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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TCF3 (CAeditome ID:6929) |
Gene summary for TCF3 |
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Gene information | Gene symbol | TCF3 | Gene ID | 6929 |
Gene name | transcription factor 3 | |
Synonyms | AGM8|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75 | |
Cytomap | 19p13.3 | |
Type of gene | protein-coding | |
Description | transcription factor E2-alphaE2A-HLF fusion transcript proteinNOL1-TCF3 fusionVDR interacting repressorclass B basic helix-loop-helix protein 21helix-loop-helix protein HE47immunoglobulin transcription factor 1kappa-E2-binding factornegative vitam | |
Modification date | 20210518 | |
UniProtAcc | P15923 | |
Context | - 33676040(TCF3-activated FAM201A enhances cell proliferation and invasion via miR-186-5p/TNKS1BP1 axis in triple-negative breast cancer) |
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Gene | GO ID | GO term | PubMed ID |
TCF3 | GO:0033152 | Transcription factor E2-alpha | 16428437 |
TCF3 | GO:0045944 | Transcription factor E2-alpha | 16428437 |
TCF3 | GO:0070888 | Transcription factor E2-alpha | 10775504 |
TCF3 | GO:0000978 | Transcription factor E2-alpha | 14576336 |
TCF3 | GO:0001227 | Transcription factor E2-alpha | 14576336 |
TCF3 | GO:0001228 | Transcription factor E2-alpha | 10652346 |
TCF3 | GO:0001228 | Transcription factor E2-alpha | 10775504 |
TCF3 | GO:0001228 | Transcription factor E2-alpha | 14752053 |
TCF3 | GO:0003677 | Transcription factor E2-alpha | 10958665 |
TCF3 | GO:0003700 | Transcription factor E2-alpha | 2105528 |
TCF3 | GO:0042803 | Transcription factor E2-alpha | 10652346 |
TCF3 | GO:0042803 | Transcription factor E2-alpha | 10958665 |
TCF3 | GO:0042803 | Transcription factor E2-alpha | 14752053 |
TCF3 | GO:0046982 | Transcription factor E2-alpha | 14752053 |
TCF3 | GO:0070644 | Transcription factor E2-alpha | 17426122 |
TCF3 | GO:0070888 | Transcription factor E2-alpha | 10652346 |
TCF3 | GO:0070888 | Transcription factor E2-alpha | 7933101 |
TCF3 | GO:0000122 | Transcription factor E2-alpha | 14576336 |
TCF3 | GO:0045893 | Transcription factor E2-alpha | 2105528 |
TCF3 | GO:0045944 | Transcription factor E2-alpha | 10652346 |
TCF3 | GO:0045944 | Transcription factor E2-alpha | 10775504 |
TCF3 | GO:0045944 | Transcription factor E2-alpha | 19362560 |
TCF3 | GO:0051091 | Transcription factor E2-alpha | 14752053 |
TCF3 | GO:0000785 | Transcription factor E2-alpha | 21828274 |
TCF3 | GO:0000791 | Transcription factor E2-alpha | 10652346 |
TCF3 | GO:0005634 | Transcription factor E2-alpha | 10775504 |
TCF3 | GO:0005634 | Transcription factor E2-alpha | 12493738 |
TCF3 | GO:0005634 | Transcription factor E2-alpha | 21828274 |
TCF3 | GO:0005654 | Transcription factor E2-alpha | 0000052 |
TCF3 | GO:0005737 | Transcription factor E2-alpha | 21828274 |
TCF3 | GO:0005667 | Transcription factor E2-alpha | 10775504 |
TCF3 | GO:0090575 | Transcription factor E2-alpha | 10545951 |
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RNA A-to-I events for TCF3 |
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CAediting_1271917(1612293, -), CAediting_1271918(1614331, -), CAediting_1271919(1615371, -), CAediting_1271920(1624352, -), CAediting_1271921(1636220, -), CAediting_1271922(1636407, -), CAediting_1271923(1637653, -), CAediting_1271924(1637907, -), CAediting_1271925(1638447, -), CAediting_1271926(1639195, -), CAediting_1271927(1639204, -), CAediting_1271928(1639208, -), CAediting_1271929(1639237, -), CAediting_1271930(1639239, -), CAediting_1271931(1639245, -), CAediting_1271932(1639247, -), CAediting_1271933(1640346, -), CAediting_1271934(1640354, -), CAediting_1271935(1640371, -), CAediting_1271936(1640629, -), CAediting_1271937(1640752, -), CAediting_1271938(1641360, -), CAediting_1271939(1641425, -), CAediting_1271940(1641661, -), CAediting_1271941(1641708, -), CAediting_1271942(1641875, -), CAediting_1271943(1643627, -), CAediting_1271944(1643653, -), CAediting_1271945(1643660, -), |
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RNA editing positional annotations for TCF3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1271917 | chr19_1612293_- | nonsynonymous SNV | ENST00000344749.8 | c.A1574G | p.H525R | . | D | . |
CAediting_1271917 | chr19_1612293_- | nonsynonymous SNV | ENST00000453954.5 | c.A1811G | p.H604R | . | D | . |
CAediting_1271917 | chr19_1612293_- | nonsynonymous SNV | ENST00000585731.4 | c.A251G | p.H84R | . | D | . |
CAediting_1271917 | chr19_1612293_- | nonsynonymous SNV | ENST00000588136.4 | c.A1727G | p.H576R | . | D | . |
CAediting_1271919 | chr19_1615371_- | nonsynonymous SNV | ENST00000262965.8 | c.A1736G | p.H579R | D | D | D |
CAediting_1271919 | chr19_1615371_- | nonsynonymous SNV | ENST00000395423.6 | c.A1748G | p.H583R | D | D | D |
CAediting_1271919 | chr19_1615371_- | nonsynonymous SNV | ENST00000587425.4 | c.A269G | p.H90R | D | D | D |
CAediting_1271919 | chr19_1615371_- | nonsynonymous SNV | ENST00000592628.4 | c.A311G | p.H104R | D | D | D |
CAediting_1271919 | chr19_1615371_- | nonsynonymous SNV | ENST00000611869.3 | c.A1736G | p.H579R | D | D | D |
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CAeditome ID | Position | Variant type |
CAediting_1271917 | chr19_1612293_- | exonic |
CAediting_1271918 | chr19_1614331_- | ncRNA_intronic |
CAediting_1271919 | chr19_1615371_- | exonic |
CAediting_1271920 | chr19_1624352_- | intronic |
CAediting_1271921 | chr19_1636220_- | intronic |
CAediting_1271922 | chr19_1636407_- | intronic |
CAediting_1271923 | chr19_1637653_- | intronic |
CAediting_1271924 | chr19_1637907_- | intronic |
CAediting_1271925 | chr19_1638447_- | intronic |
CAediting_1271926 | chr19_1639195_- | intronic |
CAediting_1271927 | chr19_1639204_- | intronic |
CAediting_1271928 | chr19_1639208_- | intronic |
CAediting_1271929 | chr19_1639237_- | intronic |
CAediting_1271930 | chr19_1639239_- | intronic |
CAediting_1271931 | chr19_1639245_- | intronic |
CAediting_1271932 | chr19_1639247_- | intronic |
CAediting_1271933 | chr19_1640346_- | intronic |
CAediting_1271934 | chr19_1640354_- | intronic |
CAediting_1271935 | chr19_1640371_- | intronic |
CAediting_1271936 | chr19_1640629_- | intronic |
CAediting_1271937 | chr19_1640752_- | intronic |
CAediting_1271938 | chr19_1641360_- | intronic |
CAediting_1271939 | chr19_1641425_- | intronic |
CAediting_1271940 | chr19_1641661_- | intronic |
CAediting_1271941 | chr19_1641708_- | intronic |
CAediting_1271942 | chr19_1641875_- | intronic |
CAediting_1271943 | chr19_1643627_- | intronic |
CAediting_1271944 | chr19_1643653_- | intronic |
CAediting_1271945 | chr19_1643660_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1271920 | chr19_1624352_- | SINE | Alu | AluSc |
CAediting_1271921 | chr19_1636220_- | SINE | Alu | AluSq |
CAediting_1271922 | chr19_1636407_- | SINE | Alu | AluSq |
CAediting_1271923 | chr19_1637653_- | SINE | Alu | AluY |
CAediting_1271924 | chr19_1637907_- | SINE | Alu | AluY |
CAediting_1271925 | chr19_1638447_- | SINE | Alu | AluY |
CAediting_1271926 | chr19_1639195_- | SINE | Alu | AluSx1 |
CAediting_1271927 | chr19_1639204_- | SINE | Alu | AluSx1 |
CAediting_1271928 | chr19_1639208_- | SINE | Alu | AluSx1 |
CAediting_1271929 | chr19_1639237_- | SINE | Alu | AluSx1 |
CAediting_1271930 | chr19_1639239_- | SINE | Alu | AluSx1 |
CAediting_1271931 | chr19_1639245_- | SINE | Alu | AluSx1 |
CAediting_1271932 | chr19_1639247_- | SINE | Alu | AluSx1 |
CAediting_1271933 | chr19_1640346_- | SINE | Alu | AluY |
CAediting_1271934 | chr19_1640354_- | SINE | Alu | AluY |
CAediting_1271935 | chr19_1640371_- | SINE | Alu | AluY |
CAediting_1271936 | chr19_1640629_- | SINE | Alu | AluY |
CAediting_1271937 | chr19_1640752_- | SINE | Alu | AluY |
CAediting_1271938 | chr19_1641360_- | SINE | Alu | AluJo |
CAediting_1271939 | chr19_1641425_- | SINE | Alu | AluJo |
CAediting_1271940 | chr19_1641661_- | SINE | Alu | AluSz6 |
CAediting_1271941 | chr19_1641708_- | SINE | Alu | AluSz6 |
CAediting_1271942 | chr19_1641875_- | SINE | Alu | FLAM_C |
CAediting_1271943 | chr19_1643627_- | SINE | Alu | FRAM |
CAediting_1271944 | chr19_1643653_- | SINE | Alu | FRAM |
CAediting_1271945 | chr19_1643660_- | SINE | Alu | FRAM |
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RNA A-to-I editing events in the alternative splicing sites for TCF3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TCF3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TCF3 |
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The effects of the RNA editing to the miRNA binding sites for TCF3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000592395 | hsa-miR-3197 | 1615366 | 1615373 | 8mer-1a | 1615366 | 1615387 | 151.00 | -26.49 |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000592395 | hsa-miR-6765-5p | 1615365 | 1615372 | 8mer-1a | 1615365 | 1615388 | 145.00 | -25.39 |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000585855 | hsa-miR-3197 | 1615366 | 1615373 | 8mer-1a | 1615366 | 1615387 | 151.00 | -26.49 |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000585855 | hsa-miR-6765-5p | 1615365 | 1615372 | 8mer-1a | 1615365 | 1615388 | 145.00 | -25.39 |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000586164 | hsa-miR-3197 | 1615366 | 1615373 | 8mer-1a | 1615366 | 1615387 | 151.00 | -26.49 |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000586164 | hsa-miR-6765-5p | 1615365 | 1615372 | 8mer-1a | 1615365 | 1615388 | 145.00 | -25.39 |
CAediting_1271917 | chr19_1612293_- | ENSG00000071564.13 | ENST00000592395 | hsa-miR-3197 | 1612288 | 1612295 | 8mer-1a | 1612288 | 1612309 | 151.00 | -25.87 |
CAediting_1271917 | chr19_1612293_- | ENSG00000071564.13 | ENST00000592395 | hsa-miR-6765-5p | 1612287 | 1612294 | 8mer-1a | 1612287 | 1612310 | 145.00 | -23.73 |
CAediting_1271917 | chr19_1612293_- | ENSG00000071564.13 | ENST00000585855 | hsa-miR-3197 | 1612288 | 1612295 | 8mer-1a | 1612288 | 1612309 | 151.00 | -25.87 |
CAediting_1271917 | chr19_1612293_- | ENSG00000071564.13 | ENST00000585855 | hsa-miR-6765-5p | 1612287 | 1612294 | 8mer-1a | 1612287 | 1612310 | 145.00 | -23.73 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000592395 | hsa-miR-143-5p | 1615370 | 1615376 | 7mer-m8 | 1615369 | 1615391 | 150 | -20.68 |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000585855 | hsa-miR-143-5p | 1615370 | 1615376 | 7mer-m8 | 1615369 | 1615391 | 150 | -20.68 |
CAediting_1271919 | chr19_1615371_- | ENSG00000071564.13 | ENST00000586164 | hsa-miR-143-5p | 1615370 | 1615376 | 7mer-m8 | 1615369 | 1615391 | 150 | -20.68 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000071564.13 | ENST00000344749 | hsa-miR-605-3p | 1610305 | 1610311 | 7mer-m8 | 1610304 | 1610325 | 147 | -14.15 |
CAediting_980496 | chr14_31014685_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-624-3p | 1610521 | 1610527 | 7mer-m8 | 1610520 | 1610540 | 143 | -13.65 |
CAediting_846604 | chr11_93733708_- | ENSG00000071564.13 | ENST00000592395 | hsa-miR-1304-3p | 1615357 | 1615364 | 8mer-1a | 1615357 | 1615378 | 147 | -16.52 |
CAediting_748296 | chr10_51299626_+ | ENSG00000071564.13 | ENST00000592628 | hsa-miR-605-3p | 1610305 | 1610311 | 7mer-m8 | 1610304 | 1610325 | 147 | -14.15 |
CAediting_748296 | chr10_51299626_+ | ENSG00000071564.13 | ENST00000593064 | hsa-miR-605-3p | 1610305 | 1610311 | 7mer-m8 | 1610304 | 1610325 | 147 | -14.15 |
CAediting_980496 | chr14_31014685_- | ENSG00000071564.13 | ENST00000593064 | hsa-miR-624-3p | 1610521 | 1610527 | 7mer-m8 | 1610520 | 1610540 | 143 | -13.65 |
CAediting_748296 | chr10_51299626_+ | ENSG00000071564.13 | ENST00000453954 | hsa-miR-605-3p | 1610305 | 1610311 | 7mer-m8 | 1610304 | 1610325 | 147 | -14.15 |
CAediting_846604 | chr11_93733708_- | ENSG00000071564.13 | ENST00000585855 | hsa-miR-1304-3p | 1615357 | 1615364 | 8mer-1a | 1615357 | 1615378 | 147 | -16.52 |
CAediting_846604 | chr11_93733708_- | ENSG00000071564.13 | ENST00000586164 | hsa-miR-1304-3p | 1615357 | 1615364 | 8mer-1a | 1615357 | 1615378 | 147 | -16.52 |
CAediting_1054808 | chr15_66496985_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-4512 | 1610646 | 1610652 | 7mer-m8 | 1610645 | 1610666 | 140 | -16.15 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000344749 | hsa-miR-548aa | 1610124 | 1610130 | 7mer-m8 | 1610123 | 1610147 | 147 | -11.96 |
CAediting_1368054 | chr19_46709310_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-320e | 1610102 | 1610108 | 7mer-m8 | 1610101 | 1610118 | 142 | -15.19 |
CAediting_1368054 | chr19_46709310_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-320e | 1609753 | 1609760 | 8mer-1a | 1609753 | 1609771 | 153 | -18.55 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-4635 | 1609762 | 1609768 | 7mer-m8 | 1609761 | 1609781 | 145 | -19.76 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-4635 | 1609451 | 1609458 | 8mer-1a | 1609451 | 1609474 | 158 | -22.81 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-589-3p | 1610480 | 1610487 | 8mer-1a | 1610480 | 1610504 | 164 | -30.16 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-589-3p | 1611658 | 1611664 | 7mer-m8 | 1611657 | 1611680 | 148 | -16.76 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000592395 | hsa-miR-4635 | 1612286 | 1612292 | 7mer-m8 | 1612285 | 1612306 | 146 | -19.03 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000592395 | hsa-miR-4635 | 1609451 | 1609458 | 8mer-1a | 1609451 | 1609474 | 158 | -22.81 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000592628 | hsa-miR-548aa | 1610124 | 1610130 | 7mer-m8 | 1610123 | 1610147 | 147 | -11.96 |
CAediting_1368054 | chr19_46709310_- | ENSG00000071564.13 | ENST00000592628 | hsa-miR-320e | 1610102 | 1610108 | 7mer-m8 | 1610101 | 1610118 | 142 | -15.19 |
CAediting_1368054 | chr19_46709310_- | ENSG00000071564.13 | ENST00000592628 | hsa-miR-320e | 1609753 | 1609760 | 8mer-1a | 1609753 | 1609771 | 153 | -18.55 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000592628 | hsa-miR-4635 | 1609451 | 1609458 | 8mer-1a | 1609451 | 1609474 | 158 | -22.81 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000592628 | hsa-miR-4635 | 1609762 | 1609768 | 7mer-m8 | 1609761 | 1609781 | 145 | -19.76 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000592628 | hsa-miR-589-3p | 1610480 | 1610486 | 7mer-1a | 1610480 | 1610500 | 159 | -25.07 |
CAediting_1054808 | chr15_66496985_- | ENSG00000071564.13 | ENST00000593064 | hsa-miR-4512 | 1610646 | 1610652 | 7mer-m8 | 1610645 | 1610666 | 140 | -16.15 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000593064 | hsa-miR-548aa | 1610124 | 1610130 | 7mer-m8 | 1610123 | 1610147 | 147 | -11.96 |
CAediting_1368054 | chr19_46709310_- | ENSG00000071564.13 | ENST00000593064 | hsa-miR-320e | 1610102 | 1610108 | 7mer-m8 | 1610101 | 1610118 | 142 | -15.19 |
CAediting_1368054 | chr19_46709310_- | ENSG00000071564.13 | ENST00000593064 | hsa-miR-320e | 1609753 | 1609760 | 8mer-1a | 1609753 | 1609771 | 153 | -18.55 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000593064 | hsa-miR-4635 | 1609762 | 1609768 | 7mer-m8 | 1609761 | 1609781 | 145 | -19.76 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000593064 | hsa-miR-4635 | 1609451 | 1609458 | 8mer-1a | 1609451 | 1609474 | 158 | -22.81 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000593064 | hsa-miR-589-3p | 1610480 | 1610487 | 8mer-1a | 1610480 | 1610504 | 164 | -30.16 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000453954 | hsa-miR-548aa | 1610124 | 1610130 | 7mer-m8 | 1610123 | 1610147 | 147 | -11.96 |
CAediting_1368054 | chr19_46709310_- | ENSG00000071564.13 | ENST00000453954 | hsa-miR-320e | 1610102 | 1610108 | 7mer-m8 | 1610101 | 1610118 | 142 | -15.19 |
CAediting_1368054 | chr19_46709310_- | ENSG00000071564.13 | ENST00000453954 | hsa-miR-320e | 1609753 | 1609760 | 8mer-1a | 1609753 | 1609771 | 153 | -18.55 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000453954 | hsa-miR-4635 | 1609451 | 1609458 | 8mer-1a | 1609451 | 1609474 | 158 | -22.81 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000453954 | hsa-miR-4635 | 1609762 | 1609768 | 7mer-m8 | 1609761 | 1609781 | 145 | -19.76 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000453954 | hsa-miR-589-3p | 1610480 | 1610486 | 7mer-1a | 1610480 | 1610500 | 159 | -25.07 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000585731 | hsa-miR-589-3p | 1611658 | 1611664 | 7mer-m8 | 1611657 | 1611680 | 148 | -16.76 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000590684 | hsa-miR-589-3p | 1611658 | 1611664 | 7mer-m8 | 1611657 | 1611680 | 148 | -16.76 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000395423 | hsa-miR-589-3p | 1611658 | 1611664 | 7mer-m8 | 1611657 | 1611680 | 148 | -16.76 |
CAediting_396018 | chr5_1062918_- | ENSG00000071564.13 | ENST00000585855 | hsa-miR-4635 | 1612286 | 1612292 | 7mer-m8 | 1612285 | 1612306 | 146 | -19.03 |
CAediting_524911 | chr7_5495852_- | ENSG00000071564.13 | ENST00000585855 | hsa-miR-589-3p | 1611658 | 1611664 | 7mer-m8 | 1611657 | 1611680 | 148 | -16.76 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1524209 | chrX_134546392_- | ENSG00000071564.13 | ENST00000344749 | hsa-miR-503-5p | 1611027 | 1611032 | 6mer | 1611026 | 1611048 | 148 | -20.4 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000344749 | hsa-miR-548aa | 1609444 | 1609450 | 7mer-m8 | 1609443 | 1609467 | 140 | -10.78 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000344749 | hsa-miR-548aa | 1611108 | 1611114 | 7mer-m8 | 1611107 | 1611132 | 145 | -10.65 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000344749 | hsa-miR-548aa | 1610846 | 1610852 | 7mer-m8 | 1610845 | 1610870 | 149 | -9.69 |
CAediting_580943 | chr7_100356700_+ | ENSG00000071564.13 | ENST00000344749 | hsa-miR-6840-3p | 1609496 | 1609503 | 8mer-1a | 1609496 | 1609519 | 148 | -18.92 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000592628 | hsa-miR-548aa | 1609444 | 1609450 | 7mer-m8 | 1609443 | 1609467 | 140 | -10.78 |
CAediting_1524209 | chrX_134546392_- | ENSG00000071564.13 | ENST00000593064 | hsa-miR-503-5p | 1611027 | 1611032 | 6mer | 1611026 | 1611048 | 148 | -20.4 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000593064 | hsa-miR-548aa | 1609444 | 1609450 | 7mer-m8 | 1609443 | 1609467 | 140 | -10.78 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000593064 | hsa-miR-548aa | 1611108 | 1611114 | 7mer-m8 | 1611107 | 1611132 | 145 | -10.65 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000593064 | hsa-miR-548aa | 1610846 | 1610852 | 7mer-m8 | 1610845 | 1610870 | 149 | -9.69 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000071564.13 | ENST00000453954 | hsa-miR-548aa | 1609444 | 1609450 | 7mer-m8 | 1609443 | 1609467 | 140 | -10.78 |
CAediting_1524209 | chrX_134546392_- | ENSG00000071564.13 | ENST00000585731 | hsa-miR-503-5p | 1611027 | 1611032 | 6mer | 1611026 | 1611048 | 148 | -20.4 |
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The effects of the RNA editing to the stability of the RNA structures for TCF3 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TCF3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TCF3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TCF3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TCF3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TCF3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
TCF3 | C0006413 | Burkitt Lymphoma | 2 | CTD_human;ORPHANET |
TCF3 | C0343640 | African Burkitt's lymphoma | 2 | CTD_human |
TCF3 | C4721444 | Burkitt Leukemia | 2 | CTD_human |
TCF3 | C0001768 | Agammaglobulinemia | 1 | CTD_human;GENOMICS_ENGLAND |
TCF3 | C0023452 | Childhood Acute Lymphoblastic Leukemia | 1 | CTD_human |
TCF3 | C0023453 | L2 Acute Lymphoblastic Leukemia | 1 | CTD_human |
TCF3 | C0023485 | Precursor B-Cell Lymphoblastic Leukemia-Lymphoma | 1 | CTD_human |
TCF3 | C0398686 | Primary immune deficiency disorder | 1 | GENOMICS_ENGLAND |
TCF3 | C1832241 | Agammaglobulinemia, non-Bruton type | 1 | ORPHANET |
TCF3 | C1844383 | Recurrent bacterial infection | 1 | GENOMICS_ENGLAND |
TCF3 | C1961102 | Precursor Cell Lymphoblastic Leukemia Lymphoma | 1 | CTD_human |
TCF3 | C4310786 | AGAMMAGLOBULINEMIA 8, AUTOSOMAL DOMINANT | 1 | GENOMICS_ENGLAND |