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Editing gene: TCTA (CAeditome ID:6988)

Gene summary for TCTA

Gene summary

Gene information	Gene symbol	TCTA
	Gene ID	6988
	Gene name	T cell leukemia translocation altered
	Synonyms	-
	Cytomap	3p21.31
	Type of gene	protein-coding
	Description	T-cell leukemia translocation-altered gene proteinT-cell leukemia translocation-associated gene protein
	Modification date	20210518
	UniProtAcc	P57738
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
TCTA	GO:0045671	T-cell leukemia translocation-altered gene protein	19560569
TCTA	GO:0072675	T-cell leukemia translocation-altered gene protein	19560569

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RNA A-to-I events for TCTA

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000145022.4

RNA A-to-I editing events in Cancer.

CAediting_279885(49414058, +), CAediting_279886(49414075, +), CAediting_279887(49414078, +), CAediting_279888(49414080, +), CAediting_279889(49414112, +), CAediting_279890(49414543, +), CAediting_279891(49415239, +), CAediting_279892(49415243, +), CAediting_279893(49415253, +), CAediting_279894(49415261, +), CAediting_279895(49415262, +), CAediting_279896(49415267, +), CAediting_279897(49415288, +), CAediting_279898(49415300, +), CAediting_279899(49415305, +), CAediting_279900(49415314, +), CAediting_279901(49415316, +), CAediting_279902(49415325, +), CAediting_279903(49415329, +), CAediting_279904(49415345, +), CAediting_279905(49415351, +), CAediting_279906(49415355, +), CAediting_279907(49415356, +), CAediting_279908(49415357, +), CAediting_279909(49415358, +), CAediting_279910(49415360, +), CAediting_279911(49415362, +), CAediting_279912(49415364, +), CAediting_279913(49415365, +), CAediting_279914(49415366, +), CAediting_279915(49415369, +), CAediting_279916(49415385, +), CAediting_279917(49415392, +), CAediting_279918(49415395, +), CAediting_279919(49415396, +), CAediting_279920(49415401, +), CAediting_279921(49415409, +), CAediting_279922(49415419, +), CAediting_279923(49415422, +), CAediting_279924(49415425, +), CAediting_279925(49415437, +), CAediting_279926(49415444, +), CAediting_279927(49415448, +), CAediting_279928(49415457, +), CAediting_279929(49415466, +), CAediting_279930(49415468, +), CAediting_279931(49415486, +), CAediting_279932(49415495, +), CAediting_279933(49415503, +),

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RNA editing positional annotations for TCTA using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_279885	chr3_49414058_+	ncRNA_intronic
CAediting_279886	chr3_49414075_+	ncRNA_intronic
CAediting_279887	chr3_49414078_+	ncRNA_intronic
CAediting_279888	chr3_49414080_+	ncRNA_intronic
CAediting_279889	chr3_49414112_+	ncRNA_intronic
CAediting_279890	chr3_49414543_+	ncRNA_intronic
CAediting_279891	chr3_49415239_+	ncRNA_exonic
CAediting_279892	chr3_49415243_+	ncRNA_exonic
CAediting_279893	chr3_49415253_+	ncRNA_exonic
CAediting_279894	chr3_49415261_+	ncRNA_exonic
CAediting_279895	chr3_49415262_+	ncRNA_exonic
CAediting_279896	chr3_49415267_+	ncRNA_exonic
CAediting_279897	chr3_49415288_+	ncRNA_exonic
CAediting_279898	chr3_49415300_+	ncRNA_exonic
CAediting_279899	chr3_49415305_+	ncRNA_exonic
CAediting_279900	chr3_49415314_+	ncRNA_exonic
CAediting_279901	chr3_49415316_+	ncRNA_exonic
CAediting_279902	chr3_49415325_+	ncRNA_exonic
CAediting_279903	chr3_49415329_+	ncRNA_exonic
CAediting_279904	chr3_49415345_+	ncRNA_exonic
CAediting_279905	chr3_49415351_+	ncRNA_exonic
CAediting_279906	chr3_49415355_+	ncRNA_exonic
CAediting_279907	chr3_49415356_+	ncRNA_exonic
CAediting_279908	chr3_49415357_+	ncRNA_exonic
CAediting_279909	chr3_49415358_+	ncRNA_exonic
CAediting_279910	chr3_49415360_+	ncRNA_exonic
CAediting_279911	chr3_49415362_+	ncRNA_exonic
CAediting_279912	chr3_49415364_+	ncRNA_exonic
CAediting_279913	chr3_49415365_+	ncRNA_exonic
CAediting_279914	chr3_49415366_+	ncRNA_exonic
CAediting_279915	chr3_49415369_+	ncRNA_exonic
CAediting_279916	chr3_49415385_+	ncRNA_exonic
CAediting_279917	chr3_49415392_+	ncRNA_exonic
CAediting_279918	chr3_49415395_+	ncRNA_exonic
CAediting_279919	chr3_49415396_+	ncRNA_exonic
CAediting_279920	chr3_49415401_+	ncRNA_exonic
CAediting_279921	chr3_49415409_+	ncRNA_exonic
CAediting_279922	chr3_49415419_+	ncRNA_exonic
CAediting_279923	chr3_49415422_+	ncRNA_exonic
CAediting_279924	chr3_49415425_+	ncRNA_exonic
CAediting_279925	chr3_49415437_+	ncRNA_exonic
CAediting_279926	chr3_49415444_+	UTR3
CAediting_279927	chr3_49415448_+	UTR3
CAediting_279928	chr3_49415457_+	UTR3
CAediting_279929	chr3_49415466_+	UTR3
CAediting_279930	chr3_49415468_+	UTR3
CAediting_279931	chr3_49415486_+	UTR3
CAediting_279932	chr3_49415495_+	UTR3
CAediting_279933	chr3_49415503_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_279885	chr3_49414058_+	SINE	Alu	AluSz
CAediting_279886	chr3_49414075_+	SINE	Alu	AluSz
CAediting_279887	chr3_49414078_+	SINE	Alu	AluSz
CAediting_279888	chr3_49414080_+	SINE	Alu	AluSz
CAediting_279889	chr3_49414112_+	SINE	Alu	AluSz
CAediting_279890	chr3_49414543_+	SINE	Alu	AluSq2
CAediting_279891	chr3_49415239_+	SINE	Alu	AluSg
CAediting_279892	chr3_49415243_+	SINE	Alu	AluSg
CAediting_279893	chr3_49415253_+	SINE	Alu	AluSg
CAediting_279894	chr3_49415261_+	SINE	Alu	AluSg
CAediting_279895	chr3_49415262_+	SINE	Alu	AluSg
CAediting_279896	chr3_49415267_+	SINE	Alu	AluSg
CAediting_279897	chr3_49415288_+	SINE	Alu	AluSg
CAediting_279898	chr3_49415300_+	SINE	Alu	AluSg
CAediting_279899	chr3_49415305_+	SINE	Alu	AluSg
CAediting_279900	chr3_49415314_+	SINE	Alu	AluSg
CAediting_279901	chr3_49415316_+	SINE	Alu	AluSg
CAediting_279902	chr3_49415325_+	SINE	Alu	AluSg
CAediting_279903	chr3_49415329_+	SINE	Alu	AluSg
CAediting_279904	chr3_49415345_+	SINE	Alu	AluSg
CAediting_279905	chr3_49415351_+	SINE	Alu	AluSg
CAediting_279906	chr3_49415355_+	SINE	Alu	AluSg
CAediting_279907	chr3_49415356_+	SINE	Alu	AluSg
CAediting_279908	chr3_49415357_+	SINE	Alu	AluSg
CAediting_279909	chr3_49415358_+	SINE	Alu	AluSg
CAediting_279910	chr3_49415360_+	SINE	Alu	AluSg
CAediting_279911	chr3_49415362_+	SINE	Alu	AluSg
CAediting_279912	chr3_49415364_+	SINE	Alu	AluSg
CAediting_279913	chr3_49415365_+	SINE	Alu	AluSg
CAediting_279914	chr3_49415366_+	SINE	Alu	AluSg
CAediting_279915	chr3_49415369_+	SINE	Alu	AluSg
CAediting_279916	chr3_49415385_+	SINE	Alu	AluSg
CAediting_279917	chr3_49415392_+	SINE	Alu	AluSg
CAediting_279918	chr3_49415395_+	SINE	Alu	AluSg
CAediting_279919	chr3_49415396_+	SINE	Alu	AluSg
CAediting_279920	chr3_49415401_+	SINE	Alu	AluSg
CAediting_279921	chr3_49415409_+	SINE	Alu	AluSg
CAediting_279922	chr3_49415419_+	SINE	Alu	AluSg
CAediting_279923	chr3_49415422_+	SINE	Alu	AluSg
CAediting_279924	chr3_49415425_+	SINE	Alu	AluSg
CAediting_279925	chr3_49415437_+	SINE	Alu	AluSg
CAediting_279926	chr3_49415444_+	SINE	Alu	AluSg
CAediting_279927	chr3_49415448_+	SINE	Alu	AluSg
CAediting_279928	chr3_49415457_+	SINE	Alu	AluSg
CAediting_279929	chr3_49415466_+	SINE	Alu	AluSg
CAediting_279930	chr3_49415468_+	SINE	Alu	AluSg
CAediting_279931	chr3_49415486_+	SINE	Alu	AluSg
CAediting_279932	chr3_49415495_+	SINE	Alu	AluSg
CAediting_279933	chr3_49415503_+	SINE	Alu	AluSg

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RNA A-to-I editing events in the alternative splicing sites for TCTA

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000145022.4.TCTA.

Correlation between RNA A-to-I editing and PSI for ENSG00000145022.4.TCTA.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TCTA

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TCTA

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TCTA

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_279893	chr3_49415253_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4634	49415250	49415256	7mer-m8	49415239	49415257	150.00	-21.75
CAediting_279894	chr3_49415261_+	ENSG00000145022.4	ENST00000273590	hsa-miR-513a-5p	49415255	49415261	7mer-m8	49415245	49415262	144.00	-16.68
CAediting_279894	chr3_49415261_+	ENSG00000145022.4	ENST00000273590	hsa-miR-513a-5p	49415255	49415261	7mer-m8	49415245	49415262	144.00	-16.68
CAediting_279894	chr3_49415261_+	ENSG00000145022.4	ENST00000273590	hsa-miR-638	49415260	49415266	7mer-1a	49415242	49415266	159.00	-35.77
CAediting_279895	chr3_49415262_+	ENSG00000145022.4	ENST00000273590	hsa-miR-8052	49415260	49415266	7mer-1a	49415248	49415266	140.00	-24.15
CAediting_279905	chr3_49415351_+	ENSG00000145022.4	ENST00000273590	hsa-miR-374b-3p	49415348	49415355	8mer-1a	49415332	49415355	151.00	-11.83
CAediting_279905	chr3_49415351_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4756-3p	49415344	49415350	7mer-m8	49415331	49415351	152.00	-16.99
CAediting_279906	chr3_49415355_+	ENSG00000145022.4	ENST00000273590	hsa-miR-325	49415348	49415355	8mer-1a	49415333	49415355	145.00	-9.91
CAediting_279918	chr3_49415395_+	ENSG00000145022.4	ENST00000273590	hsa-miR-638	49415394	49415400	7mer-1a	49415376	49415400	155.00	-28.82
CAediting_279918	chr3_49415395_+	ENSG00000145022.4	ENST00000273590	hsa-miR-653-3p	49415389	49415395	7mer-m8	49415375	49415396	160.00	-17.33
CAediting_279929	chr3_49415466_+	ENSG00000145022.4	ENST00000273590	hsa-miR-149-5p	49415459	49415465	7mer-m8	49415444	49415466	152.00	-22.11
CAediting_279897	chr3_49415288_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4707-3p	49415284	49415291	8mer-1a	49415270	49415291	162.00	-27.57
CAediting_279902	chr3_49415325_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4435	49415321	49415328	8mer-1a	49415308	49415328	146.00	-18.85
CAediting_279902	chr3_49415325_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4435	49415321	49415328	8mer-1a	49415308	49415328	146.00	-18.85
CAediting_279902	chr3_49415325_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4755-3p	49415319	49415325	7mer-m8	49415305	49415326	145.00	-16.93
CAediting_279904	chr3_49415345_+	ENSG00000145022.4	ENST00000273590	hsa-miR-483-5p	49415341	49415347	7mer-m8	49415327	49415348	140.00	-14.01
CAediting_279907	chr3_49415356_+	ENSG00000145022.4	ENST00000273590	hsa-miR-630	49415354	49415361	8mer-1a	49415341	49415361	158.00	-15.14
CAediting_279910	chr3_49415360_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3680-3p	49415357	49415364	8mer-1a	49415342	49415364	140.00	-14.24
CAediting_279910	chr3_49415360_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3680-3p	49415357	49415364	8mer-1a	49415342	49415364	140.00	-14.24
CAediting_279912	chr3_49415364_+	ENSG00000145022.4	ENST00000273590	hsa-miR-578	49415359	49415365	7mer-m8	49415346	49415366	148.00	-9.14
CAediting_279912	chr3_49415364_+	ENSG00000145022.4	ENST00000273590	hsa-miR-643	49415357	49415364	8mer-1a	49415342	49415364	147.00	-12.10
CAediting_279913	chr3_49415365_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6844	49415359	49415365	7mer-m8	49415345	49415366	155.00	-7.49
CAediting_279916	chr3_49415385_+	ENSG00000145022.4	ENST00000273590	hsa-miR-210-3p	49415383	49415388	6mer	49415366	49415389	142.00	-21.54
CAediting_279922	chr3_49415419_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6747-3p	49415417	49415424	8mer-1a	49415402	49415424	149.00	-23.42
CAediting_279924	chr3_49415425_+	ENSG00000145022.4	ENST00000273590	hsa-miR-605-5p	49415423	49415429	7mer-m8	49415405	49415430	163.00	-23.05
CAediting_279924	chr3_49415425_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6801-3p	49415419	49415426	8mer-1a	49415404	49415426	146.00	-22.87
CAediting_279924	chr3_49415425_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6810-3p	49415419	49415426	8mer-1a	49415404	49415426	150.00	-25.00
CAediting_279925	chr3_49415437_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3155a	49415434	49415440	7mer-m8	49415420	49415441	144.00	-22.15
CAediting_279925	chr3_49415437_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3155b	49415434	49415440	7mer-m8	49415423	49415441	144.00	-20.99
CAediting_279925	chr3_49415437_+	ENSG00000145022.4	ENST00000273590	hsa-miR-484	49415434	49415440	7mer-m8	49415420	49415441	151.00	-23.14
CAediting_279927	chr3_49415448_+	ENSG00000145022.4	ENST00000273590	hsa-miR-1281	49415441	49415447	7mer-m8	49415432	49415448	141.00	-17.01
CAediting_279928	chr3_49415457_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6511a-3p	49415456	49415461	6mer	49415441	49415462	144.00	-26.09
CAediting_279928	chr3_49415457_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6511a-3p	49415456	49415461	6mer	49415441	49415462	144.00	-26.09
CAediting_279928	chr3_49415457_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6511a-3p	49415456	49415461	6mer	49415441	49415462	144.00	-26.09
CAediting_279928	chr3_49415457_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6511a-3p	49415456	49415461	6mer	49415441	49415462	144.00	-26.09
CAediting_279928	chr3_49415457_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6511b-3p	49415456	49415461	6mer	49415440	49415462	148.00	-28.97
CAediting_279928	chr3_49415457_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6511b-3p	49415456	49415461	6mer	49415440	49415462	148.00	-28.97
CAediting_279928	chr3_49415457_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6784-3p	49415456	49415461	6mer	49415440	49415462	151.00	-31.20
CAediting_279930	chr3_49415468_+	ENSG00000145022.4	ENST00000273590	hsa-miR-212-5p	49415461	49415467	7mer-m8	49415449	49415468	158.00	-26.27
CAediting_279930	chr3_49415468_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6813-3p	49415462	49415468	7mer-m8	49415448	49415469	150.00	-19.33
CAediting_279931	chr3_49415486_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4743-5p	49415482	49415488	7mer-m8	49415467	49415489	148.00	-24.79
CAediting_279900	chr3_49415314_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4281	49415311	49415318	8mer-1a	49415301	49415318	142.00	-19.48
CAediting_279900	chr3_49415314_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6716-3p	49415307	49415313	7mer-m8	49415295	49415314	152.00	-23.99
CAediting_279901	chr3_49415316_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3176	49415313	49415319	7mer-m8	49415302	49415320	160.00	-25.38
CAediting_279901	chr3_49415316_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6878-3p	49415312	49415318	7mer-m8	49415297	49415319	150.00	-24.06
CAediting_279926	chr3_49415444_+	ENSG00000145022.4	ENST00000273590	hsa-miR-1913	49415442	49415449	8mer-1a	49415428	49415449	148.00	-21.45
CAediting_279926	chr3_49415444_+	ENSG00000145022.4	ENST00000273590	hsa-miR-361-3p	49415438	49415444	7mer-m8	49415424	49415445	155.00	-23.38

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_279894	chr3_49415261_+	ENSG00000145022.4	ENST00000273590	hsa-miR-10399-5p	49415256	49415262	7mer-m8	49415242	49415263	144	-10.39
CAediting_279895	chr3_49415262_+	ENSG00000145022.4	ENST00000273590	hsa-miR-10399-5p	49415256	49415262	7mer-m8	49415242	49415263	144	-10.39
CAediting_279921	chr3_49415409_+	ENSG00000145022.4	ENST00000273590	hsa-miR-1200	49415405	49415411	7mer-m8	49415391	49415412	141	-17.86
CAediting_279917	chr3_49415392_+	ENSG00000145022.4	ENST00000273590	hsa-miR-12132	49415390	49415396	7mer-m8	49415375	49415397	147	-10.18
CAediting_279918	chr3_49415395_+	ENSG00000145022.4	ENST00000273590	hsa-miR-12132	49415390	49415396	7mer-m8	49415375	49415397	147	-10.18
CAediting_279919	chr3_49415396_+	ENSG00000145022.4	ENST00000273590	hsa-miR-12132	49415390	49415396	7mer-m8	49415375	49415397	147	-10.18
CAediting_279916	chr3_49415385_+	ENSG00000145022.4	ENST00000273590	hsa-miR-1227-3p	49415379	49415386	8mer-1a	49415367	49415386	147	-19.96
CAediting_279931	chr3_49415486_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3135b	49415481	49415487	7mer-m8	49415463	49415488	152	-30.49
CAediting_279904	chr3_49415345_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3170	49415338	49415344	7mer-m8	49415324	49415345	144	-13.7
CAediting_279891	chr3_49415239_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3190-5p	49415233	49415239	7mer-m8	49415221	49415240	151	-20.82
CAediting_279931	chr3_49415486_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3652	49415482	49415488	7mer-m8	49415473	49415489	149	-17.94
CAediting_279901	chr3_49415316_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3663-5p	49415313	49415319	7mer-m8	49415301	49415320	148	-21.98
CAediting_279932	chr3_49415495_+	ENSG00000145022.4	ENST00000273590	hsa-miR-367-5p	49415492	49415499	8mer-1a	49415478	49415499	143	-12.17
CAediting_279899	chr3_49415305_+	ENSG00000145022.4	ENST00000273590	hsa-miR-378a-5p	49415301	49415307	7mer-m8	49415287	49415308	153	-23.97
CAediting_279922	chr3_49415419_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3977	49415415	49415421	7mer-m8	49415397	49415422	146	-10.11
CAediting_279923	chr3_49415422_+	ENSG00000145022.4	ENST00000273590	hsa-miR-3977	49415415	49415421	7mer-m8	49415397	49415422	146	-10.11
CAediting_279933	chr3_49415503_+	ENSG00000145022.4	ENST00000273590	hsa-miR-431-5p	49415500	49415506	7mer-m8	49415487	49415507	140	-12.89
CAediting_279931	chr3_49415486_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4505	49415483	49415488	6mer	49415472	49415489	140	-26.64
CAediting_279916	chr3_49415385_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4715-3p	49415378	49415384	7mer-m8	49415363	49415385	151	-20.6
CAediting_279903	chr3_49415329_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4716-5p	49415327	49415333	7mer-m8	49415313	49415334	140	-9.16
CAediting_279913	chr3_49415365_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4735-5p	49415363	49415369	7mer-m8	49415349	49415370	140	-5.48
CAediting_279914	chr3_49415366_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4735-5p	49415363	49415369	7mer-m8	49415349	49415370	140	-5.48
CAediting_279915	chr3_49415369_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4735-5p	49415363	49415369	7mer-m8	49415349	49415370	140	-5.48
CAediting_279903	chr3_49415329_+	ENSG00000145022.4	ENST00000273590	hsa-miR-4781-3p	49415325	49415331	7mer-m8	49415309	49415332	142	-13.55
CAediting_279925	chr3_49415437_+	ENSG00000145022.4	ENST00000273590	hsa-miR-498-5p	49415430	49415436	7mer-m8	49415414	49415437	144	-13.58
CAediting_279895	chr3_49415262_+	ENSG00000145022.4	ENST00000273590	hsa-miR-5089-5p	49415260	49415267	8mer-1a	49415245	49415267	148	-14.7
CAediting_279896	chr3_49415267_+	ENSG00000145022.4	ENST00000273590	hsa-miR-5089-5p	49415260	49415267	8mer-1a	49415245	49415267	148	-14.7
CAediting_279919	chr3_49415396_+	ENSG00000145022.4	ENST00000273590	hsa-miR-5089-5p	49415394	49415400	7mer-m8	49415382	49415401	153	-15.68
CAediting_279920	chr3_49415401_+	ENSG00000145022.4	ENST00000273590	hsa-miR-5089-5p	49415394	49415400	7mer-m8	49415382	49415401	153	-15.68
CAediting_279891	chr3_49415239_+	ENSG00000145022.4	ENST00000273590	hsa-miR-548s	49415232	49415238	7mer-m8	49415217	49415239	153	-14.58
CAediting_279933	chr3_49415503_+	ENSG00000145022.4	ENST00000273590	hsa-miR-5691	49415496	49415503	8mer-1a	49415481	49415503	146	-19.21
CAediting_279901	chr3_49415316_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6131	49415314	49415320	7mer-m8	49415303	49415321	140	-18.33
CAediting_279894	chr3_49415261_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6504-3p	49415256	49415262	7mer-m8	49415242	49415263	148	-14.48
CAediting_279895	chr3_49415262_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6504-3p	49415256	49415262	7mer-m8	49415242	49415263	148	-14.48
CAediting_279920	chr3_49415401_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6506-5p	49415395	49415401	7mer-m8	49415382	49415402	147	-17.09
CAediting_279896	chr3_49415267_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6513-5p	49415261	49415267	7mer-m8	49415245	49415268	149	-17.38
CAediting_279897	chr3_49415288_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6747-3p	49415283	49415289	7mer-m8	49415269	49415290	150	-22.22
CAediting_279926	chr3_49415444_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6778-3p	49415440	49415447	8mer-1a	49415429	49415447	143	-17.83
CAediting_279898	chr3_49415300_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6790-3p	49415297	49415304	8mer-1a	49415279	49415304	144	-22.32
CAediting_279926	chr3_49415444_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6791-3p	49415441	49415447	7mer-1a	49415428	49415447	145	-25.99
CAediting_279893	chr3_49415253_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6807-5p	49415246	49415252	7mer-m8	49415231	49415253	144	-20.6
CAediting_279905	chr3_49415351_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6832-5p	49415345	49415351	7mer-m8	49415330	49415352	142	-15.43
CAediting_279926	chr3_49415444_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6836-3p	49415441	49415447	7mer-m8	49415428	49415448	147	-21.53
CAediting_279927	chr3_49415448_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6836-3p	49415441	49415447	7mer-m8	49415428	49415448	147	-21.53
CAediting_279900	chr3_49415314_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6843-3p	49415312	49415318	7mer-m8	49415300	49415319	152	-19.47
CAediting_279901	chr3_49415316_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6843-3p	49415312	49415318	7mer-m8	49415300	49415319	152	-19.47
CAediting_279900	chr3_49415314_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6848-3p	49415312	49415318	7mer-m8	49415302	49415319	142	-14.3
CAediting_279901	chr3_49415316_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6848-3p	49415312	49415318	7mer-m8	49415302	49415319	142	-14.3
CAediting_279904	chr3_49415345_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6855-5p	49415338	49415344	7mer-m8	49415321	49415345	145	-17.88
CAediting_279916	chr3_49415385_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6867-5p	49415383	49415389	7mer-m8	49415368	49415390	141	-14.33
CAediting_279921	chr3_49415409_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6869-5p	49415402	49415408	7mer-m8	49415387	49415409	146	-17.48
CAediting_279892	chr3_49415243_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6872-3p	49415239	49415245	7mer-m8	49415225	49415246	150	-20.46
CAediting_279904	chr3_49415345_+	ENSG00000145022.4	ENST00000273590	hsa-miR-6890-5p	49415339	49415345	7mer-m8	49415326	49415346	140	-12.38
CAediting_279894	chr3_49415261_+	ENSG00000145022.4	ENST00000273590	hsa-miR-7151-3p	49415254	49415261	8mer-1a	49415241	49415261	144	-16.51
CAediting_279932	chr3_49415495_+	ENSG00000145022.4	ENST00000273590	hsa-miR-744-3p	49415491	49415497	7mer-m8	49415477	49415498	140	-14.79
CAediting_279917	chr3_49415392_+	ENSG00000145022.4	ENST00000273590	hsa-miR-7978	49415386	49415392	7mer-m8	49415373	49415393	150	-16.61

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000145022.4	ENST00000273590	hsa-miR-320e	49415554	49415560	7mer-m8	49415545	49415561	143	-15.19
CAediting_442554	chr5_154685830_+	ENSG00000145022.4	ENST00000273590	hsa-miR-1303	49414879	49414885	7mer-m8	49414865	49414886	152	-19.39

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1054808	chr15_66496985_-	ENSG00000145022.4	ENST00000273590	hsa-miR-4512	49416336	49416341	6mer	49416323	49416342	140	-26.61
CAediting_1054808	chr15_66496985_-	ENSG00000145022.4	ENST00000273590	hsa-miR-4512	49415592	49415598	7mer-m8	49415578	49415599	140	-16.92
CAediting_1229413	chr17_67471544_+	ENSG00000145022.4	ENST00000273590	hsa-miR-548aa	49415615	49415621	7mer-m8	49415597	49415622	148	-6.55
CAediting_1229414	chr17_67471546_+	ENSG00000145022.4	ENST00000273590	hsa-miR-548aa	49415615	49415621	7mer-m8	49415597	49415622	148	-6.55
CAediting_1229415	chr17_67471547_+	ENSG00000145022.4	ENST00000273590	hsa-miR-548aa	49415615	49415621	7mer-m8	49415597	49415622	148	-6.55
CAediting_1399425	chr20_1392958_-	ENSG00000145022.4	ENST00000273590	hsa-miR-6869-5p	49415402	49415408	7mer-m8	49415387	49415409	146	-17.48
CAediting_1399425	chr20_1392958_-	ENSG00000145022.4	ENST00000273590	hsa-miR-6869-5p	49415822	49415828	7mer-m8	49415809	49415829	150	-25.35
CAediting_468389	chr6_31355314_-	ENSG00000145022.4	ENST00000273590	hsa-miR-6891-5p	49416198	49416204	7mer-m8	49416186	49416205	152	-24.41

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for TCTA

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000273590.3	protein_coding
ENST00000487432.1	processed_transcript
ENST00000493381.1	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_279891	ENST00000273590.3	chr3_49415239_+	-827.20	-825.20	-868.90
CAediting_279892	ENST00000273590.3	chr3_49415243_+	-825.60	-825.20	-868.90
CAediting_279893	ENST00000273590.3	chr3_49415253_+	-827.30	-825.20	-868.90
CAediting_279894	ENST00000273590.3	chr3_49415261_+	-824.90	-825.20	-868.90
CAediting_279895	ENST00000273590.3	chr3_49415262_+	-825.20	-825.20	-868.90
CAediting_279896	ENST00000273590.3	chr3_49415267_+	-824.90	-825.20	-868.90
CAediting_279897	ENST00000273590.3	chr3_49415288_+	-824.50	-825.20	-868.90
CAediting_279898	ENST00000273590.3	chr3_49415300_+	-830.10	-825.20	-868.90
CAediting_279899	ENST00000273590.3	chr3_49415305_+	-824.50	-825.20	-868.90
CAediting_279900	ENST00000273590.3	chr3_49415314_+	-825.20	-825.20	-868.90
CAediting_279901	ENST00000273590.3	chr3_49415316_+	-824.60	-825.20	-868.90
CAediting_279902	ENST00000273590.3	chr3_49415325_+	-828.50	-825.20	-868.90
CAediting_279903	ENST00000273590.3	chr3_49415329_+	-825.20	-825.20	-868.90
CAediting_279904	ENST00000273590.3	chr3_49415345_+	-824.50	-825.20	-868.90
CAediting_279905	ENST00000273590.3	chr3_49415351_+	-827.10	-825.20	-868.90
CAediting_279906	ENST00000273590.3	chr3_49415355_+	-825.20	-825.20	-868.90
CAediting_279907	ENST00000273590.3	chr3_49415356_+	-826.00	-825.20	-868.90
CAediting_279908	ENST00000273590.3	chr3_49415357_+	-825.70	-825.20	-868.90
CAediting_279909	ENST00000273590.3	chr3_49415358_+	-826.00	-825.20	-868.90
CAediting_279910	ENST00000273590.3	chr3_49415360_+	-825.20	-825.20	-868.90
CAediting_279911	ENST00000273590.3	chr3_49415362_+	-825.20	-825.20	-868.90
CAediting_279912	ENST00000273590.3	chr3_49415364_+	-825.20	-825.20	-868.90
CAediting_279913	ENST00000273590.3	chr3_49415365_+	-825.20	-825.20	-868.90
CAediting_279914	ENST00000273590.3	chr3_49415366_+	-825.20	-825.20	-868.90
CAediting_279915	ENST00000273590.3	chr3_49415369_+	-824.90	-825.20	-868.90
CAediting_279916	ENST00000273590.3	chr3_49415385_+	-825.20	-825.20	-868.90
CAediting_279917	ENST00000273590.3	chr3_49415392_+	-827.60	-825.20	-868.90
CAediting_279918	ENST00000273590.3	chr3_49415395_+	-825.20	-825.20	-868.90
CAediting_279919	ENST00000273590.3	chr3_49415396_+	-825.20	-825.20	-868.90
CAediting_279920	ENST00000273590.3	chr3_49415401_+	-831.40	-825.20	-868.90
CAediting_279921	ENST00000273590.3	chr3_49415409_+	-824.50	-825.20	-868.90
CAediting_279922	ENST00000273590.3	chr3_49415419_+	-824.90	-825.20	-868.90
CAediting_279923	ENST00000273590.3	chr3_49415422_+	-824.40	-825.20	-868.90
CAediting_279924	ENST00000273590.3	chr3_49415425_+	-825.20	-825.20	-868.90
CAediting_279925	ENST00000273590.3	chr3_49415437_+	-831.90	-825.20	-868.90
CAediting_279926	ENST00000273590.3	chr3_49415444_+	-825.50	-825.20	-868.90
CAediting_279927	ENST00000273590.3	chr3_49415448_+	-824.40	-825.20	-868.90
CAediting_279928	ENST00000273590.3	chr3_49415457_+	-824.40	-825.20	-868.90
CAediting_279929	ENST00000273590.3	chr3_49415466_+	-825.20	-825.20	-868.90
CAediting_279930	ENST00000273590.3	chr3_49415468_+	-822.50	-825.20	-868.90
CAediting_279931	ENST00000273590.3	chr3_49415486_+	-825.30	-825.20	-868.90
CAediting_279932	ENST00000273590.3	chr3_49415495_+	-825.20	-825.20	-868.90
CAediting_279933	ENST00000273590.3	chr3_49415503_+	-825.10	-825.20	-868.90
CAediting_279891	ENST00000487432.1	chr3_49415239_+	-376.10	-374.90	-384.30
CAediting_279892	ENST00000487432.1	chr3_49415243_+	-376.90	-374.90	-384.30
CAediting_279893	ENST00000487432.1	chr3_49415253_+	-374.80	-374.90	-384.30
CAediting_279894	ENST00000487432.1	chr3_49415261_+	-376.70	-374.90	-384.30
CAediting_279895	ENST00000487432.1	chr3_49415262_+	-379.50	-374.90	-384.30
CAediting_279891	ENST00000493381.1	chr3_49415239_+	-441.80	-441.60	-484.30
CAediting_279892	ENST00000493381.1	chr3_49415243_+	-445.40	-441.60	-484.30
CAediting_279893	ENST00000493381.1	chr3_49415253_+	-441.80	-441.60	-484.30
CAediting_279894	ENST00000493381.1	chr3_49415261_+	-441.80	-441.60	-484.30
CAediting_279895	ENST00000493381.1	chr3_49415262_+	-441.60	-441.60	-484.30
CAediting_279896	ENST00000493381.1	chr3_49415267_+	-441.30	-441.60	-484.30
CAediting_279897	ENST00000493381.1	chr3_49415288_+	-443.40	-441.60	-484.30
CAediting_279898	ENST00000493381.1	chr3_49415300_+	-441.50	-441.60	-484.30
CAediting_279899	ENST00000493381.1	chr3_49415305_+	-441.50	-441.60	-484.30
CAediting_279900	ENST00000493381.1	chr3_49415314_+	-441.60	-441.60	-484.30
CAediting_279901	ENST00000493381.1	chr3_49415316_+	-441.90	-441.60	-484.30
CAediting_279902	ENST00000493381.1	chr3_49415325_+	-448.80	-441.60	-484.30
CAediting_279903	ENST00000493381.1	chr3_49415329_+	-441.60	-441.60	-484.30
CAediting_279904	ENST00000493381.1	chr3_49415345_+	-442.60	-441.60	-484.30
CAediting_279905	ENST00000493381.1	chr3_49415351_+	-443.30	-441.60	-484.30
CAediting_279906	ENST00000493381.1	chr3_49415355_+	-441.60	-441.60	-484.30
CAediting_279907	ENST00000493381.1	chr3_49415356_+	-442.40	-441.60	-484.30
CAediting_279908	ENST00000493381.1	chr3_49415357_+	-442.60	-441.60	-484.30
CAediting_279909	ENST00000493381.1	chr3_49415358_+	-442.40	-441.60	-484.30
CAediting_279910	ENST00000493381.1	chr3_49415360_+	-441.60	-441.60	-484.30
CAediting_279911	ENST00000493381.1	chr3_49415362_+	-441.60	-441.60	-484.30
CAediting_279912	ENST00000493381.1	chr3_49415364_+	-441.60	-441.60	-484.30
CAediting_279913	ENST00000493381.1	chr3_49415365_+	-441.60	-441.60	-484.30
CAediting_279914	ENST00000493381.1	chr3_49415366_+	-441.60	-441.60	-484.30
CAediting_279915	ENST00000493381.1	chr3_49415369_+	-441.30	-441.60	-484.30
CAediting_279916	ENST00000493381.1	chr3_49415385_+	-441.60	-441.60	-484.30
CAediting_279917	ENST00000493381.1	chr3_49415392_+	-443.10	-441.60	-484.30
CAediting_279918	ENST00000493381.1	chr3_49415395_+	-441.60	-441.60	-484.30
CAediting_279919	ENST00000493381.1	chr3_49415396_+	-441.90	-441.60	-484.30
CAediting_279920	ENST00000493381.1	chr3_49415401_+	-447.80	-441.60	-484.30
CAediting_279921	ENST00000493381.1	chr3_49415409_+	-443.20	-441.60	-484.30
CAediting_279922	ENST00000493381.1	chr3_49415419_+	-443.90	-441.60	-484.30
CAediting_279923	ENST00000493381.1	chr3_49415422_+	-443.20	-441.60	-484.30
CAediting_279924	ENST00000493381.1	chr3_49415425_+	-442.40	-441.60	-484.30
CAediting_279925	ENST00000493381.1	chr3_49415437_+	-446.70	-441.60	-484.30

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Relation with ADAR for TCTA

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for TCTA

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for TCTA

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TCTA

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TCTA

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene