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Editing gene: SNX1 (CAeditome ID:6642)

Gene summary for SNX1

Gene summary

Gene information	Gene symbol	SNX1
	Gene ID	6642
	Gene name	sorting nexin 1
	Synonyms	HsT17379\|VPS5
	Cytomap	15q22.31
	Type of gene	protein-coding
	Description	sorting nexin-1sorting nexin 1A
	Modification date	20210518
	UniProtAcc	Q13596
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SNX1	GO:0005154	Sorting nexin-1	9819414
SNX1	GO:0005158	Sorting nexin-1	9819414
SNX1	GO:0035091	Sorting nexin-1	15498486
SNX1	GO:1990459	Sorting nexin-1	9819414
SNX1	GO:1990460	Sorting nexin-1	9819414
SNX1	GO:0072673	Sorting nexin-1	20604901
SNX1	GO:0005737	Sorting nexin-1	11279102
SNX1	GO:0005764	Sorting nexin-1	0000052
SNX1	GO:0005768	Sorting nexin-1	0000052
SNX1	GO:0010008	Sorting nexin-1	15673616
SNX1	GO:0010008	Sorting nexin-1	22431521
SNX1	GO:0016020	Sorting nexin-1	9819414
SNX1	GO:0031901	Sorting nexin-1	15498486
SNX1	GO:0031982	Sorting nexin-1	25468996
SNX1	GO:0043231	Sorting nexin-1	0000052
SNX1	GO:0030904	Sorting nexin-1	19619496
SNX1	GO:0032991	Sorting nexin-1	9819414

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RNA A-to-I events for SNX1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000028528.13

RNA A-to-I editing events in Cancer.

CAediting_1048642(64098052, +), CAediting_1048643(64098438, +), CAediting_1048644(64098439, +), CAediting_1048645(64098447, +), CAediting_1048646(64098455, +), CAediting_1048647(64098461, +), CAediting_1048648(64098465, +), CAediting_1048649(64098466, +), CAediting_1048650(64098487, +), CAediting_1048651(64098507, +), CAediting_1048652(64098514, +), CAediting_1048653(64098515, +), CAediting_1048654(64098517, +), CAediting_1048655(64098528, +), CAediting_1048656(64098534, +), CAediting_1048657(64098537, +), CAediting_1048658(64098541, +), CAediting_1048659(64098542, +), CAediting_1048660(64098543, +), CAediting_1048661(64098546, +), CAediting_1048662(64098554, +), CAediting_1048663(64098586, +), CAediting_1048664(64098598, +), CAediting_1048665(64098605, +), CAediting_1048666(64098610, +), CAediting_1048667(64098611, +), CAediting_1048668(64098618, +), CAediting_1048669(64098622, +), CAediting_1048670(64098631, +), CAediting_1048671(64098635, +), CAediting_1048672(64098640, +), CAediting_1048673(64099505, +), CAediting_1048674(64099531, +), CAediting_1048675(64099549, +), CAediting_1048676(64099554, +), CAediting_1048677(64099756, +), CAediting_1048678(64099773, +), CAediting_1048679(64099775, +), CAediting_1048680(64099781, +), CAediting_1048681(64099786, +), CAediting_1048682(64099895, +), CAediting_1048683(64099986, +), CAediting_1048684(64100324, +), CAediting_1048685(64100330, +), CAediting_1048686(64100347, +), CAediting_1048687(64100352, +), CAediting_1048688(64100355, +), CAediting_1048689(64100361, +), CAediting_1048690(64100414, +), CAediting_1048691(64100424, +), CAediting_1048692(64100435, +), CAediting_1048693(64100438, +), CAediting_1048694(64100439, +), CAediting_1048695(64100440, +), CAediting_1048696(64100441, +), CAediting_1048697(64100453, +), CAediting_1048698(64100471, +), CAediting_1048699(64100479, +), CAediting_1048700(64100480, +), CAediting_1048701(64100507, +), CAediting_1048702(64100550, +), CAediting_1048703(64100592, +), CAediting_1048704(64100593, +), CAediting_1048705(64100867, +), CAediting_1048706(64100873, +), CAediting_1048707(64100904, +), CAediting_1048708(64100905, +), CAediting_1048709(64100922, +), CAediting_1048710(64100985, +), CAediting_1048711(64101037, +), CAediting_1048712(64101064, +), CAediting_1048713(64101070, +), CAediting_1048714(64101844, +), CAediting_1048715(64101845, +), CAediting_1048716(64101868, +), CAediting_1048717(64101869, +), CAediting_1048718(64101871, +), CAediting_1048719(64101896, +), CAediting_1048720(64101920, +), CAediting_1048721(64101921, +), CAediting_1048722(64101922, +), CAediting_1048723(64101940, +), CAediting_1048724(64101981, +), CAediting_1048725(64102289, +), CAediting_1048726(64102295, +), CAediting_1048727(64102328, +), CAediting_1048728(64102343, +), CAediting_1048729(64102346, +), CAediting_1048730(64102347, +), CAediting_1048731(64102351, +), CAediting_1048732(64102358, +), CAediting_1048733(64102360, +), CAediting_1048734(64102380, +), CAediting_1048735(64102400, +), CAediting_1048736(64104347, +), CAediting_1048737(64104353, +), CAediting_1048738(64104611, +), CAediting_1048739(64104709, +), CAediting_1048740(64104723, +), CAediting_1048741(64104724, +), CAediting_1048742(64104764, +), CAediting_1048743(64104765, +), CAediting_1048744(64104794, +), CAediting_1048745(64104797, +), CAediting_1048746(64104800, +), CAediting_1048747(64104805, +), CAediting_1048748(64104806, +), CAediting_1048749(64104817, +), CAediting_1048750(64104830, +), CAediting_1048751(64104961, +), CAediting_1048752(64105048, +), CAediting_1048753(64105049, +), CAediting_1048754(64105074, +), CAediting_1048755(64105075, +), CAediting_1048756(64105114, +), CAediting_1048757(64105115, +), CAediting_1048758(64105128, +), CAediting_1048759(64105137, +), CAediting_1048760(64105141, +), CAediting_1048761(64105164, +), CAediting_1048762(64108732, +), CAediting_1048763(64108733, +), CAediting_1048764(64108773, +), CAediting_1048765(64108867, +), CAediting_1048766(64108877, +), CAediting_1048767(64108894, +), CAediting_1048768(64108900, +), CAediting_1048769(64108908, +), CAediting_1048770(64108909, +), CAediting_1048771(64108914, +), CAediting_1048772(64108920, +), CAediting_1048773(64108963, +), CAediting_1048774(64109115, +), CAediting_1048775(64109116, +), CAediting_1048776(64109121, +), CAediting_1048777(64109124, +), CAediting_1048778(64109137, +), CAediting_1048779(64109170, +), CAediting_1048780(64109175, +), CAediting_1048781(64109185, +), CAediting_1048782(64109187, +), CAediting_1048783(64109193, +), CAediting_1048784(64109194, +), CAediting_1048785(64109195, +), CAediting_1048786(64109206, +), CAediting_1048787(64109209, +), CAediting_1048788(64109210, +), CAediting_1048789(64109211, +), CAediting_1048790(64109213, +), CAediting_1048791(64109219, +), CAediting_1048792(64109226, +), CAediting_1048793(64109242, +), CAediting_1048794(64109252, +), CAediting_1048795(64109258, +), CAediting_1048796(64109262, +), CAediting_1048797(64109275, +), CAediting_1048798(64109292, +), CAediting_1048799(64109293, +), CAediting_1048800(64109302, +), CAediting_1048801(64109625, +), CAediting_1048802(64109634, +), CAediting_1048803(64109637, +), CAediting_1048804(64109647, +), CAediting_1048805(64109649, +), CAediting_1048806(64109798, +), CAediting_1048807(64109812, +), CAediting_1048808(64110464, +), CAediting_1048809(64110471, +), CAediting_1048810(64110514, +), CAediting_1048811(64110685, +), CAediting_1048812(64113638, +), CAediting_1048813(64113740, +), CAediting_1048814(64113741, +), CAediting_1048815(64113742, +), CAediting_1048816(64113756, +), CAediting_1048817(64119136, +), CAediting_1048818(64119150, +), CAediting_1048819(64119165, +), CAediting_1048820(64119177, +), CAediting_1048821(64119218, +), CAediting_1048822(64119222, +), CAediting_1048823(64119273, +), CAediting_1048824(64119304, +), CAediting_1048825(64119307, +), CAediting_1048826(64119383, +), CAediting_1048827(64119480, +), CAediting_1048828(64119496, +), CAediting_1048829(64119497, +), CAediting_1048830(64119603, +), CAediting_1048831(64119604, +), CAediting_1048832(64119617, +), CAediting_1048833(64119644, +), CAediting_1048834(64119645, +), CAediting_1048835(64119665, +), CAediting_1048836(64119669, +), CAediting_1048837(64119679, +), CAediting_1048838(64119684, +), CAediting_1048839(64120689, +), CAediting_1048840(64120694, +), CAediting_1048841(64120696, +), CAediting_1048842(64120761, +), CAediting_1048843(64120769, +), CAediting_1048844(64120774, +), CAediting_1048845(64120820, +), CAediting_1048846(64124282, +), CAediting_1048847(64124360, +), CAediting_1048848(64124368, +), CAediting_1048849(64125372, +), CAediting_1048850(64125377, +), CAediting_1048851(64125386, +), CAediting_1048852(64125511, +), CAediting_1048853(64125564, +), CAediting_1048854(64125589, +), CAediting_1048855(64131081, +), CAediting_1048856(64131129, +), CAediting_1048857(64131157, +), CAediting_1048858(64133501, +), CAediting_1048859(64133503, +), CAediting_1048860(64133565, +), CAediting_1048861(64134335, +), CAediting_1048862(64135059, +), CAediting_1048863(64135547, +), CAediting_1048864(64135625, +), CAediting_1048865(64135652, +), CAediting_1048866(64135692, +), CAediting_1048867(64135709, +), CAediting_1048868(64135714, +), CAediting_1048869(64135801, +), CAediting_1048870(64135843, +), CAediting_1048871(64135871, +), CAediting_1048872(64135879, +), CAediting_1048873(64140602, +), CAediting_1048874(64140604, +), CAediting_1048875(64140606, +), CAediting_1048876(64140608, +), CAediting_1048877(64140627, +), CAediting_1048878(64140634, +), CAediting_1048879(64140639, +), CAediting_1048880(64140645, +), CAediting_1048881(64140647, +), CAediting_1048882(64140648, +), CAediting_1048883(64140653, +), CAediting_1048884(64140658, +), CAediting_1048885(64140664, +), CAediting_1048886(64140670, +), CAediting_1048887(64140684, +), CAediting_1048888(64140687, +), CAediting_1048889(64140701, +), CAediting_1048890(64140710, +), CAediting_1048891(64140723, +), CAediting_1048892(64140725, +), CAediting_1048893(64140741, +), CAediting_1048894(64140745, +), CAediting_1048895(64140749, +), CAediting_1048896(64140750, +), CAediting_1048897(64140758, +), CAediting_1048898(64140767, +), CAediting_1048899(64140769, +), CAediting_1048900(64140770, +), CAediting_1048901(64140785, +), CAediting_1048902(64140807, +), CAediting_1048903(64140814, +), CAediting_1048904(64140819, +), CAediting_1048905(64140824, +), CAediting_1048906(64140837, +), CAediting_1048907(64140846, +), CAediting_1048908(64140847, +), CAediting_1048909(64140877, +), CAediting_1048910(64140881, +), CAediting_1048911(64142061, +), CAediting_1048912(64142067, +), CAediting_1048913(64142083, +), CAediting_1048914(64142119, +), CAediting_1048915(64142124, +), CAediting_1048916(64142130, +), CAediting_1048917(64142132, +), CAediting_1048918(64142133, +), CAediting_1048919(64142161, +), CAediting_1048920(64142174, +), CAediting_1048921(64142176, +), CAediting_1048922(64142178, +), CAediting_1048923(64142179, +), CAediting_1048924(64142180, +), CAediting_1048925(64142182, +), CAediting_1048926(64142192, +), CAediting_1048927(64142220, +), CAediting_1048928(64142230, +), CAediting_1048929(64142238, +), CAediting_1048930(64142240, +), CAediting_1048931(64142243, +), CAediting_1048932(64142248, +), CAediting_1048933(64142253, +), CAediting_1048934(64142256, +), CAediting_1048935(64142269, +), CAediting_1048936(64142273, +), CAediting_1048937(64142310, +), CAediting_1048938(64142315, +), CAediting_1048939(64142316, +),

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RNA editing positional annotations for SNX1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1048642	chr15_64098052_+	intronic
CAediting_1048643	chr15_64098438_+	intronic
CAediting_1048644	chr15_64098439_+	intronic
CAediting_1048645	chr15_64098447_+	intronic
CAediting_1048646	chr15_64098455_+	intronic
CAediting_1048647	chr15_64098461_+	intronic
CAediting_1048648	chr15_64098465_+	intronic
CAediting_1048649	chr15_64098466_+	intronic
CAediting_1048650	chr15_64098487_+	intronic
CAediting_1048651	chr15_64098507_+	intronic
CAediting_1048652	chr15_64098514_+	intronic
CAediting_1048653	chr15_64098515_+	intronic
CAediting_1048654	chr15_64098517_+	intronic
CAediting_1048655	chr15_64098528_+	intronic
CAediting_1048656	chr15_64098534_+	intronic
CAediting_1048657	chr15_64098537_+	intronic
CAediting_1048658	chr15_64098541_+	intronic
CAediting_1048659	chr15_64098542_+	intronic
CAediting_1048660	chr15_64098543_+	intronic
CAediting_1048661	chr15_64098546_+	intronic
CAediting_1048662	chr15_64098554_+	intronic
CAediting_1048663	chr15_64098586_+	intronic
CAediting_1048664	chr15_64098598_+	intronic
CAediting_1048665	chr15_64098605_+	intronic
CAediting_1048666	chr15_64098610_+	intronic
CAediting_1048667	chr15_64098611_+	intronic
CAediting_1048668	chr15_64098618_+	intronic
CAediting_1048669	chr15_64098622_+	intronic
CAediting_1048670	chr15_64098631_+	intronic
CAediting_1048671	chr15_64098635_+	intronic
CAediting_1048672	chr15_64098640_+	intronic
CAediting_1048673	chr15_64099505_+	intronic
CAediting_1048674	chr15_64099531_+	intronic
CAediting_1048675	chr15_64099549_+	intronic
CAediting_1048676	chr15_64099554_+	intronic
CAediting_1048677	chr15_64099756_+	intronic
CAediting_1048678	chr15_64099773_+	intronic
CAediting_1048679	chr15_64099775_+	intronic
CAediting_1048680	chr15_64099781_+	intronic
CAediting_1048681	chr15_64099786_+	intronic
CAediting_1048682	chr15_64099895_+	intronic
CAediting_1048683	chr15_64099986_+	intronic
CAediting_1048684	chr15_64100324_+	intronic
CAediting_1048685	chr15_64100330_+	intronic
CAediting_1048686	chr15_64100347_+	intronic
CAediting_1048687	chr15_64100352_+	intronic
CAediting_1048688	chr15_64100355_+	intronic
CAediting_1048689	chr15_64100361_+	intronic
CAediting_1048690	chr15_64100414_+	intronic
CAediting_1048691	chr15_64100424_+	intronic
CAediting_1048692	chr15_64100435_+	intronic
CAediting_1048693	chr15_64100438_+	intronic
CAediting_1048694	chr15_64100439_+	intronic
CAediting_1048695	chr15_64100440_+	intronic
CAediting_1048696	chr15_64100441_+	intronic
CAediting_1048697	chr15_64100453_+	intronic
CAediting_1048698	chr15_64100471_+	intronic
CAediting_1048699	chr15_64100479_+	intronic
CAediting_1048700	chr15_64100480_+	intronic
CAediting_1048701	chr15_64100507_+	intronic
CAediting_1048702	chr15_64100550_+	intronic
CAediting_1048703	chr15_64100592_+	intronic
CAediting_1048704	chr15_64100593_+	intronic
CAediting_1048705	chr15_64100867_+	intronic
CAediting_1048706	chr15_64100873_+	intronic
CAediting_1048707	chr15_64100904_+	intronic
CAediting_1048708	chr15_64100905_+	intronic
CAediting_1048709	chr15_64100922_+	intronic
CAediting_1048710	chr15_64100985_+	intronic
CAediting_1048711	chr15_64101037_+	intronic
CAediting_1048712	chr15_64101064_+	intronic
CAediting_1048713	chr15_64101070_+	intronic
CAediting_1048714	chr15_64101844_+	intronic
CAediting_1048715	chr15_64101845_+	intronic
CAediting_1048716	chr15_64101868_+	intronic
CAediting_1048717	chr15_64101869_+	intronic
CAediting_1048718	chr15_64101871_+	intronic
CAediting_1048719	chr15_64101896_+	intronic
CAediting_1048720	chr15_64101920_+	intronic
CAediting_1048721	chr15_64101921_+	intronic
CAediting_1048722	chr15_64101922_+	intronic
CAediting_1048723	chr15_64101940_+	intronic
CAediting_1048724	chr15_64101981_+	intronic
CAediting_1048725	chr15_64102289_+	intronic
CAediting_1048726	chr15_64102295_+	intronic
CAediting_1048727	chr15_64102328_+	intronic
CAediting_1048728	chr15_64102343_+	intronic
CAediting_1048729	chr15_64102346_+	intronic
CAediting_1048730	chr15_64102347_+	intronic
CAediting_1048731	chr15_64102351_+	intronic
CAediting_1048732	chr15_64102358_+	intronic
CAediting_1048733	chr15_64102360_+	intronic
CAediting_1048734	chr15_64102380_+	intronic
CAediting_1048735	chr15_64102400_+	intronic
CAediting_1048736	chr15_64104347_+	intronic
CAediting_1048737	chr15_64104353_+	intronic
CAediting_1048738	chr15_64104611_+	intronic
CAediting_1048739	chr15_64104709_+	intronic
CAediting_1048740	chr15_64104723_+	intronic
CAediting_1048741	chr15_64104724_+	intronic
CAediting_1048742	chr15_64104764_+	intronic
CAediting_1048743	chr15_64104765_+	intronic
CAediting_1048744	chr15_64104794_+	intronic
CAediting_1048745	chr15_64104797_+	intronic
CAediting_1048746	chr15_64104800_+	intronic
CAediting_1048747	chr15_64104805_+	intronic
CAediting_1048748	chr15_64104806_+	intronic
CAediting_1048749	chr15_64104817_+	intronic
CAediting_1048750	chr15_64104830_+	intronic
CAediting_1048751	chr15_64104961_+	intronic
CAediting_1048752	chr15_64105048_+	intronic
CAediting_1048753	chr15_64105049_+	intronic
CAediting_1048754	chr15_64105074_+	intronic
CAediting_1048755	chr15_64105075_+	intronic
CAediting_1048756	chr15_64105114_+	intronic
CAediting_1048757	chr15_64105115_+	intronic
CAediting_1048758	chr15_64105128_+	intronic
CAediting_1048759	chr15_64105137_+	intronic
CAediting_1048760	chr15_64105141_+	intronic
CAediting_1048761	chr15_64105164_+	intronic
CAediting_1048762	chr15_64108732_+	intronic
CAediting_1048763	chr15_64108733_+	intronic
CAediting_1048764	chr15_64108773_+	intronic
CAediting_1048765	chr15_64108867_+	intronic
CAediting_1048766	chr15_64108877_+	intronic
CAediting_1048767	chr15_64108894_+	intronic
CAediting_1048768	chr15_64108900_+	intronic
CAediting_1048769	chr15_64108908_+	intronic
CAediting_1048770	chr15_64108909_+	intronic
CAediting_1048771	chr15_64108914_+	intronic
CAediting_1048772	chr15_64108920_+	intronic
CAediting_1048773	chr15_64108963_+	intronic
CAediting_1048774	chr15_64109115_+	intronic
CAediting_1048775	chr15_64109116_+	intronic
CAediting_1048776	chr15_64109121_+	intronic
CAediting_1048777	chr15_64109124_+	intronic
CAediting_1048778	chr15_64109137_+	intronic
CAediting_1048779	chr15_64109170_+	intronic
CAediting_1048780	chr15_64109175_+	intronic
CAediting_1048781	chr15_64109185_+	intronic
CAediting_1048782	chr15_64109187_+	intronic
CAediting_1048783	chr15_64109193_+	intronic
CAediting_1048784	chr15_64109194_+	intronic
CAediting_1048785	chr15_64109195_+	intronic
CAediting_1048786	chr15_64109206_+	intronic
CAediting_1048787	chr15_64109209_+	intronic
CAediting_1048788	chr15_64109210_+	intronic
CAediting_1048789	chr15_64109211_+	intronic
CAediting_1048790	chr15_64109213_+	intronic
CAediting_1048791	chr15_64109219_+	intronic
CAediting_1048792	chr15_64109226_+	intronic
CAediting_1048793	chr15_64109242_+	intronic
CAediting_1048794	chr15_64109252_+	intronic
CAediting_1048795	chr15_64109258_+	intronic
CAediting_1048796	chr15_64109262_+	intronic
CAediting_1048797	chr15_64109275_+	intronic
CAediting_1048798	chr15_64109292_+	intronic
CAediting_1048799	chr15_64109293_+	intronic
CAediting_1048800	chr15_64109302_+	intronic
CAediting_1048801	chr15_64109625_+	intronic
CAediting_1048802	chr15_64109634_+	intronic
CAediting_1048803	chr15_64109637_+	intronic
CAediting_1048804	chr15_64109647_+	intronic
CAediting_1048805	chr15_64109649_+	intronic
CAediting_1048806	chr15_64109798_+	intronic
CAediting_1048807	chr15_64109812_+	intronic
CAediting_1048808	chr15_64110464_+	intronic
CAediting_1048809	chr15_64110471_+	intronic
CAediting_1048810	chr15_64110514_+	intronic
CAediting_1048811	chr15_64110685_+	intronic
CAediting_1048812	chr15_64113638_+	intronic
CAediting_1048813	chr15_64113740_+	intronic
CAediting_1048814	chr15_64113741_+	intronic
CAediting_1048815	chr15_64113742_+	intronic
CAediting_1048816	chr15_64113756_+	intronic
CAediting_1048817	chr15_64119136_+	intronic
CAediting_1048818	chr15_64119150_+	intronic
CAediting_1048819	chr15_64119165_+	intronic
CAediting_1048820	chr15_64119177_+	intronic
CAediting_1048821	chr15_64119218_+	intronic
CAediting_1048822	chr15_64119222_+	intronic
CAediting_1048823	chr15_64119273_+	intronic
CAediting_1048824	chr15_64119304_+	intronic
CAediting_1048825	chr15_64119307_+	intronic
CAediting_1048826	chr15_64119383_+	intronic
CAediting_1048827	chr15_64119480_+	intronic
CAediting_1048828	chr15_64119496_+	intronic
CAediting_1048829	chr15_64119497_+	intronic
CAediting_1048830	chr15_64119603_+	intronic
CAediting_1048831	chr15_64119604_+	intronic
CAediting_1048832	chr15_64119617_+	intronic
CAediting_1048833	chr15_64119644_+	intronic
CAediting_1048834	chr15_64119645_+	intronic
CAediting_1048835	chr15_64119665_+	intronic
CAediting_1048836	chr15_64119669_+	intronic
CAediting_1048837	chr15_64119679_+	intronic
CAediting_1048838	chr15_64119684_+	intronic
CAediting_1048839	chr15_64120689_+	intronic
CAediting_1048840	chr15_64120694_+	intronic
CAediting_1048841	chr15_64120696_+	intronic
CAediting_1048842	chr15_64120761_+	intronic
CAediting_1048843	chr15_64120769_+	intronic
CAediting_1048844	chr15_64120774_+	intronic
CAediting_1048845	chr15_64120820_+	intronic
CAediting_1048846	chr15_64124282_+	intronic
CAediting_1048847	chr15_64124360_+	intronic
CAediting_1048848	chr15_64124368_+	intronic
CAediting_1048849	chr15_64125372_+	intronic
CAediting_1048850	chr15_64125377_+	intronic
CAediting_1048851	chr15_64125386_+	intronic
CAediting_1048852	chr15_64125511_+	intronic
CAediting_1048853	chr15_64125564_+	intronic
CAediting_1048854	chr15_64125589_+	intronic
CAediting_1048855	chr15_64131081_+	intronic
CAediting_1048856	chr15_64131129_+	intronic
CAediting_1048857	chr15_64131157_+	intronic
CAediting_1048858	chr15_64133501_+	ncRNA_intronic
CAediting_1048859	chr15_64133503_+	ncRNA_intronic
CAediting_1048860	chr15_64133565_+	ncRNA_intronic
CAediting_1048861	chr15_64134335_+	ncRNA_exonic
CAediting_1048862	chr15_64135059_+	ncRNA_intronic
CAediting_1048863	chr15_64135547_+	ncRNA_intronic
CAediting_1048864	chr15_64135625_+	ncRNA_intronic
CAediting_1048865	chr15_64135652_+	ncRNA_intronic
CAediting_1048866	chr15_64135692_+	ncRNA_intronic
CAediting_1048867	chr15_64135709_+	ncRNA_intronic
CAediting_1048868	chr15_64135714_+	ncRNA_intronic
CAediting_1048869	chr15_64135801_+	ncRNA_intronic
CAediting_1048870	chr15_64135843_+	ncRNA_intronic
CAediting_1048871	chr15_64135871_+	ncRNA_intronic
CAediting_1048872	chr15_64135879_+	ncRNA_intronic
CAediting_1048873	chr15_64140602_+	UTR3
CAediting_1048874	chr15_64140604_+	UTR3
CAediting_1048875	chr15_64140606_+	UTR3
CAediting_1048876	chr15_64140608_+	UTR3
CAediting_1048877	chr15_64140627_+	UTR3
CAediting_1048878	chr15_64140634_+	UTR3
CAediting_1048879	chr15_64140639_+	UTR3
CAediting_1048880	chr15_64140645_+	UTR3
CAediting_1048881	chr15_64140647_+	UTR3
CAediting_1048882	chr15_64140648_+	UTR3
CAediting_1048883	chr15_64140653_+	UTR3
CAediting_1048884	chr15_64140658_+	UTR3
CAediting_1048885	chr15_64140664_+	UTR3
CAediting_1048886	chr15_64140670_+	UTR3
CAediting_1048887	chr15_64140684_+	UTR3
CAediting_1048888	chr15_64140687_+	UTR3
CAediting_1048889	chr15_64140701_+	UTR3
CAediting_1048890	chr15_64140710_+	UTR3
CAediting_1048891	chr15_64140723_+	UTR3
CAediting_1048892	chr15_64140725_+	UTR3
CAediting_1048893	chr15_64140741_+	UTR3
CAediting_1048894	chr15_64140745_+	UTR3
CAediting_1048895	chr15_64140749_+	UTR3
CAediting_1048896	chr15_64140750_+	UTR3
CAediting_1048897	chr15_64140758_+	UTR3
CAediting_1048898	chr15_64140767_+	UTR3
CAediting_1048899	chr15_64140769_+	UTR3
CAediting_1048900	chr15_64140770_+	UTR3
CAediting_1048901	chr15_64140785_+	UTR3
CAediting_1048902	chr15_64140807_+	UTR3
CAediting_1048903	chr15_64140814_+	UTR3
CAediting_1048904	chr15_64140819_+	UTR3
CAediting_1048905	chr15_64140824_+	UTR3
CAediting_1048906	chr15_64140837_+	UTR3
CAediting_1048907	chr15_64140846_+	UTR3
CAediting_1048908	chr15_64140847_+	UTR3
CAediting_1048909	chr15_64140877_+	UTR3
CAediting_1048910	chr15_64140881_+	UTR3
CAediting_1048911	chr15_64142061_+	UTR3
CAediting_1048912	chr15_64142067_+	UTR3
CAediting_1048913	chr15_64142083_+	UTR3
CAediting_1048914	chr15_64142119_+	UTR3
CAediting_1048915	chr15_64142124_+	UTR3
CAediting_1048916	chr15_64142130_+	UTR3
CAediting_1048917	chr15_64142132_+	UTR3
CAediting_1048918	chr15_64142133_+	UTR3
CAediting_1048919	chr15_64142161_+	UTR3
CAediting_1048920	chr15_64142174_+	UTR3
CAediting_1048921	chr15_64142176_+	UTR3
CAediting_1048922	chr15_64142178_+	UTR3
CAediting_1048923	chr15_64142179_+	UTR3
CAediting_1048924	chr15_64142180_+	UTR3
CAediting_1048925	chr15_64142182_+	UTR3
CAediting_1048926	chr15_64142192_+	UTR3
CAediting_1048927	chr15_64142220_+	UTR3
CAediting_1048928	chr15_64142230_+	UTR3
CAediting_1048929	chr15_64142238_+	UTR3
CAediting_1048930	chr15_64142240_+	UTR3
CAediting_1048931	chr15_64142243_+	UTR3
CAediting_1048932	chr15_64142248_+	UTR3
CAediting_1048933	chr15_64142253_+	UTR3
CAediting_1048934	chr15_64142256_+	UTR3
CAediting_1048935	chr15_64142269_+	UTR3
CAediting_1048936	chr15_64142273_+	UTR3
CAediting_1048937	chr15_64142310_+	UTR3
CAediting_1048938	chr15_64142315_+	UTR3
CAediting_1048939	chr15_64142316_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1048642	chr15_64098052_+	SINE	Alu	FLAM_A
CAediting_1048643	chr15_64098438_+	SINE	Alu	AluSz6
CAediting_1048644	chr15_64098439_+	SINE	Alu	AluSz6
CAediting_1048645	chr15_64098447_+	SINE	Alu	AluSz6
CAediting_1048646	chr15_64098455_+	SINE	Alu	AluSz6
CAediting_1048647	chr15_64098461_+	SINE	Alu	AluSz6
CAediting_1048648	chr15_64098465_+	SINE	Alu	AluSz6
CAediting_1048649	chr15_64098466_+	SINE	Alu	AluSz6
CAediting_1048650	chr15_64098487_+	SINE	Alu	AluSz6
CAediting_1048651	chr15_64098507_+	SINE	Alu	AluSz6
CAediting_1048652	chr15_64098514_+	SINE	Alu	AluSz6
CAediting_1048653	chr15_64098515_+	SINE	Alu	AluSz6
CAediting_1048654	chr15_64098517_+	SINE	Alu	AluSz6
CAediting_1048655	chr15_64098528_+	SINE	Alu	AluSz6
CAediting_1048656	chr15_64098534_+	SINE	Alu	AluSz6
CAediting_1048657	chr15_64098537_+	SINE	Alu	AluSz6
CAediting_1048658	chr15_64098541_+	SINE	Alu	AluSz6
CAediting_1048659	chr15_64098542_+	SINE	Alu	AluSz6
CAediting_1048660	chr15_64098543_+	SINE	Alu	AluSz6
CAediting_1048661	chr15_64098546_+	SINE	Alu	AluSz6
CAediting_1048662	chr15_64098554_+	SINE	Alu	AluSz6
CAediting_1048663	chr15_64098586_+	SINE	Alu	AluSz6
CAediting_1048664	chr15_64098598_+	SINE	Alu	AluSz6
CAediting_1048665	chr15_64098605_+	SINE	Alu	AluSz6
CAediting_1048666	chr15_64098610_+	SINE	Alu	AluSz6
CAediting_1048667	chr15_64098611_+	SINE	Alu	AluSz6
CAediting_1048668	chr15_64098618_+	SINE	Alu	AluSz6
CAediting_1048669	chr15_64098622_+	SINE	Alu	AluSz6
CAediting_1048670	chr15_64098631_+	SINE	Alu	AluSz6
CAediting_1048671	chr15_64098635_+	SINE	Alu	AluSz6
CAediting_1048672	chr15_64098640_+	SINE	Alu	AluSz6
CAediting_1048673	chr15_64099505_+	SINE	Alu	AluJr
CAediting_1048674	chr15_64099531_+	SINE	Alu	AluJr
CAediting_1048675	chr15_64099549_+	SINE	Alu	AluJr
CAediting_1048676	chr15_64099554_+	SINE	Alu	AluJr
CAediting_1048677	chr15_64099756_+	SINE	Alu	AluSz
CAediting_1048678	chr15_64099773_+	SINE	Alu	AluSz
CAediting_1048679	chr15_64099775_+	SINE	Alu	AluSz
CAediting_1048680	chr15_64099781_+	SINE	Alu	AluSz
CAediting_1048681	chr15_64099786_+	SINE	Alu	AluSz
CAediting_1048682	chr15_64099895_+	SINE	Alu	AluSz
CAediting_1048683	chr15_64099986_+	SINE	Alu	AluSz
CAediting_1048684	chr15_64100324_+	SINE	Alu	AluSg
CAediting_1048685	chr15_64100330_+	SINE	Alu	AluSg
CAediting_1048686	chr15_64100347_+	SINE	Alu	AluSg
CAediting_1048687	chr15_64100352_+	SINE	Alu	AluSg
CAediting_1048688	chr15_64100355_+	SINE	Alu	AluSg
CAediting_1048689	chr15_64100361_+	SINE	Alu	AluSg
CAediting_1048690	chr15_64100414_+	SINE	Alu	AluSg
CAediting_1048691	chr15_64100424_+	SINE	Alu	AluSg
CAediting_1048692	chr15_64100435_+	SINE	Alu	AluSg
CAediting_1048693	chr15_64100438_+	SINE	Alu	AluSg
CAediting_1048694	chr15_64100439_+	SINE	Alu	AluSg
CAediting_1048695	chr15_64100440_+	SINE	Alu	AluSg
CAediting_1048696	chr15_64100441_+	SINE	Alu	AluSg
CAediting_1048697	chr15_64100453_+	SINE	Alu	AluSg
CAediting_1048698	chr15_64100471_+	SINE	Alu	AluSg
CAediting_1048699	chr15_64100479_+	SINE	Alu	AluSg
CAediting_1048700	chr15_64100480_+	SINE	Alu	AluSg
CAediting_1048701	chr15_64100507_+	SINE	Alu	AluSg
CAediting_1048702	chr15_64100550_+	SINE	Alu	AluSg
CAediting_1048703	chr15_64100592_+	SINE	Alu	AluSg
CAediting_1048704	chr15_64100593_+	SINE	Alu	AluSg
CAediting_1048705	chr15_64100867_+	SINE	Alu	AluJo
CAediting_1048706	chr15_64100873_+	SINE	Alu	AluJo
CAediting_1048707	chr15_64100904_+	SINE	Alu	AluJo
CAediting_1048708	chr15_64100905_+	SINE	Alu	AluJo
CAediting_1048709	chr15_64100922_+	SINE	Alu	AluJo
CAediting_1048710	chr15_64100985_+	SINE	Alu	AluJo
CAediting_1048711	chr15_64101037_+	SINE	Alu	AluJo
CAediting_1048712	chr15_64101064_+	SINE	Alu	AluJo
CAediting_1048713	chr15_64101070_+	SINE	Alu	AluJo
CAediting_1048714	chr15_64101844_+	LINE	L1	L1MA5
CAediting_1048715	chr15_64101845_+	LINE	L1	L1MA5
CAediting_1048716	chr15_64101868_+	LINE	L1	L1MA5
CAediting_1048717	chr15_64101869_+	LINE	L1	L1MA5
CAediting_1048718	chr15_64101871_+	LINE	L1	L1MA5
CAediting_1048719	chr15_64101896_+	LINE	L1	L1MA5
CAediting_1048720	chr15_64101920_+	LINE	L1	L1MA5
CAediting_1048721	chr15_64101921_+	LINE	L1	L1MA5
CAediting_1048722	chr15_64101922_+	LINE	L1	L1MA5
CAediting_1048723	chr15_64101940_+	LINE	L1	L1MA5
CAediting_1048724	chr15_64101981_+	LINE	L1	L1MA5
CAediting_1048725	chr15_64102289_+	LINE	L1	L1MA4
CAediting_1048726	chr15_64102295_+	LINE	L1	L1MA4
CAediting_1048727	chr15_64102328_+	LINE	L1	L1MA4
CAediting_1048728	chr15_64102343_+	LINE	L1	L1MA4
CAediting_1048729	chr15_64102346_+	LINE	L1	L1MA4
CAediting_1048730	chr15_64102347_+	LINE	L1	L1MA4
CAediting_1048731	chr15_64102351_+	LINE	L1	L1MA4
CAediting_1048732	chr15_64102358_+	LINE	L1	L1MA4
CAediting_1048733	chr15_64102360_+	LINE	L1	L1MA4
CAediting_1048734	chr15_64102380_+	LINE	L1	L1MA4
CAediting_1048735	chr15_64102400_+	LINE	L1	L1MA4
CAediting_1048736	chr15_64104347_+	SINE	Alu	AluY
CAediting_1048737	chr15_64104353_+	SINE	Alu	AluY
CAediting_1048738	chr15_64104611_+	SINE	Alu	AluSx
CAediting_1048739	chr15_64104709_+	SINE	Alu	AluSx
CAediting_1048740	chr15_64104723_+	SINE	Alu	AluSx
CAediting_1048741	chr15_64104724_+	SINE	Alu	AluSx
CAediting_1048742	chr15_64104764_+	SINE	Alu	AluSx
CAediting_1048743	chr15_64104765_+	SINE	Alu	AluSx
CAediting_1048744	chr15_64104794_+	SINE	Alu	AluSx
CAediting_1048745	chr15_64104797_+	SINE	Alu	AluSx
CAediting_1048746	chr15_64104800_+	SINE	Alu	AluSx
CAediting_1048747	chr15_64104805_+	SINE	Alu	AluSx
CAediting_1048748	chr15_64104806_+	SINE	Alu	AluSx
CAediting_1048749	chr15_64104817_+	SINE	Alu	AluSx
CAediting_1048750	chr15_64104830_+	SINE	Alu	AluSx
CAediting_1048751	chr15_64104961_+	SINE	Alu	AluSx
CAediting_1048752	chr15_64105048_+	SINE	Alu	AluSx
CAediting_1048753	chr15_64105049_+	SINE	Alu	AluSx
CAediting_1048754	chr15_64105074_+	SINE	Alu	AluSx
CAediting_1048755	chr15_64105075_+	SINE	Alu	AluSx
CAediting_1048756	chr15_64105114_+	SINE	Alu	AluSx
CAediting_1048757	chr15_64105115_+	SINE	Alu	AluSx
CAediting_1048758	chr15_64105128_+	SINE	Alu	AluSx
CAediting_1048759	chr15_64105137_+	SINE	Alu	AluSx
CAediting_1048760	chr15_64105141_+	SINE	Alu	AluSx
CAediting_1048761	chr15_64105164_+	SINE	Alu	AluSx
CAediting_1048762	chr15_64108732_+	SINE	Alu	AluSx1
CAediting_1048763	chr15_64108733_+	SINE	Alu	AluSx1
CAediting_1048764	chr15_64108773_+	SINE	Alu	AluSx1
CAediting_1048765	chr15_64108867_+	SINE	Alu	AluSx1
CAediting_1048766	chr15_64108877_+	SINE	Alu	AluSx1
CAediting_1048767	chr15_64108894_+	SINE	Alu	AluSx1
CAediting_1048768	chr15_64108900_+	SINE	Alu	AluSx1
CAediting_1048769	chr15_64108908_+	SINE	Alu	AluSx1
CAediting_1048770	chr15_64108909_+	SINE	Alu	AluSx1
CAediting_1048771	chr15_64108914_+	SINE	Alu	AluSx1
CAediting_1048772	chr15_64108920_+	SINE	Alu	AluSx1
CAediting_1048773	chr15_64108963_+	SINE	Alu	AluSx1
CAediting_1048774	chr15_64109115_+	SINE	Alu	AluSz
CAediting_1048775	chr15_64109116_+	SINE	Alu	AluSz
CAediting_1048776	chr15_64109121_+	SINE	Alu	AluSz
CAediting_1048777	chr15_64109124_+	SINE	Alu	AluSz
CAediting_1048778	chr15_64109137_+	SINE	Alu	AluSz
CAediting_1048779	chr15_64109170_+	SINE	Alu	AluSz
CAediting_1048780	chr15_64109175_+	SINE	Alu	AluSz
CAediting_1048781	chr15_64109185_+	SINE	Alu	AluSz
CAediting_1048782	chr15_64109187_+	SINE	Alu	AluSz
CAediting_1048783	chr15_64109193_+	SINE	Alu	AluSz
CAediting_1048784	chr15_64109194_+	SINE	Alu	AluSz
CAediting_1048785	chr15_64109195_+	SINE	Alu	AluSz
CAediting_1048786	chr15_64109206_+	SINE	Alu	AluSz
CAediting_1048787	chr15_64109209_+	SINE	Alu	AluSz
CAediting_1048788	chr15_64109210_+	SINE	Alu	AluSz
CAediting_1048789	chr15_64109211_+	SINE	Alu	AluSz
CAediting_1048790	chr15_64109213_+	SINE	Alu	AluSz
CAediting_1048791	chr15_64109219_+	SINE	Alu	AluSz
CAediting_1048792	chr15_64109226_+	SINE	Alu	AluSz
CAediting_1048793	chr15_64109242_+	SINE	Alu	AluSz
CAediting_1048794	chr15_64109252_+	SINE	Alu	AluSz
CAediting_1048795	chr15_64109258_+	SINE	Alu	AluSz
CAediting_1048796	chr15_64109262_+	SINE	Alu	AluSz
CAediting_1048797	chr15_64109275_+	SINE	Alu	AluSz
CAediting_1048798	chr15_64109292_+	SINE	Alu	AluSz
CAediting_1048799	chr15_64109293_+	SINE	Alu	AluSz
CAediting_1048800	chr15_64109302_+	SINE	Alu	AluSz
CAediting_1048801	chr15_64109625_+	SINE	Alu	AluSx1
CAediting_1048802	chr15_64109634_+	SINE	Alu	AluSx1
CAediting_1048803	chr15_64109637_+	SINE	Alu	AluSx1
CAediting_1048804	chr15_64109647_+	SINE	Alu	AluSx1
CAediting_1048805	chr15_64109649_+	SINE	Alu	AluSx1
CAediting_1048806	chr15_64109798_+	SINE	Alu	AluSx1
CAediting_1048807	chr15_64109812_+	SINE	Alu	AluSx1
CAediting_1048808	chr15_64110464_+	SINE	Alu	AluJr
CAediting_1048809	chr15_64110471_+	SINE	Alu	AluJr
CAediting_1048810	chr15_64110514_+	SINE	Alu	AluJr
CAediting_1048811	chr15_64110685_+	SINE	Alu	AluJr
CAediting_1048812	chr15_64113638_+	SINE	Alu	AluSz
CAediting_1048813	chr15_64113740_+	SINE	Alu	AluSz
CAediting_1048814	chr15_64113741_+	SINE	Alu	AluSz
CAediting_1048815	chr15_64113742_+	SINE	Alu	AluSz
CAediting_1048816	chr15_64113756_+	SINE	Alu	AluSz
CAediting_1048817	chr15_64119136_+	SINE	Alu	AluJr
CAediting_1048818	chr15_64119150_+	SINE	Alu	AluJr
CAediting_1048819	chr15_64119165_+	SINE	Alu	AluJr
CAediting_1048820	chr15_64119177_+	SINE	Alu	AluJr
CAediting_1048821	chr15_64119218_+	SINE	Alu	AluJr
CAediting_1048822	chr15_64119222_+	SINE	Alu	AluJr
CAediting_1048823	chr15_64119273_+	SINE	Alu	AluJr
CAediting_1048824	chr15_64119304_+	SINE	Alu	AluJr
CAediting_1048825	chr15_64119307_+	SINE	Alu	AluJr
CAediting_1048826	chr15_64119383_+	SINE	Alu	AluJr
CAediting_1048827	chr15_64119480_+	SINE	Alu	AluSz
CAediting_1048828	chr15_64119496_+	SINE	Alu	AluSz
CAediting_1048829	chr15_64119497_+	SINE	Alu	AluSz
CAediting_1048830	chr15_64119603_+	SINE	Alu	AluSz
CAediting_1048831	chr15_64119604_+	SINE	Alu	AluSz
CAediting_1048832	chr15_64119617_+	SINE	Alu	AluSz
CAediting_1048833	chr15_64119644_+	SINE	Alu	AluSz
CAediting_1048834	chr15_64119645_+	SINE	Alu	AluSz
CAediting_1048835	chr15_64119665_+	SINE	Alu	AluSz
CAediting_1048836	chr15_64119669_+	SINE	Alu	AluSz
CAediting_1048837	chr15_64119679_+	SINE	Alu	AluSz
CAediting_1048838	chr15_64119684_+	SINE	Alu	AluSz
CAediting_1048839	chr15_64120689_+	SINE	Alu	AluJb
CAediting_1048840	chr15_64120694_+	SINE	Alu	AluJb
CAediting_1048841	chr15_64120696_+	SINE	Alu	AluJb
CAediting_1048842	chr15_64120761_+	SINE	Alu	AluJb
CAediting_1048843	chr15_64120769_+	SINE	Alu	AluJb
CAediting_1048844	chr15_64120774_+	SINE	Alu	AluJb
CAediting_1048845	chr15_64120820_+	SINE	Alu	AluJb
CAediting_1048846	chr15_64124282_+	SINE	Alu	AluY
CAediting_1048847	chr15_64124360_+	SINE	Alu	AluY
CAediting_1048848	chr15_64124368_+	SINE	Alu	AluY
CAediting_1048849	chr15_64125372_+	SINE	Alu	AluSx1
CAediting_1048850	chr15_64125377_+	SINE	Alu	AluSx1
CAediting_1048851	chr15_64125386_+	SINE	Alu	AluSx1
CAediting_1048852	chr15_64125511_+	SINE	Alu	AluJr
CAediting_1048853	chr15_64125564_+	SINE	Alu	AluJr
CAediting_1048854	chr15_64125589_+	SINE	Alu	AluJr
CAediting_1048855	chr15_64131081_+	SINE	Alu	AluSg7
CAediting_1048856	chr15_64131129_+	SINE	Alu	AluSg7
CAediting_1048857	chr15_64131157_+	SINE	Alu	AluSg7
CAediting_1048858	chr15_64133501_+	SINE	Alu	AluSq2
CAediting_1048859	chr15_64133503_+	SINE	Alu	AluSq2
CAediting_1048860	chr15_64133565_+	SINE	Alu	AluSq2
CAediting_1048862	chr15_64135059_+	SINE	Alu	AluSx3
CAediting_1048863	chr15_64135547_+	SINE	Alu	AluSc
CAediting_1048864	chr15_64135625_+	SINE	Alu	AluSc
CAediting_1048865	chr15_64135652_+	SINE	Alu	AluSc
CAediting_1048866	chr15_64135692_+	SINE	Alu	AluSc
CAediting_1048867	chr15_64135709_+	SINE	Alu	AluSc
CAediting_1048868	chr15_64135714_+	SINE	Alu	AluSc
CAediting_1048869	chr15_64135801_+	SINE	Alu	AluSx3
CAediting_1048870	chr15_64135843_+	SINE	Alu	AluSx3
CAediting_1048871	chr15_64135871_+	SINE	Alu	AluSx3
CAediting_1048872	chr15_64135879_+	SINE	Alu	AluSx3
CAediting_1048873	chr15_64140602_+	SINE	Alu	AluSq2
CAediting_1048874	chr15_64140604_+	SINE	Alu	AluSq2
CAediting_1048875	chr15_64140606_+	SINE	Alu	AluSq2
CAediting_1048876	chr15_64140608_+	SINE	Alu	AluSq2
CAediting_1048877	chr15_64140627_+	SINE	Alu	AluSq2
CAediting_1048878	chr15_64140634_+	SINE	Alu	AluSq2
CAediting_1048879	chr15_64140639_+	SINE	Alu	AluSq2
CAediting_1048880	chr15_64140645_+	SINE	Alu	AluSq2
CAediting_1048881	chr15_64140647_+	SINE	Alu	AluSq2
CAediting_1048882	chr15_64140648_+	SINE	Alu	AluSq2
CAediting_1048883	chr15_64140653_+	SINE	Alu	AluSq2
CAediting_1048884	chr15_64140658_+	SINE	Alu	AluSq2
CAediting_1048885	chr15_64140664_+	SINE	Alu	AluSq2
CAediting_1048886	chr15_64140670_+	SINE	Alu	AluSq2
CAediting_1048887	chr15_64140684_+	SINE	Alu	AluSq2
CAediting_1048888	chr15_64140687_+	SINE	Alu	AluSq2
CAediting_1048889	chr15_64140701_+	SINE	Alu	AluSq2
CAediting_1048890	chr15_64140710_+	SINE	Alu	AluSq2
CAediting_1048891	chr15_64140723_+	SINE	Alu	AluSq2
CAediting_1048892	chr15_64140725_+	SINE	Alu	AluSq2
CAediting_1048893	chr15_64140741_+	SINE	Alu	AluSq2
CAediting_1048894	chr15_64140745_+	SINE	Alu	AluSq2
CAediting_1048895	chr15_64140749_+	SINE	Alu	AluSq2
CAediting_1048896	chr15_64140750_+	SINE	Alu	AluSq2
CAediting_1048897	chr15_64140758_+	SINE	Alu	AluSq2
CAediting_1048898	chr15_64140767_+	SINE	Alu	AluSq2
CAediting_1048899	chr15_64140769_+	SINE	Alu	AluSq2
CAediting_1048900	chr15_64140770_+	SINE	Alu	AluSq2
CAediting_1048901	chr15_64140785_+	SINE	Alu	AluSq2
CAediting_1048902	chr15_64140807_+	SINE	Alu	AluSq2
CAediting_1048903	chr15_64140814_+	SINE	Alu	AluSq2
CAediting_1048904	chr15_64140819_+	SINE	Alu	AluSq2
CAediting_1048905	chr15_64140824_+	SINE	Alu	AluSq2
CAediting_1048906	chr15_64140837_+	SINE	Alu	AluSq2
CAediting_1048907	chr15_64140846_+	SINE	Alu	AluSq2
CAediting_1048908	chr15_64140847_+	SINE	Alu	AluSq2
CAediting_1048909	chr15_64140877_+	SINE	Alu	AluSq2
CAediting_1048910	chr15_64140881_+	SINE	Alu	AluSq2
CAediting_1048911	chr15_64142061_+	SINE	Alu	AluJo
CAediting_1048912	chr15_64142067_+	SINE	Alu	AluJo
CAediting_1048913	chr15_64142083_+	SINE	Alu	AluJo
CAediting_1048914	chr15_64142119_+	SINE	Alu	AluJo
CAediting_1048915	chr15_64142124_+	SINE	Alu	AluJo
CAediting_1048916	chr15_64142130_+	SINE	Alu	AluJo
CAediting_1048917	chr15_64142132_+	SINE	Alu	AluJo
CAediting_1048918	chr15_64142133_+	SINE	Alu	AluJo
CAediting_1048919	chr15_64142161_+	SINE	Alu	AluJo
CAediting_1048920	chr15_64142174_+	SINE	Alu	AluJo
CAediting_1048921	chr15_64142176_+	SINE	Alu	AluJo
CAediting_1048922	chr15_64142178_+	SINE	Alu	AluJo
CAediting_1048923	chr15_64142179_+	SINE	Alu	AluJo
CAediting_1048924	chr15_64142180_+	SINE	Alu	AluJo
CAediting_1048925	chr15_64142182_+	SINE	Alu	AluJo
CAediting_1048926	chr15_64142192_+	SINE	Alu	AluJo
CAediting_1048927	chr15_64142220_+	SINE	Alu	AluJo
CAediting_1048928	chr15_64142230_+	SINE	Alu	AluJo
CAediting_1048929	chr15_64142238_+	SINE	Alu	AluJo
CAediting_1048930	chr15_64142240_+	SINE	Alu	AluJo
CAediting_1048931	chr15_64142243_+	SINE	Alu	AluJo
CAediting_1048932	chr15_64142248_+	SINE	Alu	AluJo
CAediting_1048933	chr15_64142253_+	SINE	Alu	AluJo
CAediting_1048934	chr15_64142256_+	SINE	Alu	AluJo
CAediting_1048935	chr15_64142269_+	SINE	Alu	AluJo
CAediting_1048936	chr15_64142273_+	SINE	Alu	AluJo
CAediting_1048937	chr15_64142310_+	SINE	Alu	AluJo
CAediting_1048938	chr15_64142315_+	SINE	Alu	AluJo
CAediting_1048939	chr15_64142316_+	SINE	Alu	AluJo

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RNA A-to-I editing events in the alternative splicing sites for SNX1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000028528.13.SNX1.

Correlation between RNA A-to-I editing and PSI for ENSG00000028528.13.SNX1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNX1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LGG.CAediting_1048904.ENSG00000028528.SNX1.png
Soverview

THYM.CAediting_1048880.ENSG00000028528.SNX1.png
Soverview

Top

Protein coding region RNA A-to-I editings for SNX1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for SNX1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1048875	chr15_64140606_+	ENSG00000028528.13	ENST00000380285	hsa-miR-340-3p	64140600	64140607	8mer-1a	64140585	64140607	147.00	-20.86
CAediting_1048875	chr15_64140606_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6827-3p	64140600	64140607	8mer-1a	64140587	64140607	140.00	-14.67
CAediting_1048887	chr15_64140684_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4539	64140678	64140683	6mer	64140665	64140684	140.00	-19.21
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4661-5p	64140744	64140750	7mer-m8	64140730	64140751	149.00	-17.51
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548ae-3p	64140748	64140754	7mer-m8	64140735	64140755	141.00	-10.48
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548ae-3p	64140748	64140754	7mer-m8	64140735	64140755	141.00	-10.48
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548ah-3p	64140748	64140754	7mer-m8	64140733	64140755	143.00	-10.48
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548aj-3p	64140748	64140754	7mer-m8	64140735	64140755	141.00	-8.37
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548aj-3p	64140748	64140754	7mer-m8	64140735	64140755	141.00	-8.37
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548am-3p	64140748	64140754	7mer-m8	64140733	64140755	143.00	-10.48
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548aq-3p	64140748	64140754	7mer-m8	64140734	64140755	141.00	-10.48
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548j-3p	64140748	64140754	7mer-m8	64140735	64140755	141.00	-10.48
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548x-3p	64140748	64140754	7mer-m8	64140736	64140755	141.00	-8.37
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548x-3p	64140748	64140754	7mer-m8	64140736	64140755	141.00	-8.37
CAediting_1048896	chr15_64140750_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7844-5p	64140746	64140752	7mer-m8	64140732	64140753	160.00	-18.31
CAediting_1048913	chr15_64142083_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6768-5p	64142077	64142083	7mer-m8	64142061	64142084	153.00	-22.33
CAediting_1048916	chr15_64142130_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1343-3p	64142125	64142132	8mer-1a	64142109	64142132	143.00	-19.57
CAediting_1048916	chr15_64142130_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6783-3p	64142125	64142132	8mer-1a	64142111	64142132	151.00	-21.01
CAediting_1048916	chr15_64142130_+	ENSG00000028528.13	ENST00000380285	hsa-miR-939-3p	64142124	64142131	8mer-1a	64142106	64142131	142.00	-24.66
CAediting_1048920	chr15_64142174_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1909-3p	64142169	64142175	7mer-1a	64142155	64142175	162.00	-31.96
CAediting_1048920	chr15_64142174_+	ENSG00000028528.13	ENST00000380285	hsa-miR-211-3p	64142167	64142173	7mer-m8	64142154	64142174	150.00	-22.46
CAediting_1048920	chr15_64142174_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6722-3p	64142169	64142175	7mer-1a	64142154	64142175	142.00	-23.31
CAediting_1048923	chr15_64142179_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6844	64142173	64142179	7mer-m8	64142160	64142180	140.00	-8.70
CAediting_1048926	chr15_64142192_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4676-5p	64142188	64142194	7mer-m8	64142175	64142195	147.00	-11.92
CAediting_1048926	chr15_64142192_+	ENSG00000028528.13	ENST00000380285	hsa-miR-575	64142188	64142194	7mer-m8	64142177	64142195	150.00	-15.51
CAediting_1048931	chr15_64142243_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6717-5p	64142238	64142244	7mer-m8	64142224	64142245	151.00	-23.92
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4726-3p	64142242	64142248	7mer-m8	64142222	64142249	146.00	-23.86
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6724-5p	64142246	64142252	7mer-m8	64142232	64142253	145.00	-27.06
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6724-5p	64142246	64142252	7mer-m8	64142232	64142253	145.00	-27.06
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6724-5p	64142246	64142252	7mer-m8	64142232	64142253	145.00	-27.06
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6724-5p	64142246	64142252	7mer-m8	64142232	64142253	145.00	-27.06
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6773-5p	64142246	64142252	7mer-m8	64142231	64142253	157.00	-25.98
CAediting_1048873	chr15_64140602_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4433b-5p	64140599	64140605	7mer-m8	64140586	64140606	140.00	-10.81
CAediting_1048874	chr15_64140604_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5001-3p	64140601	64140607	7mer-m8	64140587	64140608	145.00	-16.34
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10a-5p	64140603	64140609	7mer-m8	64140590	64140610	146.00	-14.48
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10b-5p	64140603	64140609	7mer-m8	64140588	64140610	140.00	-13.86
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-339-5p	64140602	64140608	7mer-m8	64140588	64140609	150.00	-17.72
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4421	64140601	64140607	7mer-m8	64140586	64140608	150.00	-14.76
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4725-5p	64140604	64140610	7mer-m8	64140591	64140611	140.00	-15.96
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-504-5p	64140604	64140610	7mer-m8	64140592	64140611	147.00	-18.15
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5699-3p	64140601	64140607	7mer-m8	64140587	64140608	141.00	-16.39
CAediting_1048877	chr15_64140627_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3940-3p	64140624	64140630	7mer-m8	64140610	64140631	143.00	-19.68
CAediting_1048882	chr15_64140648_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3672	64140646	64140652	7mer-m8	64140626	64140653	147.00	-15.42
CAediting_1048882	chr15_64140648_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6529-3p	64140641	64140647	7mer-m8	64140626	64140648	152.00	-12.76
CAediting_1048882	chr15_64140648_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6864-3p	64140646	64140652	7mer-m8	64140633	64140653	140.00	-11.79
CAediting_1048882	chr15_64140648_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6889-3p	64140641	64140647	7mer-m8	64140628	64140648	144.00	-19.80
CAediting_1048882	chr15_64140648_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7157-3p	64140642	64140647	6mer	64140626	64140648	142.00	-17.03
CAediting_1048882	chr15_64140648_+	ENSG00000028528.13	ENST00000380285	hsa-miR-873-3p	64140645	64140652	8mer-1a	64140631	64140652	142.00	-14.76
CAediting_1048885	chr15_64140664_+	ENSG00000028528.13	ENST00000380285	hsa-miR-17-3p	64140657	64140663	7mer-m8	64140642	64140664	153.00	-17.57
CAediting_1048885	chr15_64140664_+	ENSG00000028528.13	ENST00000380285	hsa-miR-485-5p	64140661	64140667	7mer-m8	64140645	64140668	156.00	-17.86
CAediting_1048885	chr15_64140664_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6884-5p	64140661	64140667	7mer-m8	64140645	64140668	154.00	-24.34
CAediting_1048886	chr15_64140670_+	ENSG00000028528.13	ENST00000380285	hsa-miR-25-5p	64140665	64140671	7mer-m8	64140653	64140672	143.00	-19.97
CAediting_1048886	chr15_64140670_+	ENSG00000028528.13	ENST00000380285	hsa-miR-658	64140664	64140670	7mer-m8	64140643	64140671	152.00	-28.56
CAediting_1048890	chr15_64140710_+	ENSG00000028528.13	ENST00000380285	hsa-miR-619-3p	64140705	64140712	8mer-1a	64140690	64140712	149.00	-16.17
CAediting_1048890	chr15_64140710_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7851-3p	64140706	64140712	7mer-1a	64140691	64140712	164.00	-35.10
CAediting_1048892	chr15_64140725_+	ENSG00000028528.13	ENST00000380285	hsa-miR-100-5p	64140721	64140727	7mer-m8	64140705	64140728	161.00	-24.86
CAediting_1048892	chr15_64140725_+	ENSG00000028528.13	ENST00000380285	hsa-miR-99a-5p	64140721	64140727	7mer-m8	64140708	64140728	160.00	-19.89
CAediting_1048892	chr15_64140725_+	ENSG00000028528.13	ENST00000380285	hsa-miR-99b-5p	64140721	64140727	7mer-m8	64140705	64140728	155.00	-26.02
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1268a	64140737	64140744	8mer-1a	64140727	64140744	164.00	-28.00
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1268b	64140737	64140744	8mer-1a	64140725	64140744	164.00	-28.00
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4486	64140739	64140745	7mer-m8	64140730	64140746	147.00	-26.21
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6853-5p	64140735	64140741	7mer-m8	64140716	64140742	153.00	-23.78
CAediting_1048895	chr15_64140749_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1207-3p	64140742	64140749	8mer-1a	64140732	64140749	140.00	-14.68
CAediting_1048895	chr15_64140749_+	ENSG00000028528.13	ENST00000380285	hsa-miR-34a-3p	64140745	64140751	7mer-m8	64140731	64140752	140.00	-8.12
CAediting_1048899	chr15_64140769_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3685	64140764	64140770	7mer-m8	64140750	64140771	156.00	-13.58
CAediting_1048900	chr15_64140770_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3675-3p	64140765	64140771	7mer-m8	64140751	64140772	145.00	-14.53
CAediting_1048900	chr15_64140770_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4684-5p	64140764	64140770	7mer-m8	64140749	64140771	159.00	-14.96
CAediting_1048902	chr15_64140807_+	ENSG00000028528.13	ENST00000380285	hsa-miR-28-5p	64140805	64140811	7mer-m8	64140792	64140812	151.00	-22.43
CAediting_1048902	chr15_64140807_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3139	64140805	64140811	7mer-m8	64140790	64140812	160.00	-24.21
CAediting_1048902	chr15_64140807_+	ENSG00000028528.13	ENST00000380285	hsa-miR-708-5p	64140805	64140811	7mer-m8	64140791	64140812	150.00	-19.13
CAediting_1048907	chr15_64140846_+	ENSG00000028528.13	ENST00000380285	hsa-miR-326	64140841	64140847	7mer-m8	64140829	64140848	141.00	-13.25
CAediting_1048907	chr15_64140846_+	ENSG00000028528.13	ENST00000380285	hsa-miR-330-5p	64140841	64140847	7mer-m8	64140827	64140848	140.00	-18.36
CAediting_1048907	chr15_64140846_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4314	64140840	64140846	7mer-m8	64140830	64140847	142.00	-19.67
CAediting_1048907	chr15_64140846_+	ENSG00000028528.13	ENST00000380285	hsa-miR-514a-5p	64140842	64140848	7mer-m8	64140826	64140849	150.00	-18.63
CAediting_1048907	chr15_64140846_+	ENSG00000028528.13	ENST00000380285	hsa-miR-514a-5p	64140842	64140848	7mer-m8	64140826	64140849	150.00	-18.63
CAediting_1048907	chr15_64140846_+	ENSG00000028528.13	ENST00000380285	hsa-miR-514a-5p	64140842	64140848	7mer-m8	64140826	64140849	150.00	-18.63
CAediting_1048908	chr15_64140847_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3189-3p	64140841	64140847	7mer-m8	64140829	64140848	153.00	-21.44
CAediting_1048908	chr15_64140847_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6813-3p	64140842	64140848	7mer-m8	64140829	64140849	140.00	-10.68
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1285-3p	64140875	64140881	7mer-m8	64140861	64140882	140.00	-16.54
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1285-3p	64140875	64140881	7mer-m8	64140861	64140882	140.00	-16.54
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3187-5p	64140875	64140881	7mer-m8	64140862	64140882	156.00	-23.95
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3622b-5p	64140872	64140878	7mer-m8	64140860	64140879	151.00	-19.22
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4253	64140873	64140880	8mer-1a	64140863	64140880	140.00	-14.06
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5189-5p	64140875	64140881	7mer-m8	64140861	64140882	150.00	-20.57
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-612	64140875	64140881	7mer-m8	64140859	64140882	153.00	-26.97
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6860	64140875	64140881	7mer-m8	64140862	64140882	148.00	-20.42
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6862-5p	64140873	64140880	8mer-1a	64140859	64140880	156.00	-19.50
CAediting_1048909	chr15_64140877_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6862-5p	64140873	64140880	8mer-1a	64140859	64140880	156.00	-19.50
CAediting_1048910	chr15_64140881_+	ENSG00000028528.13	ENST00000380285	hsa-miR-137-5p	64140874	64140880	7mer-m8	64140860	64140881	142.00	-20.44
CAediting_1048911	chr15_64142061_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6075	64142054	64142060	7mer-m8	64142040	64142061	156.00	-25.96
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3136-3p	64142120	64142126	7mer-m8	64142106	64142127	152.00	-14.96
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6724-5p	64142122	64142129	8mer-1a	64142107	64142129	143.00	-20.65
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6724-5p	64142122	64142129	8mer-1a	64142107	64142129	143.00	-20.65
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6724-5p	64142122	64142129	8mer-1a	64142107	64142129	143.00	-20.65
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6724-5p	64142122	64142129	8mer-1a	64142107	64142129	143.00	-20.65
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6773-5p	64142122	64142129	8mer-1a	64142107	64142129	153.00	-22.90
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7155-3p	64142120	64142126	7mer-m8	64142109	64142127	145.00	-17.63
CAediting_1048919	chr15_64142161_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3156-3p	64142156	64142162	7mer-m8	64142143	64142163	140.00	-17.24
CAediting_1048919	chr15_64142161_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3156-3p	64142156	64142162	7mer-m8	64142143	64142163	140.00	-17.24
CAediting_1048919	chr15_64142161_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4301	64142155	64142162	8mer-1a	64142142	64142162	148.00	-17.90
CAediting_1048919	chr15_64142161_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4433a-5p	64142157	64142163	7mer-m8	64142144	64142164	140.00	-19.34
CAediting_1048922	chr15_64142178_+	ENSG00000028528.13	ENST00000380285	hsa-miR-578	64142173	64142179	7mer-m8	64142159	64142180	146.00	-12.02
CAediting_1048925	chr15_64142182_+	ENSG00000028528.13	ENST00000380285	hsa-miR-153-5p	64142175	64142182	8mer-1a	64142163	64142182	153.00	-16.05
CAediting_1048925	chr15_64142182_+	ENSG00000028528.13	ENST00000380285	hsa-miR-335-3p	64142179	64142185	7mer-m8	64142165	64142186	157.00	-8.81
CAediting_1048928	chr15_64142230_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1207-3p	64142223	64142229	7mer-m8	64142212	64142230	153.00	-17.87
CAediting_1048929	chr15_64142238_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6772-3p	64142234	64142239	6mer	64142216	64142240	144.00	-24.32
CAediting_1048934	chr15_64142256_+	ENSG00000028528.13	ENST00000380285	hsa-miR-331-3p	64142250	64142256	7mer-m8	64142237	64142257	153.00	-22.17
CAediting_1048934	chr15_64142256_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4292	64142249	64142255	7mer-m8	64142238	64142256	147.00	-27.29
CAediting_1048934	chr15_64142256_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4640-3p	64142252	64142258	7mer-m8	64142238	64142259	149.00	-20.75
CAediting_1048934	chr15_64142256_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6791-5p	64142249	64142255	7mer-m8	64142235	64142256	146.00	-28.35
CAediting_1048936	chr15_64142273_+	ENSG00000028528.13	ENST00000380285	hsa-miR-324-3p	64142266	64142272	7mer-m8	64142250	64142273	144.00	-29.13
CAediting_1048878	chr15_64140634_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3130-5p	64140629	64140634	6mer	64140615	64140635	140.00	-23.00
CAediting_1048878	chr15_64140634_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3130-5p	64140629	64140634	6mer	64140615	64140635	140.00	-23.00
CAediting_1048883	chr15_64140653_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4537	64140650	64140657	8mer-1a	64140634	64140657	154.00	-21.66
CAediting_1048917	chr15_64142132_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3189-3p	64142125	64142132	8mer-1a	64142113	64142132	153.00	-16.78
CAediting_1048917	chr15_64142132_+	ENSG00000028528.13	ENST00000380285	hsa-miR-362-5p	64142127	64142133	7mer-m8	64142112	64142134	157.00	-20.59
CAediting_1048917	chr15_64142132_+	ENSG00000028528.13	ENST00000380285	hsa-miR-500a-5p	64142128	64142134	7mer-m8	64142114	64142135	155.00	-18.22
CAediting_1048917	chr15_64142132_+	ENSG00000028528.13	ENST00000380285	hsa-miR-500b-5p	64142127	64142133	7mer-m8	64142117	64142134	140.00	-12.56

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10400-3p	64142122	64142129	8mer-1a	64142108	64142129	140	-15.78
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10400-3p	64142246	64142252	7mer-m8	64142231	64142253	142	-25.6
CAediting_1048933	chr15_64142253_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10400-3p	64142246	64142252	7mer-m8	64142231	64142253	142	-25.6
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10401-5p	64140735	64140741	7mer-m8	64140721	64140742	146	-23.13
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10401-5p	64140735	64140741	7mer-m8	64140721	64140742	146	-23.13
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10401-5p	64140735	64140741	7mer-m8	64140721	64140742	146	-23.13
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-10401-5p	64140735	64140741	7mer-m8	64140721	64140742	146	-23.13
CAediting_1048911	chr15_64142061_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1271-3p	64142059	64142066	8mer-1a	64142044	64142066	148	-20.21
CAediting_1048877	chr15_64140627_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1285-3p	64140622	64140627	6mer	64140606	64140628	155	-31.4
CAediting_1048877	chr15_64140627_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1285-3p	64140622	64140627	6mer	64140606	64140628	155	-31.4
CAediting_1048905	chr15_64140824_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1288-5p	64140821	64140827	7mer-m8	64140809	64140828	144	-17.17
CAediting_1048919	chr15_64142161_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1304-3p	64142156	64142162	7mer-1a	64142141	64142162	141	-21.67
CAediting_1048933	chr15_64142253_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1343-3p	64142249	64142255	7mer-m8	64142235	64142256	141	-19.49
CAediting_1048934	chr15_64142256_+	ENSG00000028528.13	ENST00000380285	hsa-miR-1343-3p	64142249	64142255	7mer-m8	64142235	64142256	141	-19.49
CAediting_1048920	chr15_64142174_+	ENSG00000028528.13	ENST00000380285	hsa-miR-135a-2-3p	64142169	64142176	8mer-1a	64142155	64142176	152	-18.96
CAediting_1048921	chr15_64142176_+	ENSG00000028528.13	ENST00000380285	hsa-miR-135a-2-3p	64142169	64142176	8mer-1a	64142155	64142176	152	-18.96
CAediting_1048920	chr15_64142174_+	ENSG00000028528.13	ENST00000380285	hsa-miR-135b-3p	64142169	64142176	8mer-1a	64142155	64142176	143	-15.12
CAediting_1048921	chr15_64142176_+	ENSG00000028528.13	ENST00000380285	hsa-miR-135b-3p	64142169	64142176	8mer-1a	64142155	64142176	143	-15.12
CAediting_1048888	chr15_64140687_+	ENSG00000028528.13	ENST00000380285	hsa-miR-219b-3p	64140684	64140690	7mer-m8	64140671	64140691	153	-15.53
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-24-3p	64142244	64142250	7mer-m8	64142230	64142251	144	-13.13
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-24-3p	64142244	64142250	7mer-m8	64142230	64142251	144	-13.13
CAediting_1048888	chr15_64140687_+	ENSG00000028528.13	ENST00000380285	hsa-miR-302f	64140683	64140689	7mer-m8	64140674	64140690	147	-8.32
CAediting_1048910	chr15_64140881_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3085-3p	64140879	64140886	8mer-1a	64140865	64140886	153	-22.42
CAediting_1048883	chr15_64140653_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3160-3p	64140650	64140657	8mer-1a	64140636	64140657	152	-17.18
CAediting_1048883	chr15_64140653_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3160-3p	64140650	64140657	8mer-1a	64140636	64140657	152	-17.18
CAediting_1048884	chr15_64140658_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3174	64140654	64140659	6mer	64140639	64140660	145	-23.23
CAediting_1048904	chr15_64140819_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3622a-3p	64140816	64140823	8mer-1a	64140802	64140823	144	-13.89
CAediting_1048904	chr15_64140819_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3622b-3p	64140816	64140823	8mer-1a	64140803	64140823	153	-19.33
CAediting_1048875	chr15_64140606_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3664-5p	64140603	64140609	7mer-m8	64140589	64140610	153	-16.54
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3664-5p	64140603	64140609	7mer-m8	64140589	64140610	153	-16.54
CAediting_1048873	chr15_64140602_+	ENSG00000028528.13	ENST00000380285	hsa-miR-371b-5p	64140596	64140603	8mer-1a	64140583	64140603	150	-10.14
CAediting_1048873	chr15_64140602_+	ENSG00000028528.13	ENST00000380285	hsa-miR-373-5p	64140596	64140603	8mer-1a	64140581	64140603	142	-9.82
CAediting_1048885	chr15_64140664_+	ENSG00000028528.13	ENST00000380285	hsa-miR-377-5p	64140661	64140667	7mer-m8	64140645	64140668	154	-17.36
CAediting_1048906	chr15_64140837_+	ENSG00000028528.13	ENST00000380285	hsa-miR-377-5p	64140835	64140841	7mer-m8	64140821	64140842	152	-15.94
CAediting_1048911	chr15_64142061_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3922-3p	64142056	64142061	6mer	64142041	64142062	144	-22.74
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-3934-3p	64142243	64142249	7mer-m8	64142229	64142250	145	-18.05
CAediting_1048912	chr15_64142067_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4252	64142065	64142071	7mer-m8	64142054	64142072	150	-21.53
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4437	64142121	64142128	8mer-1a	64142108	64142128	146	-19.6
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4437	64142245	64142252	8mer-1a	64142232	64142252	150	-22.54
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4455	64140737	64140744	8mer-1a	64140728	64140744	145	-12.23
CAediting_1048889	chr15_64140701_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4478	64140698	64140704	7mer-m8	64140690	64140705	149	-22.36
CAediting_1048877	chr15_64140627_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4486	64140621	64140627	7mer-m8	64140612	64140628	145	-19.43
CAediting_1048910	chr15_64140881_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4505	64140877	64140884	8mer-1a	64140866	64140884	143	-20.79
CAediting_1048875	chr15_64140606_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4522	64140604	64140610	7mer-m8	64140591	64140611	148	-14.14
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4522	64140604	64140610	7mer-m8	64140591	64140611	148	-14.14
CAediting_1048889	chr15_64140701_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4649-3p	64140695	64140701	7mer-m8	64140682	64140702	140	-14.11
CAediting_1048915	chr15_64142124_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4674	64142122	64142129	8mer-1a	64142109	64142129	147	-18.21
CAediting_1048932	chr15_64142248_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4674	64142246	64142252	7mer-m8	64142233	64142253	151	-25.53
CAediting_1048933	chr15_64142253_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4674	64142246	64142252	7mer-m8	64142233	64142253	151	-25.53
CAediting_1048935	chr15_64142269_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4772-3p	64142263	64142269	7mer-m8	64142248	64142270	154	-18.29
CAediting_1048912	chr15_64142067_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5008-3p	64142062	64142067	6mer	64142045	64142068	150	-28.53
CAediting_1048881	chr15_64140647_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5186	64140645	64140652	8mer-1a	64140627	64140652	145	-14.62
CAediting_1048882	chr15_64140648_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5186	64140645	64140652	8mer-1a	64140627	64140652	145	-14.62
CAediting_1048897	chr15_64140758_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548aw	64140751	64140757	7mer-m8	64140739	64140758	154	-11.85
CAediting_1048911	chr15_64142061_+	ENSG00000028528.13	ENST00000380285	hsa-miR-550a-3-5p	64142059	64142066	8mer-1a	64142047	64142066	140	-16.87
CAediting_1048911	chr15_64142061_+	ENSG00000028528.13	ENST00000380285	hsa-miR-550a-5p	64142059	64142066	8mer-1a	64142044	64142066	140	-22.17
CAediting_1048911	chr15_64142061_+	ENSG00000028528.13	ENST00000380285	hsa-miR-550a-5p	64142059	64142066	8mer-1a	64142044	64142066	140	-22.17
CAediting_1048912	chr15_64142067_+	ENSG00000028528.13	ENST00000380285	hsa-miR-550b-2-5p	64142060	64142066	7mer-m8	64142046	64142067	145	-18.17
CAediting_1048912	chr15_64142067_+	ENSG00000028528.13	ENST00000380285	hsa-miR-550b-2-5p	64142060	64142066	7mer-m8	64142046	64142067	145	-18.17
CAediting_1048878	chr15_64140634_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5586-5p	64140628	64140634	7mer-m8	64140614	64140635	151	-16.2
CAediting_1048894	chr15_64140745_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5589-5p	64140740	64140746	7mer-m8	64140727	64140747	145	-21.43
CAediting_1048910	chr15_64140881_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5589-5p	64140876	64140882	7mer-m8	64140863	64140883	147	-20.53
CAediting_1048937	chr15_64142310_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5691	64142308	64142315	8mer-1a	64142295	64142315	147	-16.98
CAediting_1048938	chr15_64142315_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5691	64142308	64142315	8mer-1a	64142295	64142315	147	-16.98
CAediting_1048916	chr15_64142130_+	ENSG00000028528.13	ENST00000380285	hsa-miR-578	64142127	64142132	6mer	64142112	64142133	146	-16.96
CAediting_1048917	chr15_64142132_+	ENSG00000028528.13	ENST00000380285	hsa-miR-578	64142127	64142132	6mer	64142112	64142133	146	-16.96
CAediting_1048918	chr15_64142133_+	ENSG00000028528.13	ENST00000380285	hsa-miR-578	64142127	64142132	6mer	64142112	64142133	146	-16.96
CAediting_1048910	chr15_64140881_+	ENSG00000028528.13	ENST00000380285	hsa-miR-5787	64140877	64140884	8mer-1a	64140865	64140884	140	-22.17
CAediting_1048885	chr15_64140664_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6086	64140661	64140667	7mer-m8	64140649	64140668	150	-23.6
CAediting_1048873	chr15_64140602_+	ENSG00000028528.13	ENST00000380285	hsa-miR-616-5p	64140596	64140603	8mer-1a	64140583	64140603	141	-8.06
CAediting_1048916	chr15_64142130_+	ENSG00000028528.13	ENST00000380285	hsa-miR-635	64142124	64142131	8mer-1a	64142109	64142131	142	-15.19
CAediting_1048910	chr15_64140881_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6504-5p	64140879	64140886	8mer-1a	64140867	64140886	148	-17.09
CAediting_1048878	chr15_64140634_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6512-3p	64140627	64140633	7mer-m8	64140613	64140634	140	-18.25
CAediting_1048885	chr15_64140664_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6516-5p	64140657	64140663	7mer-m8	64140645	64140664	148	-12.72
CAediting_1048912	chr15_64142067_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6529-3p	64142061	64142067	7mer-m8	64142047	64142068	145	-15.21
CAediting_1048877	chr15_64140627_+	ENSG00000028528.13	ENST00000380285	hsa-miR-661	64140623	64140629	7mer-m8	64140607	64140630	145	-24.51
CAediting_1048878	chr15_64140634_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6720-5p	64140627	64140633	7mer-m8	64140613	64140634	152	-22.36
CAediting_1048912	chr15_64142067_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6737-3p	64142062	64142067	6mer	64142047	64142068	144	-20.48
CAediting_1048937	chr15_64142310_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6773-3p	64142304	64142311	8mer-1a	64142290	64142311	146	-16.39
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6776-5p	64140739	64140745	7mer-m8	64140731	64140746	153	-26.73
CAediting_1048894	chr15_64140745_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6776-5p	64140739	64140745	7mer-m8	64140731	64140746	153	-26.73
CAediting_1048933	chr15_64142253_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6783-3p	64142249	64142255	7mer-m8	64142235	64142256	151	-21.5
CAediting_1048934	chr15_64142256_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6783-3p	64142249	64142255	7mer-m8	64142235	64142256	151	-21.5
CAediting_1048893	chr15_64140741_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6796-5p	64140734	64140740	7mer-m8	64140719	64140741	155	-21.62
CAediting_1048886	chr15_64140670_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6802-5p	64140667	64140673	7mer-m8	64140657	64140674	155	-21.21
CAediting_1048892	chr15_64140725_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6804-3p	64140723	64140729	7mer-m8	64140708	64140730	155	-18.21
CAediting_1048937	chr15_64142310_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6805-3p	64142308	64142315	8mer-1a	64142294	64142315	148	-17.28
CAediting_1048938	chr15_64142315_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6805-3p	64142308	64142315	8mer-1a	64142294	64142315	148	-17.28
CAediting_1048910	chr15_64140881_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6842-3p	64140878	64140884	7mer-m8	64140860	64140885	144	-23.01
CAediting_1048874	chr15_64140604_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6888-3p	64140601	64140607	7mer-m8	64140588	64140608	151	-15.45
CAediting_1048875	chr15_64140606_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6888-3p	64140601	64140607	7mer-m8	64140588	64140608	151	-15.45
CAediting_1048876	chr15_64140608_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6888-3p	64140601	64140607	7mer-m8	64140588	64140608	151	-15.45
CAediting_1048912	chr15_64142067_+	ENSG00000028528.13	ENST00000380285	hsa-miR-6889-3p	64142061	64142067	7mer-m8	64142049	64142068	140	-21.08
CAediting_1048913	chr15_64142083_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7151-3p	64142076	64142082	7mer-m8	64142067	64142083	142	-15
CAediting_1048927	chr15_64142220_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7151-3p	64142213	64142219	7mer-m8	64142199	64142220	143	-18.9
CAediting_1048889	chr15_64140701_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7160-5p	64140696	64140702	7mer-m8	64140683	64140703	147	-20.02
CAediting_1048904	chr15_64140819_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7162-3p	64140813	64140819	7mer-m8	64140800	64140820	142	-17.47
CAediting_1048886	chr15_64140670_+	ENSG00000028528.13	ENST00000380285	hsa-miR-7847-3p	64140664	64140670	7mer-m8	64140647	64140671	148	-22.2
CAediting_1048914	chr15_64142119_+	ENSG00000028528.13	ENST00000380285	hsa-miR-8062	64142114	64142120	7mer-m8	64142101	64142121	141	-12.31
CAediting_1048907	chr15_64140846_+	ENSG00000028528.13	ENST00000380285	hsa-miR-887-5p	64140839	64140846	8mer-1a	64140826	64140846	140	-10.55
CAediting_1048890	chr15_64140710_+	ENSG00000028528.13	ENST00000380285	hsa-miR-890	64140705	64140712	8mer-1a	64140694	64140712	154	-18.35
CAediting_1048877	chr15_64140627_+	ENSG00000028528.13	ENST00000380285	hsa-miR-939-3p	64140622	64140628	7mer-m8	64140609	64140629	140	-15.42
CAediting_1048933	chr15_64142253_+	ENSG00000028528.13	ENST00000380285	hsa-miR-939-3p	64142248	64142255	8mer-1a	64142236	64142255	145	-16.32

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4477b	64129958	64129964	7mer-m8	64129944	64129965	148	-9.7
CAediting_748296	chr10_51299626_+	ENSG00000028528.13	ENST00000380285	hsa-miR-605-3p	64138419	64138425	7mer-m8	64138404	64138426	147	-23.53
CAediting_748296	chr10_51299626_+	ENSG00000028528.13	ENST00000380285	hsa-miR-605-3p	64138554	64138560	7mer-m8	64138537	64138561	147	-19.06
CAediting_980496	chr14_31014685_-	ENSG00000028528.13	ENST00000380285	hsa-miR-624-3p	64142162	64142168	7mer-m8	64142149	64142169	156	-15.22
CAediting_688080	chr9_63819626_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4477b	64139812	64139818	7mer-m8	64139797	64139819	161	-17.62
CAediting_688081	chr9_63819627_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4477b	64139571	64139577	7mer-m8	64139558	64139578	158	-13.59
CAediting_688081	chr9_63819627_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4477b	64138389	64138395	7mer-m8	64138375	64138396	140	-8.98
CAediting_748296	chr10_51299626_+	ENSG00000028528.13	ENST00000261889	hsa-miR-605-3p	64138419	64138425	7mer-m8	64138404	64138426	147	-23.53
CAediting_748296	chr10_51299626_+	ENSG00000028528.13	ENST00000261889	hsa-miR-605-3p	64138554	64138560	7mer-m8	64138537	64138561	147	-19.06
CAediting_688080	chr9_63819626_+	ENSG00000028528.13	ENST00000261889	hsa-miR-4477b	64139812	64139818	7mer-m8	64139797	64139819	161	-17.62
CAediting_688081	chr9_63819627_+	ENSG00000028528.13	ENST00000261889	hsa-miR-4477b	64139571	64139577	7mer-m8	64139558	64139578	158	-13.59
CAediting_688081	chr9_63819627_+	ENSG00000028528.13	ENST00000261889	hsa-miR-4477b	64138389	64138395	7mer-m8	64138375	64138396	140	-8.98
CAediting_688080	chr9_63819626_+	ENSG00000028528.13	ENST00000560260	hsa-miR-4477b	64129958	64129964	7mer-m8	64129944	64129965	148	-9.7
CAediting_396018	chr5_1062918_-	ENSG00000028528.13	ENST00000380285	hsa-miR-4635	64129959	64129966	8mer-1a	64129943	64129966	151	-24.3
CAediting_228905	chr2_188297554_+	ENSG00000028528.13	ENST00000380285	hsa-miR-561-3p	64130297	64130304	8mer-1a	64130283	64130304	140	-7.7
CAediting_1054808	chr15_66496985_-	ENSG00000028528.13	ENST00000380285	hsa-miR-4512	64138895	64138901	7mer-1a	64138880	64138901	141	-19.62
CAediting_1229413	chr17_67471544_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548aa	64141293	64141300	8mer-1a	64141276	64141300	142	-9.86
CAediting_1160181	chr17_7017644_-	ENSG00000028528.13	ENST00000380285	hsa-miR-195-3p	64139201	64139207	7mer-m8	64139187	64139208	153	-12.36
CAediting_1351755	chr19_40282625_-	ENSG00000028528.13	ENST00000380285	hsa-miR-641	64141283	64141289	7mer-m8	64141267	64141290	141	-13.01
CAediting_1351755	chr19_40282625_-	ENSG00000028528.13	ENST00000380285	hsa-miR-641	64138531	64138536	6mer	64138514	64138537	148	-19.96
CAediting_1368054	chr19_46709310_-	ENSG00000028528.13	ENST00000380285	hsa-miR-320e	64143523	64143530	8mer-1a	64143513	64143530	151	-18
CAediting_117844	chr1_162342605_+	ENSG00000028528.13	ENST00000380285	hsa-miR-556-3p	64141976	64141982	7mer-m8	64141963	64141983	142	-8.94
CAediting_77128	chr1_85133844_+	ENSG00000028528.13	ENST00000380285	hsa-miR-4423-3p	64138626	64138632	7mer-m8	64138614	64138633	147	-13.79
CAediting_228905	chr2_188297554_+	ENSG00000028528.13	ENST00000380285	hsa-miR-561-3p	64143378	64143384	7mer-m8	64143366	64143385	151	-13.06
CAediting_573001	chr7_92204086_-	ENSG00000028528.13	ENST00000380285	hsa-miR-1285-5p	64141757	64141763	7mer-m8	64141743	64141764	146	-15.04
CAediting_1054808	chr15_66496985_-	ENSG00000028528.13	ENST00000261889	hsa-miR-4512	64138895	64138901	7mer-1a	64138880	64138901	141	-19.62
CAediting_1160181	chr17_7017644_-	ENSG00000028528.13	ENST00000261889	hsa-miR-195-3p	64139201	64139207	7mer-m8	64139187	64139208	153	-12.36
CAediting_1351755	chr19_40282625_-	ENSG00000028528.13	ENST00000261889	hsa-miR-641	64138531	64138536	6mer	64138514	64138537	148	-19.96
CAediting_77128	chr1_85133844_+	ENSG00000028528.13	ENST00000261889	hsa-miR-4423-3p	64138626	64138632	7mer-m8	64138614	64138633	147	-13.79
CAediting_1229414	chr17_67471546_+	ENSG00000028528.13	ENST00000560260	hsa-miR-548aa	64129904	64129910	7mer-m8	64129887	64129911	140	-8.18
CAediting_396018	chr5_1062918_-	ENSG00000028528.13	ENST00000560260	hsa-miR-4635	64129959	64129966	8mer-1a	64129943	64129966	151	-24.3
CAediting_228905	chr2_188297554_+	ENSG00000028528.13	ENST00000560260	hsa-miR-561-3p	64130297	64130304	8mer-1a	64130283	64130304	140	-7.7
CAediting_86358	chr1_109598906_+	ENSG00000028528.13	ENST00000560260	hsa-miR-197-5p	64134872	64134878	7mer-1a	64134856	64134878	140	-33.21
CAediting_468389	chr6_31355314_-	ENSG00000028528.13	ENST00000560829	hsa-miR-6891-5p	64137671	64137677	7mer-m8	64137660	64137678	146	-20.31
CAediting_1524209	chrX_134546392_-	ENSG00000028528.13	ENST00000560829	hsa-miR-503-5p	64137650	64137656	7mer-m8	64137634	64137657	156	-22.06
CAediting_468389	chr6_31355314_-	ENSG00000028528.13	ENST00000380285	hsa-miR-6891-5p	64137671	64137677	7mer-m8	64137660	64137678	146	-20.31
CAediting_468389	chr6_31355314_-	ENSG00000028528.13	ENST00000380285	hsa-miR-6891-5p	64141307	64141313	7mer-m8	64141296	64141314	149	-22.03
CAediting_1524209	chrX_134546392_-	ENSG00000028528.13	ENST00000380285	hsa-miR-503-5p	64137650	64137656	7mer-m8	64137634	64137657	156	-22.06
CAediting_468389	chr6_31355314_-	ENSG00000028528.13	ENST00000559389	hsa-miR-6891-5p	64118193	64118200	8mer-1a	64118182	64118200	156	-26.64

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_468389	chr6_31355314_-	ENSG00000028528.13	ENST00000380285	hsa-miR-6891-5p	64131840	64131846	7mer-m8	64131829	64131847	154	-19.95
CAediting_846604	chr11_93733708_-	ENSG00000028528.13	ENST00000380285	hsa-miR-1304-3p	64141640	64141646	7mer-m8	64141623	64141647	147	-20.4
CAediting_846604	chr11_93733708_-	ENSG00000028528.13	ENST00000380285	hsa-miR-1304-3p	64142020	64142026	7mer-m8	64142006	64142027	149	-21.12
CAediting_846604	chr11_93733708_-	ENSG00000028528.13	ENST00000380285	hsa-miR-1304-3p	64142156	64142162	7mer-1a	64142141	64142162	141	-21.67
CAediting_393	chr1_1167164_+	ENSG00000028528.13	ENST00000380285	hsa-miR-200b-3p	64142762	64142768	7mer-m8	64142748	64142769	140	-7.98
CAediting_396018	chr5_1062918_-	ENSG00000028528.13	ENST00000380285	hsa-miR-4635	64143049	64143055	7mer-m8	64143036	64143056	150	-15.38
CAediting_1524209	chrX_134546392_-	ENSG00000028528.13	ENST00000380285	hsa-miR-503-5p	64138134	64138139	6mer	64138119	64138140	142	-15.84
CAediting_1229413	chr17_67471544_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548aa	64139108	64139115	8mer-1a	64139091	64139115	149	-5.31
CAediting_1229414	chr17_67471546_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548aa	64139108	64139115	8mer-1a	64139091	64139115	149	-5.31
CAediting_1229415	chr17_67471547_+	ENSG00000028528.13	ENST00000380285	hsa-miR-548aa	64139108	64139115	8mer-1a	64139091	64139115	149	-5.31
CAediting_228905	chr2_188297554_+	ENSG00000028528.13	ENST00000380285	hsa-miR-561-3p	64144058	64144065	8mer-1a	64144044	64144065	150	-4.26
CAediting_524911	chr7_5495852_-	ENSG00000028528.13	ENST00000380285	hsa-miR-589-3p	64138189	64138196	8mer-1a	64138173	64138196	144	-14.37
CAediting_980496	chr14_31014685_-	ENSG00000028528.13	ENST00000380285	hsa-miR-624-3p	64139757	64139763	7mer-m8	64139744	64139764	152	-17.45
CAediting_1229415	chr17_67471547_+	ENSG00000028528.13	ENST00000261889	hsa-miR-548aa	64139108	64139115	8mer-1a	64139091	64139115	149	-5.31
CAediting_980496	chr14_31014685_-	ENSG00000028528.13	ENST00000261889	hsa-miR-624-3p	64139757	64139763	7mer-m8	64139744	64139764	152	-17.45
CAediting_468389	chr6_31355314_-	ENSG00000028528.13	ENST00000560260	hsa-miR-6891-5p	64131840	64131846	7mer-m8	64131829	64131847	154	-19.95
CAediting_396018	chr5_1062918_-	ENSG00000028528.13	ENST00000560861	hsa-miR-4635	64143049	64143055	7mer-m8	64143036	64143056	150	-15.38

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SNX1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SNX1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_1048880	chr15_64140645_+	.	.	0.0377903120388786	0.112869935046727	.	.
OV	CAediting_1048880	chr15_64140645_+	0.0292403049449057	0.157802120601026	.	.	.	.
BRCA	CAediting_1048904	chr15_64140819_+	0.0362122508065006	0.176575103218763	.	.	.	.
ESCA	CAediting_1048906	chr15_64140837_+	0.0463586431599466	0.186171886398923	.	.	.	.
OV	CAediting_1048908	chr15_64140847_+	.	.	.	.	0.0293133875106597	0.279224908178175
BLCA	CAediting_1048913	chr15_64142083_+	0.0473918958606709	0.246902457811224	.	.	.	.
LGG	CAediting_1048913	chr15_64142083_+	0.00017319924515169	0.477422036900804	.	.	.	.
LUAD	CAediting_1048913	chr15_64142083_+	0.000154248833818317	0.367823712126517	.	.	.	.
SKCM	CAediting_1048913	chr15_64142083_+	0.000377382270276069	0.298444181504101	.	.	.	.
SARC	CAediting_1048913	chr15_64142083_+	0.0165674874158003	0.270598874741548	.	.	.	.
BRCA	CAediting_1048916	chr15_64142130_+	0.0228526258692874	0.146877227814874	.	.	.	.
SKCM	CAediting_1048920	chr15_64142174_+	0.0288721923179036	0.30323327953704	.	.	.	.

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Relation with cancer stages for SNX1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_1048913	chr15_64142083_+	0.00681976402753916	0.191220782878269
KIRC	pathologic_stage	CAediting_1048931	chr15_64142243_+	0.00778125912422949	0.161951018721367
TGCT	clinical_stage	CAediting_1048931	chr15_64142243_+	0.0270774713572051	0.403379448389215
THCA	pathologic_stage	CAediting_1048913	chr15_64142083_+	0.0206333150495253	0.239746438829893

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Relation with survival for SNX1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
ESCA	CAediting_1048880	chr15_64140645_+	0.0127765186713938	0.0259251	0.00279728
OV	CAediting_1048904	chr15_64140819_+	0.00996804815161934	0.00677742	17192.8
PAAD	CAediting_1048931	chr15_64142243_+	0.0126342931574756	0.0365071	0.000110746

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RelatedDrugs for SNX1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SNX1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene