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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TNFRSF1A (CAeditome ID:7132) |
Gene summary for TNFRSF1A |
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Gene information | Gene symbol | TNFRSF1A | Gene ID | 7132 |
Gene name | TNF receptor superfamily member 1A | |
Synonyms | CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 | |
Cytomap | 12p13.31 | |
Type of gene | protein-coding | |
Description | tumor necrosis factor receptor superfamily member 1ATNF-R1TNF-RITNFR-Itumor necrosis factor binding protein 1tumor necrosis factor receptor type 1tumor necrosis factor-alpha receptor | |
Modification date | 20210524 | |
UniProtAcc | P19438 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TNFRSF1A | GO:0000139 | Tumor necrosis factor receptor superfamily member 1A | 22801493 |
TNFRSF1A | GO:0005615 | Tumor necrosis factor receptor superfamily member 1A | 13130484 |
TNFRSF1A | GO:0045121 | Tumor necrosis factor receptor superfamily member 1A | 17010968 |
TNFRSF1A | GO:0043235 | Tumor necrosis factor receptor superfamily member 1A | 23382219 |
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RNA A-to-I events for TNFRSF1A |
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CAediting_864510(6331220, -), CAediting_864511(6331751, -), CAediting_864512(6331763, -), CAediting_864513(6331764, -), CAediting_864514(6331797, -), CAediting_864515(6331818, -), CAediting_864516(6331879, -), CAediting_864517(6331889, -), CAediting_864518(6331892, -), CAediting_864519(6331993, -), CAediting_864520(6332222, -), CAediting_864521(6332420, -), CAediting_864522(6334613, -), CAediting_864523(6334614, -), CAediting_864524(6334727, -), CAediting_864525(6334737, -), CAediting_864526(6337955, -), CAediting_864527(6338613, -), |
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RNA editing positional annotations for TNFRSF1A using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_864518 | chr12_6331892_- | nonsynonymous SNV | ENST00000366159.7 | c.A653G | p.K218R | D | . | N |
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CAeditome ID | Position | Variant type |
CAediting_864510 | chr12_6331220_- | ncRNA_exonic |
CAediting_864511 | chr12_6331751_- | ncRNA_intronic |
CAediting_864512 | chr12_6331763_- | ncRNA_intronic |
CAediting_864513 | chr12_6331764_- | ncRNA_intronic |
CAediting_864514 | chr12_6331797_- | ncRNA_intronic |
CAediting_864515 | chr12_6331818_- | ncRNA_intronic |
CAediting_864516 | chr12_6331879_- | ncRNA_exonic |
CAediting_864517 | chr12_6331889_- | exonic |
CAediting_864518 | chr12_6331892_- | exonic |
CAediting_864519 | chr12_6331993_- | exonic |
CAediting_864520 | chr12_6332222_- | ncRNA_intronic |
CAediting_864521 | chr12_6332420_- | ncRNA_intronic |
CAediting_864522 | chr12_6334613_- | ncRNA_intronic |
CAediting_864523 | chr12_6334614_- | ncRNA_intronic |
CAediting_864524 | chr12_6334727_- | ncRNA_intronic |
CAediting_864525 | chr12_6334737_- | ncRNA_intronic |
CAediting_864526 | chr12_6337955_- | ncRNA_intronic |
CAediting_864527 | chr12_6338613_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_864510 | chr12_6331220_- | SINE | MIR | MIRb |
CAediting_864511 | chr12_6331751_- | SINE | Alu | AluSg |
CAediting_864512 | chr12_6331763_- | SINE | Alu | AluSg |
CAediting_864513 | chr12_6331764_- | SINE | Alu | AluSg |
CAediting_864514 | chr12_6331797_- | SINE | Alu | AluSg |
CAediting_864515 | chr12_6331818_- | SINE | Alu | AluSg |
CAediting_864516 | chr12_6331879_- | SINE | Alu | AluSg |
CAediting_864517 | chr12_6331889_- | SINE | Alu | AluSg |
CAediting_864518 | chr12_6331892_- | SINE | Alu | AluSg |
CAediting_864519 | chr12_6331993_- | SINE | Alu | AluSg |
CAediting_864520 | chr12_6332222_- | SINE | Alu | AluJo |
CAediting_864521 | chr12_6332420_- | SINE | Alu | AluJo |
CAediting_864522 | chr12_6334613_- | SINE | Alu | AluJb |
CAediting_864523 | chr12_6334614_- | SINE | Alu | AluJb |
CAediting_864524 | chr12_6334727_- | SINE | Alu | AluJb |
CAediting_864525 | chr12_6334737_- | SINE | Alu | AluJb |
CAediting_864527 | chr12_6338613_- | SINE | Alu | AluJo |
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RNA A-to-I editing events in the alternative splicing sites for TNFRSF1A |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_864519 | chr12_6331993_- | 6331991:6332013 | 3SS | 1+0i | TTTTTTTTTTTTTGACACAGAGT | 8.24 | TTTTTTTTTTTTTGACACAGGGT | 9.15 |
IR | CAediting_864519 | chr12_6331993_- | 6331991:6332013 | 3SS | 1+0i | TTTTTTTTTTTTTGACACAGAGT | 8.24 | TTTTTTTTTTTTTGACACAGGGT | 9.15 |
MEX_2 | CAediting_864519 | chr12_6331993_- | 6331991:6332013 | 3SS | 1+0i | TTTTTTTTTTTTTGACACAGAGT | 8.24 | TTTTTTTTTTTTTGACACAGGGT | 9.15 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TNFRSF1A |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TNFRSF1A |
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The effects of the RNA editing to the miRNA binding sites for TNFRSF1A |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_864512 | chr12_6331763_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-3189-3p | 6331762 | 6331768 | 7mer-m8 | 6331761 | 6331784 | 145.00 | -23.98 |
CAediting_864512 | chr12_6331763_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-6813-3p | 6331761 | 6331767 | 7mer-m8 | 6331760 | 6331780 | 140.00 | -11.59 |
CAediting_864513 | chr12_6331764_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-326 | 6331762 | 6331768 | 7mer-m8 | 6331761 | 6331780 | 140.00 | -13.87 |
CAediting_864513 | chr12_6331764_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-330-5p | 6331762 | 6331768 | 7mer-m8 | 6331761 | 6331782 | 140.00 | -19.56 |
CAediting_864513 | chr12_6331764_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-4314 | 6331763 | 6331769 | 7mer-m8 | 6331762 | 6331779 | 142.00 | -19.99 |
CAediting_864513 | chr12_6331764_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-514a-5p | 6331761 | 6331767 | 7mer-m8 | 6331760 | 6331781 | 151.00 | -18.62 |
CAediting_864513 | chr12_6331764_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-514a-5p | 6331761 | 6331767 | 7mer-m8 | 6331760 | 6331781 | 151.00 | -18.62 |
CAediting_864513 | chr12_6331764_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-514a-5p | 6331761 | 6331767 | 7mer-m8 | 6331760 | 6331781 | 151.00 | -18.62 |
CAediting_864515 | chr12_6331818_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-433-5p | 6331817 | 6331823 | 7mer-m8 | 6331816 | 6331839 | 159.00 | -21.68 |
CAediting_864514 | chr12_6331797_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-4294 | 6331792 | 6331798 | 7mer-m8 | 6331791 | 6331808 | 150.00 | -18.29 |
CAediting_864514 | chr12_6331797_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-4329 | 6331796 | 6331803 | 8mer-1a | 6331796 | 6331814 | 145.00 | -16.55 |
CAediting_864511 | chr12_6331751_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-106a-3p | 6331749 | 6331754 | 6mer | 6331748 | 6331769 | 141.00 | -21.13 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_864515 | chr12_6331818_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-4426 | 6331814 | 6331820 | 7mer-m8 | 6331813 | 6331829 | 143 | -10.94 |
CAediting_864515 | chr12_6331818_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-4647 | 6331814 | 6331820 | 7mer-m8 | 6331813 | 6331835 | 150 | -14.2 |
CAediting_864515 | chr12_6331818_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-4662b | 6331814 | 6331820 | 7mer-m8 | 6331813 | 6331834 | 144 | -9.8 |
CAediting_864515 | chr12_6331818_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-7855-5p | 6331818 | 6331823 | 6mer | 6331817 | 6331836 | 148 | -26.03 |
CAediting_864513 | chr12_6331764_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-887-5p | 6331763 | 6331770 | 8mer-1a | 6331763 | 6331783 | 142 | -11.92 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000067182.6 | ENST00000534885 | hsa-miR-605-3p | 6328888 | 6328894 | 7mer-m8 | 6328887 | 6328907 | 154 | -22.09 |
CAediting_688080 | chr9_63819626_+ | ENSG00000067182.6 | ENST00000366159 | hsa-miR-4477b | 6331274 | 6331280 | 7mer-m8 | 6331273 | 6331294 | 140 | -10.71 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000067182.6 | ENST00000534885 | hsa-miR-548aa | 6330671 | 6330677 | 7mer-m8 | 6330670 | 6330694 | 142 | -13.47 |
CAediting_1368054 | chr19_46709310_- | ENSG00000067182.6 | ENST00000534885 | hsa-miR-320e | 6329945 | 6329951 | 7mer-m8 | 6329944 | 6329962 | 149 | -21.97 |
CAediting_77128 | chr1_85133844_+ | ENSG00000067182.6 | ENST00000534885 | hsa-miR-4423-3p | 6329967 | 6329973 | 7mer-m8 | 6329966 | 6329986 | 140 | -16 |
CAediting_573000 | chr7_92204081_- | ENSG00000067182.6 | ENST00000534885 | hsa-miR-1285-5p | 6329269 | 6329275 | 7mer-m8 | 6329268 | 6329288 | 142 | -17.74 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000067182.6 | ENST00000543995 | hsa-miR-548aa | 6330671 | 6330677 | 7mer-m8 | 6330670 | 6330694 | 142 | -13.47 |
CAediting_1368054 | chr19_46709310_- | ENSG00000067182.6 | ENST00000543995 | hsa-miR-320e | 6329945 | 6329951 | 7mer-m8 | 6329944 | 6329962 | 149 | -21.97 |
CAediting_77128 | chr1_85133844_+ | ENSG00000067182.6 | ENST00000543995 | hsa-miR-4423-3p | 6329967 | 6329973 | 7mer-m8 | 6329966 | 6329986 | 140 | -16 |
CAediting_573000 | chr7_92204081_- | ENSG00000067182.6 | ENST00000543995 | hsa-miR-1285-5p | 6329269 | 6329275 | 7mer-m8 | 6329268 | 6329288 | 142 | -17.74 |
CAediting_573000 | chr7_92204081_- | ENSG00000067182.6 | ENST00000540022 | hsa-miR-1285-5p | 6329269 | 6329275 | 7mer-m8 | 6329268 | 6329288 | 142 | -17.74 |
CAediting_1524209 | chrX_134546392_- | ENSG00000067182.6 | ENST00000534885 | hsa-miR-503-5p | 6329494 | 6329500 | 7mer-m8 | 6329493 | 6329512 | 157 | -29.44 |
CAediting_1524209 | chrX_134546392_- | ENSG00000067182.6 | ENST00000534885 | hsa-miR-503-5p | 6329155 | 6329160 | 6mer | 6329154 | 6329177 | 140 | -23.13 |
CAediting_1524209 | chrX_134546392_- | ENSG00000067182.6 | ENST00000543995 | hsa-miR-503-5p | 6329494 | 6329500 | 7mer-m8 | 6329493 | 6329512 | 157 | -29.44 |
CAediting_1524209 | chrX_134546392_- | ENSG00000067182.6 | ENST00000543995 | hsa-miR-503-5p | 6329155 | 6329160 | 6mer | 6329154 | 6329177 | 140 | -23.13 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_604450 | chr7_133034877_- | ENSG00000067182.6 | ENST00000366159 | hsa-miR-3654 | 6331553 | 6331559 | 7mer-m8 | 6331552 | 6331570 | 149 | -17.03 |
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The effects of the RNA editing to the stability of the RNA structures for TNFRSF1A |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TNFRSF1A |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TNFRSF1A |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TNFRSF1A |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TNFRSF1A |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
TNFRSF1A | P19438 | DB11626 | Tasonermin | Tumor necrosis factor receptor superfamily member 1A | BiotechDrug | approved |
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RelatedDiseases for TNFRSF1A |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
TNFRSF1A | C1275126 | TNF receptor-associated periodic fever syndrome (TRAPS) | 7 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
TNFRSF1A | C0011570 | Mental Depression | 5 | PSYGENET |
TNFRSF1A | C0011581 | Depressive disorder | 5 | PSYGENET |
TNFRSF1A | C0026769 | Multiple Sclerosis | 2 | CTD_human |
TNFRSF1A | C0751324 | Multiple Sclerosis, Acute Fulminating | 2 | CTD_human |
TNFRSF1A | C0002152 | Alloxan Diabetes | 1 | CTD_human |
TNFRSF1A | C0003123 | Anorexia | 1 | CTD_human |
TNFRSF1A | C0004364 | Autoimmune Diseases | 1 | CTD_human |
TNFRSF1A | C0006625 | Cachexia | 1 | CTD_human |
TNFRSF1A | C0007786 | Brain Ischemia | 1 | CTD_human |
TNFRSF1A | C0008312 | Primary biliary cirrhosis | 1 | CTD_human |
TNFRSF1A | C0010674 | Cystic Fibrosis | 1 | CTD_human |
TNFRSF1A | C0011853 | Diabetes Mellitus, Experimental | 1 | CTD_human |
TNFRSF1A | C0011860 | Diabetes Mellitus, Non-Insulin-Dependent | 1 | CTD_human |
TNFRSF1A | C0015967 | Fever | 1 | CTD_human |
TNFRSF1A | C0018801 | Heart failure | 1 | CTD_human |
TNFRSF1A | C0018802 | Congestive heart failure | 1 | CTD_human |
TNFRSF1A | C0020517 | Hypersensitivity | 1 | CTD_human |
TNFRSF1A | C0023212 | Left-Sided Heart Failure | 1 | CTD_human |
TNFRSF1A | C0023892 | Biliary cirrhosis | 1 | CTD_human |
TNFRSF1A | C0032285 | Pneumonia | 1 | CTD_human |
TNFRSF1A | C0032300 | Lobar Pneumonia | 1 | CTD_human |
TNFRSF1A | C0036341 | Schizophrenia | 1 | PSYGENET |
TNFRSF1A | C0038433 | Streptozotocin Diabetes | 1 | CTD_human |
TNFRSF1A | C0149910 | Intermittent joint effusion | 1 | ORPHANET |
TNFRSF1A | C0235527 | Heart Failure, Right-Sided | 1 | CTD_human |
TNFRSF1A | C0238065 | Secondary Biliary Cholangitis | 1 | CTD_human |
TNFRSF1A | C0242706 | Hyperoxia | 1 | CTD_human |
TNFRSF1A | C0273115 | Lung Injury | 1 | CTD_human |
TNFRSF1A | C0392164 | Pulmonary Cystic Fibrosis | 1 | CTD_human |
TNFRSF1A | C0751422 | Hereditary Autoinflammatory Diseases | 1 | GENOMICS_ENGLAND |
TNFRSF1A | C0887898 | Experimental Lung Inflammation | 1 | CTD_human |
TNFRSF1A | C0917798 | Cerebral Ischemia | 1 | CTD_human |
TNFRSF1A | C1527304 | Allergic Reaction | 1 | CTD_human |
TNFRSF1A | C1527396 | Fibrocystic Disease of Pancreas | 1 | CTD_human |
TNFRSF1A | C1959583 | Myocardial Failure | 1 | CTD_human |
TNFRSF1A | C1961112 | Heart Decompensation | 1 | CTD_human |
TNFRSF1A | C2350344 | Chronic Lung Injury | 1 | CTD_human |
TNFRSF1A | C3714636 | Pneumonitis | 1 | CTD_human |
TNFRSF1A | C3860213 | Autoinflammatory disorder | 1 | GENOMICS_ENGLAND |
TNFRSF1A | C4551595 | Biliary Cirrhosis, Primary, 1 | 1 | CTD_human |