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Editing gene: CENPBD1P1 (CAeditome ID:65996)

Gene summary for CENPBD1P1

Gene summary

Gene information	Gene symbol	CENPBD1P1
	Gene ID	65996
	Gene name	CENPB DNA-binding domains containing 1 pseudogene 1
	Synonyms	-
	Cytomap	19q13.43
	Type of gene	pseudo
	Description	CENPBD1 pseudogene 1
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for CENPBD1P1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000213753.9

RNA A-to-I editing events in Cancer.

CAediting_1397910(58574507, +), CAediting_1397911(58574514, +), CAediting_1397912(58574543, +), CAediting_1397913(58574550, +), CAediting_1397914(58574568, +), CAediting_1397915(58574587, +), CAediting_1397916(58574596, +), CAediting_1397917(58574622, +), CAediting_1397918(58574624, +), CAediting_1397919(58574674, +), CAediting_1397920(58574687, +), CAediting_1397921(58574689, +), CAediting_1397922(58580252, +), CAediting_1397923(58582219, +), CAediting_1397924(58582389, +), CAediting_1397925(58582393, +), CAediting_1397926(58582444, +), CAediting_1397927(58582450, +), CAediting_1397928(58582474, +), CAediting_1397929(58582487, +), CAediting_1397930(58582499, +), CAediting_1397931(58582509, +), CAediting_1397932(58582511, +), CAediting_1397933(58582522, +), CAediting_1397934(58582525, +), CAediting_1397935(58582552, +), CAediting_1397936(58582555, +), CAediting_1397937(58582577, +), CAediting_1397938(58582581, +), CAediting_1397939(58582609, +), CAediting_1397940(58582613, +), CAediting_1397941(58582630, +), CAediting_1397942(58582631, +), CAediting_1397943(58582632, +), CAediting_1397944(58584080, +), CAediting_1397945(58584088, +), CAediting_1397946(58584089, +), CAediting_1397947(58584097, +), CAediting_1397948(58584105, +), CAediting_1397949(58584111, +), CAediting_1397950(58584118, +), CAediting_1397951(58584123, +), CAediting_1397952(58584129, +), CAediting_1397953(58584134, +), CAediting_1397954(58584137, +), CAediting_1397955(58584158, +), CAediting_1397956(58584162, +), CAediting_1397957(58584166, +), CAediting_1397958(58584188, +), CAediting_1397959(58584190, +), CAediting_1397960(58584191, +), CAediting_1397961(58584192, +), CAediting_1397962(58584196, +), CAediting_1397963(58584197, +), CAediting_1397964(58584198, +), CAediting_1397965(58584199, +), CAediting_1397966(58584202, +), CAediting_1397967(58584206, +), CAediting_1397968(58584218, +), CAediting_1397969(58584222, +), CAediting_1397970(58584228, +), CAediting_1397971(58585170, +), CAediting_1397972(58585180, +), CAediting_1397973(58585213, +), CAediting_1397974(58585218, +), CAediting_1397975(58585242, +),

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RNA editing positional annotations for CENPBD1P1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1397910	chr19_58574507_+	ncRNA_exonic
CAediting_1397911	chr19_58574514_+	ncRNA_exonic
CAediting_1397912	chr19_58574543_+	ncRNA_exonic
CAediting_1397913	chr19_58574550_+	ncRNA_exonic
CAediting_1397914	chr19_58574568_+	ncRNA_exonic
CAediting_1397915	chr19_58574587_+	ncRNA_exonic
CAediting_1397916	chr19_58574596_+	ncRNA_exonic
CAediting_1397917	chr19_58574622_+	ncRNA_exonic
CAediting_1397918	chr19_58574624_+	ncRNA_exonic
CAediting_1397919	chr19_58574674_+	ncRNA_exonic
CAediting_1397920	chr19_58574687_+	ncRNA_exonic
CAediting_1397921	chr19_58574689_+	ncRNA_exonic
CAediting_1397922	chr19_58580252_+	ncRNA_intronic
CAediting_1397923	chr19_58582219_+	ncRNA_exonic
CAediting_1397924	chr19_58582389_+	ncRNA_exonic
CAediting_1397925	chr19_58582393_+	ncRNA_exonic
CAediting_1397926	chr19_58582444_+	ncRNA_exonic
CAediting_1397927	chr19_58582450_+	ncRNA_exonic
CAediting_1397928	chr19_58582474_+	ncRNA_exonic
CAediting_1397929	chr19_58582487_+	ncRNA_exonic
CAediting_1397930	chr19_58582499_+	ncRNA_exonic
CAediting_1397931	chr19_58582509_+	ncRNA_exonic
CAediting_1397932	chr19_58582511_+	ncRNA_exonic
CAediting_1397933	chr19_58582522_+	ncRNA_exonic
CAediting_1397934	chr19_58582525_+	ncRNA_exonic
CAediting_1397935	chr19_58582552_+	ncRNA_exonic
CAediting_1397936	chr19_58582555_+	ncRNA_exonic
CAediting_1397937	chr19_58582577_+	ncRNA_exonic
CAediting_1397938	chr19_58582581_+	ncRNA_exonic
CAediting_1397939	chr19_58582609_+	ncRNA_exonic
CAediting_1397940	chr19_58582613_+	ncRNA_exonic
CAediting_1397941	chr19_58582630_+	ncRNA_exonic
CAediting_1397942	chr19_58582631_+	ncRNA_exonic
CAediting_1397943	chr19_58582632_+	ncRNA_exonic
CAediting_1397944	chr19_58584080_+	ncRNA_exonic
CAediting_1397945	chr19_58584088_+	ncRNA_exonic
CAediting_1397946	chr19_58584089_+	ncRNA_exonic
CAediting_1397947	chr19_58584097_+	ncRNA_exonic
CAediting_1397948	chr19_58584105_+	ncRNA_exonic
CAediting_1397949	chr19_58584111_+	ncRNA_exonic
CAediting_1397950	chr19_58584118_+	ncRNA_exonic
CAediting_1397951	chr19_58584123_+	ncRNA_exonic
CAediting_1397952	chr19_58584129_+	ncRNA_exonic
CAediting_1397953	chr19_58584134_+	ncRNA_exonic
CAediting_1397954	chr19_58584137_+	ncRNA_exonic
CAediting_1397955	chr19_58584158_+	ncRNA_exonic
CAediting_1397956	chr19_58584162_+	ncRNA_exonic
CAediting_1397957	chr19_58584166_+	ncRNA_exonic
CAediting_1397958	chr19_58584188_+	ncRNA_exonic
CAediting_1397959	chr19_58584190_+	ncRNA_exonic
CAediting_1397960	chr19_58584191_+	ncRNA_exonic
CAediting_1397961	chr19_58584192_+	ncRNA_exonic
CAediting_1397962	chr19_58584196_+	ncRNA_exonic
CAediting_1397963	chr19_58584197_+	ncRNA_exonic
CAediting_1397964	chr19_58584198_+	ncRNA_exonic
CAediting_1397965	chr19_58584199_+	ncRNA_exonic
CAediting_1397966	chr19_58584202_+	ncRNA_exonic
CAediting_1397967	chr19_58584206_+	ncRNA_exonic
CAediting_1397968	chr19_58584218_+	ncRNA_exonic
CAediting_1397969	chr19_58584222_+	ncRNA_exonic
CAediting_1397970	chr19_58584228_+	ncRNA_exonic
CAediting_1397971	chr19_58585170_+	ncRNA_intronic
CAediting_1397972	chr19_58585180_+	ncRNA_intronic
CAediting_1397973	chr19_58585213_+	ncRNA_intronic
CAediting_1397974	chr19_58585218_+	ncRNA_intronic
CAediting_1397975	chr19_58585242_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1397910	chr19_58574507_+	SINE	Alu	AluSx
CAediting_1397911	chr19_58574514_+	SINE	Alu	AluSx
CAediting_1397912	chr19_58574543_+	SINE	Alu	AluSx
CAediting_1397913	chr19_58574550_+	SINE	Alu	AluSx
CAediting_1397914	chr19_58574568_+	SINE	Alu	AluSx
CAediting_1397915	chr19_58574587_+	SINE	Alu	AluSx
CAediting_1397916	chr19_58574596_+	SINE	Alu	AluSx
CAediting_1397917	chr19_58574622_+	SINE	Alu	AluSx
CAediting_1397918	chr19_58574624_+	SINE	Alu	AluSx
CAediting_1397919	chr19_58574674_+	SINE	Alu	AluSx
CAediting_1397920	chr19_58574687_+	SINE	Alu	AluSx
CAediting_1397921	chr19_58574689_+	SINE	Alu	AluSx
CAediting_1397922	chr19_58580252_+	SINE	Alu	AluSp
CAediting_1397923	chr19_58582219_+	SINE	Alu	Alu
CAediting_1397924	chr19_58582389_+	SINE	Alu	AluY
CAediting_1397925	chr19_58582393_+	SINE	Alu	AluY
CAediting_1397926	chr19_58582444_+	SINE	Alu	AluY
CAediting_1397927	chr19_58582450_+	SINE	Alu	AluY
CAediting_1397928	chr19_58582474_+	SINE	Alu	AluY
CAediting_1397929	chr19_58582487_+	SINE	Alu	AluY
CAediting_1397930	chr19_58582499_+	SINE	Alu	AluY
CAediting_1397931	chr19_58582509_+	SINE	Alu	AluY
CAediting_1397932	chr19_58582511_+	SINE	Alu	AluY
CAediting_1397933	chr19_58582522_+	SINE	Alu	AluY
CAediting_1397934	chr19_58582525_+	SINE	Alu	AluY
CAediting_1397935	chr19_58582552_+	SINE	Alu	AluY
CAediting_1397936	chr19_58582555_+	SINE	Alu	AluY
CAediting_1397937	chr19_58582577_+	SINE	Alu	AluY
CAediting_1397938	chr19_58582581_+	SINE	Alu	AluY
CAediting_1397939	chr19_58582609_+	SINE	Alu	AluY
CAediting_1397940	chr19_58582613_+	SINE	Alu	AluY
CAediting_1397941	chr19_58582630_+	SINE	Alu	AluY
CAediting_1397942	chr19_58582631_+	SINE	Alu	AluY
CAediting_1397943	chr19_58582632_+	SINE	Alu	AluY
CAediting_1397944	chr19_58584080_+	SINE	Alu	AluJr
CAediting_1397945	chr19_58584088_+	SINE	Alu	AluJr
CAediting_1397946	chr19_58584089_+	SINE	Alu	AluJr
CAediting_1397947	chr19_58584097_+	SINE	Alu	AluJr
CAediting_1397948	chr19_58584105_+	SINE	Alu	AluJr
CAediting_1397949	chr19_58584111_+	SINE	Alu	AluJr
CAediting_1397950	chr19_58584118_+	SINE	Alu	AluJr
CAediting_1397951	chr19_58584123_+	SINE	Alu	AluJr
CAediting_1397952	chr19_58584129_+	SINE	Alu	AluJr
CAediting_1397953	chr19_58584134_+	SINE	Alu	AluJr
CAediting_1397954	chr19_58584137_+	SINE	Alu	AluJr
CAediting_1397955	chr19_58584158_+	SINE	Alu	AluJr
CAediting_1397956	chr19_58584162_+	SINE	Alu	AluJr
CAediting_1397957	chr19_58584166_+	SINE	Alu	AluJr
CAediting_1397958	chr19_58584188_+	SINE	Alu	AluJr
CAediting_1397959	chr19_58584190_+	SINE	Alu	AluJr
CAediting_1397960	chr19_58584191_+	SINE	Alu	AluJr
CAediting_1397961	chr19_58584192_+	SINE	Alu	AluJr
CAediting_1397962	chr19_58584196_+	SINE	Alu	AluJr
CAediting_1397963	chr19_58584197_+	SINE	Alu	AluJr
CAediting_1397964	chr19_58584198_+	SINE	Alu	AluJr
CAediting_1397965	chr19_58584199_+	SINE	Alu	AluJr
CAediting_1397966	chr19_58584202_+	SINE	Alu	AluJr
CAediting_1397967	chr19_58584206_+	SINE	Alu	AluJr
CAediting_1397968	chr19_58584218_+	SINE	Alu	AluJr
CAediting_1397969	chr19_58584222_+	SINE	Alu	AluJr
CAediting_1397970	chr19_58584228_+	SINE	Alu	AluJr
CAediting_1397971	chr19_58585170_+	LTR	ERVK	LTR13A
CAediting_1397972	chr19_58585180_+	SINE	Alu	AluJr
CAediting_1397973	chr19_58585213_+	SINE	Alu	AluJr
CAediting_1397974	chr19_58585218_+	SINE	Alu	AluJr
CAediting_1397975	chr19_58585242_+	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for CENPBD1P1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000213753.9.CENPBD1P1.

Correlation between RNA A-to-I editing and PSI for ENSG00000213753.9.CENPBD1P1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CENPBD1P1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

CESC.CAediting_1397965.ENSG00000213753.CENPBD1P1.png
Soverview

OV.CAediting_1397932.ENSG00000213753.CENPBD1P1.png
Soverview

TGCT.CAediting_1397941.ENSG00000213753.CENPBD1P1.png
Soverview

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Protein coding region RNA A-to-I editings for CENPBD1P1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CENPBD1P1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1306324	chr19_13836464_-	ENSG00000213753.9	ENST00000473164.1	hsa-miR-27a-3p	58575575	58575581	7mer-m8	58575562	58575582	145	-18.8
CAediting_1306324	chr19_13836464_-	ENSG00000213753.9	ENST00000473164.1	hsa-miR-27a-3p	58599118	58599124	7mer-m8	58599105	58599125	154	-22.23
CAediting_1306324	chr19_13836464_-	ENSG00000213753.9	ENST00000487264.4	hsa-miR-27a-3p	58575575	58575581	7mer-m8	58575562	58575582	145	-18.8
CAediting_1306324	chr19_13836464_-	ENSG00000213753.9	ENST00000487264.4	hsa-miR-27a-3p	58599118	58599124	7mer-m8	58599105	58599125	154	-22.23
CAediting_1229415	chr17_67471547_+	ENSG00000213753.9	ENST00000473164.1	hsa-miR-548aa	58586223	58586230	8mer-1a	58586206	58586230	154	-13.58
CAediting_1306323	chr19_13836462_-	ENSG00000213753.9	ENST00000473164.1	hsa-miR-27a-3p	58599222	58599228	7mer-1a	58599207	58599228	143	-20.65
CAediting_604450	chr7_133034877_-	ENSG00000213753.9	ENST00000473164.1	hsa-miR-3654	58599441	58599447	7mer-m8	58599429	58599448	152	-19.49
CAediting_1229415	chr17_67471547_+	ENSG00000213753.9	ENST00000487264.4	hsa-miR-548aa	58586223	58586230	8mer-1a	58586206	58586230	154	-13.58
CAediting_1229415	chr17_67471547_+	ENSG00000213753.9	ENST00000487264.4	hsa-miR-548aa	58591522	58591528	7mer-m8	58591505	58591529	151	-12.12
CAediting_1306323	chr19_13836462_-	ENSG00000213753.9	ENST00000487264.4	hsa-miR-27a-3p	58599222	58599228	7mer-1a	58599207	58599228	143	-20.65
CAediting_604450	chr7_133034877_-	ENSG00000213753.9	ENST00000487264.4	hsa-miR-3654	58599441	58599447	7mer-m8	58599429	58599448	152	-19.49

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1306324	chr19_13836464_-	ENSG00000213753.9	ENST00000473164.1	hsa-miR-27a-3p	58575510	58575516	7mer-m8	58575498	58575517	149	-22.48
CAediting_1306323	chr19_13836462_-	ENSG00000213753.9	ENST00000473164.1	hsa-miR-27a-3p	58575510	58575516	7mer-m8	58575498	58575517	149	-22.48
CAediting_1306324	chr19_13836464_-	ENSG00000213753.9	ENST00000487264.4	hsa-miR-27a-3p	58575510	58575516	7mer-m8	58575498	58575517	149	-22.48
CAediting_1306323	chr19_13836462_-	ENSG00000213753.9	ENST00000487264.4	hsa-miR-27a-3p	58575510	58575516	7mer-m8	58575498	58575517	149	-22.48

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CENPBD1P1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for CENPBD1P1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_1397925	chr19_58582393_+	4.34174039050514e-06	0.350018350860904	.	.	.	.
BRCA	CAediting_1397925	chr19_58582393_+	8.01422004945812e-10	0.285365852825486	.	.	.	.
CESC	CAediting_1397925	chr19_58582393_+	0.0321983112420694	0.266029071509623	.	.	.	.
LUAD	CAediting_1397925	chr19_58582393_+	6.73544955409028e-07	0.409501838130018	.	.	.	.
LUSC	CAediting_1397925	chr19_58582393_+	5.65527621282182e-09	0.480202048918258	.	.	.	.
PRAD	CAediting_1397925	chr19_58582393_+	0.00046616575934614	0.357593108760669	.	.	.	.
STAD	CAediting_1397925	chr19_58582393_+	0.0039186874255867	0.264751133266309	.	.	.	.
THCA	CAediting_1397925	chr19_58582393_+	0.000138575598331275	0.29950835997837	.	.	.	.
UCEC	CAediting_1397925	chr19_58582393_+	0.0168826407628986	0.291022067926753	.	.	.	.
ESCA	CAediting_1397925	chr19_58582393_+	.	.	0.018744606966398	0.324963705276633	.	.
OV	CAediting_1397925	chr19_58582393_+	0.0120216692971132	0.223138199073752	.	.	.	.
SARC	CAediting_1397925	chr19_58582393_+	6.44291571255015e-08	0.639723099849721	.	.	.	.
OV	CAediting_1397935	chr19_58582552_+	0.0494128733458454	0.26627314976086	.	.	.	.
BRCA	CAediting_1397937	chr19_58582577_+	6.45109895742075e-05	0.227101700127239	.	.	.	.
LUSC	CAediting_1397937	chr19_58582577_+	0.00434575932465941	0.354649622541611	.	.	.	.
KIRC	CAediting_1397937	chr19_58582577_+	0.0123054363953058	0.258641240225633	.	.	.	.
OV	CAediting_1397937	chr19_58582577_+	0.00105780372046169	0.263941389886828	0.0157225858341542	0.196268997156873	.	.
BLCA	CAediting_1397941	chr19_58582630_+	0.0317607261907289	0.208746341620338	.	.	.	.
LGG	CAediting_1397941	chr19_58582630_+	1.05604017570752e-09	0.608373392751565	.	.	.	.
BRCA	CAediting_1397941	chr19_58582630_+	6.41296955727693e-29	0.442501337961264	.	.	.	.
CESC	CAediting_1397941	chr19_58582630_+	5.78038037054244e-07	0.475421271908218	.	.	.	.
LUAD	CAediting_1397941	chr19_58582630_+	6.44567401721797e-05	0.273413726228057	.	.	.	.
LUSC	CAediting_1397941	chr19_58582630_+	2.29890302613001e-06	0.315109038551761	.	.	.	.
PRAD	CAediting_1397941	chr19_58582630_+	4.09948873009417e-07	0.483072881834351	.	.	.	.
HNSC	CAediting_1397941	chr19_58582630_+	0.0101671726411778	0.176588724681139	.	.	.	.
STAD	CAediting_1397941	chr19_58582630_+	2.18579642710904e-07	0.368080962232102	.	.	.	.
THCA	CAediting_1397941	chr19_58582630_+	1.36603943725396e-08	0.41614834197086	.	.	.	.
KIRC	CAediting_1397941	chr19_58582630_+	4.6780400821786e-05	0.236683272654238	.	.	.	.
ESCA	CAediting_1397941	chr19_58582630_+	5.75055673219029e-06	0.455375182520377	.	.	.	.
OV	CAediting_1397941	chr19_58582630_+	4.01534065693883e-09	0.381160087070823	.	.	.	.
SKCM	CAediting_1397941	chr19_58582630_+	0.00107861615588475	0.279385571367728	.	.	.	.
SARC	CAediting_1397941	chr19_58582630_+	1.16584685517687e-06	0.533632329697108	.	.	.	.
TGCT	CAediting_1397941	chr19_58582630_+	0.000109596668528519	0.510699538900979	.	.	.	.
BLCA	CAediting_1397942	chr19_58582631_+	5.77893875873052e-06	0.350864322706721	.	.	0.0162882161302538	0.190279456187204
LGG	CAediting_1397942	chr19_58582631_+	7.7270619093634e-06	0.308879221319063	.	.	.	.
BRCA	CAediting_1397942	chr19_58582631_+	2.66913562604915e-46	0.48795533474368	.	.	.	.
CESC	CAediting_1397942	chr19_58582631_+	4.12633928363396e-07	0.396943657059206	.	.	.	.
LUAD	CAediting_1397942	chr19_58582631_+	3.08573925868296e-06	0.273222188063159	.	.	.	.
LUSC	CAediting_1397942	chr19_58582631_+	0.00012717064478547	0.223514844263157	.	.	.	.
GBM	CAediting_1397942	chr19_58582631_+	9.6398205596958e-06	0.426540820005004	.	.	.	.
PRAD	CAediting_1397942	chr19_58582631_+	4.10651787496574e-09	0.412347802749453	.	.	.	.
HNSC	CAediting_1397942	chr19_58582631_+	9.91518041435051e-07	0.276306595832556	.	.	.	.
STAD	CAediting_1397942	chr19_58582631_+	4.58855897592876e-21	0.50848187000386	.	.	.	.
THCA	CAediting_1397942	chr19_58582631_+	5.9913147665952e-14	0.41295829107263	.	.	.	.
KIRC	CAediting_1397942	chr19_58582631_+	3.91291315447509e-09	0.294355178744806	.	.	.	.
UCEC	CAediting_1397942	chr19_58582631_+	5.73607310132565e-05	0.310657416663963	.	.	.	.
KIRP	CAediting_1397942	chr19_58582631_+	0.00577556955403828	0.313784592040469	.	.	.	.
ESCA	CAediting_1397942	chr19_58582631_+	1.58101889259529e-10	0.512176735166948	0.012148622357121	0.213732134973609	.	.
OV	CAediting_1397942	chr19_58582631_+	2.88764650807391e-17	0.461971635962428	.	.	.	.
PAAD	CAediting_1397942	chr19_58582631_+	0.00265924581437926	0.311402146559918	.	.	.	.
SKCM	CAediting_1397942	chr19_58582631_+	1.16236346739313e-07	0.364921856258739	.	.	.	.
MESO	CAediting_1397942	chr19_58582631_+	0.000241647114410905	0.496935597475777	.	.	.	.
SARC	CAediting_1397942	chr19_58582631_+	1.01360809631037e-10	0.557019842178404	.	.	.	.
TGCT	CAediting_1397942	chr19_58582631_+	4.93719133437616e-05	0.45078986228699	.	.	.	.
BLCA	CAediting_1397943	chr19_58582632_+	0.000150370800052482	0.32287440682446	.	.	.	.
LGG	CAediting_1397943	chr19_58582632_+	0.000603292688518732	0.280567313163024	.	.	.	.
BRCA	CAediting_1397943	chr19_58582632_+	1.45234882728759e-21	0.364684330302428	.	.	.	.
CESC	CAediting_1397943	chr19_58582632_+	0.000469516319204069	0.302461083547612	.	.	.	.
LUAD	CAediting_1397943	chr19_58582632_+	3.78069553037642e-05	0.268165040529501	.	.	.	.
LUSC	CAediting_1397943	chr19_58582632_+	0.0130697255886348	0.156780654035953	.	.	.	.
PRAD	CAediting_1397943	chr19_58582632_+	7.53727273348903e-06	0.323405748174037	.	.	.	.
HNSC	CAediting_1397943	chr19_58582632_+	0.00131805452546742	0.200478871216893	.	.	.	.
STAD	CAediting_1397943	chr19_58582632_+	4.61681422303068e-07	0.319214919569892	.	.	.	.
THCA	CAediting_1397943	chr19_58582632_+	2.49728271740065e-05	0.260162954433191	.	.	.	.
KIRC	CAediting_1397943	chr19_58582632_+	0.00030171072713793	0.197717510985626	.	.	.	.
UCEC	CAediting_1397943	chr19_58582632_+	.	.	0.0149490497998785	0.195168596790925	.	.
KIRP	CAediting_1397943	chr19_58582632_+	0.0403790694026804	0.253031587607996	.	.	.	.
ESCA	CAediting_1397943	chr19_58582632_+	1.81701417758683e-07	0.463551869405729	.	.	.	.
OV	CAediting_1397943	chr19_58582632_+	2.85523733949245e-07	0.317763936946815	.	.	.	.
PAAD	CAediting_1397943	chr19_58582632_+	0.0390475560002024	0.243791601354139	.	.	.	.
SKCM	CAediting_1397943	chr19_58582632_+	0.000121140520749264	0.298331092185731	.	.	.	.
SARC	CAediting_1397943	chr19_58582632_+	0.000334591384239064	0.369770749493167	.	.	.	.
TGCT	CAediting_1397943	chr19_58582632_+	0.0127410795242385	0.296338176590082	.	.	.	.
BRCA	CAediting_1397945	chr19_58584088_+	5.69665304030805e-12	0.312201498369138	.	.	.	.
CESC	CAediting_1397945	chr19_58584088_+	0.00468366527753154	0.276571432152747	.	.	.	.
LUSC	CAediting_1397945	chr19_58584088_+	0.00379574625654914	0.259173483117226	.	.	.	.
HNSC	CAediting_1397945	chr19_58584088_+	0.000473102616509765	0.33069148528477	.	.	.	.
STAD	CAediting_1397945	chr19_58584088_+	0.00292224956660045	0.20685121407746	.	.	.	.
THCA	CAediting_1397945	chr19_58584088_+	0.000230746326377484	0.362085338948586	.	.	.	.
KIRC	CAediting_1397945	chr19_58584088_+	5.92477394460382e-05	0.290811010400171	.	.	.	.
UCEC	CAediting_1397945	chr19_58584088_+	0.0022492877133061	0.262727231622005	.	.	.	.
ESCA	CAediting_1397945	chr19_58584088_+	0.0180210838612127	0.236132153831943	.	.	.	.
OV	CAediting_1397945	chr19_58584088_+	0.0097394103335184	0.185177158897072	.	.	.	.
PCPG	CAediting_1397945	chr19_58584088_+	0.0022894446516354	0.35391381694047	.	.	.	.
SARC	CAediting_1397945	chr19_58584088_+	0.026140994629053	0.302608937209068	.	.	0.044657482765866	0.274387444191335
BLCA	CAediting_1397946	chr19_58584089_+	2.58881707690624e-11	0.412413228600804	.	.	.	.
LGG	CAediting_1397946	chr19_58584089_+	9.09871802681422e-09	0.326746415397075	.	.	.	.
BRCA	CAediting_1397946	chr19_58584089_+	3.50536121951883e-40	0.422478212031256	.	.	.	.
LIHC	CAediting_1397946	chr19_58584089_+	8.51090999098172e-06	0.37805284174957	.	.	.	.
CESC	CAediting_1397946	chr19_58584089_+	8.982388423976e-06	0.295031759046642	.	.	.	.
LUAD	CAediting_1397946	chr19_58584089_+	7.5794994998287e-10	0.341424017936709	.	.	.	.
COAD	CAediting_1397946	chr19_58584089_+	0.00108615126151893	0.251398666260741	.	.	.	.
LUSC	CAediting_1397946	chr19_58584089_+	6.48852496523073e-13	0.383741617283851	.	.	.	.
