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Editing gene: UPF3A (CAeditome ID:65110)

Gene summary for UPF3A

Gene summary

Gene information	Gene symbol	UPF3A
	Gene ID	65110
	Gene name	UPF3A regulator of nonsense mediated mRNA decay
	Synonyms	HUPF3A\|RENT3A\|UPF3
	Cytomap	13q34
	Type of gene	protein-coding
	Description	regulator of nonsense transcripts 3AUPF3 regulator of nonsense transcripts homolog AhUpf3nonsense mRNA reducing factor 3Aup-frameshift suppressor 3 homolog A
	Modification date	20210518
	UniProtAcc	Q9H1J1
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
UPF3A	GO:0000184	Regulator of nonsense transcripts 3A	16601204
UPF3A	GO:0042162	Regulator of nonsense transcripts 3A	17916692
UPF3A	GO:0045727	Regulator of nonsense transcripts 3A	16601204
UPF3A	GO:0005654	Regulator of nonsense transcripts 3A	0000052
UPF3A	GO:0005829	Regulator of nonsense transcripts 3A	0000052
UPF3A	GO:0043231	Regulator of nonsense transcripts 3A	0000052
UPF3A	GO:0035145	Regulator of nonsense transcripts 3A	16601204

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RNA A-to-I events for UPF3A

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000169062.13

RNA A-to-I editing events in Cancer.

CAediting_974560(114283046, +), CAediting_974561(114283073, +), CAediting_974562(114283078, +), CAediting_974563(114283103, +), CAediting_974564(114283121, +), CAediting_974565(114283122, +), CAediting_974566(114283141, +), CAediting_974567(114283145, +), CAediting_974568(114283148, +), CAediting_974569(114283155, +), CAediting_974570(114283157, +), CAediting_974571(114283202, +), CAediting_974572(114283229, +), CAediting_974573(114283272, +), CAediting_974574(114283280, +), CAediting_974575(114284092, +), CAediting_974576(114284108, +), CAediting_974577(114284109, +), CAediting_974578(114284114, +), CAediting_974579(114284117, +), CAediting_974580(114284122, +), CAediting_974581(114284130, +), CAediting_974582(114284144, +), CAediting_974583(114284147, +), CAediting_974584(114284152, +), CAediting_974585(114284163, +), CAediting_974586(114284172, +), CAediting_974587(114284175, +), CAediting_974588(114284176, +), CAediting_974589(114284178, +), CAediting_974590(114284184, +), CAediting_974591(114284185, +), CAediting_974592(114284197, +), CAediting_974593(114284200, +), CAediting_974594(114284202, +), CAediting_974595(114284203, +), CAediting_974596(114284204, +), CAediting_974597(114284206, +), CAediting_974598(114284209, +), CAediting_974599(114284215, +), CAediting_974600(114284219, +), CAediting_974601(114284231, +), CAediting_974602(114284241, +), CAediting_974603(114284247, +), CAediting_974604(114284251, +), CAediting_974605(114284257, +), CAediting_974606(114284258, +), CAediting_974607(114284260, +), CAediting_974608(114284264, +), CAediting_974609(114284266, +), CAediting_974610(114284268, +), CAediting_974611(114284271, +), CAediting_974612(114284273, +), CAediting_974613(114284282, +), CAediting_974614(114284283, +), CAediting_974615(114284290, +), CAediting_974616(114284296, +), CAediting_974617(114284332, +), CAediting_974618(114284426, +), CAediting_974619(114284433, +), CAediting_974620(114284447, +), CAediting_974621(114284501, +), CAediting_974622(114284510, +), CAediting_974623(114284578, +), CAediting_974624(114284579, +), CAediting_974625(114284597, +), CAediting_974626(114284619, +), CAediting_974627(114284620, +), CAediting_974628(114284648, +), CAediting_974629(114284662, +), CAediting_974630(114284836, +), CAediting_974631(114284850, +), CAediting_974632(114284862, +), CAediting_974633(114284873, +), CAediting_974634(114284914, +), CAediting_974635(114284916, +), CAediting_974636(114287353, +), CAediting_974637(114287372, +), CAediting_974638(114287375, +), CAediting_974639(114287391, +), CAediting_974640(114287394, +), CAediting_974641(114287412, +), CAediting_974642(114287414, +), CAediting_974643(114287428, +), CAediting_974644(114287429, +), CAediting_974645(114287434, +), CAediting_974646(114287436, +), CAediting_974647(114287437, +), CAediting_974648(114287438, +), CAediting_974649(114287439, +), CAediting_974650(114287440, +), CAediting_974651(114287444, +), CAediting_974652(114287447, +), CAediting_974653(114287476, +), CAediting_974654(114287511, +), CAediting_974655(114287512, +), CAediting_974656(114287519, +), CAediting_974657(114287536, +), CAediting_974658(114287543, +), CAediting_974659(114287572, +), CAediting_974660(114287574, +), CAediting_974661(114287868, +), CAediting_974662(114287870, +), CAediting_974663(114287906, +), CAediting_974664(114287936, +), CAediting_974665(114287946, +), CAediting_974666(114287952, +), CAediting_974667(114287973, +), CAediting_974668(114287979, +), CAediting_974669(114288065, +), CAediting_974670(114288067, +), CAediting_974671(114288079, +), CAediting_974672(114288201, +), CAediting_974673(114289264, +), CAediting_974674(114289270, +), CAediting_974675(114289271, +), CAediting_974676(114289284, +), CAediting_974677(114289315, +), CAediting_974678(114289348, +), CAediting_974679(114289366, +), CAediting_974680(114289370, +), CAediting_974681(114289377, +), CAediting_974682(114289403, +), CAediting_974683(114289409, +), CAediting_974684(114289413, +), CAediting_974685(114289444, +), CAediting_974686(114289445, +), CAediting_974687(114289463, +), CAediting_974688(114289474, +), CAediting_974689(114289479, +), CAediting_974690(114289507, +), CAediting_974691(114290798, +), CAediting_974692(114290833, +), CAediting_974693(114290834, +), CAediting_974694(114290837, +), CAediting_974695(114290863, +), CAediting_974696(114290875, +), CAediting_974697(114290900, +), CAediting_974698(114290963, +), CAediting_974699(114290996, +), CAediting_974700(114290997, +), CAediting_974701(114292825, +), CAediting_974702(114292951, +), CAediting_974703(114292965, +), CAediting_974704(114292974, +), CAediting_974705(114292978, +), CAediting_974706(114292992, +), CAediting_974707(114292993, +), CAediting_974708(114292997, +), CAediting_974709(114293122, +), CAediting_974710(114293129, +), CAediting_974711(114293145, +), CAediting_974712(114293164, +), CAediting_974713(114293177, +), CAediting_974714(114293200, +), CAediting_974715(114293213, +), CAediting_974716(114293277, +), CAediting_974717(114293286, +), CAediting_974718(114293290, +), CAediting_974719(114293329, +), CAediting_974720(114293851, +), CAediting_974721(114293866, +), CAediting_974722(114293867, +), CAediting_974723(114293883, +), CAediting_974724(114293893, +), CAediting_974725(114293907, +), CAediting_974726(114293920, +), CAediting_974727(114293921, +), CAediting_974728(114293926, +), CAediting_974729(114293938, +), CAediting_974730(114293968, +), CAediting_974731(114293986, +), CAediting_974732(114293993, +), CAediting_974733(114294018, +), CAediting_974734(114294019, +), CAediting_974735(114294023, +), CAediting_974736(114294044, +), CAediting_974737(114294045, +), CAediting_974738(114294046, +), CAediting_974739(114294058, +), CAediting_974740(114294060, +), CAediting_974741(114294067, +), CAediting_974742(114294074, +), CAediting_974743(114294292, +), CAediting_974744(114294308, +), CAediting_974745(114294332, +), CAediting_974746(114294338, +), CAediting_974747(114294343, +), CAediting_974748(114294348, +), CAediting_974749(114294355, +), CAediting_974750(114294362, +), CAediting_974751(114294368, +), CAediting_974752(114294369, +), CAediting_974753(114294373, +), CAediting_974754(114294386, +), CAediting_974755(114294415, +), CAediting_974756(114294449, +), CAediting_974757(114294523, +), CAediting_974758(114294731, +), CAediting_974759(114294745, +), CAediting_974760(114294746, +), CAediting_974761(114294809, +), CAediting_974762(114294858, +), CAediting_974763(114294901, +), CAediting_974764(114294991, +), CAediting_974765(114295008, +), CAediting_974766(114295014, +), CAediting_974767(114295018, +), CAediting_974768(114295032, +), CAediting_974769(114295053, +), CAediting_974770(114295057, +), CAediting_974771(114295062, +), CAediting_974772(114295131, +), CAediting_974773(114295187, +), CAediting_974774(114295289, +), CAediting_974775(114296173, +), CAediting_974776(114296236, +), CAediting_974777(114296262, +), CAediting_974778(114296268, +), CAediting_974779(114296272, +), CAediting_974780(114296285, +), CAediting_974781(114296289, +), CAediting_974782(114296292, +), CAediting_974783(114296304, +), CAediting_974784(114296321, +), CAediting_974785(114296327, +), CAediting_974786(114297731, +), CAediting_974787(114297887, +), CAediting_974788(114297929, +), CAediting_974789(114297933, +), CAediting_974790(114298003, +), CAediting_974791(114298253, +), CAediting_974792(114298425, +), CAediting_974793(114298429, +), CAediting_974794(114298455, +), CAediting_974795(114298522, +), CAediting_974796(114301342, +), CAediting_974797(114301369, +),

