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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SLC4A2 (CAeditome ID:6522) |
Gene summary for SLC4A2 |
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Gene information | Gene symbol | SLC4A2 | Gene ID | 6522 |
Gene name | solute carrier family 4 member 2 | |
Synonyms | AE2|BND3L|EPB3L1|HKB3|NBND3 | |
Cytomap | 7q36.1 | |
Type of gene | protein-coding | |
Description | anion exchange protein 2anion exchanger 2 type aanion exchanger 2 type b1anion exchanger 2 type b2erythrocyte membrane protein band 3-like 1non-erythroid band 3-like proteinsolute carrier family 4 (anion exchanger), member 2 | |
Modification date | 20210518 | |
UniProtAcc | P04920 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for SLC4A2 |
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CAediting_611631(151068539, +), CAediting_611632(151068543, +), CAediting_611633(151068584, +), CAediting_611634(151068594, +), CAediting_611635(151068599, +), CAediting_611636(151068624, +), CAediting_611637(151068645, +), CAediting_611638(151068646, +), CAediting_611639(151068649, +), CAediting_611640(151068655, +), CAediting_611641(151068656, +), CAediting_611642(151068659, +), CAediting_611643(151068661, +), CAediting_611644(151068675, +), CAediting_611645(151068685, +), CAediting_611646(151068686, +), CAediting_611647(151068700, +), CAediting_611648(151068717, +), CAediting_611649(151068729, +), CAediting_611650(151068741, +), CAediting_611651(151068742, +), CAediting_611652(151068781, +), CAediting_611653(151068782, +), CAediting_611654(151068783, +), CAediting_611655(151068792, +), CAediting_611656(151068794, +), CAediting_611657(151068796, +), CAediting_611658(151068884, +), CAediting_611659(151068885, +), CAediting_611660(151068890, +), CAediting_611661(151068928, +), CAediting_611662(151068939, +), CAediting_611663(151068952, +), CAediting_611664(151068955, +), CAediting_611665(151068960, +), CAediting_611666(151068961, +), CAediting_611667(151068962, +), CAediting_611668(151068973, +), CAediting_611669(151068986, +), CAediting_611670(151068987, +), CAediting_611671(151068992, +), CAediting_611672(151069008, +), CAediting_611673(151069018, +), CAediting_611674(151069024, +), CAediting_611675(151069028, +), CAediting_611676(151069033, +), CAediting_611677(151069060, +), CAediting_611678(151069084, +), CAediting_611679(151069089, +), CAediting_611680(151069091, +), CAediting_611681(151069094, +), CAediting_611682(151069115, +), CAediting_611683(151069116, +), |
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RNA editing positional annotations for SLC4A2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_611631 | chr7_151068539_+ | intronic |
CAediting_611632 | chr7_151068543_+ | intronic |
CAediting_611633 | chr7_151068584_+ | intronic |
CAediting_611634 | chr7_151068594_+ | intronic |
CAediting_611635 | chr7_151068599_+ | intronic |
CAediting_611636 | chr7_151068624_+ | intronic |
CAediting_611637 | chr7_151068645_+ | intronic |
CAediting_611638 | chr7_151068646_+ | intronic |
CAediting_611639 | chr7_151068649_+ | intronic |
CAediting_611640 | chr7_151068655_+ | intronic |
CAediting_611641 | chr7_151068656_+ | intronic |
CAediting_611642 | chr7_151068659_+ | intronic |
CAediting_611643 | chr7_151068661_+ | intronic |
CAediting_611644 | chr7_151068675_+ | intronic |
CAediting_611645 | chr7_151068685_+ | intronic |
CAediting_611646 | chr7_151068686_+ | intronic |
CAediting_611647 | chr7_151068700_+ | intronic |
CAediting_611648 | chr7_151068717_+ | intronic |
CAediting_611649 | chr7_151068729_+ | intronic |
CAediting_611650 | chr7_151068741_+ | intronic |
CAediting_611651 | chr7_151068742_+ | intronic |
CAediting_611652 | chr7_151068781_+ | intronic |
CAediting_611653 | chr7_151068782_+ | intronic |
CAediting_611654 | chr7_151068783_+ | intronic |
CAediting_611655 | chr7_151068792_+ | intronic |
CAediting_611656 | chr7_151068794_+ | intronic |
CAediting_611657 | chr7_151068796_+ | intronic |
CAediting_611658 | chr7_151068884_+ | intronic |
CAediting_611659 | chr7_151068885_+ | intronic |
CAediting_611660 | chr7_151068890_+ | intronic |
CAediting_611661 | chr7_151068928_+ | intronic |
CAediting_611662 | chr7_151068939_+ | intronic |
CAediting_611663 | chr7_151068952_+ | intronic |
CAediting_611664 | chr7_151068955_+ | intronic |
CAediting_611665 | chr7_151068960_+ | intronic |
CAediting_611666 | chr7_151068961_+ | intronic |
CAediting_611667 | chr7_151068962_+ | intronic |
CAediting_611668 | chr7_151068973_+ | intronic |
CAediting_611669 | chr7_151068986_+ | intronic |
CAediting_611670 | chr7_151068987_+ | intronic |
CAediting_611671 | chr7_151068992_+ | intronic |
CAediting_611672 | chr7_151069008_+ | intronic |
CAediting_611673 | chr7_151069018_+ | intronic |
CAediting_611674 | chr7_151069024_+ | intronic |
CAediting_611675 | chr7_151069028_+ | intronic |
CAediting_611676 | chr7_151069033_+ | intronic |
CAediting_611677 | chr7_151069060_+ | intronic |
CAediting_611678 | chr7_151069084_+ | intronic |
CAediting_611679 | chr7_151069089_+ | intronic |
CAediting_611680 | chr7_151069091_+ | intronic |
CAediting_611681 | chr7_151069094_+ | intronic |
CAediting_611682 | chr7_151069115_+ | intronic |
CAediting_611683 | chr7_151069116_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_611631 | chr7_151068539_+ | SINE | Alu | AluJb |
CAediting_611632 | chr7_151068543_+ | SINE | Alu | AluJb |
CAediting_611633 | chr7_151068584_+ | SINE | Alu | AluJb |
CAediting_611634 | chr7_151068594_+ | SINE | Alu | AluJb |
CAediting_611635 | chr7_151068599_+ | SINE | Alu | AluJb |
CAediting_611636 | chr7_151068624_+ | SINE | Alu | AluJb |
CAediting_611637 | chr7_151068645_+ | SINE | Alu | AluJb |
CAediting_611638 | chr7_151068646_+ | SINE | Alu | AluJb |
CAediting_611639 | chr7_151068649_+ | SINE | Alu | AluJb |
CAediting_611640 | chr7_151068655_+ | SINE | Alu | AluJb |
CAediting_611641 | chr7_151068656_+ | SINE | Alu | AluJb |
CAediting_611642 | chr7_151068659_+ | SINE | Alu | AluJb |
CAediting_611643 | chr7_151068661_+ | SINE | Alu | AluJb |
CAediting_611644 | chr7_151068675_+ | SINE | Alu | AluJb |
CAediting_611645 | chr7_151068685_+ | SINE | Alu | AluJb |
CAediting_611646 | chr7_151068686_+ | SINE | Alu | AluJb |
CAediting_611647 | chr7_151068700_+ | SINE | Alu | AluJb |
CAediting_611648 | chr7_151068717_+ | SINE | Alu | AluJb |
CAediting_611649 | chr7_151068729_+ | SINE | Alu | AluJb |
CAediting_611650 | chr7_151068741_+ | SINE | Alu | AluJb |
CAediting_611651 | chr7_151068742_+ | SINE | Alu | AluJb |
CAediting_611652 | chr7_151068781_+ | SINE | Alu | AluJb |
CAediting_611653 | chr7_151068782_+ | SINE | Alu | AluJb |
CAediting_611654 | chr7_151068783_+ | SINE | Alu | AluJb |
CAediting_611655 | chr7_151068792_+ | SINE | Alu | AluJb |
CAediting_611656 | chr7_151068794_+ | SINE | Alu | AluJb |
CAediting_611657 | chr7_151068796_+ | SINE | Alu | AluJb |
CAediting_611658 | chr7_151068884_+ | SINE | Alu | AluY |
CAediting_611659 | chr7_151068885_+ | SINE | Alu | AluY |
CAediting_611660 | chr7_151068890_+ | SINE | Alu | AluY |
CAediting_611661 | chr7_151068928_+ | SINE | Alu | AluY |
CAediting_611662 | chr7_151068939_+ | SINE | Alu | AluY |
CAediting_611663 | chr7_151068952_+ | SINE | Alu | AluY |
CAediting_611664 | chr7_151068955_+ | SINE | Alu | AluY |
CAediting_611665 | chr7_151068960_+ | SINE | Alu | AluY |
CAediting_611666 | chr7_151068961_+ | SINE | Alu | AluY |
CAediting_611667 | chr7_151068962_+ | SINE | Alu | AluY |
CAediting_611668 | chr7_151068973_+ | SINE | Alu | AluY |
CAediting_611669 | chr7_151068986_+ | SINE | Alu | AluY |
CAediting_611670 | chr7_151068987_+ | SINE | Alu | AluY |
CAediting_611671 | chr7_151068992_+ | SINE | Alu | AluY |
CAediting_611672 | chr7_151069008_+ | SINE | Alu | AluY |
CAediting_611673 | chr7_151069018_+ | SINE | Alu | AluY |
CAediting_611674 | chr7_151069024_+ | SINE | Alu | AluY |
CAediting_611675 | chr7_151069028_+ | SINE | Alu | AluY |
CAediting_611676 | chr7_151069033_+ | SINE | Alu | AluY |
CAediting_611677 | chr7_151069060_+ | SINE | Alu | AluY |
CAediting_611678 | chr7_151069084_+ | SINE | Alu | AluY |
CAediting_611679 | chr7_151069089_+ | SINE | Alu | AluY |
CAediting_611680 | chr7_151069091_+ | SINE | Alu | AluY |
CAediting_611681 | chr7_151069094_+ | SINE | Alu | AluY |
CAediting_611682 | chr7_151069115_+ | SINE | Alu | AluY |
CAediting_611683 | chr7_151069116_+ | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for SLC4A2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLC4A2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for SLC4A2 |
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The effects of the RNA editing to the miRNA binding sites for SLC4A2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_468389 | chr6_31355314_- | ENSG00000164889.11 | ENST00000485713 | hsa-miR-6891-5p | 151076446 | 151076452 | 7mer-m8 | 151076435 | 151076453 | 151 | -24.63 |
CAediting_468389 | chr6_31355314_- | ENSG00000164889.11 | ENST00000392826 | hsa-miR-6891-5p | 151076446 | 151076452 | 7mer-m8 | 151076435 | 151076453 | 151 | -24.63 |
CAediting_468389 | chr6_31355314_- | ENSG00000164889.11 | ENST00000461735 | hsa-miR-6891-5p | 151076446 | 151076452 | 7mer-m8 | 151076435 | 151076453 | 151 | -24.63 |
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The effects of the RNA editing to the stability of the RNA structures for SLC4A2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SLC4A2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
STAD | CAediting_611664 | chr7_151068955_+ | . | . | . | . | 0.0283362879059861 | 0.270014687205235 |
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Relation with cancer stages for SLC4A2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SLC4A2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for SLC4A2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLC4A2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
SLC4A2 | C0008312 | Primary biliary cirrhosis | 1 | CTD_human |
SLC4A2 | C0008340 | Choledochal Cyst | 1 | CTD_human |
SLC4A2 | C0009439 | Choledochal Cyst, Type I | 1 | CTD_human |
SLC4A2 | C0023892 | Biliary cirrhosis | 1 | CTD_human |
SLC4A2 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
SLC4A2 | C0085548 | Autosomal Recessive Polycystic Kidney Disease | 1 | CTD_human |
SLC4A2 | C0238065 | Secondary Biliary Cholangitis | 1 | CTD_human |
SLC4A2 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
SLC4A2 | C1257796 | Choledochal Cyst, Type II | 1 | CTD_human |
SLC4A2 | C1257797 | Choledochal Cyst, Type III | 1 | CTD_human |
SLC4A2 | C1257798 | Choledochal Cyst, Type IV | 1 | CTD_human |
SLC4A2 | C1257799 | Choledochal Cyst, Type V | 1 | CTD_human |
SLC4A2 | C4551595 | Biliary Cirrhosis, Primary, 1 | 1 | CTD_human |