GBM	CAediting_1397946	chr19_58584089_+	0.000287588244744444	0.309594838938377	.	.	.	.
PRAD	CAediting_1397946	chr19_58584089_+	2.1901712687974e-09	0.350854728863073	.	.	.	.
HNSC	CAediting_1397946	chr19_58584089_+	4.41291255079079e-08	0.315096095838558	.	.	.	.
STAD	CAediting_1397946	chr19_58584089_+	4.31969637236631e-12	0.365522698563705	.	.	.	.
THCA	CAediting_1397946	chr19_58584089_+	8.6409510897105e-09	0.285884273086273	.	.	.	.
KIRC	CAediting_1397946	chr19_58584089_+	8.97997095143094e-08	0.254308132872152	.	.	.	.
UCEC	CAediting_1397946	chr19_58584089_+	3.6975084643219e-21	0.462951052043342	0.00381296564803195	0.149665131931381	.	.
KIRP	CAediting_1397946	chr19_58584089_+	2.60251078607591e-06	0.381413701922361	.	.	.	.
ESCA	CAediting_1397946	chr19_58584089_+	7.81587057470377e-05	0.314799662919221	.	.	.	.
OV	CAediting_1397946	chr19_58584089_+	3.02048847461348e-08	0.2899595750202	.	.	.	.
PAAD	CAediting_1397946	chr19_58584089_+	4.00739003642986e-05	0.377832125489637	.	.	.	.
PCPG	CAediting_1397946	chr19_58584089_+	5.23670660934663e-05	0.336077104842697	.	.	.	.
SKCM	CAediting_1397946	chr19_58584089_+	9.05246497613866e-06	0.273448394573891	.	.	.	.
MESO	CAediting_1397946	chr19_58584089_+	0.0441998753219406	0.26523446863336	.	.	.	.
SARC	CAediting_1397946	chr19_58584089_+	1.20954377249588e-10	0.50085287832518	.	.	.	.
TGCT	CAediting_1397946	chr19_58584089_+	3.13049114480233e-07	0.513434136182572	.	.	.	.
THYM	CAediting_1397946	chr19_58584089_+	1.98369062920392e-06	0.472463786971851	.	.	.	.
BRCA	CAediting_1397964	chr19_58584198_+	0.00146981473189783	0.287209238458087	.	.	.	.
BRCA	CAediting_1397965	chr19_58584199_+	0.0031225804764022	0.243828056153581	.	.	.	.
KIRC	CAediting_1397966	chr19_58584202_+	0.0293173862149414	0.296778157939667	.	.	.	.
BLCA	CAediting_1397967	chr19_58584206_+	2.74026866139527e-19	0.444893714376679	.	.	.	.
LGG	CAediting_1397967	chr19_58584206_+	1.31961140238415e-08	0.250001948989755	.	.	.	.
BRCA	CAediting_1397967	chr19_58584206_+	4.82088680598235e-61	0.476991390008275	.	.	.	.
LIHC	CAediting_1397967	chr19_58584206_+	1.43296462736912e-06	0.289475328087378	.	.	.	.
CESC	CAediting_1397967	chr19_58584206_+	6.54849308412056e-13	0.4075416337056	.	.	.	.
LUAD	CAediting_1397967	chr19_58584206_+	1.6122488864615e-16	0.372462075337724	.	.	.	.
COAD	CAediting_1397967	chr19_58584206_+	5.88119362145578e-10	0.358109276599915	.	.	.	.
LUSC	CAediting_1397967	chr19_58584206_+	4.39293423922299e-17	0.37928234819828	.	.	.	.
GBM	CAediting_1397967	chr19_58584206_+	5.45023520195711e-07	0.381562577436897	.	.	.	.
PRAD	CAediting_1397967	chr19_58584206_+	4.15589518157732e-20	0.415307800524907	.	.	.	.
HNSC	CAediting_1397967	chr19_58584206_+	2.23795244381556e-09	0.281993906845768	.	.	.	.
STAD	CAediting_1397967	chr19_58584206_+	4.13515425542782e-10	0.331463578521745	.	.	.	.
THCA	CAediting_1397967	chr19_58584206_+	3.9477962388491e-16	0.355136512034993	.	.	.	.
KIRC	CAediting_1397967	chr19_58584206_+	3.64735611446141e-06	0.203986237121879	.	.	.	.
UCEC	CAediting_1397967	chr19_58584206_+	1.85776699294239e-27	0.47656023487785	0.000124395327612739	0.1779689086834	.	.
KIRP	CAediting_1397967	chr19_58584206_+	0.000687265381133853	0.218524960834312	.	.	.	.
ACC	CAediting_1397967	chr19_58584206_+	3.05478624109862e-08	0.622680106461656	.	.	.	.
ESCA	CAediting_1397967	chr19_58584206_+	0.0143533712632677	0.195073197109281	.	.	.	.
OV	CAediting_1397967	chr19_58584206_+	1.78385029449349e-08	0.291368204352346	.	.	.	.
PAAD	CAediting_1397967	chr19_58584206_+	1.39371567559484e-05	0.331169218128024	.	.	.	.
PCPG	CAediting_1397967	chr19_58584206_+	7.02941528663465e-12	0.482391519531174	1.6360937127741e-06	0.348476084108775	.	.
SKCM	CAediting_1397967	chr19_58584206_+	8.26108328020094e-23	0.469837590065662	.	.	.	.
MESO	CAediting_1397967	chr19_58584206_+	1.29188727816804e-08	0.578086461745663	.	.	.	.
READ	CAediting_1397967	chr19_58584206_+	6.52631102963428e-06	0.452984481831199	.	.	.	.
SARC	CAediting_1397967	chr19_58584206_+	7.20539483658044e-10	0.389680135609078	.	.	.	.
TGCT	CAediting_1397967	chr19_58584206_+	2.98389137512428e-08	0.456403286528186	.	.	.	.
THYM	CAediting_1397967	chr19_58584206_+	5.79980320295066e-15	0.651145143019806	.	.	0.0100522007711389	0.241239097694762

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Relation with cancer stages for CENPBD1P1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_1397943	chr19_58582632_+	0.000868911894773978	0.132975092995022
BRCA	pathologic_stage	CAediting_1397966	chr19_58584202_+	0.00109703275124339	0.290916612536398
ESCA	clinical_stage	CAediting_1397942	chr19_58582631_+	0.0288476636131082	-0.345794034445185
ESCA	clinical_stage	CAediting_1397946	chr19_58584089_+	0.0418040619659377	-0.288993570251263
HNSC	clinical_stage	CAediting_1397967	chr19_58584206_+	0.000434952696776337	0.170700174259682
HNSC	pathologic_stage	CAediting_1397967	chr19_58584206_+	2.97859067075005e-05	0.213257994602721
KIRC	pathologic_stage	CAediting_1397941	chr19_58582630_+	0.0336689103504421	0.124993364173192
KIRC	pathologic_stage	CAediting_1397946	chr19_58584089_+	8.84184579040206e-06	0.212949274857485
KIRC	pathologic_stage	CAediting_1397967	chr19_58584206_+	2.71797226889321e-06	0.206997157077669
KIRP	clinical_stage	CAediting_1397942	chr19_58582631_+	0.023933054766969	0.319031350541619
KIRP	clinical_stage	CAediting_1397946	chr19_58584089_+	0.00878114174620813	0.258230330738855
KIRP	clinical_stage	CAediting_1397967	chr19_58584206_+	0.00214863574684549	0.235888267951234
KIRP	pathologic_stage	CAediting_1397942	chr19_58582631_+	0.0115158192204732	0.296236218690442
KIRP	pathologic_stage	CAediting_1397946	chr19_58584089_+	0.00125362504789248	0.281054872610871
KIRP	pathologic_stage	CAediting_1397967	chr19_58584206_+	0.000545337007399418	0.232291429536168
LIHC	pathologic_stage	CAediting_1397943	chr19_58582632_+	0.0263978401144691	-0.267293136949694
LUAD	pathologic_stage	CAediting_1397925	chr19_58582393_+	0.0221993049658509	0.197462121005447
LUAD	pathologic_stage	CAediting_1397942	chr19_58582631_+	0.0345966127495224	0.126563979960708
LUAD	pathologic_stage	CAediting_1397946	chr19_58584089_+	0.0410442806257747	0.117645494780396
TGCT	clinical_stage	CAediting_1397941	chr19_58582630_+	0.00792790667194593	0.47541676879723
TGCT	clinical_stage	CAediting_1397942	chr19_58582631_+	0.0410399264415562	0.324535398093323
THCA	pathologic_stage	CAediting_1397925	chr19_58582393_+	0.0227917274767623	0.1828213250465
THCA	pathologic_stage	CAediting_1397942	chr19_58582631_+	0.0318467002946674	0.123957572916838
THCA	pathologic_stage	CAediting_1397967	chr19_58584206_+	3.5748553610363e-05	0.18576342614046
UCEC	clinical_stage	CAediting_1397946	chr19_58584089_+	0.0326231343289961	0.110813805570812

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Relation with survival for CENPBD1P1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
BLCA	CAediting_1397941	chr19_58582630_+	0.0367247091283308	0.0191019	189.052
BRCA	CAediting_1397937	chr19_58582577_+	0.0275591198496998	0.0286393	409.168
LIHC	CAediting_1397943	chr19_58582632_+	0.00522314535249457	0.00438	0.000131479
LUAD	CAediting_1397945	chr19_58584088_+	0.0439789123765416	0.0449143	15.0662
UCEC	CAediting_1397946	chr19_58584089_+	0.0174533151272513	0.00620545	13.6907
KIRP	CAediting_1397967	chr19_58584206_+	0.0482348559859329	0.00617216	21.2878
ESCA	CAediting_1397925	chr19_58582393_+	0.0121383127766449	0.0249498	2125.24

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RelatedDrugs for CENPBD1P1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CENPBD1P1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene