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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TOP2B (CAeditome ID:7155)

Gene summary for TOP2B

check button Gene summary
Gene informationGene symbol

TOP2B

Gene ID

7155

Gene nameDNA topoisomerase II beta
SynonymsTOPIIB|top2beta
Cytomap

3p24.2

Type of geneprotein-coding
DescriptionDNA topoisomerase 2-betaDNA topoisomerase II, 180 kDDNA topoisomerase II, beta isozymeU937 associated antigenantigen MLAA-44topo II betatopoisomerase (DNA) II beta 180kDatopoisomerase II betatopoisomerase IIb
Modification date20210518
UniProtAcc

Q02880

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TOP2B

GO:0005730

DNA topoisomerase 2-beta

9049244

TOP2B

GO:0000792

DNA topoisomerase 2-beta

9049244

TOP2B

GO:0003682

DNA topoisomerase 2-beta

9049244

TOP2B

GO:0003918

DNA topoisomerase 2-beta

10684600

TOP2B

GO:0006265

DNA topoisomerase 2-beta

10684600

TOP2B

GO:0005634

DNA topoisomerase 2-beta

17567603

TOP2B

GO:0005634

DNA topoisomerase 2-beta

9049244

TOP2B

GO:0005634

DNA topoisomerase 2-beta

9155056

TOP2B

GO:0005654

DNA topoisomerase 2-beta

0000052

TOP2B

GO:0005654

DNA topoisomerase 2-beta

9049244

TOP2B

GO:0005730

DNA topoisomerase 2-beta

8299728

TOP2B

GO:0005730

DNA topoisomerase 2-beta

9155056

TOP2B

GO:0005829

DNA topoisomerase 2-beta

9049244


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RNA A-to-I events for TOP2B

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000077097.12

check button RNA A-to-I editing events in Cancer.
CAediting_263443(25598307, -), CAediting_263444(25598312, -), CAediting_263445(25598340, -), CAediting_263446(25598344, -), CAediting_263447(25601393, -), CAediting_263448(25601402, -), CAediting_263449(25601427, -), CAediting_263450(25601439, -), CAediting_263451(25601507, -), CAediting_263452(25601511, -), CAediting_263453(25601519, -), CAediting_263454(25601561, -), CAediting_263455(25601607, -), CAediting_263456(25602131, -), CAediting_263457(25602152, -), CAediting_263458(25602239, -), CAediting_263459(25602249, -), CAediting_263460(25602288, -), CAediting_263461(25602289, -), CAediting_263462(25602314, -), CAediting_263463(25602356, -), CAediting_263464(25602359, -), CAediting_263465(25602366, -), CAediting_263466(25603311, -), CAediting_263467(25603324, -), CAediting_263468(25603345, -), CAediting_263469(25603347, -), CAediting_263470(25603359, -), CAediting_263471(25603363, -), CAediting_263472(25603367, -), CAediting_263473(25603407, -), CAediting_263474(25603411, -), CAediting_263475(25603422, -), CAediting_263476(25603485, -), CAediting_263477(25603489, -), CAediting_263478(25603510, -), CAediting_263479(25603532, -), CAediting_263480(25621396, -), CAediting_263481(25621454, -), CAediting_263482(25621459, -), CAediting_263483(25621499, -), CAediting_263484(25621500, -), CAediting_263485(25621510, -), CAediting_263486(25621556, -), CAediting_263487(25621634, -), CAediting_263488(25644450, -), CAediting_263489(25644660, -), CAediting_263490(25644934, -), CAediting_263491(25645077, -), CAediting_263492(25646050, -), CAediting_263493(25648737, -), CAediting_263494(25648856, -), CAediting_263495(25651636, -), CAediting_263496(25651687, -), CAediting_263497(25651829, -), CAediting_263498(25653429, -), CAediting_263499(25653594, -), CAediting_263500(25653636, -), CAediting_263501(25653676, -), CAediting_263502(25661063, -), CAediting_263503(25661097, -), CAediting_263504(25661098, -), CAediting_263505(25661129, -), CAediting_263506(25661138, -), CAediting_263507(25661263, -),

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RNA editing positional annotations for TOP2B using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_263444chr3_25598312_-nonsynonymous SNVENST00000264331.7c.A4876Gp.N1626DDBN
CAediting_263444chr3_25598312_-nonsynonymous SNVENST00000435706.5c.A4861Gp.N1621DDBN
CAediting_263446chr3_25598344_-nonsynonymous SNVENST00000264331.7c.A4844Gp.E1615GDDN
CAediting_263446chr3_25598344_-nonsynonymous SNVENST00000435706.5c.A4829Gp.E1610GDDN

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_263443chr3_25598307_-exonic
CAediting_263444chr3_25598312_-exonic
CAediting_263445chr3_25598340_-exonic
CAediting_263446chr3_25598344_-exonic
CAediting_263447chr3_25601393_-intronic
CAediting_263448chr3_25601402_-intronic
CAediting_263449chr3_25601427_-intronic
CAediting_263450chr3_25601439_-intronic
CAediting_263451chr3_25601507_-intronic
CAediting_263452chr3_25601511_-intronic
CAediting_263453chr3_25601519_-intronic
CAediting_263454chr3_25601561_-intronic
CAediting_263455chr3_25601607_-intronic
CAediting_263456chr3_25602131_-intronic
CAediting_263457chr3_25602152_-intronic
CAediting_263458chr3_25602239_-intronic
CAediting_263459chr3_25602249_-intronic
CAediting_263460chr3_25602288_-intronic
CAediting_263461chr3_25602289_-intronic
CAediting_263462chr3_25602314_-intronic
CAediting_263463chr3_25602356_-intronic
CAediting_263464chr3_25602359_-intronic
CAediting_263465chr3_25602366_-intronic
CAediting_263466chr3_25603311_-intronic
CAediting_263467chr3_25603324_-intronic
CAediting_263468chr3_25603345_-intronic
CAediting_263469chr3_25603347_-intronic
CAediting_263470chr3_25603359_-intronic
CAediting_263471chr3_25603363_-intronic
CAediting_263472chr3_25603367_-intronic
CAediting_263473chr3_25603407_-intronic
CAediting_263474chr3_25603411_-intronic
CAediting_263475chr3_25603422_-intronic
CAediting_263476chr3_25603485_-intronic
CAediting_263477chr3_25603489_-intronic
CAediting_263478chr3_25603510_-intronic
CAediting_263479chr3_25603532_-intronic
CAediting_263480chr3_25621396_-intronic
CAediting_263481chr3_25621454_-intronic
CAediting_263482chr3_25621459_-intronic
CAediting_263483chr3_25621499_-intronic
CAediting_263484chr3_25621500_-intronic
CAediting_263485chr3_25621510_-intronic
CAediting_263486chr3_25621556_-intronic
CAediting_263487chr3_25621634_-intronic
CAediting_263488chr3_25644450_-intronic
CAediting_263489chr3_25644660_-intronic
CAediting_263490chr3_25644934_-intronic
CAediting_263491chr3_25645077_-intronic
CAediting_263492chr3_25646050_-intronic
CAediting_263493chr3_25648737_-intronic
CAediting_263494chr3_25648856_-intronic
CAediting_263495chr3_25651636_-intronic
CAediting_263496chr3_25651687_-intronic
CAediting_263497chr3_25651829_-intronic
CAediting_263498chr3_25653429_-intronic
CAediting_263499chr3_25653594_-intronic
CAediting_263500chr3_25653636_-intronic
CAediting_263501chr3_25653676_-intronic
CAediting_263502chr3_25661063_-intronic
CAediting_263503chr3_25661097_-intronic
CAediting_263504chr3_25661098_-intronic
CAediting_263505chr3_25661129_-intronic
CAediting_263506chr3_25661138_-intronic
CAediting_263507chr3_25661263_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_263447chr3_25601393_-SINEAluAluSq
CAediting_263448chr3_25601402_-SINEAluAluSq
CAediting_263449chr3_25601427_-SINEAluAluSq
CAediting_263450chr3_25601439_-SINEAluAluSq
CAediting_263451chr3_25601507_-SINEAluAluSq
CAediting_263452chr3_25601511_-SINEAluAluSq
CAediting_263453chr3_25601519_-SINEAluAluSq
CAediting_263454chr3_25601561_-SINEAluAluSq
CAediting_263455chr3_25601607_-SINEAluAluSq
CAediting_263456chr3_25602131_-SINEAluAluSx3
CAediting_263457chr3_25602152_-SINEAluAluSx3
CAediting_263458chr3_25602239_-SINEAluAluSx3
CAediting_263459chr3_25602249_-SINEAluAluSx3
CAediting_263460chr3_25602288_-SINEAluAluSx3
CAediting_263461chr3_25602289_-SINEAluAluSx3
CAediting_263462chr3_25602314_-SINEAluAluSx3
CAediting_263463chr3_25602356_-SINEAluAluSx3
CAediting_263464chr3_25602359_-SINEAluAluSx3
CAediting_263465chr3_25602366_-SINEAluAluSx3
CAediting_263466chr3_25603311_-SINEAluAluSz6
CAediting_263467chr3_25603324_-SINEAluAluSz6
CAediting_263468chr3_25603345_-SINEAluAluSz6
CAediting_263469chr3_25603347_-SINEAluAluSz6
CAediting_263470chr3_25603359_-SINEAluAluSz6
CAediting_263471chr3_25603363_-SINEAluAluSz6
CAediting_263472chr3_25603367_-SINEAluAluSz6
CAediting_263473chr3_25603407_-SINEAluAluSz6
CAediting_263474chr3_25603411_-SINEAluAluSz6
CAediting_263475chr3_25603422_-SINEAluAluSz6
CAediting_263476chr3_25603485_-SINEAluAluSz6
CAediting_263477chr3_25603489_-SINEAluAluSz6
CAediting_263478chr3_25603510_-SINEAluAluSz6
CAediting_263479chr3_25603532_-SINEAluAluSz6
CAediting_263480chr3_25621396_-SINEAluAluJb
CAediting_263481chr3_25621454_-SINEAluAluJb
CAediting_263482chr3_25621459_-SINEAluAluJb
CAediting_263483chr3_25621499_-SINEAluAluJb
CAediting_263484chr3_25621500_-SINEAluAluJb
CAediting_263485chr3_25621510_-SINEAluAluJb
CAediting_263486chr3_25621556_-SINEAluAluJb
CAediting_263487chr3_25621634_-SINEAluAluJb
CAediting_263488chr3_25644450_-SINEAluAluSx
CAediting_263489chr3_25644660_-SINEAluAluSx
CAediting_263490chr3_25644934_-SINEAluAluY
CAediting_263491chr3_25645077_-SINEAluAluY
CAediting_263492chr3_25646050_-SINEAluAluSx
CAediting_263493chr3_25648737_-SINEAluAluJb
CAediting_263494chr3_25648856_-SINEAluAluJb
CAediting_263495chr3_25651636_-SINEAluAluSx1
CAediting_263496chr3_25651687_-SINEAluAluSx1
CAediting_263497chr3_25651829_-SINEAluAluSx1
CAediting_263498chr3_25653429_-SINEAluAluJb
CAediting_263499chr3_25653594_-SINEAluAluJb
CAediting_263500chr3_25653636_-SINEAluAluJb
CAediting_263501chr3_25653676_-SINEAluAluJb
CAediting_263502chr3_25661063_-SINEAluAluSp
CAediting_263503chr3_25661097_-SINEAluAluSp
CAediting_263504chr3_25661098_-SINEAluAluSp
CAediting_263505chr3_25661129_-SINEAluAluSp
CAediting_263506chr3_25661138_-SINEAluAluSp
CAediting_263507chr3_25661263_-SINEAluAluSp

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RNA A-to-I editing events in the alternative splicing sites for TOP2B

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000077097.12.TOP2B.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000077097.12.TOP2B.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TOP2B

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TOP2B

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for TOP2B

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_263445chr3_25598340_-ENSG00000077097.12ENST00000413971hsa-miR-3059-5p25598337255983437mer-m82559833625598359141.00-17.64
CAediting_263445chr3_25598340_-ENSG00000077097.12ENST00000413971hsa-miR-6515-3p25598340255983467mer-m82559833925598358150.00-15.50
CAediting_263445chr3_25598340_-ENSG00000077097.12ENST00000413971hsa-miR-6881-3p25598337255983448mer-1a2559833725598360147.00-15.57
CAediting_263445chr3_25598340_-ENSG00000077097.12ENST00000413971hsa-miR-877-3p25598338255983458mer-1a2559833825598358145.00-16.93

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_263445chr3_25598340_-ENSG00000077097.12ENST00000413971hsa-miR-4659b-3p25598340255983456mer2559833625598361155-19.53
CAediting_263445chr3_25598340_-ENSG00000077097.12ENST00000413971hsa-miR-4659b-3p25598337255983437mer-m82559833625598361155-19.53

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000077097.12ENST00000413971hsa-miR-605-3p25612593256126008mer-1a2561259325612614144-12.93
CAediting_688081chr9_63819627_+ENSG00000077097.12ENST00000413971hsa-miR-4477b25601198256012047mer-m82560119725601219152-18.01
CAediting_1351755chr19_40282625_-ENSG00000077097.12ENST00000264331hsa-miR-64125597973255979786mer2559797225597995142-22.72
CAediting_1351755chr19_40282625_-ENSG00000077097.12ENST00000413971hsa-miR-64125615487256154937mer-m82561548625615508152-15.85
CAediting_228905chr2_188297554_+ENSG00000077097.12ENST00000413971hsa-miR-561-3p25601149256011557mer-m82560114825601168153-16.92
CAediting_77128chr1_85133844_+ENSG00000077097.12ENST00000413971hsa-miR-4423-3p25598299255983068mer-1a2559829925598321152-14.26

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TOP2B

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000264331.7protein_codingSoverviewSoverview
ENST00000413971.4nonsense_mediated_decaySoverviewSoverview
ENST00000435706.5protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_263443ENST00000264331.7chr3_25598307_--1349.20-1349.20-1351.30
CAediting_263444ENST00000264331.7chr3_25598312_--1349.20-1349.20-1351.30
CAediting_263445ENST00000264331.7chr3_25598340_--1349.60-1349.20-1351.30
CAediting_263446ENST00000264331.7chr3_25598344_--1351.60-1349.20-1351.30
CAediting_263443ENST00000413971.4chr3_25598307_--485.80-485.70-490.60
CAediting_263444ENST00000413971.4chr3_25598312_--485.70-485.70-490.60
CAediting_263445ENST00000413971.4chr3_25598340_--486.30-485.70-490.60
CAediting_263446ENST00000413971.4chr3_25598344_--490.00-485.70-490.60
CAediting_263443ENST00000435706.5chr3_25598307_--1397.40-1397.40-1399.50
CAediting_263444ENST00000435706.5chr3_25598312_--1397.40-1397.40-1399.50
CAediting_263445ENST00000435706.5chr3_25598340_--1397.80-1397.40-1399.50
CAediting_263446ENST00000435706.5chr3_25598344_--1399.80-1397.40-1399.50

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Relation with ADAR for TOP2B

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for TOP2B

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for TOP2B

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for TOP2B

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TOP2BQ02880DB00694DaunorubicinDNA topoisomerase 2-beta SmallMoleculeDrugapproved
TOP2BQ02880DB00773EtoposideDNA topoisomerase 2-beta SmallMoleculeDrugapproved
TOP2BQ02880DB00970DactinomycinDNA topoisomerase 2-beta SmallMoleculeDrugapproved|investigational
TOP2BQ02880DB00380DexrazoxaneDNA topoisomerase 2-beta SmallMoleculeDrugapproved|withdrawn

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RelatedDiseases for TOP2B

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
TOP2BC0023466Leukemia, Monocytic, Chronic1CTD_human
TOP2BC0023470Myeloid Leukemia1CTD_human
TOP2BC0282612Prostatic Intraepithelial Neoplasias1CTD_human