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Editing gene: SNAPC1 (CAeditome ID:6617)

Gene summary for SNAPC1

Gene summary

Gene information	Gene symbol	SNAPC1
	Gene ID	6617
	Gene name	small nuclear RNA activating complex polypeptide 1
	Synonyms	PTFgamma\|SNAP43
	Cytomap	14q23.2
	Type of gene	protein-coding
	Description	snRNA-activating protein complex subunit 1PSE-binding factor subunit gammaPTF subunit gammaSNAPc 43 kDa subunitSNAPc subunit 1proximal sequence element-binding transcription factor subunit gammasmall nuclear RNA activating complex, polypeptide 1, 43
	Modification date	20210518
	UniProtAcc	Q16533
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SNAPC1	GO:0005654	snRNA-activating protein complex subunit 1	0000052
SNAPC1	GO:0005730	snRNA-activating protein complex subunit 1	0000052

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RNA A-to-I events for SNAPC1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000023608.4

RNA A-to-I editing events in Cancer.

CAediting_995980(61781328, +), CAediting_995981(61781338, +), CAediting_995982(61781370, +), CAediting_995983(61782724, +), CAediting_995984(61783293, +), CAediting_995985(61788959, +), CAediting_995986(61788977, +), CAediting_995987(61790397, +), CAediting_995988(61790573, +), CAediting_995989(61790598, +), CAediting_995990(61790611, +), CAediting_995991(61791593, +), CAediting_995992(61791641, +), CAediting_995993(61791648, +), CAediting_995994(61791649, +), CAediting_995995(61791684, +), CAediting_995996(61791687, +), CAediting_995997(61791690, +), CAediting_995998(61791693, +), CAediting_995999(61791699, +), CAediting_996000(61791728, +), CAediting_996001(61791768, +), CAediting_996002(61791769, +), CAediting_996003(61792035, +), CAediting_996004(61792044, +), CAediting_996005(61792052, +), CAediting_996006(61795885, +), CAediting_996007(61795888, +), CAediting_996008(61795894, +), CAediting_996009(61795903, +), CAediting_996010(61795928, +), CAediting_996011(61795929, +), CAediting_996012(61795956, +), CAediting_996013(61795959, +), CAediting_996014(61796058, +), CAediting_996015(61796059, +), CAediting_996016(61796060, +), CAediting_996017(61796080, +), CAediting_996018(61796081, +), CAediting_996019(61796086, +), CAediting_996020(61796116, +), CAediting_996021(61796119, +), CAediting_996022(61796127, +), CAediting_996023(61796147, +), CAediting_996024(61796148, +), CAediting_996025(61796152, +), CAediting_996026(61796156, +), CAediting_996027(61796158, +), CAediting_996028(61796192, +), CAediting_996029(61796214, +), CAediting_996030(61796215, +), CAediting_996031(61796224, +), CAediting_996032(61796232, +), CAediting_996033(61796237, +), CAediting_996034(61796256, +), CAediting_996035(61796260, +), CAediting_996036(61796264, +), CAediting_996037(61796279, +), CAediting_996038(61796284, +), CAediting_996039(61796298, +), CAediting_996040(61796309, +),

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RNA editing positional annotations for SNAPC1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_995980	chr14_61781328_+	intronic
CAediting_995981	chr14_61781338_+	intronic
CAediting_995982	chr14_61781370_+	intronic
CAediting_995983	chr14_61782724_+	intronic
CAediting_995984	chr14_61783293_+	intronic
CAediting_995985	chr14_61788959_+	intronic
CAediting_995986	chr14_61788977_+	intronic
CAediting_995987	chr14_61790397_+	intronic
CAediting_995988	chr14_61790573_+	intronic
CAediting_995989	chr14_61790598_+	intronic
CAediting_995990	chr14_61790611_+	intronic
CAediting_995991	chr14_61791593_+	intronic
CAediting_995992	chr14_61791641_+	intronic
CAediting_995993	chr14_61791648_+	intronic
CAediting_995994	chr14_61791649_+	intronic
CAediting_995995	chr14_61791684_+	intronic
CAediting_995996	chr14_61791687_+	intronic
CAediting_995997	chr14_61791690_+	intronic
CAediting_995998	chr14_61791693_+	intronic
CAediting_995999	chr14_61791699_+	intronic
CAediting_996000	chr14_61791728_+	intronic
CAediting_996001	chr14_61791768_+	intronic
CAediting_996002	chr14_61791769_+	intronic
CAediting_996003	chr14_61792035_+	intronic
CAediting_996004	chr14_61792044_+	intronic
CAediting_996005	chr14_61792052_+	intronic
CAediting_996006	chr14_61795885_+	UTR3
CAediting_996007	chr14_61795888_+	UTR3
CAediting_996008	chr14_61795894_+	UTR3
CAediting_996009	chr14_61795903_+	UTR3
CAediting_996010	chr14_61795928_+	UTR3
CAediting_996011	chr14_61795929_+	UTR3
CAediting_996012	chr14_61795956_+	UTR3
CAediting_996013	chr14_61795959_+	UTR3
CAediting_996014	chr14_61796058_+	UTR3
CAediting_996015	chr14_61796059_+	UTR3
CAediting_996016	chr14_61796060_+	UTR3
CAediting_996017	chr14_61796080_+	UTR3
CAediting_996018	chr14_61796081_+	UTR3
CAediting_996019	chr14_61796086_+	UTR3
CAediting_996020	chr14_61796116_+	UTR3
CAediting_996021	chr14_61796119_+	UTR3
CAediting_996022	chr14_61796127_+	UTR3
CAediting_996023	chr14_61796147_+	UTR3
CAediting_996024	chr14_61796148_+	UTR3
CAediting_996025	chr14_61796152_+	UTR3
CAediting_996026	chr14_61796156_+	UTR3
CAediting_996027	chr14_61796158_+	UTR3
CAediting_996028	chr14_61796192_+	UTR3
CAediting_996029	chr14_61796214_+	UTR3
CAediting_996030	chr14_61796215_+	UTR3
CAediting_996031	chr14_61796224_+	UTR3
CAediting_996032	chr14_61796232_+	UTR3
CAediting_996033	chr14_61796237_+	UTR3
CAediting_996034	chr14_61796256_+	UTR3
CAediting_996035	chr14_61796260_+	UTR3
CAediting_996036	chr14_61796264_+	UTR3
CAediting_996037	chr14_61796279_+	UTR3
CAediting_996038	chr14_61796284_+	UTR3
CAediting_996039	chr14_61796298_+	UTR3
CAediting_996040	chr14_61796309_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_995980	chr14_61781328_+	SINE	Alu	AluY
CAediting_995981	chr14_61781338_+	SINE	Alu	AluY
CAediting_995982	chr14_61781370_+	SINE	Alu	AluY
CAediting_995983	chr14_61782724_+	SINE	Alu	AluSz
CAediting_995984	chr14_61783293_+	SINE	Alu	AluSq2
CAediting_995985	chr14_61788959_+	SINE	Alu	AluSx4
CAediting_995986	chr14_61788977_+	SINE	Alu	AluSx4
CAediting_995987	chr14_61790397_+	SINE	Alu	AluSz
CAediting_995988	chr14_61790573_+	SINE	Alu	AluSz
CAediting_995989	chr14_61790598_+	SINE	Alu	AluSz
CAediting_995990	chr14_61790611_+	SINE	Alu	AluSz
CAediting_995991	chr14_61791593_+	SINE	Alu	AluSz
CAediting_995992	chr14_61791641_+	SINE	Alu	AluSz
CAediting_995993	chr14_61791648_+	SINE	Alu	AluSz
CAediting_995994	chr14_61791649_+	SINE	Alu	AluSz
CAediting_995995	chr14_61791684_+	SINE	Alu	AluSz
CAediting_995996	chr14_61791687_+	SINE	Alu	AluSz
CAediting_995997	chr14_61791690_+	SINE	Alu	AluSz
CAediting_995998	chr14_61791693_+	SINE	Alu	AluSz
CAediting_995999	chr14_61791699_+	SINE	Alu	AluSz
CAediting_996000	chr14_61791728_+	SINE	Alu	AluSz
CAediting_996001	chr14_61791768_+	SINE	Alu	AluSz
CAediting_996002	chr14_61791769_+	SINE	Alu	AluSz
CAediting_996003	chr14_61792035_+	SINE	Alu	AluSx3
CAediting_996004	chr14_61792044_+	SINE	Alu	AluSx3
CAediting_996005	chr14_61792052_+	SINE	Alu	AluSx3
CAediting_996006	chr14_61795885_+	SINE	Alu	FLAM_C
CAediting_996007	chr14_61795888_+	SINE	Alu	FLAM_C
CAediting_996008	chr14_61795894_+	SINE	Alu	FLAM_C
CAediting_996009	chr14_61795903_+	SINE	Alu	FLAM_C
CAediting_996010	chr14_61795928_+	SINE	Alu	FLAM_C
CAediting_996011	chr14_61795929_+	SINE	Alu	FLAM_C
CAediting_996012	chr14_61795956_+	SINE	Alu	FLAM_C
CAediting_996013	chr14_61795959_+	SINE	Alu	FLAM_C
CAediting_996017	chr14_61796080_+	SINE	Alu	AluY
CAediting_996018	chr14_61796081_+	SINE	Alu	AluY
CAediting_996019	chr14_61796086_+	SINE	Alu	AluY
CAediting_996020	chr14_61796116_+	SINE	Alu	AluY
CAediting_996021	chr14_61796119_+	SINE	Alu	AluY
CAediting_996022	chr14_61796127_+	SINE	Alu	AluY
CAediting_996023	chr14_61796147_+	SINE	Alu	AluY
CAediting_996024	chr14_61796148_+	SINE	Alu	AluY
CAediting_996025	chr14_61796152_+	SINE	Alu	AluY
CAediting_996026	chr14_61796156_+	SINE	Alu	AluY
CAediting_996027	chr14_61796158_+	SINE	Alu	AluY
CAediting_996028	chr14_61796192_+	SINE	Alu	AluY
CAediting_996029	chr14_61796214_+	SINE	Alu	AluY
CAediting_996030	chr14_61796215_+	SINE	Alu	AluY
CAediting_996031	chr14_61796224_+	SINE	Alu	AluY
CAediting_996032	chr14_61796232_+	SINE	Alu	AluY
CAediting_996033	chr14_61796237_+	SINE	Alu	AluY
CAediting_996034	chr14_61796256_+	SINE	Alu	AluY
CAediting_996035	chr14_61796260_+	SINE	Alu	AluY
CAediting_996036	chr14_61796264_+	SINE	Alu	AluY
CAediting_996037	chr14_61796279_+	SINE	Alu	AluY
CAediting_996038	chr14_61796284_+	SINE	Alu	AluY
CAediting_996039	chr14_61796298_+	SINE	Alu	AluY
CAediting_996040	chr14_61796309_+	SINE	Alu	AluY

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RNA A-to-I editing events in the alternative splicing sites for SNAPC1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000023608.4.SNAPC1.

Correlation between RNA A-to-I editing and PSI for ENSG00000023608.4.SNAPC1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNAPC1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ESCA.CAediting_996008.ENSG00000023608.SNAPC1.png
Soverview

TGCT.CAediting_996008.ENSG00000023608.SNAPC1.png
Soverview

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Protein coding region RNA A-to-I editings for SNAPC1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SNAPC1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_996012	chr14_61795956_+	ENSG00000023608.4	ENST00000216294	hsa-miR-3189-3p	61795950	61795956	7mer-m8	61795938	61795957	149.00	-25.49
CAediting_996012	chr14_61795956_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6813-3p	61795951	61795958	8mer-1a	61795938	61795958	140.00	-11.56
CAediting_996014	chr14_61796058_+	ENSG00000023608.4	ENST00000216294	hsa-miR-607	61796053	61796059	7mer-m8	61796040	61796060	150.00	-11.89
CAediting_996015	chr14_61796059_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4799-5p	61796053	61796059	7mer-m8	61796035	61796060	146.00	-12.59
CAediting_996015	chr14_61796059_+	ENSG00000023608.4	ENST00000216294	hsa-miR-520f-5p	61796054	61796060	7mer-m8	61796040	61796061	140.00	-8.50
CAediting_996015	chr14_61796059_+	ENSG00000023608.4	ENST00000216294	hsa-miR-618	61796056	61796062	7mer-m8	61796042	61796063	151.00	-15.05
CAediting_996017	chr14_61796080_+	ENSG00000023608.4	ENST00000216294	hsa-miR-513a-5p	61796074	61796080	7mer-m8	61796064	61796081	148.00	-13.25
CAediting_996017	chr14_61796080_+	ENSG00000023608.4	ENST00000216294	hsa-miR-513a-5p	61796074	61796080	7mer-m8	61796064	61796081	148.00	-13.25
CAediting_996017	chr14_61796080_+	ENSG00000023608.4	ENST00000216294	hsa-miR-638	61796079	61796085	7mer-1a	61796061	61796085	156.00	-36.90
CAediting_996018	chr14_61796081_+	ENSG00000023608.4	ENST00000216294	hsa-miR-8052	61796079	61796085	7mer-1a	61796067	61796085	143.00	-23.66
CAediting_996032	chr14_61796232_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6778-3p	61796227	61796233	7mer-m8	61796215	61796234	141.00	-15.45
CAediting_996033	chr14_61796237_+	ENSG00000023608.4	ENST00000216294	hsa-miR-1913	61796235	61796241	7mer-m8	61796215	61796242	143.00	-27.18
CAediting_996011	chr14_61795929_+	ENSG00000023608.4	ENST00000216294	hsa-miR-1199-5p	61795922	61795928	7mer-m8	61795910	61795929	156.00	-29.18
CAediting_996011	chr14_61795929_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4293	61795925	61795932	8mer-1a	61795913	61795932	148.00	-16.98
CAediting_996011	chr14_61795929_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6751-3p	61795922	61795928	7mer-m8	61795909	61795929	141.00	-13.95
CAediting_996013	chr14_61795959_+	ENSG00000023608.4	ENST00000216294	hsa-miR-383-3p	61795955	61795961	7mer-m8	61795944	61795962	140.00	-14.49
CAediting_996022	chr14_61796127_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4732-3p	61796120	61796126	7mer-m8	61796109	61796127	156.00	-22.27
CAediting_996024	chr14_61796148_+	ENSG00000023608.4	ENST00000216294	hsa-miR-449c-3p	61796143	61796149	7mer-m8	61796128	61796150	160.00	-14.47
CAediting_996024	chr14_61796148_+	ENSG00000023608.4	ENST00000216294	hsa-miR-5008-3p	61796146	61796152	7mer-m8	61796129	61796153	145.00	-20.11
CAediting_996024	chr14_61796148_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6737-3p	61796146	61796152	7mer-m8	61796130	61796153	147.00	-14.68
CAediting_996024	chr14_61796148_+	ENSG00000023608.4	ENST00000216294	hsa-miR-7157-3p	61796146	61796152	7mer-m8	61796133	61796153	153.00	-15.91
CAediting_996024	chr14_61796148_+	ENSG00000023608.4	ENST00000216294	hsa-miR-8086	61796142	61796149	8mer-1a	61796129	61796149	149.00	-17.42
CAediting_996029	chr14_61796214_+	ENSG00000023608.4	ENST00000216294	hsa-miR-513a-5p	61796208	61796214	7mer-m8	61796198	61796215	140.00	-18.01
CAediting_996029	chr14_61796214_+	ENSG00000023608.4	ENST00000216294	hsa-miR-513a-5p	61796208	61796214	7mer-m8	61796198	61796215	140.00	-18.01
CAediting_996029	chr14_61796214_+	ENSG00000023608.4	ENST00000216294	hsa-miR-638	61796213	61796219	7mer-1a	61796195	61796219	155.00	-34.54
CAediting_996030	chr14_61796215_+	ENSG00000023608.4	ENST00000216294	hsa-miR-8052	61796213	61796219	7mer-1a	61796199	61796219	141.00	-23.11
CAediting_996036	chr14_61796264_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6075	61796261	61796268	8mer-1a	61796248	61796268	141.00	-18.89
CAediting_996040	chr14_61796309_+	ENSG00000023608.4	ENST00000216294	hsa-miR-7109-3p	61796305	61796311	7mer-m8	61796290	61796312	148.00	-22.49
CAediting_996020	chr14_61796116_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10401-3p	61796115	61796120	6mer	61796102	61796121	141.00	-37.40
CAediting_996020	chr14_61796116_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10401-3p	61796115	61796120	6mer	61796102	61796121	141.00	-37.40
CAediting_996020	chr14_61796116_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10401-3p	61796115	61796120	6mer	61796102	61796121	141.00	-37.40
CAediting_996020	chr14_61796116_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10401-3p	61796115	61796120	6mer	61796102	61796121	141.00	-37.40
CAediting_996023	chr14_61796147_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4704-3p	61796140	61796147	8mer-1a	61796123	61796147	149.00	-18.13
CAediting_996023	chr14_61796147_+	ENSG00000023608.4	ENST00000216294	hsa-miR-592	61796145	61796151	7mer-m8	61796132	61796152	162.00	-18.88
CAediting_996026	chr14_61796156_+	ENSG00000023608.4	ENST00000216294	hsa-miR-23a-5p	61796154	61796160	7mer-m8	61796139	61796161	144.00	-19.41
CAediting_996026	chr14_61796156_+	ENSG00000023608.4	ENST00000216294	hsa-miR-23b-5p	61796154	61796160	7mer-m8	61796140	61796161	140.00	-14.79
CAediting_996026	chr14_61796156_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6509-3p	61796150	61796157	8mer-1a	61796136	61796157	140.00	-13.78
CAediting_996027	chr14_61796158_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4508	61796156	61796162	7mer-m8	61796147	61796163	140.00	-21.16
CAediting_996027	chr14_61796158_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6837-3p	61796151	61796157	7mer-m8	61796133	61796158	158.00	-17.92
CAediting_996031	chr14_61796224_+	ENSG00000023608.4	ENST00000216294	hsa-miR-1207-3p	61796217	61796223	7mer-m8	61796207	61796224	140.00	-12.56
CAediting_996031	chr14_61796224_+	ENSG00000023608.4	ENST00000216294	hsa-miR-646	61796219	61796225	7mer-m8	61796208	61796226	145.00	-14.99
CAediting_996034	chr14_61796256_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10400-3p	61796253	61796259	7mer-m8	61796239	61796260	143.00	-20.37
CAediting_996034	chr14_61796256_+	ENSG00000023608.4	ENST00000216294	hsa-miR-342-3p	61796249	61796255	7mer-m8	61796234	61796256	140.00	-15.26
CAediting_996034	chr14_61796256_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4437	61796252	61796259	8mer-1a	61796239	61796259	141.00	-17.33
CAediting_996034	chr14_61796256_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4674	61796253	61796259	7mer-m8	61796240	61796260	142.00	-22.40
CAediting_996035	chr14_61796260_+	ENSG00000023608.4	ENST00000216294	hsa-miR-181d-3p	61796256	61796263	8mer-1a	61796243	61796263	140.00	-19.13

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_996017	chr14_61796080_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10399-5p	61796075	61796081	7mer-m8	61796059	61796082	149	-13.44
CAediting_996018	chr14_61796081_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10399-5p	61796075	61796081	7mer-m8	61796059	61796082	149	-13.44
CAediting_996029	chr14_61796214_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10399-5p	61796209	61796215	7mer-m8	61796197	61796216	141	-12.5
CAediting_996030	chr14_61796215_+	ENSG00000023608.4	ENST00000216294	hsa-miR-10399-5p	61796209	61796215	7mer-m8	61796197	61796216	141	-12.5
CAediting_996035	chr14_61796260_+	ENSG00000023608.4	ENST00000216294	hsa-miR-1304-3p	61796258	61796264	7mer-m8	61796246	61796265	149	-16.26
CAediting_996036	chr14_61796264_+	ENSG00000023608.4	ENST00000216294	hsa-miR-1304-3p	61796258	61796264	7mer-m8	61796246	61796265	149	-16.26
CAediting_996006	chr14_61795885_+	ENSG00000023608.4	ENST00000216294	hsa-miR-136-5p	61795880	61795885	6mer	61795864	61795886	143	-14.72
CAediting_996027	chr14_61796158_+	ENSG00000023608.4	ENST00000216294	hsa-miR-193b-5p	61796155	61796161	7mer-m8	61796141	61796162	142	-19.29
CAediting_996023	chr14_61796147_+	ENSG00000023608.4	ENST00000216294	hsa-miR-3152-3p	61796144	61796151	8mer-1a	61796130	61796151	140	-14.51
CAediting_996024	chr14_61796148_+	ENSG00000023608.4	ENST00000216294	hsa-miR-3152-3p	61796144	61796151	8mer-1a	61796130	61796151	140	-14.51
CAediting_996039	chr14_61796298_+	ENSG00000023608.4	ENST00000216294	hsa-miR-367-5p	61796295	61796302	8mer-1a	61796281	61796302	143	-12.17
CAediting_996036	chr14_61796264_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4284	61796260	61796266	7mer-m8	61796246	61796267	143	-19.92
CAediting_996009	chr14_61795903_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4293	61795900	61795906	7mer-m8	61795890	61795907	144	-18.9
CAediting_996013	chr14_61795959_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4712-5p	61795956	61795962	7mer-m8	61795942	61795963	140	-14.66
CAediting_996028	chr14_61796192_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4794	61796186	61796192	7mer-m8	61796171	61796193	142	-15.06
CAediting_996018	chr14_61796081_+	ENSG00000023608.4	ENST00000216294	hsa-miR-5089-5p	61796079	61796085	7mer-m8	61796066	61796086	152	-14.94
CAediting_996019	chr14_61796086_+	ENSG00000023608.4	ENST00000216294	hsa-miR-5089-5p	61796079	61796085	7mer-m8	61796066	61796086	152	-14.94
CAediting_996030	chr14_61796215_+	ENSG00000023608.4	ENST00000216294	hsa-miR-5089-5p	61796213	61796219	7mer-m8	61796200	61796220	144	-13.27
CAediting_996037	chr14_61796279_+	ENSG00000023608.4	ENST00000216294	hsa-miR-5693	61796275	61796281	7mer-m8	61796262	61796282	143	-19.73
CAediting_996017	chr14_61796080_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6504-3p	61796075	61796081	7mer-m8	61796060	61796082	149	-13.99
CAediting_996018	chr14_61796081_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6504-3p	61796075	61796081	7mer-m8	61796060	61796082	149	-13.99
CAediting_996029	chr14_61796214_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6504-3p	61796209	61796215	7mer-m8	61796195	61796216	148	-14.75
CAediting_996030	chr14_61796215_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6504-3p	61796209	61796215	7mer-m8	61796195	61796216	148	-14.75
CAediting_996019	chr14_61796086_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6506-5p	61796080	61796086	7mer-m8	61796065	61796087	144	-16.07
CAediting_996028	chr14_61796192_+	ENSG00000023608.4	ENST00000216294	hsa-miR-664a-5p	61796186	61796192	7mer-m8	61796170	61796193	141	-13.79
CAediting_996033	chr14_61796237_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6787-3p	61796231	61796237	7mer-m8	61796217	61796238	143	-18.94
CAediting_996021	chr14_61796119_+	ENSG00000023608.4	ENST00000216294	hsa-miR-6790-3p	61796116	61796123	8mer-1a	61796103	61796123	155	-25.17
CAediting_996017	chr14_61796080_+	ENSG00000023608.4	ENST00000216294	hsa-miR-7151-3p	61796073	61796080	8mer-1a	61796059	61796080	149	-15.45
CAediting_996029	chr14_61796214_+	ENSG00000023608.4	ENST00000216294	hsa-miR-7151-3p	61796207	61796214	8mer-1a	61796194	61796214	140	-12.68
CAediting_996039	chr14_61796298_+	ENSG00000023608.4	ENST00000216294	hsa-miR-744-3p	61796294	61796300	7mer-m8	61796280	61796301	140	-14.79
CAediting_996013	chr14_61795959_+	ENSG00000023608.4	ENST00000216294	hsa-miR-770-5p	61795956	61795962	7mer-m8	61795941	61795963	140	-18.17
CAediting_996037	chr14_61796279_+	ENSG00000023608.4	ENST00000216294	hsa-miR-891a-3p	61796273	61796279	7mer-m8	61796258	61796280	152	-17.46
CAediting_996025	chr14_61796152_+	ENSG00000023608.4	ENST00000216294	hsa-miR-892a	61796147	61796153	7mer-m8	61796134	61796154	140	-16.62

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000023608.4	ENST00000216294	hsa-miR-200b-3p	61796084	61796090	7mer-m8	61796070	61796091	140	-10.87
CAediting_688081	chr9_63819627_+	ENSG00000023608.4	ENST00000216294	hsa-miR-4477b	61795868	61795874	7mer-m8	61795854	61795875	142	-10.16
CAediting_1229414	chr17_67471546_+	ENSG00000023608.4	ENST00000216294	hsa-miR-548aa	61795906	61795912	7mer-m8	61795889	61795913	140	-12.63

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000023608.4	ENST00000216294	hsa-miR-200b-3p	61795067	61795074	8mer-1a	61795053	61795074	144	-13.36
CAediting_117844	chr1_162342605_+	ENSG00000023608.4	ENST00000216294	hsa-miR-556-3p	61795303	61795309	7mer-m8	61795289	61795310	145	-8

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SNAPC1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SNAPC1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_996008	chr14_61795894_+	2.31957600245614e-14	0.486626818555198	.	.	.	.
LGG	CAediting_996008	chr14_61795894_+	0.0298716540829112	0.109991949759905	.	.	0.000369889455152506	0.179413039037347
BRCA	CAediting_996008	chr14_61795894_+	1.90725539778117e-16	0.37276012139451	.	.	.	.
CESC	CAediting_996008	chr14_61795894_+	6.17885591229889e-07	0.329330972499932	.	.	.	.
LUAD	CAediting_996008	chr14_61795894_+	1.24047092828318e-05	0.286194470783048	.	.	.	.
LUSC	CAediting_996008	chr14_61795894_+	3.59503034400635e-13	0.361005044195979	.	.	.	.
GBM	CAediting_996008	chr14_61795894_+	1.41098521844951e-05	0.354364154439987	.	.	.	.
PRAD	CAediting_996008	chr14_61795894_+	7.95503969849814e-05	0.223615909414003	.	.	.	.
HNSC	CAediting_996008	chr14_61795894_+	4.65711727366307e-09	0.310108648397356	0.00588212274562514	0.148650374447705	.	.
KICH	CAediting_996008	chr14_61795894_+	0.00129091115962883	0.426750810785306	.	.	.	.
THCA	CAediting_996008	chr14_61795894_+	2.68357361496039e-07	0.246408478577677	.	.	.	.
KIRC	CAediting_996008	chr14_61795894_+	0.013539102163465	0.128274253961726	.	.	.	.
UCEC	CAediting_996008	chr14_61795894_+	2.37470247879818e-11	0.48490717618607	.	.	.	.
ESCA	CAediting_996008	chr14_61795894_+	0.0362985274160884	0.227461405333126	.	.	.	.
OV	CAediting_996008	chr14_61795894_+	4.44013634885657e-05	0.293189322679481	.	.	.	.
PAAD	CAediting_996008	chr14_61795894_+	0.0177617286618152	0.237840109331396	.	.	.	.
PCPG	CAediting_996008	chr14_61795894_+	9.04401342868126e-05	0.348304918818692	0.000861067546805295	0.299082854754944	.	.
SKCM	CAediting_996008	chr14_61795894_+	7.75945695727828e-12	0.422203814492641	.	.	.	.
MESO	CAediting_996008	chr14_61795894_+	0.00471366735877253	0.369167723451193	0.0481974243980336	0.262879329082604	.	.
SARC	CAediting_996008	chr14_61795894_+	1.82310167782208e-07	0.374086516960594	.	.	.	.
TGCT	CAediting_996008	chr14_61795894_+	3.53680520551314e-08	0.484632833620822	.	.	.	.
THYM	CAediting_996008	chr14_61795894_+	4.43334378512357e-07	0.452090186409675	.	.	0.0326747238185342	0.200236056431267
BLCA	CAediting_996016	chr14_61796060_+	0.0303626972149054	0.257202144643373	0.00381605362217441	0.339116630298762	.	.
BRCA	CAediting_996016	chr14_61796060_+	0.0168250191324682	0.212641206006955	.	.	.	.
LUAD	CAediting_996016	chr14_61796060_+	0.020048199140831	0.275505478063697	.	.	.	.
LUSC	CAediting_996016	chr14_61796060_+	0.00364772593004354	0.34303438511155	.	.	.	.
THCA	CAediting_996016	chr14_61796060_+	0.036402119356879	0.230069983337308	.	.	.	.
BLCA	CAediting_996018	chr14_61796081_+	0.0324261023729435	0.244067609257894	.	.	.	.
BRCA	CAediting_996018	chr14_61796081_+	0.00269679321272424	0.271568108645991	.	.	.	.
CESC	CAediting_996018	chr14_61796081_+	0.00201568942162123	0.368048971149631	.	.	.	.
LUAD	CAediting_996018	chr14_61796081_+	0.0327337685853955	0.237544067621024	.	.	.	.
HNSC	CAediting_996018	chr14_61796081_+	0.0450398647855017	0.178895406362812	.	.	.	.
THCA	CAediting_996018	chr14_61796081_+	.	.	.	.	0.0305190003494464	0.297480817948959
ESCA	CAediting_996018	chr14_61796081_+	0.0491393351433341	0.266582459823831	.	.	.	.
OV	CAediting_996018	chr14_61796081_+	0.0113077780259408	0.252362816020461	.	.	.	.
TGCT	CAediting_996018	chr14_61796081_+	0.0221991287024648	0.310736441938372	.	.	.	.

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Relation with cancer stages for SNAPC1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
HNSC	clinical_stage	CAediting_996008	chr14_61795894_+	0.00560306420746861	0.151950886432157
KIRC	pathologic_stage	CAediting_996008	chr14_61795894_+	0.006467748941654	0.141523589432053
KIRP	pathologic_stage	CAediting_996008	chr14_61795894_+	0.0216195121770858	0.184405929280123
PAAD	pathologic_stage	CAediting_996008	chr14_61795894_+	0.0476290991872551	0.201649011707419

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Relation with survival for SNAPC1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
PAAD	CAediting_996008	chr14_61795894_+	0.0107779539024109	0.0490903	8.68735

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RelatedDrugs for SNAPC1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SNAPC1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene