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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TMSB4X (CAeditome ID:7114) |
Gene summary for TMSB4X |
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Gene information | Gene symbol | TMSB4X | Gene ID | 7114 |
Gene name | thymosin beta 4 X-linked | |
Synonyms | FX|PTMB4|TB4X|TMSB4 | |
Cytomap | Xp22.2 | |
Type of gene | protein-coding | |
Description | thymosin beta-4prothymosin beta-4t beta-4thymosin, beta 4, X chromosome | |
Modification date | 20210518 | |
UniProtAcc | P62328 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TMSB4X | GO:0003785 | Thymosin beta-4 | 1447300 |
TMSB4X | GO:0003785 | Thymosin beta-4 | 1999398 |
TMSB4X | GO:0032717 | Thymosin beta-4 | 21343177 |
TMSB4X | GO:0042989 | Thymosin beta-4 | 1447300 |
TMSB4X | GO:0042989 | Thymosin beta-4 | 1999398 |
TMSB4X | GO:0043536 | Thymosin beta-4 | 21106936 |
TMSB4X | GO:1903026 | Thymosin beta-4 | 21343177 |
TMSB4X | GO:1905273 | Thymosin beta-4 | 21106936 |
TMSB4X | GO:2001028 | Thymosin beta-4 | 21106936 |
TMSB4X | GO:2001171 | Thymosin beta-4 | 21106936 |
TMSB4X | GO:0005634 | Thymosin beta-4 | 21343177 |
TMSB4X | GO:0005737 | Thymosin beta-4 | 21343177 |
TMSB4X | GO:0005829 | Thymosin beta-4 | 1447300 |
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RNA A-to-I events for TMSB4X |
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CAediting_1499046(12976091, +), CAediting_1499047(12976115, +), CAediting_1499048(12976272, +), |
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RNA editing positional annotations for TMSB4X using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1499048 | chrX_12976272_+ | nonsynonymous SNV | ENST00000380633.1 | c.A11G | p.K4R | D | P | D |
CAediting_1499048 | chrX_12976272_+ | nonsynonymous SNV | ENST00000380635.4 | c.A11G | p.K4R | D | P | D |
CAediting_1499048 | chrX_12976272_+ | nonsynonymous SNV | ENST00000380636.1 | c.A11G | p.K4R | D | P | D |
CAediting_1499048 | chrX_12976272_+ | nonsynonymous SNV | ENST00000451311.5 | c.A11G | p.K4R | D | P | D |
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CAeditome ID | Position | Variant type |
CAediting_1499046 | chrX_12976091_+ | UTR5 |
CAediting_1499047 | chrX_12976115_+ | UTR5 |
CAediting_1499048 | chrX_12976272_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for TMSB4X |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TMSB4X |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TMSB4X |
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The effects of the RNA editing to the miRNA binding sites for TMSB4X |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for TMSB4X |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TMSB4X |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TMSB4X |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TMSB4X |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TMSB4X |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TMSB4X |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
TMSB4X | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
TMSB4X | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
TMSB4X | C1862939 | AMYOTROPHIC LATERAL SCLEROSIS 1 | 1 | CTD_human |
TMSB4X | C1862941 | Amyotrophic Lateral Sclerosis, Sporadic | 1 | CTD_human |
TMSB4X | C4551993 | Amyotrophic Lateral Sclerosis, Familial | 1 | CTD_human |