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Editing gene: SLC20A1 (CAeditome ID:6574)

Gene summary for SLC20A1

Gene summary

Gene information	Gene symbol	SLC20A1
	Gene ID	6574
	Gene name	solute carrier family 20 member 1
	Synonyms	GLVR1\|Glvr-1\|PIT1\|PiT-1
	Cytomap	2q14.1
	Type of gene	protein-coding
	Description	sodium-dependent phosphate transporter 1gibbon ape leukemia virus receptor 1leukemia virus receptor 1 homologsolute carrier family 20 (phosphate transporter), member 1
	Modification date	20210518
	UniProtAcc	Q8WUM9
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for SLC20A1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000144136.9

RNA A-to-I editing events in Cancer.

CAediting_207889(112650472, +), CAediting_207890(112651530, +), CAediting_207891(112651533, +), CAediting_207892(112651591, +), CAediting_207893(112651595, +), CAediting_207894(112651597, +), CAediting_207895(112653793, +), CAediting_207896(112653817, +), CAediting_207897(112653870, +), CAediting_207898(112653872, +), CAediting_207899(112653893, +), CAediting_207900(112653897, +), CAediting_207901(112653922, +), CAediting_207902(112653932, +), CAediting_207903(112653975, +), CAediting_207904(112654066, +), CAediting_207905(112654068, +), CAediting_207906(112654070, +), CAediting_207907(112654083, +), CAediting_207908(112654641, +), CAediting_207909(112654642, +), CAediting_207910(112654647, +), CAediting_207911(112654685, +), CAediting_207912(112654688, +), CAediting_207913(112654693, +), CAediting_207914(112654694, +), CAediting_207915(112654709, +), CAediting_207916(112654717, +), CAediting_207917(112654718, +), CAediting_207918(112654719, +), CAediting_207919(112654724, +), CAediting_207920(112654730, +), CAediting_207921(112654733, +), CAediting_207922(112654734, +), CAediting_207923(112654740, +), CAediting_207924(112654743, +), CAediting_207925(112654744, +), CAediting_207926(112654745, +), CAediting_207927(112654746, +), CAediting_207928(112654749, +), CAediting_207929(112654750, +), CAediting_207930(112654765, +), CAediting_207931(112654775, +), CAediting_207932(112654776, +), CAediting_207933(112654781, +), CAediting_207934(112654785, +), CAediting_207935(112654792, +), CAediting_207936(112654805, +), CAediting_207937(112654811, +), CAediting_207938(112654816, +), CAediting_207939(112654824, +), CAediting_207940(112654837, +), CAediting_207941(112654841, +), CAediting_207942(112654845, +), CAediting_207943(112654846, +), CAediting_207944(112654848, +), CAediting_207945(112654856, +), CAediting_207946(112654866, +), CAediting_207947(112654880, +), CAediting_207948(112654898, +), CAediting_207949(112654899, +), CAediting_207950(112655008, +), CAediting_207951(112655019, +), CAediting_207952(112655033, +), CAediting_207953(112655034, +), CAediting_207954(112655049, +), CAediting_207955(112655073, +), CAediting_207956(112655086, +), CAediting_207957(112655098, +), CAediting_207958(112655124, +), CAediting_207959(112655135, +), CAediting_207960(112655143, +), CAediting_207961(112655149, +), CAediting_207962(112655166, +), CAediting_207963(112655197, +), CAediting_207964(112655221, +), CAediting_207965(112655231, +), CAediting_207966(112655243, +), CAediting_207967(112655252, +), CAediting_207968(112655800, +), CAediting_207969(112655817, +), CAediting_207970(112655826, +), CAediting_207971(112655844, +), CAediting_207972(112655855, +), CAediting_207973(112655874, +), CAediting_207974(112655875, +), CAediting_207975(112655881, +), CAediting_207976(112655888, +), CAediting_207977(112655963, +), CAediting_207978(112655975, +), CAediting_207979(112656215, +), CAediting_207980(112656220, +), CAediting_207981(112656235, +), CAediting_207982(112656259, +), CAediting_207983(112656265, +), CAediting_207984(112656297, +), CAediting_207985(112656301, +), CAediting_207986(112656309, +), CAediting_207987(112656314, +), CAediting_207988(112656326, +), CAediting_207989(112656336, +), CAediting_207990(112656346, +), CAediting_207991(112656362, +), CAediting_207992(112656384, +), CAediting_207993(112656461, +), CAediting_207994(112656463, +), CAediting_207995(112656475, +), CAediting_207996(112656477, +), CAediting_207997(112661553, +), CAediting_207998(112661565, +), CAediting_207999(112661588, +), CAediting_208000(112661610, +), CAediting_208001(112661612, +), CAediting_208002(112661629, +), CAediting_208003(112661675, +), CAediting_208004(112661678, +), CAediting_208005(112661701, +), CAediting_208006(112661738, +), CAediting_208007(112661777, +), CAediting_208008(112661811, +), CAediting_208009(112661817, +), CAediting_208010(112661823, +), CAediting_208011(112662304, +), CAediting_208012(112662370, +), CAediting_208013(112662373, +), CAediting_208014(112662398, +), CAediting_208015(112662422, +), CAediting_208016(112662434, +), CAediting_208017(112662486, +), CAediting_208018(112662501, +), CAediting_208019(112662521, +), CAediting_208020(112662530, +),

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RNA editing positional annotations for SLC20A1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_207889	chr2_112650472_+	ncRNA_intronic
CAediting_207890	chr2_112651530_+	ncRNA_intronic
CAediting_207891	chr2_112651533_+	ncRNA_intronic
CAediting_207892	chr2_112651591_+	ncRNA_intronic
CAediting_207893	chr2_112651595_+	ncRNA_intronic
CAediting_207894	chr2_112651597_+	ncRNA_intronic
CAediting_207895	chr2_112653793_+	ncRNA_intronic
CAediting_207896	chr2_112653817_+	ncRNA_intronic
CAediting_207897	chr2_112653870_+	ncRNA_intronic
CAediting_207898	chr2_112653872_+	ncRNA_intronic
CAediting_207899	chr2_112653893_+	ncRNA_intronic
CAediting_207900	chr2_112653897_+	ncRNA_intronic
CAediting_207901	chr2_112653922_+	ncRNA_intronic
CAediting_207902	chr2_112653932_+	ncRNA_intronic
CAediting_207903	chr2_112653975_+	ncRNA_intronic
CAediting_207904	chr2_112654066_+	ncRNA_intronic
CAediting_207905	chr2_112654068_+	ncRNA_intronic
CAediting_207906	chr2_112654070_+	ncRNA_intronic
CAediting_207907	chr2_112654083_+	ncRNA_intronic
CAediting_207908	chr2_112654641_+	ncRNA_intronic
CAediting_207909	chr2_112654642_+	ncRNA_intronic
CAediting_207910	chr2_112654647_+	ncRNA_intronic
CAediting_207911	chr2_112654685_+	ncRNA_intronic
CAediting_207912	chr2_112654688_+	ncRNA_intronic
CAediting_207913	chr2_112654693_+	ncRNA_intronic
CAediting_207914	chr2_112654694_+	ncRNA_intronic
CAediting_207915	chr2_112654709_+	ncRNA_intronic
CAediting_207916	chr2_112654717_+	ncRNA_intronic
CAediting_207917	chr2_112654718_+	ncRNA_intronic
CAediting_207918	chr2_112654719_+	ncRNA_intronic
CAediting_207919	chr2_112654724_+	ncRNA_intronic
CAediting_207920	chr2_112654730_+	ncRNA_intronic
CAediting_207921	chr2_112654733_+	ncRNA_intronic
CAediting_207922	chr2_112654734_+	ncRNA_intronic
CAediting_207923	chr2_112654740_+	ncRNA_intronic
CAediting_207924	chr2_112654743_+	ncRNA_intronic
CAediting_207925	chr2_112654744_+	ncRNA_intronic
CAediting_207926	chr2_112654745_+	ncRNA_intronic
CAediting_207927	chr2_112654746_+	ncRNA_intronic
CAediting_207928	chr2_112654749_+	ncRNA_intronic
CAediting_207929	chr2_112654750_+	ncRNA_intronic
CAediting_207930	chr2_112654765_+	ncRNA_intronic
CAediting_207931	chr2_112654775_+	ncRNA_intronic
CAediting_207932	chr2_112654776_+	ncRNA_intronic
CAediting_207933	chr2_112654781_+	ncRNA_intronic
CAediting_207934	chr2_112654785_+	ncRNA_intronic
CAediting_207935	chr2_112654792_+	ncRNA_intronic
CAediting_207936	chr2_112654805_+	ncRNA_intronic
CAediting_207937	chr2_112654811_+	ncRNA_intronic
CAediting_207938	chr2_112654816_+	ncRNA_intronic
CAediting_207939	chr2_112654824_+	ncRNA_intronic
CAediting_207940	chr2_112654837_+	ncRNA_intronic
CAediting_207941	chr2_112654841_+	ncRNA_intronic
CAediting_207942	chr2_112654845_+	ncRNA_intronic
CAediting_207943	chr2_112654846_+	ncRNA_intronic
CAediting_207944	chr2_112654848_+	ncRNA_intronic
CAediting_207945	chr2_112654856_+	ncRNA_intronic
CAediting_207946	chr2_112654866_+	ncRNA_intronic
CAediting_207947	chr2_112654880_+	ncRNA_intronic
CAediting_207948	chr2_112654898_+	ncRNA_intronic
CAediting_207949	chr2_112654899_+	ncRNA_intronic
CAediting_207950	chr2_112655008_+	ncRNA_intronic
CAediting_207951	chr2_112655019_+	ncRNA_intronic
CAediting_207952	chr2_112655033_+	ncRNA_intronic
CAediting_207953	chr2_112655034_+	ncRNA_intronic
CAediting_207954	chr2_112655049_+	ncRNA_intronic
CAediting_207955	chr2_112655073_+	ncRNA_intronic
CAediting_207956	chr2_112655086_+	ncRNA_intronic
CAediting_207957	chr2_112655098_+	ncRNA_intronic
CAediting_207958	chr2_112655124_+	ncRNA_intronic
CAediting_207959	chr2_112655135_+	ncRNA_intronic
CAediting_207960	chr2_112655143_+	ncRNA_intronic
CAediting_207961	chr2_112655149_+	ncRNA_intronic
CAediting_207962	chr2_112655166_+	ncRNA_intronic
CAediting_207963	chr2_112655197_+	ncRNA_intronic
CAediting_207964	chr2_112655221_+	ncRNA_intronic
CAediting_207965	chr2_112655231_+	ncRNA_intronic
CAediting_207966	chr2_112655243_+	ncRNA_intronic
CAediting_207967	chr2_112655252_+	ncRNA_intronic
CAediting_207968	chr2_112655800_+	ncRNA_intronic
CAediting_207969	chr2_112655817_+	ncRNA_intronic
CAediting_207970	chr2_112655826_+	ncRNA_intronic
CAediting_207971	chr2_112655844_+	ncRNA_intronic
CAediting_207972	chr2_112655855_+	ncRNA_intronic
CAediting_207973	chr2_112655874_+	ncRNA_intronic
CAediting_207974	chr2_112655875_+	ncRNA_intronic
CAediting_207975	chr2_112655881_+	ncRNA_intronic
CAediting_207976	chr2_112655888_+	ncRNA_intronic
CAediting_207977	chr2_112655963_+	ncRNA_intronic
CAediting_207978	chr2_112655975_+	ncRNA_intronic
CAediting_207979	chr2_112656215_+	ncRNA_intronic
CAediting_207980	chr2_112656220_+	ncRNA_intronic
CAediting_207981	chr2_112656235_+	ncRNA_intronic
CAediting_207982	chr2_112656259_+	ncRNA_intronic
CAediting_207983	chr2_112656265_+	ncRNA_intronic
CAediting_207984	chr2_112656297_+	ncRNA_intronic
CAediting_207985	chr2_112656301_+	ncRNA_intronic
CAediting_207986	chr2_112656309_+	ncRNA_intronic
CAediting_207987	chr2_112656314_+	ncRNA_intronic
CAediting_207988	chr2_112656326_+	ncRNA_intronic
CAediting_207989	chr2_112656336_+	ncRNA_intronic
CAediting_207990	chr2_112656346_+	ncRNA_intronic
CAediting_207991	chr2_112656362_+	ncRNA_intronic
CAediting_207992	chr2_112656384_+	ncRNA_intronic
CAediting_207993	chr2_112656461_+	ncRNA_intronic
CAediting_207994	chr2_112656463_+	ncRNA_intronic
CAediting_207995	chr2_112656475_+	ncRNA_intronic
CAediting_207996	chr2_112656477_+	ncRNA_intronic
CAediting_207997	chr2_112661553_+	ncRNA_intronic
CAediting_207998	chr2_112661565_+	ncRNA_intronic
CAediting_207999	chr2_112661588_+	ncRNA_intronic
CAediting_208000	chr2_112661610_+	ncRNA_intronic
CAediting_208001	chr2_112661612_+	ncRNA_intronic
CAediting_208002	chr2_112661629_+	ncRNA_intronic
CAediting_208003	chr2_112661675_+	ncRNA_intronic
CAediting_208004	chr2_112661678_+	ncRNA_intronic
CAediting_208005	chr2_112661701_+	ncRNA_intronic
CAediting_208006	chr2_112661738_+	ncRNA_intronic
CAediting_208007	chr2_112661777_+	ncRNA_intronic
CAediting_208008	chr2_112661811_+	ncRNA_intronic
CAediting_208009	chr2_112661817_+	ncRNA_intronic
CAediting_208010	chr2_112661823_+	ncRNA_intronic
CAediting_208011	chr2_112662304_+	ncRNA_intronic
CAediting_208012	chr2_112662370_+	ncRNA_intronic
CAediting_208013	chr2_112662373_+	ncRNA_intronic
CAediting_208014	chr2_112662398_+	ncRNA_intronic
CAediting_208015	chr2_112662422_+	ncRNA_intronic
CAediting_208016	chr2_112662434_+	ncRNA_intronic
CAediting_208017	chr2_112662486_+	ncRNA_intronic
CAediting_208018	chr2_112662501_+	ncRNA_intronic
CAediting_208019	chr2_112662521_+	ncRNA_intronic
CAediting_208020	chr2_112662530_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_207889	chr2_112650472_+	SINE	Alu	AluSx1
CAediting_207890	chr2_112651530_+	SINE	Alu	AluSc8
CAediting_207891	chr2_112651533_+	SINE	Alu	AluSc8
CAediting_207892	chr2_112651591_+	SINE	Alu	AluSc8
CAediting_207893	chr2_112651595_+	SINE	Alu	AluSc8
CAediting_207894	chr2_112651597_+	SINE	Alu	AluSc8
CAediting_207895	chr2_112653793_+	SINE	Alu	AluSp
CAediting_207896	chr2_112653817_+	SINE	Alu	AluSp
CAediting_207897	chr2_112653870_+	SINE	Alu	AluSp
CAediting_207898	chr2_112653872_+	SINE	Alu	AluSp
CAediting_207899	chr2_112653893_+	SINE	Alu	AluSp
CAediting_207900	chr2_112653897_+	SINE	Alu	AluSp
CAediting_207901	chr2_112653922_+	SINE	Alu	AluSp
CAediting_207902	chr2_112653932_+	SINE	Alu	AluSp
CAediting_207903	chr2_112653975_+	SINE	Alu	AluSp
CAediting_207904	chr2_112654066_+	SINE	Alu	AluSp
CAediting_207905	chr2_112654068_+	SINE	Alu	AluSp
CAediting_207906	chr2_112654070_+	SINE	Alu	AluSp
CAediting_207907	chr2_112654083_+	SINE	Alu	AluSp
CAediting_207908	chr2_112654641_+	SINE	Alu	AluSg4
CAediting_207909	chr2_112654642_+	SINE	Alu	AluSg4
CAediting_207910	chr2_112654647_+	SINE	Alu	AluSg4
CAediting_207911	chr2_112654685_+	SINE	Alu	AluSg4
CAediting_207912	chr2_112654688_+	SINE	Alu	AluSg4
CAediting_207913	chr2_112654693_+	SINE	Alu	AluSg4
CAediting_207914	chr2_112654694_+	SINE	Alu	AluSg4
CAediting_207915	chr2_112654709_+	SINE	Alu	AluSg4
CAediting_207916	chr2_112654717_+	SINE	Alu	AluSg4
CAediting_207917	chr2_112654718_+	SINE	Alu	AluSg4
CAediting_207918	chr2_112654719_+	SINE	Alu	AluSg4
CAediting_207919	chr2_112654724_+	SINE	Alu	AluSg4
CAediting_207920	chr2_112654730_+	SINE	Alu	AluSg4
CAediting_207921	chr2_112654733_+	SINE	Alu	AluSg4
CAediting_207922	chr2_112654734_+	SINE	Alu	AluSg4
CAediting_207923	chr2_112654740_+	SINE	Alu	AluSg4
CAediting_207924	chr2_112654743_+	SINE	Alu	AluSg4
CAediting_207925	chr2_112654744_+	SINE	Alu	AluSg4
CAediting_207926	chr2_112654745_+	SINE	Alu	AluSg4
CAediting_207927	chr2_112654746_+	SINE	Alu	AluSg4
CAediting_207928	chr2_112654749_+	SINE	Alu	AluSg4
CAediting_207929	chr2_112654750_+	SINE	Alu	AluSg4
CAediting_207930	chr2_112654765_+	SINE	Alu	AluSg4
CAediting_207931	chr2_112654775_+	SINE	Alu	AluSg4
CAediting_207932	chr2_112654776_+	SINE	Alu	AluSg4
CAediting_207933	chr2_112654781_+	SINE	Alu	AluSg4
CAediting_207934	chr2_112654785_+	SINE	Alu	AluSg4
CAediting_207935	chr2_112654792_+	SINE	Alu	AluSg4
CAediting_207936	chr2_112654805_+	SINE	Alu	AluSg4
CAediting_207937	chr2_112654811_+	SINE	Alu	AluSg4
CAediting_207938	chr2_112654816_+	SINE	Alu	AluSg4
CAediting_207939	chr2_112654824_+	SINE	Alu	AluSg4
CAediting_207940	chr2_112654837_+	SINE	Alu	AluSg4
CAediting_207941	chr2_112654841_+	SINE	Alu	AluSg4
CAediting_207942	chr2_112654845_+	SINE	Alu	AluSg4
CAediting_207943	chr2_112654846_+	SINE	Alu	AluSg4
CAediting_207944	chr2_112654848_+	SINE	Alu	AluSg4
CAediting_207945	chr2_112654856_+	SINE	Alu	AluSg4
CAediting_207946	chr2_112654866_+	SINE	Alu	AluSg4
CAediting_207947	chr2_112654880_+	SINE	Alu	AluSg4
CAediting_207948	chr2_112654898_+	SINE	Alu	AluSg4
CAediting_207949	chr2_112654899_+	SINE	Alu	AluSg4
CAediting_207950	chr2_112655008_+	SINE	Alu	AluSx
CAediting_207951	chr2_112655019_+	SINE	Alu	AluSx
CAediting_207952	chr2_112655033_+	SINE	Alu	AluSx
CAediting_207953	chr2_112655034_+	SINE	Alu	AluSx
CAediting_207954	chr2_112655049_+	SINE	Alu	AluSx
CAediting_207955	chr2_112655073_+	SINE	Alu	AluSx
CAediting_207956	chr2_112655086_+	SINE	Alu	AluSx
CAediting_207957	chr2_112655098_+	SINE	Alu	AluSx
CAediting_207958	chr2_112655124_+	SINE	Alu	AluSx
CAediting_207959	chr2_112655135_+	SINE	Alu	AluSx
CAediting_207960	chr2_112655143_+	SINE	Alu	AluSx
CAediting_207961	chr2_112655149_+	SINE	Alu	AluSx
CAediting_207962	chr2_112655166_+	SINE	Alu	AluSx
CAediting_207963	chr2_112655197_+	SINE	Alu	AluSx
CAediting_207964	chr2_112655221_+	SINE	Alu	AluSx
CAediting_207965	chr2_112655231_+	SINE	Alu	AluSx
CAediting_207966	chr2_112655243_+	SINE	Alu	AluSx
CAediting_207967	chr2_112655252_+	SINE	Alu	AluSx
CAediting_207968	chr2_112655800_+	SINE	Alu	AluSq2
CAediting_207969	chr2_112655817_+	SINE	Alu	AluSq2
CAediting_207970	chr2_112655826_+	SINE	Alu	AluSq2
CAediting_207971	chr2_112655844_+	SINE	Alu	AluSq2
CAediting_207972	chr2_112655855_+	SINE	Alu	AluSq2
CAediting_207973	chr2_112655874_+	SINE	Alu	AluSq2
CAediting_207974	chr2_112655875_+	SINE	Alu	AluSq2
CAediting_207975	chr2_112655881_+	SINE	Alu	AluSq2
CAediting_207976	chr2_112655888_+	SINE	Alu	AluSq2
CAediting_207977	chr2_112655963_+	SINE	Alu	AluSq2
CAediting_207978	chr2_112655975_+	SINE	Alu	AluSq2
CAediting_207979	chr2_112656215_+	SINE	Alu	AluSx1
CAediting_207980	chr2_112656220_+	SINE	Alu	AluSx1
CAediting_207981	chr2_112656235_+	SINE	Alu	AluSx1
CAediting_207982	chr2_112656259_+	SINE	Alu	AluSx1
CAediting_207983	chr2_112656265_+	SINE	Alu	AluSx1
CAediting_207984	chr2_112656297_+	SINE	Alu	AluSx1
CAediting_207985	chr2_112656301_+	SINE	Alu	AluSx1
CAediting_207986	chr2_112656309_+	SINE	Alu	AluSx1
CAediting_207987	chr2_112656314_+	SINE	Alu	AluSx1
CAediting_207988	chr2_112656326_+	SINE	Alu	AluSx1
CAediting_207989	chr2_112656336_+	SINE	Alu	AluSx1
CAediting_207990	chr2_112656346_+	SINE	Alu	AluSx1
CAediting_207991	chr2_112656362_+	SINE	Alu	AluSx1
CAediting_207992	chr2_112656384_+	SINE	Alu	AluSx1
CAediting_207993	chr2_112656461_+	SINE	Alu	AluSx1
CAediting_207994	chr2_112656463_+	SINE	Alu	AluSx1
CAediting_207995	chr2_112656475_+	SINE	Alu	AluSx1
CAediting_207996	chr2_112656477_+	SINE	Alu	AluSx1
CAediting_207997	chr2_112661553_+	SINE	Alu	AluSx1
CAediting_207998	chr2_112661565_+	SINE	Alu	AluSx1
CAediting_207999	chr2_112661588_+	SINE	Alu	AluSx1
CAediting_208000	chr2_112661610_+	SINE	Alu	AluSx1
CAediting_208001	chr2_112661612_+	SINE	Alu	AluSx1
CAediting_208002	chr2_112661629_+	SINE	Alu	AluSx1
CAediting_208003	chr2_112661675_+	SINE	Alu	AluSx1
CAediting_208004	chr2_112661678_+	SINE	Alu	AluSx1
CAediting_208005	chr2_112661701_+	SINE	Alu	AluSx1
CAediting_208006	chr2_112661738_+	SINE	Alu	AluSx1
CAediting_208007	chr2_112661777_+	SINE	Alu	AluSx1
CAediting_208008	chr2_112661811_+	SINE	Alu	AluSx1
CAediting_208009	chr2_112661817_+	SINE	Alu	AluSx1
CAediting_208010	chr2_112661823_+	SINE	Alu	AluSx1
CAediting_208011	chr2_112662304_+	SINE	Alu	AluSx3
CAediting_208012	chr2_112662370_+	SINE	Alu	AluSx3
CAediting_208013	chr2_112662373_+	SINE	Alu	AluSx3
CAediting_208014	chr2_112662398_+	SINE	Alu	AluSx3
CAediting_208015	chr2_112662422_+	SINE	Alu	AluSx3
CAediting_208016	chr2_112662434_+	SINE	Alu	AluSx3
CAediting_208017	chr2_112662486_+	SINE	Alu	AluSx3
CAediting_208018	chr2_112662501_+	SINE	Alu	AluSx3
CAediting_208019	chr2_112662521_+	SINE	Alu	AluSx3
CAediting_208020	chr2_112662530_+	SINE	Alu	AluSx3

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RNA A-to-I editing events in the alternative splicing sites for SLC20A1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000144136.9.SLC20A1.

Correlation between RNA A-to-I editing and PSI for ENSG00000144136.9.SLC20A1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLC20A1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SLC20A1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SLC20A1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_414656	chr5_72878640_+	ENSG00000144136.9	ENST00000413135	hsa-miR-4804-3p	112659242	112659248	7mer-m8	112659231	112659249	148	-10.54

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SLC20A1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SLC20A1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_207964	chr2_112655221_+	0.0488342616358692	0.201636994453707	.	.	.	.
SKCM	CAediting_207964	chr2_112655221_+	.	.	0.00639017184285949	0.277934413477465	.	.

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Relation with cancer stages for SLC20A1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SLC20A1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SLC20A1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SLC20A1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
SLC20A1	C0005944	Metabolic Bone Disorder	1	CTD_human
SLC20A1	C0014175	Endometriosis	1	CTD_human
SLC20A1	C0023893	Liver Cirrhosis, Experimental	1	CTD_human
SLC20A1	C0029453	Osteopenia	1	CTD_human
SLC20A1	C0269102	Endometrioma	1	CTD_human
SLC20A1	C0428791	Aortic valve calcification	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene