45334185, -), CAediting_961601(45334193, -), CAediting_961602(45334203, -), CAediting_961603(45334204, -), CAediting_961604(45334207, -), CAediting_961605(45335697, -), CAediting_961606(45335698, -), CAediting_961607(45335712, -), CAediting_961608(45335723, -), CAediting_961609(45335749, -), CAediting_961610(45336072, -), CAediting_961611(45336085, -), CAediting_961612(45336087, -), CAediting_961613(45336090, -), CAediting_961614(45336154, -), CAediting_961615(45336189, -), CAediting_961616(45336203, -), CAediting_961617(45336215, -), CAediting_961618(45336263, -), CAediting_961619(45336271, -), CAediting_961620(45336275, -), CAediting_961621(45336288, -), CAediting_961622(45338159, -), CAediting_961623(45338191, -), CAediting_961624(45338216, -), CAediting_961625(45338218, -), CAediting_961626(45338243, -), CAediting_961627(45338248, -), CAediting_961628(45338257, -), CAediting_961629(45338264, -), CAediting_961630(45338386, -),

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RNA editing positional annotations for TPT1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_961576	chr13_45333992_-	UTR3
CAediting_961577	chr13_45333997_-	UTR3
CAediting_961578	chr13_45334000_-	UTR3
CAediting_961579	chr13_45334002_-	UTR3
CAediting_961580	chr13_45334029_-	UTR3
CAediting_961581	chr13_45334031_-	UTR3
CAediting_961582	chr13_45334037_-	UTR3
CAediting_961583	chr13_45334048_-	UTR3
CAediting_961584	chr13_45334050_-	UTR3
CAediting_961585	chr13_45334055_-	UTR3
CAediting_961586	chr13_45334072_-	UTR3
CAediting_961587	chr13_45334091_-	UTR3
CAediting_961588	chr13_45334092_-	UTR3
CAediting_961589	chr13_45334095_-	UTR3
CAediting_961590	chr13_45334096_-	UTR3
CAediting_961591	chr13_45334097_-	UTR3
CAediting_961592	chr13_45334099_-	UTR3
CAediting_961593	chr13_45334100_-	UTR3
CAediting_961594	chr13_45334111_-	UTR3
CAediting_961595	chr13_45334128_-	UTR3
CAediting_961596	chr13_45334130_-	UTR3
CAediting_961597	chr13_45334144_-	UTR3
CAediting_961598	chr13_45334155_-	UTR3
CAediting_961599	chr13_45334162_-	UTR3
CAediting_961600	chr13_45334185_-	UTR3
CAediting_961601	chr13_45334193_-	UTR3
CAediting_961602	chr13_45334203_-	UTR3
CAediting_961603	chr13_45334204_-	UTR3
CAediting_961604	chr13_45334207_-	UTR3
CAediting_961605	chr13_45335697_-	UTR3
CAediting_961606	chr13_45335698_-	UTR3
CAediting_961607	chr13_45335712_-	UTR3
CAediting_961608	chr13_45335723_-	UTR3
CAediting_961609	chr13_45335749_-	UTR3
CAediting_961610	chr13_45336072_-	UTR3
CAediting_961611	chr13_45336085_-	UTR3
CAediting_961612	chr13_45336087_-	UTR3
CAediting_961613	chr13_45336090_-	UTR3
CAediting_961614	chr13_45336154_-	UTR3
CAediting_961615	chr13_45336189_-	UTR3
CAediting_961616	chr13_45336203_-	UTR3
CAediting_961617	chr13_45336215_-	UTR3
CAediting_961618	chr13_45336263_-	UTR3
CAediting_961619	chr13_45336271_-	UTR3
CAediting_961620	chr13_45336275_-	UTR3
CAediting_961621	chr13_45336288_-	UTR3
CAediting_961622	chr13_45338159_-	ncRNA_intronic
CAediting_961623	chr13_45338191_-	ncRNA_intronic
CAediting_961624	chr13_45338216_-	ncRNA_intronic
CAediting_961625	chr13_45338218_-	ncRNA_intronic
CAediting_961626	chr13_45338243_-	ncRNA_intronic
CAediting_961627	chr13_45338248_-	ncRNA_intronic
CAediting_961628	chr13_45338257_-	ncRNA_intronic
CAediting_961629	chr13_45338264_-	ncRNA_intronic
CAediting_961630	chr13_45338386_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_961576	chr13_45333992_-	SINE	Alu	AluJr
CAediting_961577	chr13_45333997_-	SINE	Alu	AluJr
CAediting_961578	chr13_45334000_-	SINE	Alu	AluJr
CAediting_961579	chr13_45334002_-	SINE	Alu	AluJr
CAediting_961580	chr13_45334029_-	SINE	Alu	AluJr
CAediting_961581	chr13_45334031_-	SINE	Alu	AluJr
CAediting_961582	chr13_45334037_-	SINE	Alu	AluJr
CAediting_961583	chr13_45334048_-	SINE	Alu	AluJr
CAediting_961584	chr13_45334050_-	SINE	Alu	AluJr
CAediting_961585	chr13_45334055_-	SINE	Alu	AluJr
CAediting_961586	chr13_45334072_-	SINE	Alu	AluJr
CAediting_961587	chr13_45334091_-	SINE	Alu	AluJr
CAediting_961588	chr13_45334092_-	SINE	Alu	AluJr
CAediting_961589	chr13_45334095_-	SINE	Alu	AluJr
CAediting_961590	chr13_45334096_-	SINE	Alu	AluJr
CAediting_961591	chr13_45334097_-	SINE	Alu	AluJr
CAediting_961592	chr13_45334099_-	SINE	Alu	AluJr
CAediting_961593	chr13_45334100_-	SINE	Alu	AluJr
CAediting_961594	chr13_45334111_-	SINE	Alu	AluJr
CAediting_961595	chr13_45334128_-	SINE	Alu	AluJr
CAediting_961596	chr13_45334130_-	SINE	Alu	AluJr
CAediting_961597	chr13_45334144_-	SINE	Alu	AluJr
CAediting_961598	chr13_45334155_-	SINE	Alu	AluJr
CAediting_961599	chr13_45334162_-	SINE	Alu	AluJr
CAediting_961600	chr13_45334185_-	SINE	Alu	AluJr
CAediting_961601	chr13_45334193_-	SINE	Alu	AluJr
CAediting_961602	chr13_45334203_-	SINE	Alu	AluJr
CAediting_961603	chr13_45334204_-	SINE	Alu	AluJr
CAediting_961604	chr13_45334207_-	SINE	Alu	AluJr
CAediting_961605	chr13_45335697_-	SINE	Alu	AluJr
CAediting_961606	chr13_45335698_-	SINE	Alu	AluJr
CAediting_961607	chr13_45335712_-	SINE	Alu	AluJr
CAediting_961608	chr13_45335723_-	SINE	Alu	AluJr
CAediting_961609	chr13_45335749_-	SINE	Alu	AluJr
CAediting_961610	chr13_45336072_-	SINE	Alu	AluJb
CAediting_961611	chr13_45336085_-	SINE	Alu	AluJb
CAediting_961612	chr13_45336087_-	SINE	Alu	AluJb
CAediting_961613	chr13_45336090_-	SINE	Alu	AluJb
CAediting_961614	chr13_45336154_-	SINE	Alu	AluJb
CAediting_961615	chr13_45336189_-	SINE	Alu	AluJb
CAediting_961616	chr13_45336203_-	SINE	Alu	AluJb
CAediting_961617	chr13_45336215_-	SINE	Alu	AluJb
CAediting_961618	chr13_45336263_-	SINE	Alu	AluJb
CAediting_961619	chr13_45336271_-	SINE	Alu	AluJb
CAediting_961620	chr13_45336275_-	SINE	Alu	AluJb
CAediting_961621	chr13_45336288_-	SINE	Alu	AluJb
CAediting_961622	chr13_45338159_-	SINE	Alu	AluSx1
CAediting_961623	chr13_45338191_-	SINE	Alu	AluSx1
CAediting_961624	chr13_45338216_-	SINE	Alu	AluSx1
CAediting_961625	chr13_45338218_-	SINE	Alu	AluSx1
CAediting_961626	chr13_45338243_-	SINE	Alu	AluSx1
CAediting_961627	chr13_45338248_-	SINE	Alu	AluSx1
CAediting_961628	chr13_45338257_-	SINE	Alu	AluSx1
CAediting_961629	chr13_45338264_-	SINE	Alu	AluSx1
CAediting_961630	chr13_45338386_-	SINE	Alu	AluSx1

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RNA A-to-I editing events in the alternative splicing sites for TPT1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000133112.15.TPT1.

Correlation between RNA A-to-I editing and PSI for ENSG00000133112.15.TPT1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TPT1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TPT1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TPT1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_961582	chr13_45334037_-	ENSG00000133112.15	ENST00000530705	hsa-miR-711	45334033	45334039	7mer-m8	45334032	45334053	146.00	-17.92
CAediting_961582	chr13_45334037_-	ENSG00000133112.15	ENST00000616577	hsa-miR-711	45334033	45334039	7mer-m8	45334032	45334053	146.00	-17.92
CAediting_961584	chr13_45334050_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4267	45334050	45334056	7mer-m8	45334049	45334064	154.00	-24.44
CAediting_961584	chr13_45334050_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6749-3p	45334045	45334051	7mer-m8	45334044	45334063	152.00	-23.05
CAediting_961584	chr13_45334050_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7977	45334048	45334054	7mer-m8	45334047	45334066	144.00	-21.59
CAediting_961584	chr13_45334050_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4267	45334050	45334056	7mer-m8	45334049	45334064	154.00	-24.44
CAediting_961584	chr13_45334050_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6749-3p	45334045	45334051	7mer-m8	45334044	45334063	152.00	-23.05
CAediting_961584	chr13_45334050_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7977	45334048	45334054	7mer-m8	45334047	45334066	144.00	-21.59
CAediting_961585	chr13_45334055_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4690-3p	45334050	45334057	8mer-1a	45334050	45334070	156.00	-27.01
CAediting_961585	chr13_45334055_-	ENSG00000133112.15	ENST00000530705	hsa-miR-5685	45334050	45334057	8mer-1a	45334050	45334071	154.00	-21.84
CAediting_961585	chr13_45334055_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4690-3p	45334050	45334057	8mer-1a	45334050	45334070	156.00	-27.01
CAediting_961585	chr13_45334055_-	ENSG00000133112.15	ENST00000616577	hsa-miR-5685	45334050	45334057	8mer-1a	45334050	45334071	154.00	-21.84
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6762-5p	45334179	45334186	8mer-1a	45334179	45334204	154.00	-28.23
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6845-5p	45334179	45334186	8mer-1a	45334179	45334199	154.00	-25.19
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6762-5p	45334179	45334186	8mer-1a	45334179	45334204	154.00	-28.23
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6845-5p	45334179	45334186	8mer-1a	45334179	45334199	154.00	-25.19
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6729-3p	45334043	45334049	7mer-m8	45334042	45334067	148.00	-26.00
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6795-3p	45334045	45334051	7mer-1a	45334045	45334065	143.00	-24.04
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6826-3p	45334045	45334051	7mer-m8	45334044	45334066	146.00	-20.00
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6729-3p	45334043	45334049	7mer-m8	45334042	45334067	148.00	-26.00
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6795-3p	45334045	45334051	7mer-1a	45334045	45334065	143.00	-24.04
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6826-3p	45334045	45334051	7mer-m8	45334044	45334066	146.00	-20.00
CAediting_961587	chr13_45334091_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3129-3p	45334089	45334095	7mer-m8	45334088	45334109	144.00	-5.34
CAediting_961587	chr13_45334091_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4735-5p	45334091	45334097	7mer-m8	45334090	45334111	140.00	-7.16
CAediting_961587	chr13_45334091_-	ENSG00000133112.15	ENST00000530705	hsa-miR-5583-5p	45334089	45334095	7mer-m8	45334088	45334109	142.00	-4.54
CAediting_961587	chr13_45334091_-	ENSG00000133112.15	ENST00000530705	hsa-miR-5583-5p	45334089	45334095	7mer-m8	45334088	45334109	142.00	-4.54
CAediting_961587	chr13_45334091_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3129-3p	45334089	45334095	7mer-m8	45334088	45334109	144.00	-5.34
CAediting_961587	chr13_45334091_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4735-5p	45334091	45334097	7mer-m8	45334090	45334111	140.00	-7.16
CAediting_961587	chr13_45334091_-	ENSG00000133112.15	ENST00000616577	hsa-miR-5583-5p	45334089	45334095	7mer-m8	45334088	45334109	142.00	-4.54
CAediting_961587	chr13_45334091_-	ENSG00000133112.15	ENST00000616577	hsa-miR-5583-5p	45334089	45334095	7mer-m8	45334088	45334109	142.00	-4.54
CAediting_961594	chr13_45334111_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4716-5p	45334110	45334116	7mer-m8	45334109	45334130	148.00	-15.26
CAediting_961594	chr13_45334111_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4716-5p	45334110	45334116	7mer-m8	45334109	45334130	148.00	-15.26
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3176	45334124	45334130	7mer-m8	45334123	45334141	156.00	-23.27
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3922-3p	45334124	45334130	7mer-m8	45334123	45334147	157.00	-22.86
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6878-3p	45334125	45334131	7mer-m8	45334124	45334146	150.00	-24.79
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3176	45334124	45334130	7mer-m8	45334123	45334141	156.00	-23.27
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3922-3p	45334124	45334130	7mer-m8	45334123	45334147	157.00	-22.86
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6878-3p	45334125	45334131	7mer-m8	45334124	45334146	150.00	-24.79
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1224-3p	45334157	45334162	6mer	45334156	45334176	140.00	-26.54
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3130-5p	45334160	45334165	6mer	45334159	45334179	144.00	-27.14
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3130-5p	45334160	45334165	6mer	45334159	45334179	144.00	-27.14
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000530705	hsa-miR-500b-3p	45334159	45334165	7mer-m8	45334158	45334179	145.00	-20.92
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6849-3p	45334162	45334168	7mer-m8	45334161	45334180	141.00	-20.85
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1224-3p	45334157	45334162	6mer	45334156	45334176	140.00	-26.54
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3130-5p	45334160	45334165	6mer	45334159	45334179	144.00	-27.14
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3130-5p	45334160	45334165	6mer	45334159	45334179	144.00	-27.14
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000616577	hsa-miR-500b-3p	45334159	45334165	7mer-m8	45334158	45334179	145.00	-20.92
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6849-3p	45334162	45334168	7mer-m8	45334161	45334180	141.00	-20.85
CAediting_961601	chr13_45334193_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3622a-5p	45334188	45334194	7mer-m8	45334187	45334206	152.00	-25.83
CAediting_961601	chr13_45334193_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3622a-5p	45334188	45334194	7mer-m8	45334187	45334206	152.00	-25.83
CAediting_961605	chr13_45335697_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3622a-3p	45335693	45335700	8mer-1a	45335693	45335714	140.00	-15.97
CAediting_961605	chr13_45335697_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3622b-3p	45335693	45335700	8mer-1a	45335693	45335713	148.00	-19.66
CAediting_961605	chr13_45335697_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4649-3p	45335697	45335703	7mer-m8	45335696	45335716	150.00	-18.89
CAediting_961605	chr13_45335697_-	ENSG00000133112.15	ENST00000530705	hsa-miR-544b	45335696	45335702	7mer-m8	45335695	45335716	155.00	-17.91
CAediting_961605	chr13_45335697_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3622a-3p	45335693	45335700	8mer-1a	45335693	45335714	140.00	-15.97
CAediting_961605	chr13_45335697_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3622b-3p	45335693	45335700	8mer-1a	45335693	45335713	148.00	-19.66
CAediting_961605	chr13_45335697_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4649-3p	45335697	45335703	7mer-m8	45335696	45335716	150.00	-18.89
CAediting_961605	chr13_45335697_-	ENSG00000133112.15	ENST00000616577	hsa-miR-544b	45335696	45335702	7mer-m8	45335695	45335716	155.00	-17.91
CAediting_961607	chr13_45335712_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3180-5p	45335709	45335716	8mer-1a	45335709	45335734	162.00	-23.17
CAediting_961607	chr13_45335712_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3180-5p	45335709	45335716	8mer-1a	45335709	45335734	162.00	-23.17
CAediting_961607	chr13_45335712_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3180-5p	45335709	45335716	8mer-1a	45335709	45335734	162.00	-23.17
CAediting_961607	chr13_45335712_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3180-5p	45335709	45335716	8mer-1a	45335709	45335734	162.00	-23.17
CAediting_961607	chr13_45335712_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3180-5p	45335709	45335716	8mer-1a	45335709	45335734	162.00	-23.17
CAediting_961607	chr13_45335712_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3180-5p	45335709	45335716	8mer-1a	45335709	45335734	162.00	-23.17
CAediting_961608	chr13_45335723_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3940-3p	45335719	45335725	7mer-m8	45335718	45335739	151.00	-23.19
CAediting_961608	chr13_45335723_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3940-3p	45335719	45335725	7mer-m8	45335718	45335739	151.00	-23.19
CAediting_961612	chr13_45336087_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4780	45336087	45336093	7mer-m8	45336086	45336107	157.00	-21.41
CAediting_961612	chr13_45336087_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4780	45336087	45336093	7mer-m8	45336086	45336107	157.00	-21.41
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1199-5p	45336090	45336096	7mer-m8	45336089	45336108	156.00	-28.57
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-125a-5p	45336087	45336094	8mer-1a	45336087	45336110	147.00	-22.59
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-125b-5p	45336087	45336094	8mer-1a	45336087	45336108	155.00	-23.20
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-125b-5p	45336087	45336094	8mer-1a	45336087	45336108	155.00	-23.20
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4319	45336087	45336094	8mer-1a	45336087	45336103	149.00	-22.07
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-670-5p	45336087	45336093	7mer-m8	45336086	45336105	153.00	-19.70
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6751-3p	45336090	45336096	7mer-m8	45336089	45336109	141.00	-13.15
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6867-3p	45336085	45336091	7mer-m8	45336084	45336104	140.00	-18.68
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7113-3p	45336085	45336092	8mer-1a	45336085	45336109	143.00	-19.59
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1199-5p	45336090	45336096	7mer-m8	45336089	45336108	156.00	-28.57
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-125a-5p	45336087	45336094	8mer-1a	45336087	45336110	147.00	-22.59
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-125b-5p	45336087	45336094	8mer-1a	45336087	45336108	155.00	-23.20
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-125b-5p	45336087	45336094	8mer-1a	45336087	45336108	155.00	-23.20
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4319	45336087	45336094	8mer-1a	45336087	45336103	149.00	-22.07
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-670-5p	45336087	45336093	7mer-m8	45336086	45336105	153.00	-19.70
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6751-3p	45336090	45336096	7mer-m8	45336089	45336109	141.00	-13.15
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6867-3p	45336085	45336091	7mer-m8	45336084	45336104	140.00	-18.68
CAediting_961613	chr13_45336090_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7113-3p	45336085	45336092	8mer-1a	45336085	45336109	143.00	-19.59
CAediting_961616	chr13_45336203_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6765-5p	45336198	45336204	7mer-m8	45336197	45336218	155.00	-25.43
CAediting_961616	chr13_45336203_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6765-5p	45336198	45336204	7mer-m8	45336197	45336218	155.00	-25.43
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3940-3p	45336267	45336273	7mer-m8	45336266	45336287	150.00	-19.94
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3940-3p	45336267	45336273	7mer-m8	45336266	45336287	150.00	-19.94
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4486	45336270	45336276	7mer-m8	45336269	45336287	146.00	-22.99
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4486	45336270	45336276	7mer-m8	45336269	45336287	146.00	-22.99
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000530705	hsa-miR-18a-3p	45336283	45336288	6mer	45336282	45336304	157.00	-28.73
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1913	45336283	45336289	7mer-m8	45336282	45336302	142.00	-22.16
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000530705	hsa-miR-5699-5p	45336284	45336291	8mer-1a	45336284	45336305	147.00	-15.01
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000616577	hsa-miR-18a-3p	45336283	45336288	6mer	45336282	45336304	157.00	-28.73
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1913	45336283	45336289	7mer-m8	45336282	45336302	142.00	-22.16
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000616577	hsa-miR-5699-5p	45336284	45336291	8mer-1a	45336284	45336305	147.00	-15.01
CAediting_961623	chr13_45338191_-	ENSG00000133112.15	ENST00000309246	hsa-miR-572	45338189	45338195	7mer-m8	45338188	45338206	152.00	-25.14
CAediting_961624	chr13_45338216_-	ENSG00000133112.15	ENST00000309246	hsa-miR-4720-3p	45338215	45338221	7mer-m8	45338214	45338234	148.00	-10.08
CAediting_961627	chr13_45338248_-	ENSG00000133112.15	ENST00000309246	hsa-miR-1207-3p	45338247	45338254	8mer-1a	45338247	45338264	140.00	-14.68
CAediting_961628	chr13_45338257_-	ENSG00000133112.15	ENST00000309246	hsa-miR-8052	45338252	45338258	7mer-1a	45338252	45338272	141.00	-21.06
CAediting_961629	chr13_45338264_-	ENSG00000133112.15	ENST00000309246	hsa-miR-6789-3p	45338262	45338268	7mer-m8	45338261	45338284	154.00	-26.61
CAediting_961626	chr13_45338243_-	ENSG00000133112.15	ENST00000309246	hsa-miR-10398-5p	45338238	45338244	7mer-m8	45338237	45338259	141.00	-14.65
CAediting_961630	chr13_45338386_-	ENSG00000133112.15	ENST00000309246	hsa-miR-371a-3p	45338381	45338387	7mer-m8	45338380	45338402	145.00	-17.05

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1262	45336271	45336277	7mer-m8	45336270	45336296	142	-17.42
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1262	45336271	45336277	7mer-m8	45336270	45336296	142	-17.42
CAediting_961609	chr13_45335749_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1283	45335748	45335754	7mer-m8	45335747	45335768	147	-11.73
CAediting_961609	chr13_45335749_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1283	45335748	45335754	7mer-m8	45335747	45335768	147	-11.73
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1285-3p	45336153	45336159	7mer-m8	45336152	45336173	140	-16.66
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000530705	hsa-miR-1285-3p	45336153	45336159	7mer-m8	45336152	45336173	140	-16.66
CAediting_961617	chr13_45336215_-	ENSG00000133112.15	ENST00000530705	hsa-miR-135a-5p	45336210	45336216	7mer-m8	45336209	45336231	140	-10.26
CAediting_961617	chr13_45336215_-	ENSG00000133112.15	ENST00000530705	hsa-miR-135a-5p	45336210	45336216	7mer-m8	45336209	45336231	140	-10.26
CAediting_961617	chr13_45336215_-	ENSG00000133112.15	ENST00000530705	hsa-miR-135b-5p	45336210	45336216	7mer-m8	45336209	45336231	140	-11.84
CAediting_961576	chr13_45333992_-	ENSG00000133112.15	ENST00000530705	hsa-miR-143-5p	45333991	45333997	7mer-m8	45333990	45334012	155	-17.74
CAediting_961580	chr13_45334029_-	ENSG00000133112.15	ENST00000530705	hsa-miR-216b-5p	45334025	45334031	7mer-m8	45334024	45334046	147	-12.78
CAediting_961602	chr13_45334203_-	ENSG00000133112.15	ENST00000530705	hsa-miR-218-1-3p	45334200	45334206	7mer-m8	45334199	45334221	141	-13.45
CAediting_961603	chr13_45334204_-	ENSG00000133112.15	ENST00000530705	hsa-miR-218-1-3p	45334200	45334206	7mer-m8	45334199	45334221	141	-13.45
CAediting_961602	chr13_45334203_-	ENSG00000133112.15	ENST00000530705	hsa-miR-218-2-3p	45334199	45334205	7mer-m8	45334198	45334220	146	-14.49
CAediting_961603	chr13_45334204_-	ENSG00000133112.15	ENST00000530705	hsa-miR-218-2-3p	45334199	45334205	7mer-m8	45334198	45334220	146	-14.49
CAediting_961576	chr13_45333992_-	ENSG00000133112.15	ENST00000530705	hsa-miR-301a-3p	45333990	45333995	6mer	45333989	45334011	145	-16.62
CAediting_961576	chr13_45333992_-	ENSG00000133112.15	ENST00000530705	hsa-miR-301b-3p	45333990	45333995	6mer	45333989	45334011	145	-16.35
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3187-5p	45336153	45336159	7mer-m8	45336152	45336179	151	-22.57
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3663-5p	45334124	45334130	7mer-m8	45334123	45334142	144	-20.26
CAediting_961596	chr13_45334130_-	ENSG00000133112.15	ENST00000530705	hsa-miR-371a-5p	45334128	45334135	8mer-1a	45334128	45334147	146	-15.86
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000530705	hsa-miR-371b-5p	45336287	45336293	7mer-m8	45336286	45336307	143	-12.06
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000530705	hsa-miR-373-5p	45336287	45336293	7mer-m8	45336286	45336309	147	-13.53
CAediting_961581	chr13_45334031_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3917	45334029	45334036	8mer-1a	45334029	45334049	152	-21.01
CAediting_961610	chr13_45336072_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4478	45336068	45336074	7mer-m8	45336067	45336083	154	-23.4
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4489	45334179	45334186	8mer-1a	45334179	45334197	148	-20.38
CAediting_961594	chr13_45334111_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4685-3p	45334105	45334111	7mer-1a	45334105	45334127	140	-30.54
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4701-3p	45336271	45336277	7mer-m8	45336270	45336289	152	-20.01
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4701-3p	45336271	45336277	7mer-m8	45336270	45336289	152	-20.01
CAediting_961588	chr13_45334092_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4775	45334091	45334098	8mer-1a	45334091	45334109	155	-11.92
CAediting_961589	chr13_45334095_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4775	45334091	45334098	8mer-1a	45334091	45334109	155	-11.92
CAediting_961590	chr13_45334096_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4775	45334091	45334098	8mer-1a	45334091	45334109	155	-11.92
CAediting_961591	chr13_45334097_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4775	45334091	45334098	8mer-1a	45334091	45334109	155	-11.92
CAediting_961604	chr13_45334207_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4794	45334206	45334212	7mer-m8	45334205	45334227	147	-17.18
CAediting_961610	chr13_45336072_-	ENSG00000133112.15	ENST00000530705	hsa-miR-485-5p	45336067	45336073	7mer-m8	45336066	45336086	144	-16.49
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000530705	hsa-miR-512-5p	45334160	45334166	7mer-m8	45334159	45334181	153	-23.99
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000530705	hsa-miR-512-5p	45334160	45334166	7mer-m8	45334159	45334181	153	-23.99
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000530705	hsa-miR-5196-3p	45334043	45334049	7mer-m8	45334042	45334066	144	-21.73
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000530705	hsa-miR-548v	45334183	45334189	7mer-m8	45334182	45334203	143	-12.52
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000530705	hsa-miR-612	45336153	45336159	7mer-m8	45336152	45336177	148	-24.29
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6131	45334123	45334129	7mer-m8	45334122	45334140	140	-16.72
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000530705	hsa-miR-616-5p	45336287	45336293	7mer-m8	45336286	45336308	153	-14.85
CAediting_961586	chr13_45334072_-	ENSG00000133112.15	ENST00000530705	hsa-miR-619-5p	45334071	45334076	6mer	45334070	45334089	151	-29.49
CAediting_961604	chr13_45334207_-	ENSG00000133112.15	ENST00000530705	hsa-miR-664a-5p	45334206	45334212	7mer-m8	45334205	45334229	145	-18.2
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6736-5p	45336271	45336277	7mer-m8	45336270	45336289	152	-23.42
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6736-5p	45336271	45336277	7mer-m8	45336270	45336289	152	-23.42
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6742-3p	45336269	45336275	7mer-m8	45336268	45336286	148	-19.21
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6776-5p	45336270	45336276	7mer-m8	45336269	45336287	140	-18.51
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6776-5p	45336270	45336276	7mer-m8	45336269	45336287	140	-18.51
CAediting_961597	chr13_45334144_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6790-3p	45334139	45334145	7mer-1a	45334139	45334162	148	-33.32
CAediting_961601	chr13_45334193_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6807-5p	45334193	45334199	7mer-m8	45334192	45334212	146	-21.18
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6843-3p	45334125	45334131	7mer-m8	45334124	45334143	152	-20.48
CAediting_961596	chr13_45334130_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6843-3p	45334125	45334131	7mer-m8	45334124	45334143	152	-20.48
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6848-3p	45334125	45334131	7mer-m8	45334124	45334141	142	-15.32
CAediting_961596	chr13_45334130_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6848-3p	45334125	45334131	7mer-m8	45334124	45334141	142	-15.32
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6860	45336153	45336159	7mer-m8	45336152	45336174	154	-22.74
CAediting_961594	chr13_45334111_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6883-3p	45334107	45334113	7mer-m8	45334106	45334127	147	-15.17
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7111-3p	45334045	45334051	7mer-m8	45334044	45334065	148	-19.92
CAediting_961584	chr13_45334050_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7111-3p	45334045	45334051	7mer-m8	45334044	45334065	148	-19.92
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7151-3p	45334185	45334191	7mer-m8	45334184	45334207	147	-25.49
CAediting_961610	chr13_45336072_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7160-5p	45336070	45336076	7mer-m8	45336069	45336087	154	-21.55
CAediting_961611	chr13_45336085_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7161-3p	45336082	45336087	6mer	45336081	45336110	148	-22.29
CAediting_961612	chr13_45336087_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7161-3p	45336082	45336087	6mer	45336081	45336110	148	-22.29
CAediting_961610	chr13_45336072_-	ENSG00000133112.15	ENST00000530705	hsa-miR-7162-3p	45336071	45336077	7mer-m8	45336070	45336087	153	-22.62
CAediting_961615	chr13_45336189_-	ENSG00000133112.15	ENST00000530705	hsa-miR-921	45336189	45336195	7mer-m8	45336188	45336210	147	-16.66
CAediting_961608	chr13_45335723_-	ENSG00000133112.15	ENST00000530705	hsa-miR-939-3p	45335721	45335727	7mer-m8	45335720	45335741	148	-19.97
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1262	45336271	45336277	7mer-m8	45336270	45336296	142	-17.42
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1262	45336271	45336277	7mer-m8	45336270	45336296	142	-17.42
CAediting_961609	chr13_45335749_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1283	45335748	45335754	7mer-m8	45335747	45335768	147	-11.73
CAediting_961609	chr13_45335749_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1283	45335748	45335754	7mer-m8	45335747	45335768	147	-11.73
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1285-3p	45336153	45336159	7mer-m8	45336152	45336173	140	-16.66
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000616577	hsa-miR-1285-3p	45336153	45336159	7mer-m8	45336152	45336173	140	-16.66
CAediting_961617	chr13_45336215_-	ENSG00000133112.15	ENST00000616577	hsa-miR-135a-5p	45336210	45336216	7mer-m8	45336209	45336231	140	-10.26
CAediting_961617	chr13_45336215_-	ENSG00000133112.15	ENST00000616577	hsa-miR-135a-5p	45336210	45336216	7mer-m8	45336209	45336231	140	-10.26
CAediting_961617	chr13_45336215_-	ENSG00000133112.15	ENST00000616577	hsa-miR-135b-5p	45336210	45336216	7mer-m8	45336209	45336231	140	-11.84
CAediting_961576	chr13_45333992_-	ENSG00000133112.15	ENST00000616577	hsa-miR-143-5p	45333991	45333997	7mer-m8	45333990	45334012	155	-17.74
CAediting_961580	chr13_45334029_-	ENSG00000133112.15	ENST00000616577	hsa-miR-216b-5p	45334025	45334031	7mer-m8	45334024	45334046	147	-12.78
CAediting_961602	chr13_45334203_-	ENSG00000133112.15	ENST00000616577	hsa-miR-218-1-3p	45334200	45334206	7mer-m8	45334199	45334221	141	-13.45
CAediting_961603	chr13_45334204_-	ENSG00000133112.15	ENST00000616577	hsa-miR-218-1-3p	45334200	45334206	7mer-m8	45334199	45334221	141	-13.45
CAediting_961602	chr13_45334203_-	ENSG00000133112.15	ENST00000616577	hsa-miR-218-2-3p	45334199	45334205	7mer-m8	45334198	45334220	146	-14.49
CAediting_961603	chr13_45334204_-	ENSG00000133112.15	ENST00000616577	hsa-miR-218-2-3p	45334199	45334205	7mer-m8	45334198	45334220	146	-14.49
CAediting_961576	chr13_45333992_-	ENSG00000133112.15	ENST00000616577	hsa-miR-301a-3p	45333990	45333995	6mer	45333989	45334011	145	-16.62
CAediting_961576	chr13_45333992_-	ENSG00000133112.15	ENST00000616577	hsa-miR-301b-3p	45333990	45333995	6mer	45333989	45334011	145	-16.35
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3187-5p	45336153	45336159	7mer-m8	45336152	45336179	151	-22.57
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3663-5p	45334124	45334130	7mer-m8	45334123	45334142	144	-20.26
CAediting_961596	chr13_45334130_-	ENSG00000133112.15	ENST00000616577	hsa-miR-371a-5p	45334128	45334135	8mer-1a	45334128	45334147	146	-15.86
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000616577	hsa-miR-371b-5p	45336287	45336293	7mer-m8	45336286	45336307	143	-12.06
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000616577	hsa-miR-373-5p	45336287	45336293	7mer-m8	45336286	45336309	147	-13.53
CAediting_961581	chr13_45334031_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3917	45334029	45334036	8mer-1a	45334029	45334049	152	-21.01
CAediting_961610	chr13_45336072_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4478	45336068	45336074	7mer-m8	45336067	45336083	154	-23.4
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4489	45334179	45334186	8mer-1a	45334179	45334197	148	-20.38
CAediting_961594	chr13_45334111_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4685-3p	45334105	45334111	7mer-1a	45334105	45334127	140	-30.54
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4701-3p	45336271	45336277	7mer-m8	45336270	45336289	152	-20.01
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4701-3p	45336271	45336277	7mer-m8	45336270	45336289	152	-20.01
CAediting_961588	chr13_45334092_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4775	45334091	45334098	8mer-1a	45334091	45334109	155	-11.92
CAediting_961589	chr13_45334095_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4775	45334091	45334098	8mer-1a	45334091	45334109	155	-11.92
CAediting_961590	chr13_45334096_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4775	45334091	45334098	8mer-1a	45334091	45334109	155	-11.92
CAediting_961591	chr13_45334097_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4775	45334091	45334098	8mer-1a	45334091	45334109	155	-11.92
CAediting_961604	chr13_45334207_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4794	45334206	45334212	7mer-m8	45334205	45334227	147	-17.18
CAediting_961610	chr13_45336072_-	ENSG00000133112.15	ENST00000616577	hsa-miR-485-5p	45336067	45336073	7mer-m8	45336066	45336086	144	-16.49
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000616577	hsa-miR-512-5p	45334160	45334166	7mer-m8	45334159	45334181	153	-23.99
CAediting_961599	chr13_45334162_-	ENSG00000133112.15	ENST00000616577	hsa-miR-512-5p	45334160	45334166	7mer-m8	45334159	45334181	153	-23.99
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000616577	hsa-miR-5196-3p	45334043	45334049	7mer-m8	45334042	45334066	144	-21.73
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000616577	hsa-miR-548v	45334183	45334189	7mer-m8	45334182	45334203	143	-12.52
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000616577	hsa-miR-612	45336153	45336159	7mer-m8	45336152	45336177	148	-24.29
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6131	45334123	45334129	7mer-m8	45334122	45334140	140	-16.72
CAediting_961621	chr13_45336288_-	ENSG00000133112.15	ENST00000616577	hsa-miR-616-5p	45336287	45336293	7mer-m8	45336286	45336308	153	-14.85
CAediting_961586	chr13_45334072_-	ENSG00000133112.15	ENST00000616577	hsa-miR-619-5p	45334071	45334076	6mer	45334070	45334089	151	-29.49
CAediting_961604	chr13_45334207_-	ENSG00000133112.15	ENST00000616577	hsa-miR-664a-5p	45334206	45334212	7mer-m8	45334205	45334229	145	-18.2
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6736-5p	45336271	45336277	7mer-m8	45336270	45336289	152	-23.42
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6736-5p	45336271	45336277	7mer-m8	45336270	45336289	152	-23.42
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6742-3p	45336269	45336275	7mer-m8	45336268	45336286	148	-19.21
CAediting_961619	chr13_45336271_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6776-5p	45336270	45336276	7mer-m8	45336269	45336287	140	-18.51
CAediting_961620	chr13_45336275_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6776-5p	45336270	45336276	7mer-m8	45336269	45336287	140	-18.51
CAediting_961597	chr13_45334144_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6790-3p	45334139	45334145	7mer-1a	45334139	45334162	148	-33.32
CAediting_961601	chr13_45334193_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6807-5p	45334193	45334199	7mer-m8	45334192	45334212	146	-21.18
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6843-3p	45334125	45334131	7mer-m8	45334124	45334143	152	-20.48
CAediting_961596	chr13_45334130_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6843-3p	45334125	45334131	7mer-m8	45334124	45334143	152	-20.48
CAediting_961595	chr13_45334128_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6848-3p	45334125	45334131	7mer-m8	45334124	45334141	142	-15.32
CAediting_961596	chr13_45334130_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6848-3p	45334125	45334131	7mer-m8	45334124	45334141	142	-15.32
CAediting_961614	chr13_45336154_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6860	45336153	45336159	7mer-m8	45336152	45336174	154	-22.74
CAediting_961594	chr13_45334111_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6883-3p	45334107	45334113	7mer-m8	45334106	45334127	147	-15.17
CAediting_961583	chr13_45334048_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7111-3p	45334045	45334051	7mer-m8	45334044	45334065	148	-19.92
CAediting_961584	chr13_45334050_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7111-3p	45334045	45334051	7mer-m8	45334044	45334065	148	-19.92
CAediting_961600	chr13_45334185_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7151-3p	45334185	45334191	7mer-m8	45334184	45334207	147	-25.49
CAediting_961610	chr13_45336072_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7160-5p	45336070	45336076	7mer-m8	45336069	45336087	154	-21.55
CAediting_961611	chr13_45336085_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7161-3p	45336082	45336087	6mer	45336081	45336110	148	-22.29
CAediting_961612	chr13_45336087_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7161-3p	45336082	45336087	6mer	45336081	45336110	148	-22.29
CAediting_961610	chr13_45336072_-	ENSG00000133112.15	ENST00000616577	hsa-miR-7162-3p	45336071	45336077	7mer-m8	45336070	45336087	153	-22.62
CAediting_961615	chr13_45336189_-	ENSG00000133112.15	ENST00000616577	hsa-miR-921	45336189	45336195	7mer-m8	45336188	45336210	147	-16.66
CAediting_961608	chr13_45335723_-	ENSG00000133112.15	ENST00000616577	hsa-miR-939-3p	45335721	45335727	7mer-m8	45335720	45335741	148	-19.97
CAediting_961628	chr13_45338257_-	ENSG00000133112.15	ENST00000309246	hsa-miR-10399-5p	45338256	45338262	7mer-m8	45338255	45338275	146	-10.6
CAediting_961628	chr13_45338257_-	ENSG00000133112.15	ENST00000309246	hsa-miR-5089-5p	45338252	45338258	7mer-m8	45338251	45338269	146	-13.74
CAediting_961630	chr13_45338386_-	ENSG00000133112.15	ENST00000309246	hsa-miR-512-3p	45338381	45338387	7mer-m8	45338380	45338404	151	-18.66
CAediting_961630	chr13_45338386_-	ENSG00000133112.15	ENST00000309246	hsa-miR-512-3p	45338381	45338387	7mer-m8	45338380	45338404	151	-18.66
CAediting_961629	chr13_45338264_-	ENSG00000133112.15	ENST00000309246	hsa-miR-552-3p	45338258	45338265	8mer-1a	45338258	45338278	150	-15.72
CAediting_961628	chr13_45338257_-	ENSG00000133112.15	ENST00000309246	hsa-miR-6504-3p	45338256	45338262	7mer-m8	45338255	45338279	144	-12.22
CAediting_961623	chr13_45338191_-	ENSG00000133112.15	ENST00000309246	hsa-miR-6828-3p	45338189	45338195	7mer-m8	45338188	45338208	153	-21.06
CAediting_961623	chr13_45338191_-	ENSG00000133112.15	ENST00000309246	hsa-miR-767-3p	45338189	45338196	8mer-1a	45338189	45338215	145	-25.63

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000133112.15	ENST00000530705	hsa-miR-548aa	45336397	45336403	7mer-m8	45336396	45336420	142	-9.28
CAediting_228905	chr2_188297554_+	ENSG00000133112.15	ENST00000530705	hsa-miR-561-3p	45335705	45335711	7mer-m8	45335704	45335728	152	-19.8
CAediting_396018	chr5_1062918_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4635	45335696	45335702	7mer-m8	45335695	45335715	161	-21.99
CAediting_396018	chr5_1062918_-	ENSG00000133112.15	ENST00000530705	hsa-miR-4635	45334785	45334791	7mer-m8	45334784	45334804	152	-18.85
CAediting_1229413	chr17_67471544_+	ENSG00000133112.15	ENST00000616577	hsa-miR-548aa	45336397	45336403	7mer-m8	45336396	45336420	142	-9.28
CAediting_228905	chr2_188297554_+	ENSG00000133112.15	ENST00000616577	hsa-miR-561-3p	45335705	45335711	7mer-m8	45335704	45335728	152	-19.8
CAediting_396018	chr5_1062918_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4635	45335696	45335702	7mer-m8	45335695	45335715	161	-21.99
CAediting_396018	chr5_1062918_-	ENSG00000133112.15	ENST00000616577	hsa-miR-4635	45334785	45334791	7mer-m8	45334784	45334804	152	-18.85

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1306323	chr19_13836462_-	ENSG00000133112.15	ENST00000530705	hsa-miR-27a-3p	45337255	45337261	7mer-m8	45337254	45337276	147	-10.56
CAediting_604450	chr7_133034877_-	ENSG00000133112.15	ENST00000530705	hsa-miR-3654	45336662	45336668	7mer-m8	45336661	45336681	144	-14.6
CAediting_1524209	chrX_134546392_-	ENSG00000133112.15	ENST00000530705	hsa-miR-503-5p	45336404	45336410	7mer-1a	45336404	45336428	143	-25.95
CAediting_1229413	chr17_67471544_+	ENSG00000133112.15	ENST00000530705	hsa-miR-548aa	45333693	45333699	7mer-m8	45333692	45333717	145	-11.01
CAediting_1229414	chr17_67471546_+	ENSG00000133112.15	ENST00000530705	hsa-miR-548aa	45333693	45333699	7mer-m8	45333692	45333717	145	-11.01
CAediting_1229415	chr17_67471547_+	ENSG00000133112.15	ENST00000530705	hsa-miR-548aa	45333693	45333699	7mer-m8	45333692	45333717	145	-11.01
CAediting_524911	chr7_5495852_-	ENSG00000133112.15	ENST00000530705	hsa-miR-589-3p	45334874	45334880	7mer-m8	45334873	45334896	155	-20.01
CAediting_1399425	chr20_1392958_-	ENSG00000133112.15	ENST00000530705	hsa-miR-6869-5p	45334064	45334070	7mer-m8	45334063	45334086	152	-20.41
CAediting_1306323	chr19_13836462_-	ENSG00000133112.15	ENST00000616577	hsa-miR-27a-3p	45337255	45337261	7mer-m8	45337254	45337276	147	-10.56
CAediting_604450	chr7_133034877_-	ENSG00000133112.15	ENST00000616577	hsa-miR-3654	45336662	45336668	7mer-m8	45336661	45336681	144	-14.6
CAediting_1524209	chrX_134546392_-	ENSG00000133112.15	ENST00000616577	hsa-miR-503-5p	45336404	45336410	7mer-1a	45336404	45336428	143	-25.95
CAediting_1229413	chr17_67471544_+	ENSG00000133112.15	ENST00000616577	hsa-miR-548aa	45333693	45333699	7mer-m8	45333692	45333717	145	-11.01
CAediting_1229414	chr17_67471546_+	ENSG00000133112.15	ENST00000616577	hsa-miR-548aa	45333693	45333699	7mer-m8	45333692	45333717	145	-11.01
CAediting_1229415	chr17_67471547_+	ENSG00000133112.15	ENST00000616577	hsa-miR-548aa	45333693	45333699	7mer-m8	45333692	45333717	145	-11.01
CAediting_524911	chr7_5495852_-	ENSG00000133112.15	ENST00000616577	hsa-miR-589-3p	45334874	45334880	7mer-m8	45334873	45334896	155	-20.01
CAediting_1399425	chr20_1392958_-	ENSG00000133112.15	ENST00000616577	hsa-miR-6869-5p	45334064	45334070	7mer-m8	45334063	45334086	152	-20.41

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TPT1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for TPT1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_961581	chr13_45334031_-	.	.	.	.	0.0186615782939982	0.295615286713445
KIRC	CAediting_961581	chr13_45334031_-	0.0112680426668324	0.230632821613273	.	.	.	.
LGG	CAediting_961582	chr13_45334037_-	0.0136305442540101	0.302284288091461	.	.	.	.
KIRC	CAediting_961582	chr13_45334037_-	0.00834681206814324	0.28113060408729	.	.	.	.
LGG	CAediting_961597	chr13_45334144_-	0.00829192107805807	0.168315769137472	.	.	.	.
THCA	CAediting_961597	chr13_45334144_-	0.0148406776092662	0.132031202046876	.	.	.	.

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Relation with cancer stages for TPT1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_961597	chr13_45334144_-	6.04852891966691e-05	0.224351490955472

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Relation with survival for TPT1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TPT1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene	UniProtAcc	DrugBank ID	Drug name	Drug activity	Drug type	Drug status
TPT1	P13693	DB11348	Calcium Phosphate	Translationally-controlled tumor protein	SmallMoleculeDrug	approved
TPT1	P13693	DB14481	Calcium phosphate dihydrate	Translationally-controlled tumor protein	SmallMoleculeDrug	approved
TPT1	P13693	DB11093	Calcium citrate	Translationally-controlled tumor protein	SmallMoleculeDrug	approved\|investigational

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RelatedDiseases for TPT1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
TPT1	C0022665	Kidney Neoplasm	1	CTD_human
TPT1	C0033578	Prostatic Neoplasms	1	CTD_human
TPT1	C0036341	Schizophrenia	1	PSYGENET
TPT1	C0376358	Malignant neoplasm of prostate	1	CTD_human
TPT1	C0740457	Malignant neoplasm of kidney	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene