![]() |
||||||
|
![]() | |
![]() | |
![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
![]() | |
![]() | |
![]() | The effects of the RNA editing to the stability of the RNA structures |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Editing gene: TGM2 (CAeditome ID:7052) |
Gene summary for TGM2 |
![]() |
Gene information | Gene symbol | TGM2 | Gene ID | 7052 |
Gene name | transglutaminase 2 | |
Synonyms | G(h)|TG(C)|TGC|hTG2|tTG | |
Cytomap | 20q11.23 | |
Type of gene | protein-coding | |
Description | protein-glutamine gamma-glutamyltransferase 2C polypeptide, protein-glutamine-gamma-glutamyltransferaseTGase CTGase HTGase IITGase-2erythrocyte transglutaminaseheart G alpha(h)hhG alpha(h)isopeptidase TGM2protein G alpha(h)protein-glutamine dea | |
Modification date | 20210518 | |
UniProtAcc | P21980 | |
Context |
![]() |
Gene | GO ID | GO term | PubMed ID |
TGM2 | GO:0003810 | Protein-glutamine gamma-glutamyltransferase 2 | 12506096 |
TGM2 | GO:0003810 | Protein-glutamine gamma-glutamyltransferase 2 | 23941696 |
TGM2 | GO:0003810 | Protein-glutamine gamma-glutamyltransferase 2 | 7649299 |
TGM2 | GO:0003810 | Protein-glutamine gamma-glutamyltransferase 2 | 9252372 |
TGM2 | GO:0005509 | Protein-glutamine gamma-glutamyltransferase 2 | 23941696 |
TGM2 | GO:0005525 | Protein-glutamine gamma-glutamyltransferase 2 | 7649299 |
TGM2 | GO:0050568 | Protein-glutamine gamma-glutamyltransferase 2 | 20547769 |
TGM2 | GO:0050568 | Protein-glutamine gamma-glutamyltransferase 2 | 9623982 |
TGM2 | GO:0120295 | Protein-glutamine gamma-glutamyltransferase 2 | 30867594 |
TGM2 | GO:0120297 | Protein-glutamine gamma-glutamyltransferase 2 | 32273471 |
TGM2 | GO:0120299 | Protein-glutamine gamma-glutamyltransferase 2 | 23797785 |
TGM2 | GO:0018149 | Protein-glutamine gamma-glutamyltransferase 2 | 12506096 |
TGM2 | GO:0018149 | Protein-glutamine gamma-glutamyltransferase 2 | 23941696 |
TGM2 | GO:0018149 | Protein-glutamine gamma-glutamyltransferase 2 | 30458214 |
TGM2 | GO:0018149 | Protein-glutamine gamma-glutamyltransferase 2 | 9252372 |
TGM2 | GO:0018277 | Protein-glutamine gamma-glutamyltransferase 2 | 20547769 |
TGM2 | GO:0018277 | Protein-glutamine gamma-glutamyltransferase 2 | 9623982 |
TGM2 | GO:0042981 | Protein-glutamine gamma-glutamyltransferase 2 | 9252372 |
TGM2 | GO:0043277 | Protein-glutamine gamma-glutamyltransferase 2 | 19628791 |
TGM2 | GO:0050769 | Protein-glutamine gamma-glutamyltransferase 2 | 30867594 |
TGM2 | GO:0071314 | Protein-glutamine gamma-glutamyltransferase 2 | 32273471 |
TGM2 | GO:1903351 | Protein-glutamine gamma-glutamyltransferase 2 | 32273471 |
TGM2 | GO:1904015 | Protein-glutamine gamma-glutamyltransferase 2 | 30867594 |
TGM2 | GO:2000425 | Protein-glutamine gamma-glutamyltransferase 2 | 7935379 |
TGM2 | GO:0000785 | Protein-glutamine gamma-glutamyltransferase 2 | 9575137 |
TGM2 | GO:0005634 | Protein-glutamine gamma-glutamyltransferase 2 | 9575137 |
TGM2 | GO:0005739 | Protein-glutamine gamma-glutamyltransferase 2 | 24349085 |
TGM2 | GO:0005829 | Protein-glutamine gamma-glutamyltransferase 2 | 0000052 |
TGM2 | GO:0005829 | Protein-glutamine gamma-glutamyltransferase 2 | 24349085 |
TGM2 | GO:0005829 | Protein-glutamine gamma-glutamyltransferase 2 | 9575137 |
TGM2 | GO:0005886 | Protein-glutamine gamma-glutamyltransferase 2 | 0000052 |
TGM2 | GO:0031012 | Protein-glutamine gamma-glutamyltransferase 2 | 12506096 |
TGM2 | GO:0031226 | Protein-glutamine gamma-glutamyltransferase 2 | 2578891 |
Top |
RNA A-to-I events for TGM2 |
![]() |
![]() |
![]() |
![]() |
![]() |
CAediting_1427201(38129483, -), CAediting_1427202(38129486, -), CAediting_1427203(38133863, -), CAediting_1427204(38133879, -), CAediting_1427205(38133899, -), CAediting_1427206(38135595, -), CAediting_1427207(38135619, -), CAediting_1427208(38135680, -), CAediting_1427209(38137151, -), CAediting_1427210(38142622, -), CAediting_1427211(38142623, -), CAediting_1427212(38142626, -), CAediting_1427213(38142633, -), CAediting_1427214(38142646, -), CAediting_1427215(38142649, -), CAediting_1427216(38142695, -), CAediting_1427217(38143875, -), CAediting_1427218(38144228, -), CAediting_1427219(38144248, -), CAediting_1427220(38144288, -), CAediting_1427221(38145498, -), CAediting_1427222(38145503, -), CAediting_1427223(38145508, -), CAediting_1427224(38145544, -), CAediting_1427225(38145687, -), CAediting_1427226(38145717, -), CAediting_1427227(38145723, -), CAediting_1427228(38145845, -), CAediting_1427229(38145846, -), CAediting_1427230(38145875, -), CAediting_1427231(38145879, -), CAediting_1427232(38145883, -), CAediting_1427233(38145889, -), CAediting_1427234(38145896, -), CAediting_1427235(38145906, -), CAediting_1427236(38145973, -), CAediting_1427237(38153425, -), CAediting_1427238(38153462, -), CAediting_1427239(38153909, -), CAediting_1427240(38153925, -), CAediting_1427241(38153932, -), CAediting_1427242(38153941, -), CAediting_1427243(38153945, -), CAediting_1427244(38153948, -), CAediting_1427245(38153955, -), CAediting_1427246(38153965, -), CAediting_1427247(38153987, -), CAediting_1427248(38153995, -), CAediting_1427249(38153996, -), CAediting_1427250(38154037, -), CAediting_1427251(38154076, -), CAediting_1427252(38154090, -), CAediting_1427253(38154097, -), CAediting_1427254(38154926, -), CAediting_1427255(38155067, -), CAediting_1427256(38155404, -), CAediting_1427257(38155434, -), CAediting_1427258(38155444, -), CAediting_1427259(38155470, -), CAediting_1427260(38155565, -), CAediting_1427261(38155620, -), CAediting_1427262(38155621, -), CAediting_1427263(38160846, -), |
Top |
RNA editing positional annotations for TGM2 using Annovar |
![]() |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
![]() |
CAeditome ID | Position | Variant type |
CAediting_1427201 | chr20_38129483_- | ncRNA_exonic |
CAediting_1427202 | chr20_38129486_- | ncRNA_exonic |
CAediting_1427203 | chr20_38133863_- | intronic |
CAediting_1427204 | chr20_38133879_- | intronic |
CAediting_1427205 | chr20_38133899_- | intronic |
CAediting_1427206 | chr20_38135595_- | intronic |
CAediting_1427207 | chr20_38135619_- | intronic |
CAediting_1427208 | chr20_38135680_- | intronic |
CAediting_1427209 | chr20_38137151_- | intronic |
CAediting_1427210 | chr20_38142622_- | ncRNA_intronic |
CAediting_1427211 | chr20_38142623_- | ncRNA_intronic |
CAediting_1427212 | chr20_38142626_- | ncRNA_intronic |
CAediting_1427213 | chr20_38142633_- | ncRNA_intronic |
CAediting_1427214 | chr20_38142646_- | ncRNA_intronic |
CAediting_1427215 | chr20_38142649_- | ncRNA_intronic |
CAediting_1427216 | chr20_38142695_- | ncRNA_intronic |
CAediting_1427217 | chr20_38143875_- | ncRNA_intronic |
CAediting_1427218 | chr20_38144228_- | ncRNA_intronic |
CAediting_1427219 | chr20_38144248_- | ncRNA_intronic |
CAediting_1427220 | chr20_38144288_- | ncRNA_intronic |
CAediting_1427221 | chr20_38145498_- | ncRNA_exonic |
CAediting_1427222 | chr20_38145503_- | ncRNA_exonic |
CAediting_1427223 | chr20_38145508_- | ncRNA_exonic |
CAediting_1427224 | chr20_38145544_- | ncRNA_exonic |
CAediting_1427225 | chr20_38145687_- | ncRNA_exonic |
CAediting_1427226 | chr20_38145717_- | ncRNA_exonic |
CAediting_1427227 | chr20_38145723_- | ncRNA_exonic |
CAediting_1427228 | chr20_38145845_- | ncRNA_exonic |
CAediting_1427229 | chr20_38145846_- | ncRNA_exonic |
CAediting_1427230 | chr20_38145875_- | ncRNA_exonic |
CAediting_1427231 | chr20_38145879_- | ncRNA_exonic |
CAediting_1427232 | chr20_38145883_- | ncRNA_exonic |
CAediting_1427233 | chr20_38145889_- | ncRNA_exonic |
CAediting_1427234 | chr20_38145896_- | ncRNA_exonic |
CAediting_1427235 | chr20_38145906_- | ncRNA_exonic |
CAediting_1427236 | chr20_38145973_- | ncRNA_exonic |
CAediting_1427237 | chr20_38153425_- | ncRNA_intronic |
CAediting_1427238 | chr20_38153462_- | ncRNA_intronic |
CAediting_1427239 | chr20_38153909_- | ncRNA_intronic |
CAediting_1427240 | chr20_38153925_- | ncRNA_intronic |
CAediting_1427241 | chr20_38153932_- | ncRNA_intronic |
CAediting_1427242 | chr20_38153941_- | ncRNA_intronic |
CAediting_1427243 | chr20_38153945_- | ncRNA_intronic |
CAediting_1427244 | chr20_38153948_- | ncRNA_intronic |
CAediting_1427245 | chr20_38153955_- | ncRNA_intronic |
CAediting_1427246 | chr20_38153965_- | ncRNA_intronic |
CAediting_1427247 | chr20_38153987_- | ncRNA_intronic |
CAediting_1427248 | chr20_38153995_- | ncRNA_intronic |
CAediting_1427249 | chr20_38153996_- | ncRNA_intronic |
CAediting_1427250 | chr20_38154037_- | ncRNA_intronic |
CAediting_1427251 | chr20_38154076_- | ncRNA_intronic |
CAediting_1427252 | chr20_38154090_- | ncRNA_intronic |
CAediting_1427253 | chr20_38154097_- | ncRNA_intronic |
CAediting_1427254 | chr20_38154926_- | ncRNA_intronic |
CAediting_1427255 | chr20_38155067_- | ncRNA_intronic |
CAediting_1427256 | chr20_38155404_- | ncRNA_intronic |
CAediting_1427257 | chr20_38155434_- | ncRNA_intronic |
CAediting_1427258 | chr20_38155444_- | ncRNA_intronic |
CAediting_1427259 | chr20_38155470_- | ncRNA_intronic |
CAediting_1427260 | chr20_38155565_- | ncRNA_intronic |
CAediting_1427261 | chr20_38155620_- | ncRNA_intronic |
CAediting_1427262 | chr20_38155621_- | ncRNA_intronic |
CAediting_1427263 | chr20_38160846_- | ncRNA_intronic |
![]() |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1427203 | chr20_38133863_- | SINE | Alu | AluJb |
CAediting_1427204 | chr20_38133879_- | SINE | Alu | AluJb |
CAediting_1427205 | chr20_38133899_- | SINE | Alu | AluJb |
CAediting_1427206 | chr20_38135595_- | SINE | MIR | MIR3 |
CAediting_1427209 | chr20_38137151_- | DNA | hAT-Charlie | MER3 |
CAediting_1427210 | chr20_38142622_- | SINE | Alu | AluSx |
CAediting_1427211 | chr20_38142623_- | SINE | Alu | AluSx |
CAediting_1427212 | chr20_38142626_- | SINE | Alu | AluSx |
CAediting_1427213 | chr20_38142633_- | SINE | Alu | AluSx |
CAediting_1427214 | chr20_38142646_- | SINE | Alu | AluSx |
CAediting_1427215 | chr20_38142649_- | SINE | Alu | AluSx |
CAediting_1427216 | chr20_38142695_- | SINE | Alu | AluSx |
CAediting_1427218 | chr20_38144228_- | SINE | MIR | MIRb |
CAediting_1427219 | chr20_38144248_- | SINE | MIR | MIRb |
CAediting_1427220 | chr20_38144288_- | SINE | MIR | MIRb |
CAediting_1427221 | chr20_38145498_- | SINE | Alu | AluJb |
CAediting_1427222 | chr20_38145503_- | SINE | Alu | AluJb |
CAediting_1427223 | chr20_38145508_- | SINE | Alu | AluJb |
CAediting_1427224 | chr20_38145544_- | SINE | Alu | AluJb |
CAediting_1427225 | chr20_38145687_- | SINE | MIR | MIR |
CAediting_1427226 | chr20_38145717_- | SINE | MIR | MIR |
CAediting_1427227 | chr20_38145723_- | SINE | MIR | MIR |
CAediting_1427228 | chr20_38145845_- | SINE | Alu | AluJr |
CAediting_1427229 | chr20_38145846_- | SINE | Alu | AluJr |
CAediting_1427230 | chr20_38145875_- | SINE | Alu | AluJr |
CAediting_1427231 | chr20_38145879_- | SINE | Alu | AluJr |
CAediting_1427232 | chr20_38145883_- | SINE | Alu | AluJr |
CAediting_1427233 | chr20_38145889_- | SINE | Alu | AluJr |
CAediting_1427234 | chr20_38145896_- | SINE | Alu | AluJr |
CAediting_1427235 | chr20_38145906_- | SINE | Alu | AluJr |
CAediting_1427236 | chr20_38145973_- | SINE | Alu | AluJr |
CAediting_1427237 | chr20_38153425_- | SINE | Alu | AluSx |
CAediting_1427238 | chr20_38153462_- | SINE | Alu | AluSx |
CAediting_1427239 | chr20_38153909_- | SINE | Alu | AluJb |
CAediting_1427240 | chr20_38153925_- | SINE | Alu | AluJb |
CAediting_1427241 | chr20_38153932_- | SINE | Alu | AluJb |
CAediting_1427242 | chr20_38153941_- | SINE | Alu | AluJb |
CAediting_1427243 | chr20_38153945_- | SINE | Alu | AluJb |
CAediting_1427244 | chr20_38153948_- | SINE | Alu | AluJb |
CAediting_1427245 | chr20_38153955_- | SINE | Alu | AluJb |
CAediting_1427246 | chr20_38153965_- | SINE | Alu | AluJb |
CAediting_1427247 | chr20_38153987_- | SINE | Alu | AluJb |
CAediting_1427248 | chr20_38153995_- | SINE | Alu | AluJb |
CAediting_1427249 | chr20_38153996_- | SINE | Alu | AluJb |
CAediting_1427250 | chr20_38154037_- | SINE | Alu | AluJb |
CAediting_1427251 | chr20_38154076_- | SINE | Alu | AluJb |
CAediting_1427252 | chr20_38154090_- | SINE | Alu | AluJb |
CAediting_1427253 | chr20_38154097_- | SINE | Alu | AluJb |
CAediting_1427254 | chr20_38154926_- | SINE | Alu | AluSq2 |
CAediting_1427255 | chr20_38155067_- | SINE | Alu | AluSq2 |
CAediting_1427256 | chr20_38155404_- | SINE | Alu | AluJr |
CAediting_1427257 | chr20_38155434_- | SINE | Alu | AluJr |
CAediting_1427258 | chr20_38155444_- | SINE | Alu | AluJr |
CAediting_1427259 | chr20_38155470_- | SINE | Alu | AluJr |
CAediting_1427260 | chr20_38155565_- | SINE | Alu | AluJr |
CAediting_1427261 | chr20_38155620_- | SINE | Alu | AluJr |
CAediting_1427262 | chr20_38155621_- | SINE | Alu | AluJr |
CAediting_1427263 | chr20_38160846_- | SINE | Alu | AluSp |
Top |
RNA A-to-I editing events in the alternative splicing sites for TGM2 |
![]() |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_1427201 | chr20_38129483_- | 38129475:38129497 | 3SS | 0+6i | GCCTCGTGGTTATTAGCAAGGCT | -5.59 | GCCTCGTGGTTATTGGCAAGGCT | -1.23 |
IR | CAediting_1427202 | chr20_38129486_- | 38129475:38129497 | 3SS | 0+9i | GCCTCGTGGTTATTAGCAAGGCT | -5.59 | GCCTCGTGGTTGTTAGCAAGGCT | -4.07 |
![]() |
![]() |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for TGM2 |
![]() * The grey color means N/A. |
![]() |
![]() * Click on the image to enlarge it in a new window. |
Top |
Protein coding region RNA A-to-I editings for TGM2 |
![]() * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for TGM2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
Top |
The effects of the RNA editing to the stability of the RNA structures for TGM2 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
![]() |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for TGM2 |
![]() |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
Top |
Relation with cancer stages for TGM2 |
![]() |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
Top |
Relation with survival for TGM2 |
![]() |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
Top |
RelatedDrugs for TGM2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
TGM2 | P21980 | DB11254 | Hexylresorcinol | Protein-glutamine gamma-glutamyltransferase 2 | SmallMoleculeDrug | approved |
Top |
RelatedDiseases for TGM2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
TGM2 | C0005586 | Bipolar Disorder | 2 | PSYGENET |
TGM2 | C0017636 | Glioblastoma | 2 | CTD_human |
TGM2 | C0036341 | Schizophrenia | 2 | PSYGENET |
TGM2 | C0334588 | Giant Cell Glioblastoma | 2 | CTD_human |
TGM2 | C1621958 | Glioblastoma Multiforme | 2 | CTD_human |
TGM2 | C0006118 | Brain Neoplasms | 1 | CTD_human |
TGM2 | C0006142 | Malignant neoplasm of breast | 1 | CTD_human |
TGM2 | C0007134 | Renal Cell Carcinoma | 1 | CTD_human |
TGM2 | C0007570 | Celiac Disease | 1 | CTD_human |
TGM2 | C0014859 | Esophageal Neoplasms | 1 | CTD_human |
TGM2 | C0020538 | Hypertensive disease | 1 | CTD_human |
TGM2 | C0029408 | Degenerative polyarthritis | 1 | CTD_human |
TGM2 | C0030297 | Pancreatic Neoplasm | 1 | CTD_human |
TGM2 | C0086743 | Osteoarthrosis Deformans | 1 | CTD_human |
TGM2 | C0153633 | Malignant neoplasm of brain | 1 | CTD_human |
TGM2 | C0279702 | Conventional (Clear Cell) Renal Cell Carcinoma | 1 | CTD_human |
TGM2 | C0346647 | Malignant neoplasm of pancreas | 1 | CTD_human |
TGM2 | C0496899 | Benign neoplasm of brain, unspecified | 1 | CTD_human |
TGM2 | C0546837 | Malignant neoplasm of esophagus | 1 | CTD_human |
TGM2 | C0678222 | Breast Carcinoma | 1 | CTD_human |
TGM2 | C0750974 | Brain Tumor, Primary | 1 | CTD_human |
TGM2 | C0750977 | Recurrent Brain Neoplasm | 1 | CTD_human |
TGM2 | C0750979 | Primary malignant neoplasm of brain | 1 | CTD_human |
TGM2 | C1257931 | Mammary Neoplasms, Human | 1 | CTD_human |
TGM2 | C1266042 | Chromophobe Renal Cell Carcinoma | 1 | CTD_human |
TGM2 | C1266043 | Sarcomatoid Renal Cell Carcinoma | 1 | CTD_human |
TGM2 | C1266044 | Collecting Duct Carcinoma of the Kidney | 1 | CTD_human |
TGM2 | C1306837 | Papillary Renal Cell Carcinoma | 1 | CTD_human |
TGM2 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
TGM2 | C1527390 | Neoplasms, Intracranial | 1 | CTD_human |
TGM2 | C4704874 | Mammary Carcinoma, Human | 1 | CTD_human |