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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SON (CAeditome ID:6651) |
Gene summary for SON |
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Gene information | Gene symbol | SON | Gene ID | 6651 |
Gene name | SON DNA and RNA binding protein | |
Synonyms | BASS1|C21orf50|DBP-5|NREBP|SON3|TOKIMS | |
Cytomap | 21q22.11 | |
Type of gene | protein-coding | |
Description | protein SONBax antagonist selected in Saccharomyces 1NRE-binding proteinSON DNA binding proteinnegative regulatory element-binding protein | |
Modification date | 20210518 | |
UniProtAcc | P18583 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
SON | GO:0003723 | Protein SON | 21504830 |
SON | GO:0006397 | Protein SON | 21504830 |
SON | GO:0043066 | Protein SON | 10509013 |
SON | GO:0048024 | Protein SON | 21504830 |
SON | GO:0016607 | Protein SON | 0000052 |
SON | GO:0016607 | Protein SON | 21504830 |
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RNA A-to-I events for SON |
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CAediting_1449332(33546524, +), CAediting_1449333(33546660, +), CAediting_1449334(33546767, +), CAediting_1449335(33547244, +), CAediting_1449336(33550495, +), CAediting_1449337(33550853, +), CAediting_1449338(33550861, +), CAediting_1449339(33550878, +), CAediting_1449340(33550950, +), CAediting_1449341(33550991, +), CAediting_1449342(33551001, +), CAediting_1449343(33551013, +), CAediting_1449344(33551439, +), CAediting_1449345(33551447, +), CAediting_1449346(33551529, +), CAediting_1449347(33551536, +), CAediting_1449348(33551806, +), CAediting_1449349(33551912, +), CAediting_1449350(33551926, +), CAediting_1449351(33556634, +), CAediting_1449352(33557388, +), |
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RNA editing positional annotations for SON using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1449336 | chr21_33550495_+ | nonsynonymous SNV | ENST00000300278.7 | c.A1264G | p.T422A | D | P | N |
CAediting_1449336 | chr21_33550495_+ | nonsynonymous SNV | ENST00000356577.7 | c.A1264G | p.T422A | D | P | N |
CAediting_1449336 | chr21_33550495_+ | nonsynonymous SNV | ENST00000381679.7 | c.A1264G | p.T422A | D | P | N |
CAediting_1449336 | chr21_33550495_+ | nonsynonymous SNV | ENST00000455528.4 | c.A1264G | p.T422A | D | P | N |
CAediting_1449337 | chr21_33550853_+ | nonsynonymous SNV | ENST00000300278.7 | c.A1622G | p.E541G | D | D | D |
CAediting_1449337 | chr21_33550853_+ | nonsynonymous SNV | ENST00000356577.7 | c.A1622G | p.E541G | D | D | D |
CAediting_1449337 | chr21_33550853_+ | nonsynonymous SNV | ENST00000381679.7 | c.A1622G | p.E541G | D | D | D |
CAediting_1449337 | chr21_33550853_+ | nonsynonymous SNV | ENST00000455528.4 | c.A1622G | p.E541G | D | D | D |
CAediting_1449338 | chr21_33550861_+ | nonsynonymous SNV | ENST00000300278.7 | c.A1630G | p.M544V | D | P | N |
CAediting_1449338 | chr21_33550861_+ | nonsynonymous SNV | ENST00000356577.7 | c.A1630G | p.M544V | D | P | N |
CAediting_1449338 | chr21_33550861_+ | nonsynonymous SNV | ENST00000381679.7 | c.A1630G | p.M544V | D | P | N |
CAediting_1449338 | chr21_33550861_+ | nonsynonymous SNV | ENST00000455528.4 | c.A1630G | p.M544V | D | P | N |
CAediting_1449341 | chr21_33550991_+ | nonsynonymous SNV | ENST00000300278.7 | c.A1760G | p.Q587R | D | D | N |
CAediting_1449341 | chr21_33550991_+ | nonsynonymous SNV | ENST00000356577.7 | c.A1760G | p.Q587R | D | D | N |
CAediting_1449341 | chr21_33550991_+ | nonsynonymous SNV | ENST00000381679.7 | c.A1760G | p.Q587R | D | D | N |
CAediting_1449341 | chr21_33550991_+ | nonsynonymous SNV | ENST00000455528.4 | c.A1760G | p.Q587R | D | D | N |
CAediting_1449348 | chr21_33551806_+ | nonsynonymous SNV | ENST00000300278.7 | c.A2575G | p.S859G | T | D | N |
CAediting_1449348 | chr21_33551806_+ | nonsynonymous SNV | ENST00000356577.7 | c.A2575G | p.S859G | T | D | N |
CAediting_1449348 | chr21_33551806_+ | nonsynonymous SNV | ENST00000381679.7 | c.A2575G | p.S859G | T | D | N |
CAediting_1449348 | chr21_33551806_+ | nonsynonymous SNV | ENST00000455528.4 | c.A2575G | p.S859G | T | D | N |
CAediting_1449349 | chr21_33551912_+ | nonsynonymous SNV | ENST00000300278.7 | c.A2681G | p.Q894R | D | P | N |
CAediting_1449349 | chr21_33551912_+ | nonsynonymous SNV | ENST00000356577.7 | c.A2681G | p.Q894R | D | P | N |
CAediting_1449349 | chr21_33551912_+ | nonsynonymous SNV | ENST00000381679.7 | c.A2681G | p.Q894R | D | P | N |
CAediting_1449349 | chr21_33551912_+ | nonsynonymous SNV | ENST00000455528.4 | c.A2681G | p.Q894R | D | P | N |
CAediting_1449350 | chr21_33551926_+ | nonsynonymous SNV | ENST00000300278.7 | c.A2695G | p.S899G | D | B | N |
CAediting_1449350 | chr21_33551926_+ | nonsynonymous SNV | ENST00000356577.7 | c.A2695G | p.S899G | D | B | N |
CAediting_1449350 | chr21_33551926_+ | nonsynonymous SNV | ENST00000381679.7 | c.A2695G | p.S899G | D | B | N |
CAediting_1449350 | chr21_33551926_+ | nonsynonymous SNV | ENST00000455528.4 | c.A2695G | p.S899G | D | B | N |
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CAeditome ID | Position | Variant type |
CAediting_1449332 | chr21_33546524_+ | ncRNA_exonic |
CAediting_1449333 | chr21_33546660_+ | ncRNA_exonic |
CAediting_1449334 | chr21_33546767_+ | ncRNA_intronic |
CAediting_1449335 | chr21_33547244_+ | intronic |
CAediting_1449336 | chr21_33550495_+ | exonic |
CAediting_1449337 | chr21_33550853_+ | exonic |
CAediting_1449338 | chr21_33550861_+ | exonic |
CAediting_1449339 | chr21_33550878_+ | exonic |
CAediting_1449340 | chr21_33550950_+ | exonic |
CAediting_1449341 | chr21_33550991_+ | exonic |
CAediting_1449342 | chr21_33551001_+ | exonic |
CAediting_1449343 | chr21_33551013_+ | exonic |
CAediting_1449344 | chr21_33551439_+ | exonic |
CAediting_1449345 | chr21_33551447_+ | exonic |
CAediting_1449346 | chr21_33551529_+ | exonic |
CAediting_1449347 | chr21_33551536_+ | exonic |
CAediting_1449348 | chr21_33551806_+ | exonic |
CAediting_1449349 | chr21_33551912_+ | exonic |
CAediting_1449350 | chr21_33551926_+ | exonic |
CAediting_1449351 | chr21_33556634_+ | intronic |
CAediting_1449352 | chr21_33557388_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1449332 | chr21_33546524_+ | SINE | Alu | AluSq2 |
CAediting_1449333 | chr21_33546660_+ | SINE | Alu | AluSq2 |
CAediting_1449334 | chr21_33546767_+ | SINE | Alu | AluSq2 |
CAediting_1449335 | chr21_33547244_+ | SINE | Alu | AluSq2 |
CAediting_1449351 | chr21_33556634_+ | SINE | Alu | AluSx3 |
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RNA A-to-I editing events in the alternative splicing sites for SON |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SON |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for SON |
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The effects of the RNA editing to the miRNA binding sites for SON |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000159140.16 | ENST00000300278 | hsa-miR-548aa | 33560259 | 33560265 | 7mer-m8 | 33560242 | 33560266 | 154 | -13.44 |
CAediting_117844 | chr1_162342605_+ | ENSG00000159140.16 | ENST00000455528 | hsa-miR-556-3p | 33573409 | 33573416 | 8mer-1a | 33573395 | 33573416 | 143 | -8.35 |
CAediting_77128 | chr1_85133844_+ | ENSG00000159140.16 | ENST00000381679 | hsa-miR-4423-3p | 33558996 | 33559002 | 7mer-m8 | 33558983 | 33559003 | 140 | -12.68 |
CAediting_524911 | chr7_5495852_- | ENSG00000159140.16 | ENST00000381679 | hsa-miR-589-3p | 33558865 | 33558871 | 7mer-m8 | 33558849 | 33558872 | 145 | -17.06 |
CAediting_524911 | chr7_5495852_- | ENSG00000159140.16 | ENST00000429093 | hsa-miR-589-3p | 33569698 | 33569703 | 6mer | 33569678 | 33569704 | 141 | -26.57 |
CAediting_117844 | chr1_162342605_+ | ENSG00000159140.16 | ENST00000457208 | hsa-miR-556-3p | 33573409 | 33573416 | 8mer-1a | 33573395 | 33573416 | 143 | -8.35 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1351755 | chr19_40282625_- | ENSG00000159140.16 | ENST00000381679 | hsa-miR-641 | 33558948 | 33558954 | 7mer-m8 | 33558932 | 33558955 | 142 | -14.91 |
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The effects of the RNA editing to the stability of the RNA structures for SON |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SON |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LGG | CAediting_1449343 | chr21_33551013_+ | . | . | 9.86937964303172e-06 | 0.214314755210781 | . | . |
BRCA | CAediting_1449343 | chr21_33551013_+ | 9.22944882957594e-06 | 0.182659201438471 | . | . | . | . |
LUSC | CAediting_1449343 | chr21_33551013_+ | 0.0137064380106952 | 0.19156533413457 | . | . | . | . |
PCPG | CAediting_1449343 | chr21_33551013_+ | 0.0157344998645573 | 0.230844591303587 | . | . | . | . |
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Relation with cancer stages for SON |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SON |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for SON |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SON |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
SON | C4310696 | Zhu-Tokita-Takenouchi-Kim syndrome | 4 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
SON | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
SON | C0036095 | Salivary Gland Neoplasms | 1 | CTD_human |
SON | C0220636 | Malignant neoplasm of salivary gland | 1 | CTD_human |