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Editing gene: TAF13 (CAeditome ID:6884)

Gene summary for TAF13

Gene summary

Gene information	Gene symbol	TAF13
	Gene ID	6884
	Gene name	TATA-box binding protein associated factor 13
	Synonyms	MRT60\|TAF(II)18\|TAF2K\|TAFII-18\|TAFII18
	Cytomap	1p13.3
	Type of gene	protein-coding
	Description	transcription initiation factor TFIID subunit 13TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDaTATA box binding protein (TBP)-associated factor, RNA polymerase II, K, 18kDtranscription initiation factor TFIID 18 kD subu
	Modification date	20210518
	UniProtAcc	Q15543
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
TAF13	GO:0005654	Transcription initiation factor TFIID subunit 13	0000052
TAF13	GO:0005730	Transcription initiation factor TFIID subunit 13	0000052
TAF13	GO:0005669	Transcription initiation factor TFIID subunit 13	29111974
TAF13	GO:0005669	Transcription initiation factor TFIID subunit 13	7729427

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RNA A-to-I events for TAF13

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000197780.8

RNA A-to-I editing events in Cancer.

CAediting_84802(109063011, -), CAediting_84803(109063036, -), CAediting_84804(109063040, -), CAediting_84805(109063059, -), CAediting_84806(109063072, -), CAediting_84807(109063083, -), CAediting_84808(109063096, -), CAediting_84809(109063103, -), CAediting_84810(109063112, -), CAediting_84811(109063135, -), CAediting_84812(109063139, -), CAediting_84813(109063171, -), CAediting_84814(109063174, -), CAediting_84815(109063177, -), CAediting_84816(109063178, -), CAediting_84817(109063181, -), CAediting_84818(109063184, -), CAediting_84819(109063201, -), CAediting_84820(109063203, -), CAediting_84821(109063211, -), CAediting_84822(109063224, -), CAediting_84823(109063235, -), CAediting_84824(109063243, -), CAediting_84825(109063256, -), CAediting_84826(109063270, -), CAediting_84827(109063287, -), CAediting_84828(109063323, -), CAediting_84829(109063475, -), CAediting_84830(109063480, -), CAediting_84831(109063494, -), CAediting_84832(109063499, -), CAediting_84833(109063509, -), CAediting_84834(109063523, -), CAediting_84835(109063525, -), CAediting_84836(109063531, -), CAediting_84837(109063538, -), CAediting_84838(109063539, -), CAediting_84839(109063547, -), CAediting_84840(109063548, -), CAediting_84841(109063550, -), CAediting_84842(109063551, -), CAediting_84843(109063553, -), CAediting_84844(109063557, -), CAediting_84845(109063570, -), CAediting_84846(109063574, -), CAediting_84847(109063579, -), CAediting_84848(109063580, -), CAediting_84849(109063594, -), CAediting_84850(109063598, -), CAediting_84851(109063602, -), CAediting_84852(109063606, -), CAediting_84853(109063609, -), CAediting_84854(109063610, -), CAediting_84855(109063611, -), CAediting_84856(109063612, -), CAediting_84857(109063613, -), CAediting_84858(109063614, -), CAediting_84859(109063617, -), CAediting_84860(109063618, -), CAediting_84861(109063619, -), CAediting_84862(109063620, -), CAediting_84863(109063621, -), CAediting_84864(109063624, -), CAediting_84865(109063630, -), CAediting_84866(109063635, -), CAediting_84867(109063637, -), CAediting_84868(109063643, -), CAediting_84869(109063645, -), CAediting_84870(109063646, -), CAediting_84871(109063655, -), CAediting_84872(109063658, -), CAediting_84873(109063660, -), CAediting_84874(109063669, -), CAediting_84875(109063674, -), CAediting_84876(109063692, -), CAediting_84877(109063706, -), CAediting_84878(109063709, -), CAediting_84879(109063714, -), CAediting_84880(109063723, -), CAediting_84881(109063742, -), CAediting_84882(109063745, -), CAediting_84883(109063749, -), CAediting_84884(109063750, -), CAediting_84885(109063759, -), CAediting_84886(109063767, -), CAediting_84887(109063774, -), CAediting_84888(109063783, -), CAediting_84889(109063892, -), CAediting_84890(109063899, -), CAediting_84891(109063901, -), CAediting_84892(109063913, -), CAediting_84893(109063914, -), CAediting_84894(109063932, -), CAediting_84895(109063936, -), CAediting_84896(109063944, -), CAediting_84897(109063964, -), CAediting_84898(109063992, -), CAediting_84899(109063993, -), CAediting_84900(109063999, -), CAediting_84901(109064008, -), CAediting_84902(109064009, -), CAediting_84903(109064019, -), CAediting_84904(109064022, -), CAediting_84905(109064033, -), CAediting_84906(109064049, -), CAediting_84907(109064058, -), CAediting_84908(109064071, -), CAediting_84909(109064075, -), CAediting_84910(109064076, -), CAediting_84911(109064089, -), CAediting_84912(109064096, -), CAediting_84913(109064101, -), CAediting_84914(109064111, -), CAediting_84915(109064125, -), CAediting_84916(109066752, -), CAediting_84917(109068212, -), CAediting_84918(109068252, -), CAediting_84919(109068267, -), CAediting_84920(109068286, -), CAediting_84921(109068334, -), CAediting_84922(109068356, -), CAediting_84923(109068575, -), CAediting_84924(109068919, -), CAediting_84925(109068950, -), CAediting_84926(109070291, -), CAediting_84927(109070316, -), CAediting_84928(109071086, -), CAediting_84929(109071117, -), CAediting_84930(109071129, -), CAediting_84931(109071130, -), CAediting_84932(109071710, -), CAediting_84933(109071711, -), CAediting_84934(109072863, -), CAediting_84935(109072936, -), CAediting_84936(109072937, -),

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RNA editing positional annotations for TAF13 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_84802	chr1_109063011_-	UTR3
CAediting_84803	chr1_109063036_-	UTR3
CAediting_84804	chr1_109063040_-	UTR3
CAediting_84805	chr1_109063059_-	UTR3
CAediting_84806	chr1_109063072_-	UTR3
CAediting_84807	chr1_109063083_-	intronic
CAediting_84808	chr1_109063096_-	intronic
CAediting_84809	chr1_109063103_-	intronic
CAediting_84810	chr1_109063112_-	intronic
CAediting_84811	chr1_109063135_-	intronic
CAediting_84812	chr1_109063139_-	intronic
CAediting_84813	chr1_109063171_-	intronic
CAediting_84814	chr1_109063174_-	intronic
CAediting_84815	chr1_109063177_-	intronic
CAediting_84816	chr1_109063178_-	intronic
CAediting_84817	chr1_109063181_-	intronic
CAediting_84818	chr1_109063184_-	intronic
CAediting_84819	chr1_109063201_-	intronic
CAediting_84820	chr1_109063203_-	intronic
CAediting_84821	chr1_109063211_-	intronic
CAediting_84822	chr1_109063224_-	intronic
CAediting_84823	chr1_109063235_-	intronic
CAediting_84824	chr1_109063243_-	intronic
CAediting_84825	chr1_109063256_-	intronic
CAediting_84826	chr1_109063270_-	intronic
CAediting_84827	chr1_109063287_-	intronic
CAediting_84828	chr1_109063323_-	intronic
CAediting_84829	chr1_109063475_-	intronic
CAediting_84830	chr1_109063480_-	intronic
CAediting_84831	chr1_109063494_-	intronic
CAediting_84832	chr1_109063499_-	intronic
CAediting_84833	chr1_109063509_-	intronic
CAediting_84834	chr1_109063523_-	intronic
CAediting_84835	chr1_109063525_-	intronic
CAediting_84836	chr1_109063531_-	intronic
CAediting_84837	chr1_109063538_-	intronic
CAediting_84838	chr1_109063539_-	intronic
CAediting_84839	chr1_109063547_-	intronic
CAediting_84840	chr1_109063548_-	intronic
CAediting_84841	chr1_109063550_-	intronic
CAediting_84842	chr1_109063551_-	intronic
CAediting_84843	chr1_109063553_-	intronic
CAediting_84844	chr1_109063557_-	intronic
CAediting_84845	chr1_109063570_-	intronic
CAediting_84846	chr1_109063574_-	intronic
CAediting_84847	chr1_109063579_-	intronic
CAediting_84848	chr1_109063580_-	intronic
CAediting_84849	chr1_109063594_-	intronic
CAediting_84850	chr1_109063598_-	intronic
CAediting_84851	chr1_109063602_-	intronic
CAediting_84852	chr1_109063606_-	intronic
CAediting_84853	chr1_109063609_-	intronic
CAediting_84854	chr1_109063610_-	intronic
CAediting_84855	chr1_109063611_-	intronic
CAediting_84856	chr1_109063612_-	intronic
CAediting_84857	chr1_109063613_-	intronic
CAediting_84858	chr1_109063614_-	intronic
CAediting_84859	chr1_109063617_-	intronic
CAediting_84860	chr1_109063618_-	intronic
CAediting_84861	chr1_109063619_-	intronic
CAediting_84862	chr1_109063620_-	intronic
CAediting_84863	chr1_109063621_-	intronic
CAediting_84864	chr1_109063624_-	intronic
CAediting_84865	chr1_109063630_-	intronic
CAediting_84866	chr1_109063635_-	intronic
CAediting_84867	chr1_109063637_-	intronic
CAediting_84868	chr1_109063643_-	intronic
CAediting_84869	chr1_109063645_-	intronic
CAediting_84870	chr1_109063646_-	intronic
CAediting_84871	chr1_109063655_-	intronic
CAediting_84872	chr1_109063658_-	intronic
CAediting_84873	chr1_109063660_-	intronic
CAediting_84874	chr1_109063669_-	intronic
CAediting_84875	chr1_109063674_-	intronic
CAediting_84876	chr1_109063692_-	intronic
CAediting_84877	chr1_109063706_-	intronic
CAediting_84878	chr1_109063709_-	intronic
CAediting_84879	chr1_109063714_-	intronic
CAediting_84880	chr1_109063723_-	intronic
CAediting_84881	chr1_109063742_-	intronic
CAediting_84882	chr1_109063745_-	intronic
CAediting_84883	chr1_109063749_-	intronic
CAediting_84884	chr1_109063750_-	intronic
CAediting_84885	chr1_109063759_-	intronic
CAediting_84886	chr1_109063767_-	intronic
CAediting_84887	chr1_109063774_-	intronic
CAediting_84888	chr1_109063783_-	intronic
CAediting_84889	chr1_109063892_-	intronic
CAediting_84890	chr1_109063899_-	intronic
CAediting_84891	chr1_109063901_-	intronic
CAediting_84892	chr1_109063913_-	intronic
CAediting_84893	chr1_109063914_-	intronic
CAediting_84894	chr1_109063932_-	intronic
CAediting_84895	chr1_109063936_-	intronic
CAediting_84896	chr1_109063944_-	intronic
CAediting_84897	chr1_109063964_-	intronic
CAediting_84898	chr1_109063992_-	intronic
CAediting_84899	chr1_109063993_-	intronic
CAediting_84900	chr1_109063999_-	intronic
CAediting_84901	chr1_109064008_-	intronic
CAediting_84902	chr1_109064009_-	intronic
CAediting_84903	chr1_109064019_-	intronic
CAediting_84904	chr1_109064022_-	intronic
CAediting_84905	chr1_109064033_-	intronic
CAediting_84906	chr1_109064049_-	intronic
CAediting_84907	chr1_109064058_-	intronic
CAediting_84908	chr1_109064071_-	intronic
CAediting_84909	chr1_109064075_-	intronic
CAediting_84910	chr1_109064076_-	intronic
CAediting_84911	chr1_109064089_-	intronic
CAediting_84912	chr1_109064096_-	intronic
CAediting_84913	chr1_109064101_-	intronic
CAediting_84914	chr1_109064111_-	intronic
CAediting_84915	chr1_109064125_-	intronic
CAediting_84916	chr1_109066752_-	intronic
CAediting_84917	chr1_109068212_-	intronic
CAediting_84918	chr1_109068252_-	intronic
CAediting_84919	chr1_109068267_-	intronic
CAediting_84920	chr1_109068286_-	intronic
CAediting_84921	chr1_109068334_-	intronic
CAediting_84922	chr1_109068356_-	intronic
CAediting_84923	chr1_109068575_-	intronic
CAediting_84924	chr1_109068919_-	intronic
CAediting_84925	chr1_109068950_-	intronic
CAediting_84926	chr1_109070291_-	intronic
CAediting_84927	chr1_109070316_-	intronic
CAediting_84928	chr1_109071086_-	intronic
CAediting_84929	chr1_109071117_-	intronic
CAediting_84930	chr1_109071129_-	intronic
CAediting_84931	chr1_109071130_-	intronic
CAediting_84932	chr1_109071710_-	intronic
CAediting_84933	chr1_109071711_-	intronic
CAediting_84934	chr1_109072863_-	intronic
CAediting_84935	chr1_109072936_-	intronic
CAediting_84936	chr1_109072937_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_84802	chr1_109063011_-	SINE	Alu	AluY
CAediting_84803	chr1_109063036_-	SINE	Alu	AluY
CAediting_84804	chr1_109063040_-	SINE	Alu	AluY
CAediting_84805	chr1_109063059_-	SINE	Alu	AluY
CAediting_84806	chr1_109063072_-	SINE	Alu	AluY
CAediting_84807	chr1_109063083_-	SINE	Alu	AluY
CAediting_84808	chr1_109063096_-	SINE	Alu	AluY
CAediting_84809	chr1_109063103_-	SINE	Alu	AluY
CAediting_84810	chr1_109063112_-	SINE	Alu	AluY
CAediting_84811	chr1_109063135_-	SINE	Alu	AluY
CAediting_84812	chr1_109063139_-	SINE	Alu	AluY
CAediting_84813	chr1_109063171_-	SINE	Alu	AluY
CAediting_84814	chr1_109063174_-	SINE	Alu	AluY
CAediting_84815	chr1_109063177_-	SINE	Alu	AluY
CAediting_84816	chr1_109063178_-	SINE	Alu	AluY
CAediting_84817	chr1_109063181_-	SINE	Alu	AluY
CAediting_84818	chr1_109063184_-	SINE	Alu	AluY
CAediting_84819	chr1_109063201_-	SINE	Alu	AluY
CAediting_84820	chr1_109063203_-	SINE	Alu	AluY
CAediting_84821	chr1_109063211_-	SINE	Alu	AluY
CAediting_84822	chr1_109063224_-	SINE	Alu	AluY
CAediting_84823	chr1_109063235_-	SINE	Alu	AluY
CAediting_84824	chr1_109063243_-	SINE	Alu	AluY
CAediting_84825	chr1_109063256_-	SINE	Alu	AluY
CAediting_84826	chr1_109063270_-	SINE	Alu	AluY
CAediting_84827	chr1_109063287_-	SINE	Alu	AluY
CAediting_84829	chr1_109063475_-	SINE	Alu	AluSz6
CAediting_84830	chr1_109063480_-	SINE	Alu	AluSz6
CAediting_84831	chr1_109063494_-	SINE	Alu	AluSz6
CAediting_84832	chr1_109063499_-	SINE	Alu	AluSz6
CAediting_84833	chr1_109063509_-	SINE	Alu	AluSz6
CAediting_84834	chr1_109063523_-	SINE	Alu	AluSz6
CAediting_84835	chr1_109063525_-	SINE	Alu	AluSz6
CAediting_84836	chr1_109063531_-	SINE	Alu	AluSz6
CAediting_84837	chr1_109063538_-	SINE	Alu	AluSz6
CAediting_84838	chr1_109063539_-	SINE	Alu	AluSz6
CAediting_84839	chr1_109063547_-	SINE	Alu	AluSz6
CAediting_84840	chr1_109063548_-	SINE	Alu	AluSz6
CAediting_84841	chr1_109063550_-	SINE	Alu	AluSz6
CAediting_84842	chr1_109063551_-	SINE	Alu	AluSz6
CAediting_84843	chr1_109063553_-	SINE	Alu	AluSz6
CAediting_84844	chr1_109063557_-	SINE	Alu	AluSz6
CAediting_84845	chr1_109063570_-	SINE	Alu	AluSz6
CAediting_84846	chr1_109063574_-	SINE	Alu	AluSz6
CAediting_84847	chr1_109063579_-	SINE	Alu	AluSz6
CAediting_84848	chr1_109063580_-	SINE	Alu	AluSz6
CAediting_84849	chr1_109063594_-	SINE	Alu	AluSz6
CAediting_84850	chr1_109063598_-	SINE	Alu	AluSz6
CAediting_84851	chr1_109063602_-	SINE	Alu	AluSz6
CAediting_84852	chr1_109063606_-	SINE	Alu	AluSz6
CAediting_84853	chr1_109063609_-	SINE	Alu	AluSz6
CAediting_84854	chr1_109063610_-	SINE	Alu	AluSz6
CAediting_84855	chr1_109063611_-	SINE	Alu	AluSz6
CAediting_84856	chr1_109063612_-	SINE	Alu	AluSz6
CAediting_84857	chr1_109063613_-	SINE	Alu	AluSz6
CAediting_84858	chr1_109063614_-	SINE	Alu	AluSz6
CAediting_84859	chr1_109063617_-	SINE	Alu	AluSz6
CAediting_84860	chr1_109063618_-	SINE	Alu	AluSz6
CAediting_84861	chr1_109063619_-	SINE	Alu	AluSz6
CAediting_84862	chr1_109063620_-	SINE	Alu	AluSz6
CAediting_84863	chr1_109063621_-	SINE	Alu	AluSz6
CAediting_84864	chr1_109063624_-	SINE	Alu	AluSz6
CAediting_84865	chr1_109063630_-	SINE	Alu	AluSz6
CAediting_84866	chr1_109063635_-	SINE	Alu	AluSz6
CAediting_84867	chr1_109063637_-	SINE	Alu	AluSz6
CAediting_84868	chr1_109063643_-	SINE	Alu	AluSz6
CAediting_84869	chr1_109063645_-	SINE	Alu	AluSz6
CAediting_84870	chr1_109063646_-	SINE	Alu	AluSz6
CAediting_84871	chr1_109063655_-	SINE	Alu	AluSz6
CAediting_84872	chr1_109063658_-	SINE	Alu	AluSz6
CAediting_84873	chr1_109063660_-	SINE	Alu	AluSz6
CAediting_84874	chr1_109063669_-	SINE	Alu	AluSz6
CAediting_84875	chr1_109063674_-	SINE	Alu	AluSz6
CAediting_84876	chr1_109063692_-	SINE	Alu	AluSz6
CAediting_84877	chr1_109063706_-	SINE	Alu	AluSz6
CAediting_84878	chr1_109063709_-	SINE	Alu	AluSz6
CAediting_84879	chr1_109063714_-	SINE	Alu	AluSz6
CAediting_84880	chr1_109063723_-	SINE	Alu	AluSz6
CAediting_84889	chr1_109063892_-	SINE	Alu	AluSc
CAediting_84890	chr1_109063899_-	SINE	Alu	AluSc
CAediting_84891	chr1_109063901_-	SINE	Alu	AluSc
CAediting_84892	chr1_109063913_-	SINE	Alu	AluSc
CAediting_84893	chr1_109063914_-	SINE	Alu	AluSc
CAediting_84894	chr1_109063932_-	SINE	Alu	AluSc
CAediting_84895	chr1_109063936_-	SINE	Alu	AluSc
CAediting_84896	chr1_109063944_-	SINE	Alu	AluSc
CAediting_84897	chr1_109063964_-	SINE	Alu	AluSc
CAediting_84898	chr1_109063992_-	SINE	Alu	AluSc
CAediting_84899	chr1_109063993_-	SINE	Alu	AluSc
CAediting_84900	chr1_109063999_-	SINE	Alu	AluSc
CAediting_84901	chr1_109064008_-	SINE	Alu	AluSc
CAediting_84902	chr1_109064009_-	SINE	Alu	AluSc
CAediting_84903	chr1_109064019_-	SINE	Alu	AluSc
CAediting_84904	chr1_109064022_-	SINE	Alu	AluSc
CAediting_84905	chr1_109064033_-	SINE	Alu	AluSc
CAediting_84906	chr1_109064049_-	SINE	Alu	AluSc
CAediting_84907	chr1_109064058_-	SINE	Alu	AluSc
CAediting_84908	chr1_109064071_-	SINE	Alu	AluSc
CAediting_84909	chr1_109064075_-	SINE	Alu	AluSc
CAediting_84910	chr1_109064076_-	SINE	Alu	AluSc
CAediting_84911	chr1_109064089_-	SINE	Alu	AluSc
CAediting_84912	chr1_109064096_-	SINE	Alu	AluSc
CAediting_84913	chr1_109064101_-	SINE	Alu	AluSc
CAediting_84914	chr1_109064111_-	SINE	Alu	AluSc
CAediting_84915	chr1_109064125_-	SINE	Alu	AluSc
CAediting_84916	chr1_109066752_-	SINE	Alu	AluY
CAediting_84917	chr1_109068212_-	SINE	Alu	AluSz6
CAediting_84918	chr1_109068252_-	SINE	Alu	AluSz6
CAediting_84919	chr1_109068267_-	SINE	Alu	AluSz6
CAediting_84920	chr1_109068286_-	SINE	Alu	AluSz6
CAediting_84921	chr1_109068334_-	SINE	Alu	AluSz6
CAediting_84922	chr1_109068356_-	SINE	Alu	AluSz6
CAediting_84923	chr1_109068575_-	SINE	Alu	AluJb
CAediting_84924	chr1_109068919_-	SINE	Alu	AluSx
CAediting_84925	chr1_109068950_-	SINE	Alu	AluSx
CAediting_84926	chr1_109070291_-	SINE	Alu	AluSc
CAediting_84927	chr1_109070316_-	SINE	Alu	AluSc
CAediting_84928	chr1_109071086_-	SINE	Alu	AluJo
CAediting_84929	chr1_109071117_-	SINE	Alu	AluJo
CAediting_84930	chr1_109071129_-	SINE	Alu	AluJo
CAediting_84931	chr1_109071130_-	SINE	Alu	AluJo
CAediting_84932	chr1_109071710_-	SINE	Alu	AluSc
CAediting_84933	chr1_109071711_-	SINE	Alu	AluSc
CAediting_84934	chr1_109072863_-	SINE	Alu	AluSz
CAediting_84935	chr1_109072936_-	SINE	Alu	AluSz
CAediting_84936	chr1_109072937_-	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for TAF13

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000197780.8.TAF13.

Correlation between RNA A-to-I editing and PSI for ENSG00000197780.8.TAF13.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TAF13

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TAF13

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TAF13

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_84802	chr1_109063011_-	ENSG00000197780.8	ENST00000461096	hsa-miR-3124-3p	109063006	109063012	7mer-m8	109063005	109063026	140.00	-8.96
CAediting_84804	chr1_109063040_-	ENSG00000197780.8	ENST00000461096	hsa-miR-339-5p	109063039	109063045	7mer-m8	109063038	109063060	163.00	-27.29

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_84803	chr1_109063036_-	ENSG00000197780.8	ENST00000461096	hsa-miR-924	109063031	109063036	6mer	109063030	109063049	144	-20.42

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TAF13

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000461096.5	nonsense_mediated_decay

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_84802	ENST00000461096.5	chr1_109063011_-	-257.40	-253.80	-258.30
CAediting_84803	ENST00000461096.5	chr1_109063036_-	-253.60	-253.80	-258.30
CAediting_84804	ENST00000461096.5	chr1_109063040_-	-254.80	-253.80	-258.30
CAediting_84805	ENST00000461096.5	chr1_109063059_-	-253.40	-253.80	-258.30
CAediting_84806	ENST00000461096.5	chr1_109063072_-	-253.80	-253.80	-258.30

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Relation with ADAR for TAF13

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
HNSC	CAediting_84813	chr1_109063171_-	.	.	0.0134808278362022	0.252715832296462	.	.
TGCT	CAediting_84816	chr1_109063178_-	0.0285833575122607	0.282775395906567	.	.	.	.
LUAD	CAediting_84838	chr1_109063539_-	0.0098984360512256	0.243874198759273	.	.	.	.
LUSC	CAediting_84838	chr1_109063539_-	0.00347909583086237	0.311745723910002	.	.	.	.
BRCA	CAediting_84841	chr1_109063550_-	0.00245243646455867	0.233610856748317	.	.	.	.
GBM	CAediting_84841	chr1_109063550_-	2.51997369731813e-05	0.357878171738548	.	.	.	.
STAD	CAediting_84841	chr1_109063550_-	0.019585545146243	0.189801223276023	.	.	.	.
ESCA	CAediting_84841	chr1_109063550_-	0.00149472944657677	0.35142633938634	.	.	.	.
OV	CAediting_84841	chr1_109063550_-	0.00505920832530601	0.186694230052915	.	.	.	.
GBM	CAediting_84842	chr1_109063551_-	0.0144073592241644	0.244050565333037	.	.	.	.
STAD	CAediting_84842	chr1_109063551_-	0.00335645488793265	0.279828213611867	.	.	.	.
ESCA	CAediting_84842	chr1_109063551_-	0.000956488818126284	0.412445213995084	.	.	.	.
OV	CAediting_84842	chr1_109063551_-	0.000669940292971775	0.270306355155035	.	.	.	.
BLCA	CAediting_84845	chr1_109063570_-	.	.	0.00291729490517065	0.247187637375032	.	.
LGG	CAediting_84845	chr1_109063570_-	0.00188656127470476	0.239481281014555	.	.	.	.
BRCA	CAediting_84845	chr1_109063570_-	4.99781994743816e-11	0.283719562612383	.	.	.	.
CESC	CAediting_84845	chr1_109063570_-	0.0054328468901399	0.264580537587379	.	.	.	.
LUSC	CAediting_84845	chr1_109063570_-	0.0229219729806306	0.185051082114283	.	.	0.000169262420322178	0.301417941471365
GBM	CAediting_84845	chr1_109063570_-	1.19416398718194e-05	0.367029252887802	.	.	.	.
UCEC	CAediting_84845	chr1_109063570_-	0.000329206555066598	0.218549827905637	0.00519863899434382	0.17088209865315	.	.
OV	CAediting_84845	chr1_109063570_-	1.16976372798873e-05	0.292045746178077	.	.	0.0463944866397159	0.13505855611458
SKCM	CAediting_84845	chr1_109063570_-	0.000218886639530351	0.285648076475028	.	.	.	.
SARC	CAediting_84845	chr1_109063570_-	0.000107198267432064	0.427089685655908	.	.	.	.
TGCT	CAediting_84845	chr1_109063570_-	0.0421576450392995	0.270098788298975	.	.	.	.
BRCA	CAediting_84850	chr1_109063598_-	2.20917016714818e-07	0.32754603788839	.	.	.	.
LUAD	CAediting_84850	chr1_109063598_-	0.000171730184244818	0.332491539749511	.	.	.	.
HNSC	CAediting_84850	chr1_109063598_-	.	.	.	.	0.00677804360914371	0.288260691840454
UCEC	CAediting_84850	chr1_109063598_-	0.00102652792221773	0.31305393300874	.	.	0.00175812754242024	0.298987810161089
LUAD	CAediting_84852	chr1_109063606_-	1.03295975219554e-05	0.363174900241105	.	.	.	.
HNSC	CAediting_84852	chr1_109063606_-	0.000330179110140465	0.357082631096559	.	.	.	.
UCEC	CAediting_84852	chr1_109063606_-	.	.	7.93513935803187e-05	0.445172146663092	0.000305976035159172	0.410814318401519
BLCA	CAediting_84853	chr1_109063609_-	0.000140740120145915	0.237088231545984	.	.	0.000227846189004495	0.229763925722676
LGG	CAediting_84853	chr1_109063609_-	3.46584151646399e-13	0.383598098869007	.	.	.	.
BRCA	CAediting_84853	chr1_109063609_-	8.68280656509052e-22	0.32567576001914	.	.	.	.
LIHC	CAediting_84853	chr1_109063609_-	0.00161542492721661	0.192068411358946	.	.	.	.
CESC	CAediting_84853	chr1_109063609_-	0.00061135744064081	0.245734980615303	.	.	.	.
LUAD	CAediting_84853	chr1_109063609_-	2.47743582782717e-07	0.257659262354489	.	.	.	.
LUSC	CAediting_84853	chr1_109063609_-	2.56352078546663e-11	0.351895842425695	.	.	.	.
GBM	CAediting_84853	chr1_109063609_-	1.17684349130492e-09	0.498541948767453	.	.	.	.
PRAD	CAediting_84853	chr1_109063609_-	0.00134754277688141	0.219811562325153	.	.	.	.
HNSC	CAediting_84853	chr1_109063609_-	4.23565451683988e-06	0.250106279374953	0.0126203800570997	0.13717783176134	.	.
STAD	CAediting_84853	chr1_109063609_-	0.0178194458297247	0.172654258539219	.	.	.	.
THCA	CAediting_84853	chr1_109063609_-	0.00267348259876429	0.185158741405755	.	.	.	.
UCEC	CAediting_84853	chr1_109063609_-	8.70809562274131e-06	0.240645638603416	.	.	.	.
OV	CAediting_84853	chr1_109063609_-	0.000609415704486414	0.210376106940751	.	.	.	.
PAAD	CAediting_84853	chr1_109063609_-	0.0176249341427813	0.231240100108896	.	.	.	.
PCPG	CAediting_84853	chr1_109063609_-	.	.	0.022219292422768	0.267348904512962	.	.
SKCM	CAediting_84853	chr1_109063609_-	1.36187849282486e-05	0.264200508789619	.	.	.	.
SARC	CAediting_84853	chr1_109063609_-	4.06416003886619e-09	0.465689744486993	.	.	.	.
TGCT	CAediting_84853	chr1_109063609_-	1.14423330902832e-06	0.437313745637882	.	.	.	.
THYM	CAediting_84853	chr1_109063609_-	0.00403420640108353	0.363026948116302	.	.	.	.
BLCA	CAediting_84854	chr1_109063610_-	5.64692444238192e-05	0.272926655216935	.	.	0.0296810824057772	0.149377241979251
LGG	CAediting_84854	chr1_109063610_-	3.00937502954259e-08	0.393487264903719	.	.	.	.
BRCA	CAediting_84854	chr1_109063610_-	2.15391380796761e-29	0.402855212602251	.	.	.	.
LIHC	CAediting_84854	chr1_109063610_-	0.0095539194207336	0.161697146772534	.	.	.	.
CESC	CAediting_84854	chr1_109063610_-	0.00134750438049034	0.241847164908673	.	.	0.0451259737320243	0.152534913693891
LUAD	CAediting_84854	chr1_109063610_-	8.23287375272952e-12	0.344597242079365	.	.	.	.
COAD	CAediting_84854	chr1_109063610_-	0.00506796107381693	0.206359508636685	.	.	.	.
LUSC	CAediting_84854	chr1_109063610_-	9.22665955472262e-08	0.309410453921627	.	.	0.0225457685784316	0.134854926741482
GBM	CAediting_84854	chr1_109063610_-	7.42675989704697e-09	0.538662314553527	.	.	.	.
PRAD	CAediting_84854	chr1_109063610_-	3.2008631124053e-05	0.331560524926247	.	.	.	.
HNSC	CAediting_84854	chr1_109063610_-	2.51108362976418e-05	0.236496879066233	.	.	.	.
STAD	CAediting_84854	chr1_109063610_-	0.022269999870089	0.160773576002742	.	.	.	.
UCEC	CAediting_84854	chr1_109063610_-	1.56898219725841e-05	0.247321865729972	.	.	.	.
OV	CAediting_84854	chr1_109063610_-	7.36781382184264e-06	0.278177822563094	.	.	.	.
SKCM	CAediting_84854	chr1_109063610_-	6.4045179854682e-07	0.333285833436584	.	.	.	.
SARC	CAediting_84854	chr1_109063610_-	8.68775179939479e-06	0.399904186910925	.	.	.	.
TGCT	CAediting_84854	chr1_109063610_-	4.65188367755261e-11	0.606333509082514	.	.	.	.
BRCA	CAediting_84855	chr1_109063611_-	0.00885264421664214	0.246289282708815	.	.	.	.
OV	CAediting_84855	chr1_109063611_-	.	.	.	.	0.0476905839771705	0.270738814887161
BRCA	CAediting_84858	chr1_109063614_-	0.0299431090356433	0.227715254401341	.	.	.	.
BRCA	CAediting_84859	chr1_109063617_-	0.0304704084111442	0.192885621984842	.	.	.	.
LUAD	CAediting_84859	chr1_109063617_-	0.00183747930920871	0.345163095758902	.	.	.	.
STAD	CAediting_84859	chr1_109063617_-	.	.	.	.	0.0363350792938123	0.256255513574017
UCEC	CAediting_84859	chr1_109063617_-	.	.	.	.	0.0324768919666027	0.265616251091569
BRCA	CAediting_84860	chr1_109063618_-	4.3957411332688e-11	0.293097224196298	.	.	.	.
LUAD	CAediting_84860	chr1_109063618_-	0.00110555006767904	0.214698946693207	.	.	.	.
LUSC	CAediting_84860	chr1_109063618_-	0.0391645935751565	0.165853638999264	.	.	.	.
PRAD	CAediting_84860	chr1_109063618_-	.	.	0.0425872657949628	0.279615528328411	.	.
HNSC	CAediting_84860	chr1_109063618_-	0.03738388923356	0.144442008587107	.	.	.	.
ESCA	CAediting_84860	chr1_109063618_-	0.0416773730328793	0.218870601627918	.	.	.	.
SKCM	CAediting_84860	chr1_109063618_-	0.0495946254593716	0.164514784374962	.	.	.	.
SARC	CAediting_84860	chr1_109063618_-	0.0052694953423703	0.361734507108635	.	.	.	.
BRCA	CAediting_84862	chr1_109063620_-	0.00204370226542038	0.203654416951348	.	.	.	.
UCEC	CAediting_84862	chr1_109063620_-	.	.	.	.	0.036219988675924	0.250833723806343
BLCA	CAediting_84863	chr1_109063621_-	0.0112873138371771	0.201101610381961	.	.	.	.
LGG	CAediting_84863	chr1_109063621_-	9.97000496097152e-10	0.552457297360515	.	.	.	.
BRCA	CAediting_84863	chr1_109063621_-	3.08966128608137e-17	0.343575824232048	.	.	.	.
CESC	CAediting_84863	chr1_109063621_-	0.0399081625356725	0.172049073614892	.	.	.	.
LUAD	CAediting_84863	chr1_109063621_-	1.27453236375448e-05	0.250676207776119	.	.	.	.
LUSC	CAediting_84863	chr1_109063621_-	0.000662687679525811	0.239927390998763	.	.	.	.
GBM	CAediting_84863	chr1_109063621_-	0.0006335769542325	0.357244233857646	.	.	.	.
PRAD	CAediting_84863	chr1_109063621_-	2.55525833856188e-05	0.437283603153822	.	.	.	.
HNSC	CAediting_84863	chr1_109063621_-	8.62935015029246e-08	0.315956928712954	.	.	.	.
STAD	CAediting_84863	chr1_109063621_-	0.00407862856001847	0.213676604744451	.	.	.	.
OV	CAediting_84863	chr1_109063621_-	6.17389592779823e-05	0.269094646242861	.	.	.	.
SKCM	CAediting_84863	chr1_109063621_-	0.00490883325998425	0.223438409630475	.	.	.	.
SARC	CAediting_84863	chr1_109063621_-	0.032984681375009	0.240203465898251	.	.	.	.
TGCT	CAediting_84863	chr1_109063621_-	0.015220652221818	0.26250671523602	.	.	.	.
BRCA	CAediting_84879	chr1_109063714_-	0.00197164659930757	0.274207381443622	.	.	.	.
UCEC	CAediting_84879	chr1_109063714_-	.	.	0.0156553389946515	0.262981209626473	.	.
ESCA	CAediting_84879	chr1_109063714_-	2.03114248269636e-05	0.426371917366604	.	.	.	.
OV	CAediting_84879	chr1_109063714_-	0.000516566604726594	0.255544899198694	.	.	.	.
BRCA	CAediting_84880	chr1_109063723_-	0.0176881573551611	0.171490077193783	.	.	.	.
LIHC	CAediting_84880	chr1_109063723_-	0.000807571586168378	0.28706844964389	.	.	.	.
CESC	CAediting_84880	chr1_109063723_-	0.0443306973997491	0.258430234363752	.	.	.	.
HNSC	CAediting_84880	chr1_109063723_-	0.00794070153465441	0.251887032618049	.	.	.	.
UCEC	CAediting_84880	chr1_109063723_-	0.023380210747805	0.210417102081292	.	.	.	.
OV	CAediting_84880	chr1_109063723_-	0.000182655640271847	0.254848427321673	.	.	.	.
BRCA	CAediting_84883	chr1_109063749_-	0.00159705081658163	0.331643128478507	.	.	.	.
LIHC	CAediting_84883	chr1_109063749_-	0.000153428321658473	0.397089039686444	.	.	.	.
BRCA	CAediting_84889	chr1_109063892_-	0.000620132957105853	0.343148108649923	.	.	.	.
HNSC	CAediting_84889	chr1_109063892_-	3.21517279358169e-05	0.484822353832071	.	.	.	.
BLCA	CAediting_84891	chr1_109063901_-	0.0164856262453366	0.2837488177874	.	.	.	.
LGG	CAediting_84891	chr1_109063901_-	0.000119558596821467	0.336047818634211	.	.	.	.
BRCA	CAediting_84891	chr1_109063901_-	3.80745230445668e-33	0.637772278821265	.	.	.	.
CESC	CAediting_84891	chr1_109063901_-	1.00755609304537e-08	0.620497762399699	.	.	.	.
LUAD	CAediting_84891	chr1_109063901_-	0.000120029698962187	0.369942547468879	.	.	.	.
LUSC	CAediting_84891	chr1_109063901_-	8.92970274311962e-09	0.560902602852523	0.0162499155013113	0.252730885861235	0.00360670204715913	0.303771155273785
GBM	CAediting_84891	chr1_109063901_-	0.0088439033025144	0.322266427360654	.	.	.	.
PRAD	CAediting_84891	chr1_109063901_-	1.43910537105439e-09	0.590158246854498	.	.	.	.
HNSC	CAediting_84891	chr1_109063901_-	7.71683152871709e-09	0.399753944426837	.	.	.	.
UCEC	CAediting_84891	chr1_109063901_-	4.84293810309145e-13	0.515105499645298	0.0316397119657357	0.16393978337035	.	.
OV	CAediting_84891	chr1_109063901_-	0.000196533984036707	0.333602389689965	.	.	.	.
SKCM	CAediting_84891	chr1_109063901_-	3.16374348884698e-09	0.574664960390664	.	.	.	.
TGCT	CAediting_84891	chr1_109063901_-	3.37685623519455e-14	0.739865643013758	.	.	.	.
LGG	CAediting_84892	chr1_109063913_-	7.24640652861884e-05	0.421468146517612	.	.	.	.
BRCA	CAediting_84892	chr1_109063913_-	2.36508267627426e-20	0.575417775131873	.	.	.	.
LUAD	CAediting_84892	chr1_109063913_-	0.0020207837940146	0.378866079246948	.	.	.	.
LUSC	CAediting_84892	chr1_109063913_-	0.00129947777023048	0.405717554679365	.	.	.	.
HNSC	CAediting_84892	chr1_109063913_-	5.12929612030847e-06	0.379726662645812	8.33874212582321e-05	0.330877026163334	.	.
UCEC	CAediting_84892	chr1_109063913_-	8.17674970359608e-09	0.490923067018351	.	.	.	.
OV	CAediting_84892	chr1_109063913_-	0.000994891399895029	0.322767173862635	.	.	.	.
SKCM	CAediting_84892	chr1_109063913_-	3.4825816448128e-07	0.58295012841243	.	.	.	.
TGCT	CAediting_84892	chr1_109063913_-	8.52805829944069e-12	0.663063965320198	.	.	.	.
BRCA	CAediting_84893	chr1_109063914_-	6.09361824393232e-13	0.536702694654175	.	.	.	.
HNSC	CAediting_84893	chr1_109063914_-	9.05705888347568e-06	0.465891657371178	.	.	.	.
UCEC	CAediting_84893	chr1_109063914_-	0.00763156964701516	0.299939179420574	.	.	.	.
OV	CAediting_84893	chr1_109063914_-	0.000197359354742011	0.419699947238815	.	.	.	.
TGCT	CAediting_84893	chr1_109063914_-	1.38620019086538e-09	0.674202691063246	.	.	.	.
BRCA	CAediting_84894	chr1_109063932_-	0.00626545465160075	0.248218565154251	.	.	.	.
HNSC	CAediting_84894	chr1_109063932_-	0.000598855753682228	0.437262184744159	.	.	0.0460622855420607	0.263026655526902
TGCT	CAediting_84894	chr1_109063932_-	5.17549460761066e-10	0.671032711892342	.	.	.	.
LGG	CAediting_84898	chr1_109063992_-	0.0254627182806475	0.176082089451163	.	.	.	.
BRCA	CAediting_84898	chr1_109063992_-	1.95316295451011e-05	0.203646014750015	.	.	.	.
CESC	CAediting_84898	chr1_109063992_-	0.028783102063843	0.202214884988053	.	.	.	.
LUAD	CAediting_84898	chr1_109063992_-	0.000422425252673768	0.268988149348323	.	.	.	.
PRAD	CAediting_84898	chr1_109063992_-	.	.	.	.	0.011708995913341	0.257656582374049
HNSC	CAediting_84898	chr1_109063992_-	5.45397936833625e-08	0.361885959053135	.	.	.	.
THCA	CAediting_84898	chr1_109063992_-	0.0270866335465158	0.18817787672264	.	.	.	.
KIRC	CAediting_84898	chr1_109063992_-	0.0174890444608476	0.209749459245783	.	.	.	.
OV	CAediting_84898	chr1_109063992_-	0.00131443811808887	0.426130079442179	.	.	.	.
SKCM	CAediting_84898	chr1_109063992_-	0.0100685534755844	0.231248626720742	.	.	.	.
SARC	CAediting_84898	chr1_109063992_-	0.00309196786006233	0.378796784952821	.	.	.	.
TGCT	CAediting_84898	chr1_109063992_-	3.9520700969933e-07	0.512210852851352	.	.	.	.
BLCA	CAediting_84899	chr1_109063993_-	0.0346175738812807	0.217051111960518	.	.	.	.
LGG	CAediting_84899	chr1_109063993_-	5.44497668044957e-05	0.418671364751614	.	.	.	.
BRCA	CAediting_84899	chr1_109063993_-	7.55309678370545e-17	0.422533598104367	.	.	.	.
LIHC	CAediting_84899	chr1_109063993_-	0.00016668129897308	0.490445928598429	.	.	.	.
CESC	CAediting_84899	chr1_109063993_-	0.000106292792447547	0.403545362969339	.	.	.	.
LUAD	CAediting_84899	chr1_109063993_-	2.99952055096745e-06	0.37923313764139	.	.	.	.
LUSC	CAediting_84899	chr1_109063993_-	0.000923115596323971	0.35699802235253	.	.	.	.
HNSC	CAediting_84899	chr1_109063993_-	2.32558513411527e-07	0.387338545105898	.	.	.	.
KIRC	CAediting_84899	chr1_109063993_-	0.0177334803074247	0.259721629943018	.	.	.	.
OV	CAediting_84899	chr1_109063993_-	0.00226523645245136	0.366799335908788	.	.	0.00881569998217302	0.317621831686078
SKCM	CAediting_84899	chr1_109063993_-	0.039663314559927	0.243052990493394	.	.	.	.
SARC	CAediting_84899	chr1_109063993_-	1.95506943818284e-05	0.564499522701062	.	.	.	.
TGCT	CAediting_84899	chr1_109063993_-	2.59571016942532e-09	0.628669316202481	.	.	.	.
BRCA	CAediting_84905	chr1_109064033_-	0.00502034708929879	0.184022295545273	.	.	.	.
LUAD	CAediting_84905	chr1_109064033_-	0.00560621118916561	0.243524463703982	.	.	.	.
HNSC	CAediting_84905	chr1_109064033_-	0.000203875722542451	0.26632824897625	.	.	.	.
SKCM	CAediting_84905	chr1_109064033_-	0.00452067467180644	0.280326319862532	.	.	.	.
TGCT	CAediting_84905	chr1_109064033_-	0.0447617993171284	0.244200032210622	.	.	.	.
LGG	CAediting_84909	chr1_109064075_-	0.0356662320617039	0.179659085004409	.	.	.	.
BRCA	CAediting_84909	chr1_109064075_-	1.59450894497835e-11	0.345843663185938	.	.	.	.
CESC	CAediting_84909	chr1_109064075_-	0.000212915585086461	0.350680118658345	.	.	.	.
LUAD	CAediting_84909	chr1_109064075_-	4.59119247614281e-06	0.377615286477998	.	.	.	.
LUSC	CAediting_84909	chr1_109064075_-	0.00319450479392254	0.246645601394959	.	.	.	.
HNSC	CAediting_84909	chr1_109064075_-	3.71623805190812e-09	0.389330155489181	.	.	.	.
KIRC	CAediting_84909	chr1_109064075_-	0.000273530881335787	0.331853770127179	.	.	.	.
UCEC	CAediting_84909	chr1_109064075_-	0.00077698398864816	0.259129326758291	.	.	.	.
OV	CAediting_84909	chr1_109064075_-	0.0111093672777151	0.336934124570827	.	.	.	.
SKCM	CAediting_84909	chr1_109064075_-	2.2416224480418e-05	0.408371003305885	.	.	.	.
SARC	CAediting_84909	chr1_109064075_-	0.0014080744670301	0.399890137353459	.	.	.	.
TGCT	CAediting_84909	chr1_109064075_-	1.52302976647232e-05	0.425824653292843	.	.	.	.
BRCA	CAediting_84910	chr1_109064076_-	1.74774612483439e-10	0.426839215669631	.	.	.	.
CESC	CAediting_84910	chr1_109064076_-	0.00843775829091358	0.339917916262656	.	.	.	.
LUAD	CAediting_84910	chr1_109064076_-	0.025901043305981	0.241612653629281	.	.	.	.
HNSC	CAediting_84910	chr1_109064076_-	0.0284964597725076	0.204326408390268	.	.	.	.
KIRC	CAediting_84910	chr1_109064076_-	0.000974224778173288	0.452325598775782	.	.	.	.
SKCM	CAediting_84910	chr1_109064076_-	0.028780597877707	0.306359695998378	.	.	.	.
TGCT	CAediting_84910	chr1_109064076_-	0.0104059877814714	0.315734087470794	.	.	.	.
LGG	CAediting_84911	chr1_109064089_-	3.38152240117556e-05	0.353848640795775	.	.	.	.
BRCA	CAediting_84911	chr1_109064089_-	1.04376898905444e-21	0.468643355704823	0.00673780697686139	0.140259673081155	.	.
LIHC	CAediting_84911	chr1_109064089_-	9.0529477539531e-05	0.436467445490318	.	.	.	.
LUAD	CAediting_84911	chr1_109064089_-	1.73159643450958e-08	0.42025289182018	.	.	.	.
LUSC	CAediting_84911	chr1_109064089_-	6.51684292697998e-05	0.341612052212938	.	.	.	.
GBM	CAediting_84911	chr1_109064089_-	1.05070328853911e-05	0.539222434751634	.	.	.	.
HNSC	CAediting_84911	chr1_109064089_-	8.29647165036732e-07	0.336188920345497	0.0148752667545175	0.169896256149521	.	.
THCA	CAediting_84911	chr1_109064089_-	0.0203364829701257	0.24159352954217	.	.	.	.
KIRC	CAediting_84911	chr1_109064089_-	0.0264928404732685	0.17999069718172	.	.	.	.
UCEC	CAediting_84911	chr1_109064089_-	0.000123149030624326	0.307428856954533	0.0244053795845309	0.183128308557328	.	.
OV	CAediting_84911	chr1_109064089_-	0.00118719406020542	0.351890474769389	.	.	.	.
SKCM	CAediting_84911	chr1_109064089_-	0.00014091579486012	0.33791368832367	.	.	.	.
TGCT	CAediting_84911	chr1_109064089_-	4.35557962283871e-05	0.474480635153818	.	.	.	.
BLCA	CAediting_84912	chr1_109064096_-	.	.	0.0195638300900868	0.303233799511183	.	.
BRCA	CAediting_84912	chr1_109064096_-	0.000282263537845404	0.256006587085978	.	.	.	.
LIHC	CAediting_84912	chr1_109064096_-	0.00942000027090047	0.344058438419501	.	.	.	.
LUAD	CAediting_84912	chr1_109064096_-	0.0282664604965695	0.215171474503879	.	.	.	.
LUSC	CAediting_84912	chr1_109064096_-	0.00948675716018759	0.31707228428639	.	.	.	.
HNSC	CAediting_84912	chr1_109064096_-	0.00339383773295027	0.271016464130337	.	.	0.0383040620976339	0.19346084356961
UCEC	CAediting_84912	chr1_109064096_-	0.0126752359954234	0.307621026145722	.	.	.	.
BLCA	CAediting_84913	chr1_109064101_-	0.000631390649411388	0.257323114391447	.	.	.	.
LGG	CAediting_84913	chr1_109064101_-	0.00530057417977945	0.205314344771589	.	.	.	.
BRCA	CAediting_84913	chr1_109064101_-	7.69919379343747e-17	0.346426529556155	.	.	.	.
CESC	CAediting_84913	chr1_109064101_-	1.41796156778408e-05	0.315688661787516	.	.	0.0101566652445232	0.19010343570534
LUAD	CAediting_84913	chr1_109064101_-	4.12592918314544e-08	0.338980610700131	.	.	.	.
COAD	CAediting_84913	chr1_109064101_-	0.00349833713654234	0.295233006656849	.	.	.	.
LUSC	CAediting_84913	chr1_109064101_-	3.56018869688802e-05	0.276752501938956	.	.	.	.
GBM	CAediting_84913	chr1_109064101_-	0.000412889054405361	0.459806829643606	.	.	.	.
PRAD	CAediting_84913	chr1_109064101_-	0.00133893829187514	0.278421371903551	.	.	.	.
HNSC	CAediting_84913	chr1_109064101_-	7.29099343465928e-11	0.365758491190338	0.00508525162318382	0.161899761050903	.	.
KIRC	CAediting_84913	chr1_109064101_-	0.0149624545054913	0.196410216775197	.	.	.	.
UCEC	CAediting_84913	chr1_109064101_-	3.09811722651261e-05	0.301198104938601	.	.	.	.
SKCM	CAediting_84913	chr1_109064101_-	7.52579742081233e-08	0.381871374150012	.	.	.	.
SARC	CAediting_84913	chr1_109064101_-	0.0252790118161332	0.245507040082063	.	.	.	.
TGCT	CAediting_84913	chr1_109064101_-	0.000129969831879587	0.359972528419594	.	.	.	.

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Relation with cancer stages for TAF13

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_84910	chr1_109064076_-	0.00949108832883535	0.343737154938596
BRCA	pathologic_stage	CAediting_84813	chr1_109063171_-	0.0481687454429093	0.180023438095189
BRCA	pathologic_stage	CAediting_84854	chr1_109063610_-	0.000132415971282272	0.143552483895906
BRCA	pathologic_stage	CAediting_84880	chr1_109063723_-	0.00400972762446072	0.208928055453771
BRCA	pathologic_stage	CAediting_84894	chr1_109063932_-	0.0403860421262876	0.190632625734917
BRCA	pathologic_stage	CAediting_84909	chr1_109064075_-	0.00894669399199999	0.138950953921555
BRCA	pathologic_stage	CAediting_84910	chr1_109064076_-	0.0373659109068953	0.146588491067318
CESC	clinical_stage	CAediting_84899	chr1_109063993_-	0.0337676100946089	-0.227884212854434
ESCA	pathologic_stage	CAediting_84845	chr1_109063570_-	0.0112117554622117	0.27876188208818
HNSC	clinical_stage	CAediting_84817	chr1_109063181_-	0.0227076177469907	-0.221164315680194
HNSC	clinical_stage	CAediting_84880	chr1_109063723_-	0.0200155716392548	0.226748919072965
HNSC	pathologic_stage	CAediting_84854	chr1_109063610_-	0.049214706372817	0.118935993783499
HNSC	pathologic_stage	CAediting_84859	chr1_109063617_-	0.0358922109639815	0.273770580761398
HNSC	pathologic_stage	CAediting_84860	chr1_109063618_-	0.0245318957381332	0.165757134756108
HNSC	pathologic_stage	CAediting_84862	chr1_109063620_-	0.045810875956317	0.231355746190812
HNSC	pathologic_stage	CAediting_84880	chr1_109063723_-	0.002356367856832	0.296507906840867
HNSC	pathologic_stage	CAediting_84892	chr1_109063913_-	0.00795900010405525	0.244239264360189
KIRC	pathologic_stage	CAediting_84853	chr1_109063609_-	0.00208637999433849	0.169352359149443
KIRC	pathologic_stage	CAediting_84860	chr1_109063618_-	0.027361022688552	0.191347755153019
KIRP	pathologic_stage	CAediting_84854	chr1_109063610_-	0.0121544485398872	0.30936455352041
LIHC	pathologic_stage	CAediting_84899	chr1_109063993_-	0.0430647294791428	-0.290249955891496
LUAD	pathologic_stage	CAediting_84817	chr1_109063181_-	0.0451101960075646	0.242030629531555
LUSC	pathologic_stage	CAediting_84910	chr1_109064076_-	0.0455433468821005	-0.231633998356461
SKCM	pathologic_stage	CAediting_84852	chr1_109063606_-	0.015138035727604	-0.323124985134382
TGCT	pathologic_stage	CAediting_84892	chr1_109063913_-	0.0200275553983962	-0.324847447875814
THCA	pathologic_stage	CAediting_84853	chr1_109063609_-	0.025864034808331	0.138726794087747
UCEC	clinical_stage	CAediting_84838	chr1_109063539_-	0.0169915950140577	0.271325431902704
UCEC	clinical_stage	CAediting_84910	chr1_109064076_-	0.039425857023575	0.217546304645932
UCEC	clinical_stage	CAediting_84912	chr1_109064096_-	0.0273264979782536	0.27378177698043

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Relation with survival for TAF13

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
CESC	CAediting_84905	chr1_109064033_-	0.0077187179273065	0.0140303	1.81842e-05
LUAD	CAediting_84863	chr1_109063621_-	0.0118233657923729	0.0227856	70.3233
LUAD	CAediting_84912	chr1_109064096_-	0.00839155149736126	0.00312694	72.9755
COAD	CAediting_84913	chr1_109064101_-	0.0493111139926385	0.0169995	1943.07
LUSC	CAediting_84862	chr1_109063620_-	0.00355980586365623	0.0282276	2.9107e-07
HNSC	CAediting_84891	chr1_109063901_-	0.0298374851754827	0.0148379	5.25595
HNSC	CAediting_84892	chr1_109063913_-	0.048769314983496	0.00888319	6.46018
UCEC	CAediting_84911	chr1_109064089_-	2.74826048027865e-05	9.92503e-05	528.028
UCEC	CAediting_84913	chr1_109064101_-	0.014038362874499	0.00974347	189.239
ESCA	CAediting_84845	chr1_109063570_-	0.0164463057813783	0.00635136	4814.03
SARC	CAediting_84860	chr1_109063618_-	0.0123981067091158	0.0034013	173786000

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RelatedDrugs for TAF13

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TAF13

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
TAF13	C3711387	Autosomal Recessive Primary Microcephaly	1	ORPHANET
TAF13	C4479476	MENTAL RETARDATION, AUTOSOMAL RECESSIVE 60	1	CTD_human;GENOMICS_ENGLAND;UNIPROT

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene