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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TRAPPC10 (CAeditome ID:7109)

Gene summary for TRAPPC10

check button Gene summary
Gene informationGene symbol

TRAPPC10

Gene ID

7109

Gene nametrafficking protein particle complex subunit 10
SynonymsEHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30
Cytomap

21q22.3

Type of geneprotein-coding
Descriptiontrafficking protein particle complex subunit 10TRAPP 130 kDa subunitTRAPP subunit TMEM1epilepsy holoprosencephaly candidate-1 proteintrafficking protein particle complex 10trafficking protein particle complex subunit 130trafficking protein particle
Modification date20210518
UniProtAcc

P48553

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TRAPPC10

GO:0030008

Trafficking protein particle complex subunit 10

21525244


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RNA A-to-I events for TRAPPC10

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000160218.11

check button RNA A-to-I editing events in Cancer.
CAediting_1456126(44018247, +), CAediting_1456127(44019169, +), CAediting_1456128(44019230, +), CAediting_1456129(44019324, +), CAediting_1456130(44019332, +), CAediting_1456131(44020333, +), CAediting_1456132(44020616, +), CAediting_1456133(44020618, +), CAediting_1456134(44023810, +), CAediting_1456135(44033742, +), CAediting_1456136(44039603, +), CAediting_1456137(44039611, +), CAediting_1456138(44039612, +), CAediting_1456139(44039617, +), CAediting_1456140(44039620, +), CAediting_1456141(44039655, +), CAediting_1456142(44039664, +), CAediting_1456143(44039679, +), CAediting_1456144(44039689, +), CAediting_1456145(44039700, +), CAediting_1456146(44039705, +), CAediting_1456147(44039706, +), CAediting_1456148(44039718, +), CAediting_1456149(44039734, +), CAediting_1456150(44039744, +), CAediting_1456151(44039745, +), CAediting_1456152(44039750, +), CAediting_1456153(44039767, +), CAediting_1456154(44039771, +), CAediting_1456155(44039785, +), CAediting_1456156(44039786, +), CAediting_1456157(44039793, +), CAediting_1456158(44039805, +), CAediting_1456159(44039809, +), CAediting_1456160(44039816, +), CAediting_1456161(44039834, +), CAediting_1456162(44039846, +), CAediting_1456163(44039851, +), CAediting_1456164(44039852, +), CAediting_1456165(44040366, +), CAediting_1456166(44040367, +), CAediting_1456167(44040374, +), CAediting_1456168(44040391, +), CAediting_1456169(44040393, +), CAediting_1456170(44040417, +), CAediting_1456171(44040428, +), CAediting_1456172(44040442, +), CAediting_1456173(44040443, +), CAediting_1456174(44040460, +), CAediting_1456175(44040473, +), CAediting_1456176(44040478, +), CAediting_1456177(44040483, +), CAediting_1456178(44040485, +), CAediting_1456179(44040497, +), CAediting_1456180(44040501, +), CAediting_1456181(44040502, +), CAediting_1456182(44040512, +), CAediting_1456183(44040521, +), CAediting_1456184(44040527, +), CAediting_1456185(44040598, +), CAediting_1456186(44040599, +), CAediting_1456187(44040600, +), CAediting_1456188(44040612, +), CAediting_1456189(44040686, +), CAediting_1456190(44040735, +), CAediting_1456191(44040740, +), CAediting_1456192(44040796, +), CAediting_1456193(44040799, +), CAediting_1456194(44040813, +), CAediting_1456195(44040838, +), CAediting_1456196(44040890, +), CAediting_1456197(44040899, +), CAediting_1456198(44041457, +), CAediting_1456199(44041476, +), CAediting_1456200(44041477, +), CAediting_1456201(44041516, +), CAediting_1456202(44041522, +), CAediting_1456203(44041543, +), CAediting_1456204(44041581, +), CAediting_1456205(44041594, +), CAediting_1456206(44041624, +), CAediting_1456207(44041633, +), CAediting_1456208(44041646, +), CAediting_1456209(44041655, +), CAediting_1456210(44041746, +), CAediting_1456211(44041758, +), CAediting_1456212(44041806, +), CAediting_1456213(44041820, +), CAediting_1456214(44041855, +), CAediting_1456215(44041867, +), CAediting_1456216(44041891, +), CAediting_1456217(44041892, +), CAediting_1456218(44041900, +), CAediting_1456219(44041906, +), CAediting_1456220(44041909, +), CAediting_1456221(44041923, +), CAediting_1456222(44041973, +), CAediting_1456223(44041974, +), CAediting_1456224(44041986, +), CAediting_1456225(44041988, +), CAediting_1456226(44041996, +), CAediting_1456227(44044733, +), CAediting_1456228(44044830, +), CAediting_1456229(44050425, +), CAediting_1456230(44051156, +), CAediting_1456231(44051172, +), CAediting_1456232(44055312, +), CAediting_1456233(44055408, +), CAediting_1456234(44060787, +), CAediting_1456235(44060801, +), CAediting_1456236(44067859, +), CAediting_1456237(44067867, +), CAediting_1456238(44067955, +), CAediting_1456239(44068005, +), CAediting_1456240(44068700, +), CAediting_1456241(44068705, +), CAediting_1456242(44068734, +), CAediting_1456243(44068740, +), CAediting_1456244(44068785, +), CAediting_1456245(44069958, +), CAediting_1456246(44069974, +), CAediting_1456247(44075509, +), CAediting_1456248(44075585, +), CAediting_1456249(44075625, +), CAediting_1456250(44075706, +), CAediting_1456251(44075720, +), CAediting_1456252(44081273, +), CAediting_1456253(44081300, +), CAediting_1456254(44081361, +), CAediting_1456255(44081785, +), CAediting_1456256(44081804, +), CAediting_1456257(44081820, +), CAediting_1456258(44081828, +), CAediting_1456259(44081829, +), CAediting_1456260(44081842, +), CAediting_1456261(44091579, +), CAediting_1456262(44093308, +), CAediting_1456263(44093596, +),

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RNA editing positional annotations for TRAPPC10 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1456126chr21_44018247_+intronic
CAediting_1456127chr21_44019169_+intronic
CAediting_1456128chr21_44019230_+intronic
CAediting_1456129chr21_44019324_+intronic
CAediting_1456130chr21_44019332_+intronic
CAediting_1456131chr21_44020333_+intronic
CAediting_1456132chr21_44020616_+intronic
CAediting_1456133chr21_44020618_+intronic
CAediting_1456134chr21_44023810_+intronic
CAediting_1456135chr21_44033742_+intronic
CAediting_1456136chr21_44039603_+intronic
CAediting_1456137chr21_44039611_+intronic
CAediting_1456138chr21_44039612_+intronic
CAediting_1456139chr21_44039617_+intronic
CAediting_1456140chr21_44039620_+intronic
CAediting_1456141chr21_44039655_+intronic
CAediting_1456142chr21_44039664_+intronic
CAediting_1456143chr21_44039679_+intronic
CAediting_1456144chr21_44039689_+intronic
CAediting_1456145chr21_44039700_+intronic
CAediting_1456146chr21_44039705_+intronic
CAediting_1456147chr21_44039706_+intronic
CAediting_1456148chr21_44039718_+intronic
CAediting_1456149chr21_44039734_+intronic
CAediting_1456150chr21_44039744_+intronic
CAediting_1456151chr21_44039745_+intronic
CAediting_1456152chr21_44039750_+intronic
CAediting_1456153chr21_44039767_+intronic
CAediting_1456154chr21_44039771_+intronic
CAediting_1456155chr21_44039785_+intronic
CAediting_1456156chr21_44039786_+intronic
CAediting_1456157chr21_44039793_+intronic
CAediting_1456158chr21_44039805_+intronic
CAediting_1456159chr21_44039809_+intronic
CAediting_1456160chr21_44039816_+intronic
CAediting_1456161chr21_44039834_+intronic
CAediting_1456162chr21_44039846_+intronic
CAediting_1456163chr21_44039851_+intronic
CAediting_1456164chr21_44039852_+intronic
CAediting_1456165chr21_44040366_+intronic
CAediting_1456166chr21_44040367_+intronic
CAediting_1456167chr21_44040374_+intronic
CAediting_1456168chr21_44040391_+intronic
CAediting_1456169chr21_44040393_+intronic
CAediting_1456170chr21_44040417_+intronic
CAediting_1456171chr21_44040428_+intronic
CAediting_1456172chr21_44040442_+intronic
CAediting_1456173chr21_44040443_+intronic
CAediting_1456174chr21_44040460_+intronic
CAediting_1456175chr21_44040473_+intronic
CAediting_1456176chr21_44040478_+intronic
CAediting_1456177chr21_44040483_+intronic
CAediting_1456178chr21_44040485_+intronic
CAediting_1456179chr21_44040497_+intronic
CAediting_1456180chr21_44040501_+intronic
CAediting_1456181chr21_44040502_+intronic
CAediting_1456182chr21_44040512_+intronic
CAediting_1456183chr21_44040521_+intronic
CAediting_1456184chr21_44040527_+intronic
CAediting_1456185chr21_44040598_+intronic
CAediting_1456186chr21_44040599_+intronic
CAediting_1456187chr21_44040600_+intronic
CAediting_1456188chr21_44040612_+intronic
CAediting_1456189chr21_44040686_+intronic
CAediting_1456190chr21_44040735_+intronic
CAediting_1456191chr21_44040740_+intronic
CAediting_1456192chr21_44040796_+intronic
CAediting_1456193chr21_44040799_+intronic
CAediting_1456194chr21_44040813_+intronic
CAediting_1456195chr21_44040838_+intronic
CAediting_1456196chr21_44040890_+intronic
CAediting_1456197chr21_44040899_+intronic
CAediting_1456198chr21_44041457_+intronic
CAediting_1456199chr21_44041476_+intronic
CAediting_1456200chr21_44041477_+intronic
CAediting_1456201chr21_44041516_+intronic
CAediting_1456202chr21_44041522_+intronic
CAediting_1456203chr21_44041543_+intronic
CAediting_1456204chr21_44041581_+intronic
CAediting_1456205chr21_44041594_+intronic
CAediting_1456206chr21_44041624_+intronic
CAediting_1456207chr21_44041633_+intronic
CAediting_1456208chr21_44041646_+intronic
CAediting_1456209chr21_44041655_+intronic
CAediting_1456210chr21_44041746_+intronic
CAediting_1456211chr21_44041758_+intronic
CAediting_1456212chr21_44041806_+intronic
CAediting_1456213chr21_44041820_+intronic
CAediting_1456214chr21_44041855_+intronic
CAediting_1456215chr21_44041867_+intronic
CAediting_1456216chr21_44041891_+intronic
CAediting_1456217chr21_44041892_+intronic
CAediting_1456218chr21_44041900_+intronic
CAediting_1456219chr21_44041906_+intronic
CAediting_1456220chr21_44041909_+intronic
CAediting_1456221chr21_44041923_+intronic
CAediting_1456222chr21_44041973_+intronic
CAediting_1456223chr21_44041974_+intronic
CAediting_1456224chr21_44041986_+intronic
CAediting_1456225chr21_44041988_+intronic
CAediting_1456226chr21_44041996_+intronic
CAediting_1456227chr21_44044733_+intronic
CAediting_1456228chr21_44044830_+intronic
CAediting_1456229chr21_44050425_+intronic
CAediting_1456230chr21_44051156_+intronic
CAediting_1456231chr21_44051172_+intronic
CAediting_1456232chr21_44055312_+intronic
CAediting_1456233chr21_44055408_+intronic
CAediting_1456234chr21_44060787_+intronic
CAediting_1456235chr21_44060801_+intronic
CAediting_1456236chr21_44067859_+intronic
CAediting_1456237chr21_44067867_+intronic
CAediting_1456238chr21_44067955_+intronic
CAediting_1456239chr21_44068005_+intronic
CAediting_1456240chr21_44068700_+intronic
CAediting_1456241chr21_44068705_+intronic
CAediting_1456242chr21_44068734_+intronic
CAediting_1456243chr21_44068740_+intronic
CAediting_1456244chr21_44068785_+intronic
CAediting_1456245chr21_44069958_+intronic
CAediting_1456246chr21_44069974_+intronic
CAediting_1456247chr21_44075509_+intronic
CAediting_1456248chr21_44075585_+intronic
CAediting_1456249chr21_44075625_+intronic
CAediting_1456250chr21_44075706_+intronic
CAediting_1456251chr21_44075720_+intronic
CAediting_1456252chr21_44081273_+ncRNA_intronic
CAediting_1456253chr21_44081300_+ncRNA_intronic
CAediting_1456254chr21_44081361_+ncRNA_intronic
CAediting_1456255chr21_44081785_+ncRNA_intronic
CAediting_1456256chr21_44081804_+ncRNA_intronic
CAediting_1456257chr21_44081820_+ncRNA_intronic
CAediting_1456258chr21_44081828_+ncRNA_intronic
CAediting_1456259chr21_44081829_+ncRNA_intronic
CAediting_1456260chr21_44081842_+ncRNA_intronic
CAediting_1456261chr21_44091579_+ncRNA_intronic
CAediting_1456262chr21_44093308_+ncRNA_intronic
CAediting_1456263chr21_44093596_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1456126chr21_44018247_+SINEAluAluJb
CAediting_1456127chr21_44019169_+SINEAluAluJb
CAediting_1456128chr21_44019230_+SINEAluAluJb
CAediting_1456129chr21_44019324_+SINEAluAluJb
CAediting_1456130chr21_44019332_+SINEAluAluJb
CAediting_1456131chr21_44020333_+SINEAluAluY
CAediting_1456132chr21_44020616_+SINEAluAluJr
CAediting_1456133chr21_44020618_+SINEAluAluJr
CAediting_1456134chr21_44023810_+SINEAluAluSx
CAediting_1456135chr21_44033742_+SINEAluAluJo
CAediting_1456136chr21_44039603_+SINEAluAluSg
CAediting_1456137chr21_44039611_+SINEAluAluSg
CAediting_1456138chr21_44039612_+SINEAluAluSg
CAediting_1456139chr21_44039617_+SINEAluAluSg
CAediting_1456140chr21_44039620_+SINEAluAluSg
CAediting_1456141chr21_44039655_+SINEAluAluSg
CAediting_1456142chr21_44039664_+SINEAluAluSg
CAediting_1456143chr21_44039679_+SINEAluAluSg
CAediting_1456144chr21_44039689_+SINEAluAluSg
CAediting_1456145chr21_44039700_+SINEAluAluSg
CAediting_1456146chr21_44039705_+SINEAluAluSg
CAediting_1456147chr21_44039706_+SINEAluAluSg
CAediting_1456148chr21_44039718_+SINEAluAluSg
CAediting_1456149chr21_44039734_+SINEAluAluSg
CAediting_1456150chr21_44039744_+SINEAluAluSg
CAediting_1456151chr21_44039745_+SINEAluAluSg
CAediting_1456152chr21_44039750_+SINEAluAluSg
CAediting_1456153chr21_44039767_+SINEAluAluSg
CAediting_1456154chr21_44039771_+SINEAluAluSg
CAediting_1456155chr21_44039785_+SINEAluAluSg
CAediting_1456156chr21_44039786_+SINEAluAluSg
CAediting_1456157chr21_44039793_+SINEAluAluSg
CAediting_1456158chr21_44039805_+SINEAluAluSg
CAediting_1456159chr21_44039809_+SINEAluAluSg
CAediting_1456160chr21_44039816_+SINEAluAluSg
CAediting_1456161chr21_44039834_+SINEAluAluSg
CAediting_1456162chr21_44039846_+SINEAluAluSg
CAediting_1456163chr21_44039851_+SINEAluAluSg
CAediting_1456164chr21_44039852_+SINEAluAluSg
CAediting_1456165chr21_44040366_+SINEAluAluJb
CAediting_1456166chr21_44040367_+SINEAluAluJb
CAediting_1456167chr21_44040374_+SINEAluAluJb
CAediting_1456168chr21_44040391_+SINEAluAluJb
CAediting_1456169chr21_44040393_+SINEAluAluJb
CAediting_1456170chr21_44040417_+SINEAluAluJb
CAediting_1456171chr21_44040428_+SINEAluAluJb
CAediting_1456172chr21_44040442_+SINEAluAluJb
CAediting_1456173chr21_44040443_+SINEAluAluJb
CAediting_1456174chr21_44040460_+SINEAluAluJb
CAediting_1456175chr21_44040473_+SINEAluAluJb
CAediting_1456176chr21_44040478_+SINEAluAluJb
CAediting_1456177chr21_44040483_+SINEAluAluJb
CAediting_1456178chr21_44040485_+SINEAluAluJb
CAediting_1456179chr21_44040497_+SINEAluAluJb
CAediting_1456180chr21_44040501_+SINEAluAluJb
CAediting_1456181chr21_44040502_+SINEAluAluJb
CAediting_1456182chr21_44040512_+SINEAluAluJb
CAediting_1456183chr21_44040521_+SINEAluAluJb
CAediting_1456184chr21_44040527_+SINEAluAluJb
CAediting_1456185chr21_44040598_+SINEAluAluJb
CAediting_1456186chr21_44040599_+SINEAluAluJb
CAediting_1456187chr21_44040600_+SINEAluAluJb
CAediting_1456188chr21_44040612_+SINEAluAluJb
CAediting_1456189chr21_44040686_+SINEAluAluJb
CAediting_1456190chr21_44040735_+SINEAluAluJb
CAediting_1456191chr21_44040740_+SINEAluAluJb
CAediting_1456192chr21_44040796_+SINEAluAluJb
CAediting_1456193chr21_44040799_+SINEAluAluJb
CAediting_1456194chr21_44040813_+SINEAluAluJb
CAediting_1456195chr21_44040838_+SINEAluAluJb
CAediting_1456196chr21_44040890_+SINEAluAluJb
CAediting_1456197chr21_44040899_+SINEAluAluJb
CAediting_1456198chr21_44041457_+SINEAluAluSp
CAediting_1456199chr21_44041476_+SINEAluAluSp
CAediting_1456200chr21_44041477_+SINEAluAluSp
CAediting_1456201chr21_44041516_+SINEAluAluSp
CAediting_1456202chr21_44041522_+SINEAluAluSp
CAediting_1456203chr21_44041543_+SINEAluAluSp
CAediting_1456204chr21_44041581_+SINEAluAluSp
CAediting_1456205chr21_44041594_+SINEAluAluSp
CAediting_1456206chr21_44041624_+SINEAluAluSp
CAediting_1456207chr21_44041633_+SINEAluAluSp
CAediting_1456208chr21_44041646_+SINEAluAluSp
CAediting_1456209chr21_44041655_+SINEAluAluSp
CAediting_1456210chr21_44041746_+SINEAluAluSx1
CAediting_1456211chr21_44041758_+SINEAluAluSx1
CAediting_1456212chr21_44041806_+SINEAluAluSx1
CAediting_1456213chr21_44041820_+SINEAluAluSx1
CAediting_1456214chr21_44041855_+SINEAluAluSx1
CAediting_1456215chr21_44041867_+SINEAluAluSx1
CAediting_1456216chr21_44041891_+SINEAluAluSx1
CAediting_1456217chr21_44041892_+SINEAluAluSx1
CAediting_1456218chr21_44041900_+SINEAluAluSx1
CAediting_1456219chr21_44041906_+SINEAluAluSx1
CAediting_1456220chr21_44041909_+SINEAluAluSx1
CAediting_1456221chr21_44041923_+SINEAluAluSx1
CAediting_1456222chr21_44041973_+SINEAluAluSx1
CAediting_1456223chr21_44041974_+SINEAluAluSx1
CAediting_1456224chr21_44041986_+SINEAluAluSx1
CAediting_1456225chr21_44041988_+SINEAluAluSx1
CAediting_1456226chr21_44041996_+SINEAluAluSx1
CAediting_1456227chr21_44044733_+SINEAluAluSq
CAediting_1456228chr21_44044830_+SINEAluAluSq
CAediting_1456230chr21_44051156_+SINEAluAluSx
CAediting_1456231chr21_44051172_+SINEAluAluSx
CAediting_1456232chr21_44055312_+SINEAluAluJo
CAediting_1456233chr21_44055408_+SINEAluAluJo
CAediting_1456234chr21_44060787_+SINEAluAluSz6
CAediting_1456235chr21_44060801_+SINEAluAluSz6
CAediting_1456236chr21_44067859_+SINEAluAluSx1
CAediting_1456237chr21_44067867_+SINEAluAluSx1
CAediting_1456238chr21_44067955_+SINEAluAluSx1
CAediting_1456239chr21_44068005_+SINEAluAluSx1
CAediting_1456240chr21_44068700_+SINEAluAluSz
CAediting_1456241chr21_44068705_+SINEAluAluSz
CAediting_1456242chr21_44068734_+SINEAluAluSz
CAediting_1456243chr21_44068740_+SINEAluAluSz
CAediting_1456244chr21_44068785_+SINEAluAluSz
CAediting_1456245chr21_44069958_+SINEAluAluSx3
CAediting_1456246chr21_44069974_+SINEAluAluSx3
CAediting_1456247chr21_44075509_+SINEAluAluJr
CAediting_1456248chr21_44075585_+SINEAluAluJr
CAediting_1456249chr21_44075625_+SINEAluAluJr
CAediting_1456250chr21_44075706_+SINEAluAluJr
CAediting_1456251chr21_44075720_+SINEAluAluJr
CAediting_1456252chr21_44081273_+SINEAluAluJo
CAediting_1456253chr21_44081300_+SINEAluAluJo
CAediting_1456254chr21_44081361_+SINEAluAluJo
CAediting_1456255chr21_44081785_+SINEAluAluJb
CAediting_1456256chr21_44081804_+SINEAluAluJb
CAediting_1456257chr21_44081820_+SINEAluAluJb
CAediting_1456258chr21_44081828_+SINEAluAluJb
CAediting_1456259chr21_44081829_+SINEAluAluJb
CAediting_1456260chr21_44081842_+SINEAluAluJb
CAediting_1456261chr21_44091579_+SINEAluAluSc
CAediting_1456262chr21_44093308_+SINEAluAluJb
CAediting_1456263chr21_44093596_+SINEAluAluSx3

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RNA A-to-I editing events in the alternative splicing sites for TRAPPC10

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000160218.11.TRAPPC10.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000160218.11.TRAPPC10.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRAPPC10

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TRAPPC10

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TRAPPC10

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000160218.11ENST00000291574hsa-miR-624-3p44104226441042327mer-m84410421344104233150-17.08
CAediting_980496chr14_31014685_-ENSG00000160218.11ENST00000422875hsa-miR-624-3p44063650440636567mer-m84406363744063657140-15.63
CAediting_748296chr10_51299626_+ENSG00000160218.11ENST00000422875hsa-miR-605-3p44083204440832118mer-1a4408318844083211154-20.5
CAediting_1306324chr19_13836464_-ENSG00000160218.11ENST00000422875hsa-miR-27a-3p44082824440828307mer-m84408280944082831149-17.36
CAediting_393chr1_1167164_+ENSG00000160218.11ENST00000422875hsa-miR-200b-3p44082956440829627mer-m84408294044082963150-16.14
CAediting_846604chr11_93733708_-ENSG00000160218.11ENST00000422875hsa-miR-1304-3p44103395441034017mer-m84410337944103402153-21.18
CAediting_980496chr14_31014685_-ENSG00000160218.11ENST00000422875hsa-miR-624-3p44104226441042327mer-m84410421344104233150-17.08
CAediting_86358chr1_109598906_+ENSG00000160218.11ENST00000291574hsa-miR-197-5p44103820441038278mer-1a4410380544103827148-21.88
CAediting_442554chr5_154685830_+ENSG00000160218.11ENST00000291574hsa-miR-130344104725441047328mer-1a4410471044104732144-15.24
CAediting_604450chr7_133034877_-ENSG00000160218.11ENST00000291574hsa-miR-365444104834441048418mer-1a4410482344104841140-16.16
CAediting_1160181chr17_7017644_-ENSG00000160218.11ENST00000380221hsa-miR-195-3p44059708440597147mer-m84405969644059715146-20.15
CAediting_1160181chr17_7017644_-ENSG00000160218.11ENST00000422875hsa-miR-195-3p44074425440744317mer-m84407440944074432145-15.61
CAediting_524911chr7_5495852_-ENSG00000160218.11ENST00000422875hsa-miR-589-3p44074340440743467mer-m84407432444074347140-21.01
CAediting_86358chr1_109598906_+ENSG00000160218.11ENST00000422875hsa-miR-197-5p44083034440830407mer-m84408302044083041153-28.57
CAediting_77128chr1_85133844_+ENSG00000160218.11ENST00000422875hsa-miR-4423-3p44083231440832377mer-m84408321844083238145-17.55
CAediting_1399425chr20_1392958_-ENSG00000160218.11ENST00000422875hsa-miR-6869-5p44082801440828077mer-m84408278744082808142-15.96
CAediting_573000chr7_92204081_-ENSG00000160218.11ENST00000422875hsa-miR-1285-5p44082827440828337mer-m84408281444082834149-23.3
CAediting_1368054chr19_46709310_-ENSG00000160218.11ENST00000422875hsa-miR-320e44103460441034667mer-m84410344944103467159-20.71
CAediting_86358chr1_109598906_+ENSG00000160218.11ENST00000422875hsa-miR-197-5p44103820441038278mer-1a4410380544103827148-21.88
CAediting_1399425chr20_1392958_-ENSG00000160218.11ENST00000422875hsa-miR-6869-5p44103411441034177mer-m84410339144103418145-24.41
CAediting_396018chr5_1062918_-ENSG00000160218.11ENST00000422875hsa-miR-463544103359441033668mer-1a4410334644103366141-16.22
CAediting_442554chr5_154685830_+ENSG00000160218.11ENST00000422875hsa-miR-130344104725441047328mer-1a4410471044104732144-15.24

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000160218.11ENST00000291574hsa-miR-200b-3p44104989441049957mer-m84410497944104996147-13.42
CAediting_1524209chrX_134546392_-ENSG00000160218.11ENST00000291574hsa-miR-503-5p44103803441038097mer-m84410378844103810142-12.81
CAediting_1229413chr17_67471544_+ENSG00000160218.11ENST00000291574hsa-miR-548aa44105744441057507mer-m84410572744105751151-12.38
CAediting_1229414chr17_67471546_+ENSG00000160218.11ENST00000291574hsa-miR-548aa44105744441057507mer-m84410572744105751151-12.38
CAediting_1229413chr17_67471544_+ENSG00000160218.11ENST00000291574hsa-miR-548aa44106261441062677mer-m84410624044106268148-7.24
CAediting_1229414chr17_67471546_+ENSG00000160218.11ENST00000291574hsa-miR-548aa44106261441062677mer-m84410624044106268148-7.24
CAediting_228905chr2_188297554_+ENSG00000160218.11ENST00000291574hsa-miR-561-3p44105113441051197mer-m84410509944105120150-6
CAediting_1399425chr20_1392958_-ENSG00000160218.11ENST00000291574hsa-miR-6869-5p44103767441037726mer4410375144103773140-28.19
CAediting_748296chr10_51299626_+ENSG00000160218.11ENST00000380221hsa-miR-605-3p44059549440595557mer-m84405953544059556144-11.6
CAediting_1524209chrX_134546392_-ENSG00000160218.11ENST00000422875hsa-miR-503-5p44103803441038097mer-m84410378844103810142-12.81
CAediting_1399425chr20_1392958_-ENSG00000160218.11ENST00000422875hsa-miR-6869-5p44103767441037726mer4410375144103773140-28.19

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TRAPPC10

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TRAPPC10

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for TRAPPC10

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for TRAPPC10

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for TRAPPC10

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TRAPPC10

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
TRAPPC10C0037274Dermatologic disorders1CTD_human
TRAPPC10C0274861Arsenic Poisoning, Inorganic1CTD_human
TRAPPC10C0274862Nervous System, Organic Arsenic Poisoning1CTD_human
TRAPPC10C0311375Arsenic Poisoning1CTD_human
TRAPPC10C0751851Arsenic Encephalopathy1CTD_human
TRAPPC10C0751852Arsenic Induced Polyneuropathy1CTD_human