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RNA editing positional annotations for UPF3A using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_974560	chr13_114283046_+	ncRNA_exonic
CAediting_974561	chr13_114283073_+	ncRNA_exonic
CAediting_974562	chr13_114283078_+	ncRNA_exonic
CAediting_974563	chr13_114283103_+	ncRNA_exonic
CAediting_974564	chr13_114283121_+	ncRNA_exonic
CAediting_974565	chr13_114283122_+	ncRNA_exonic
CAediting_974566	chr13_114283141_+	ncRNA_exonic
CAediting_974567	chr13_114283145_+	ncRNA_exonic
CAediting_974568	chr13_114283148_+	ncRNA_exonic
CAediting_974569	chr13_114283155_+	ncRNA_exonic
CAediting_974570	chr13_114283157_+	ncRNA_exonic
CAediting_974571	chr13_114283202_+	ncRNA_exonic
CAediting_974572	chr13_114283229_+	ncRNA_exonic
CAediting_974573	chr13_114283272_+	ncRNA_exonic
CAediting_974574	chr13_114283280_+	ncRNA_exonic
CAediting_974575	chr13_114284092_+	ncRNA_intronic
CAediting_974576	chr13_114284108_+	ncRNA_intronic
CAediting_974577	chr13_114284109_+	ncRNA_intronic
CAediting_974578	chr13_114284114_+	ncRNA_intronic
CAediting_974579	chr13_114284117_+	ncRNA_intronic
CAediting_974580	chr13_114284122_+	ncRNA_intronic
CAediting_974581	chr13_114284130_+	ncRNA_intronic
CAediting_974582	chr13_114284144_+	ncRNA_intronic
CAediting_974583	chr13_114284147_+	ncRNA_intronic
CAediting_974584	chr13_114284152_+	ncRNA_intronic
CAediting_974585	chr13_114284163_+	ncRNA_intronic
CAediting_974586	chr13_114284172_+	ncRNA_intronic
CAediting_974587	chr13_114284175_+	ncRNA_intronic
CAediting_974588	chr13_114284176_+	ncRNA_intronic
CAediting_974589	chr13_114284178_+	ncRNA_intronic
CAediting_974590	chr13_114284184_+	ncRNA_intronic
CAediting_974591	chr13_114284185_+	ncRNA_intronic
CAediting_974592	chr13_114284197_+	ncRNA_intronic
CAediting_974593	chr13_114284200_+	ncRNA_intronic
CAediting_974594	chr13_114284202_+	ncRNA_intronic
CAediting_974595	chr13_114284203_+	ncRNA_intronic
CAediting_974596	chr13_114284204_+	ncRNA_intronic
CAediting_974597	chr13_114284206_+	ncRNA_intronic
CAediting_974598	chr13_114284209_+	ncRNA_intronic
CAediting_974599	chr13_114284215_+	ncRNA_intronic
CAediting_974600	chr13_114284219_+	ncRNA_intronic
CAediting_974601	chr13_114284231_+	ncRNA_intronic
CAediting_974602	chr13_114284241_+	ncRNA_intronic
CAediting_974603	chr13_114284247_+	ncRNA_intronic
CAediting_974604	chr13_114284251_+	ncRNA_intronic
CAediting_974605	chr13_114284257_+	ncRNA_intronic
CAediting_974606	chr13_114284258_+	ncRNA_intronic
CAediting_974607	chr13_114284260_+	ncRNA_intronic
CAediting_974608	chr13_114284264_+	ncRNA_intronic
CAediting_974609	chr13_114284266_+	ncRNA_intronic
CAediting_974610	chr13_114284268_+	ncRNA_intronic
CAediting_974611	chr13_114284271_+	ncRNA_intronic
CAediting_974612	chr13_114284273_+	ncRNA_intronic
CAediting_974613	chr13_114284282_+	ncRNA_intronic
CAediting_974614	chr13_114284283_+	ncRNA_intronic
CAediting_974615	chr13_114284290_+	ncRNA_intronic
CAediting_974616	chr13_114284296_+	ncRNA_intronic
CAediting_974617	chr13_114284332_+	ncRNA_intronic
CAediting_974618	chr13_114284426_+	ncRNA_intronic
CAediting_974619	chr13_114284433_+	ncRNA_intronic
CAediting_974620	chr13_114284447_+	ncRNA_intronic
CAediting_974621	chr13_114284501_+	ncRNA_intronic
CAediting_974622	chr13_114284510_+	ncRNA_intronic
CAediting_974623	chr13_114284578_+	ncRNA_intronic
CAediting_974624	chr13_114284579_+	ncRNA_intronic
CAediting_974625	chr13_114284597_+	ncRNA_intronic
CAediting_974626	chr13_114284619_+	ncRNA_intronic
CAediting_974627	chr13_114284620_+	ncRNA_intronic
CAediting_974628	chr13_114284648_+	ncRNA_intronic
CAediting_974629	chr13_114284662_+	ncRNA_intronic
CAediting_974630	chr13_114284836_+	ncRNA_intronic
CAediting_974631	chr13_114284850_+	ncRNA_intronic
CAediting_974632	chr13_114284862_+	ncRNA_intronic
CAediting_974633	chr13_114284873_+	ncRNA_intronic
CAediting_974634	chr13_114284914_+	ncRNA_intronic
CAediting_974635	chr13_114284916_+	ncRNA_intronic
CAediting_974636	chr13_114287353_+	ncRNA_exonic
CAediting_974637	chr13_114287372_+	ncRNA_exonic
CAediting_974638	chr13_114287375_+	ncRNA_exonic
CAediting_974639	chr13_114287391_+	ncRNA_exonic
CAediting_974640	chr13_114287394_+	ncRNA_exonic
CAediting_974641	chr13_114287412_+	ncRNA_exonic
CAediting_974642	chr13_114287414_+	ncRNA_exonic
CAediting_974643	chr13_114287428_+	ncRNA_exonic
CAediting_974644	chr13_114287429_+	ncRNA_exonic
CAediting_974645	chr13_114287434_+	ncRNA_exonic
CAediting_974646	chr13_114287436_+	ncRNA_exonic
CAediting_974647	chr13_114287437_+	ncRNA_exonic
CAediting_974648	chr13_114287438_+	ncRNA_exonic
CAediting_974649	chr13_114287439_+	ncRNA_exonic
CAediting_974650	chr13_114287440_+	ncRNA_exonic
CAediting_974651	chr13_114287444_+	ncRNA_exonic
CAediting_974652	chr13_114287447_+	ncRNA_exonic
CAediting_974653	chr13_114287476_+	ncRNA_exonic
CAediting_974654	chr13_114287511_+	ncRNA_exonic
CAediting_974655	chr13_114287512_+	ncRNA_exonic
CAediting_974656	chr13_114287519_+	ncRNA_exonic
CAediting_974657	chr13_114287536_+	ncRNA_exonic
CAediting_974658	chr13_114287543_+	ncRNA_exonic
CAediting_974659	chr13_114287572_+	ncRNA_exonic
CAediting_974660	chr13_114287574_+	ncRNA_exonic
CAediting_974661	chr13_114287868_+	ncRNA_intronic
CAediting_974662	chr13_114287870_+	ncRNA_intronic
CAediting_974663	chr13_114287906_+	ncRNA_intronic
CAediting_974664	chr13_114287936_+	ncRNA_intronic
CAediting_974665	chr13_114287946_+	ncRNA_intronic
CAediting_974666	chr13_114287952_+	ncRNA_intronic
CAediting_974667	chr13_114287973_+	ncRNA_intronic
CAediting_974668	chr13_114287979_+	ncRNA_intronic
CAediting_974669	chr13_114288065_+	ncRNA_intronic
CAediting_974670	chr13_114288067_+	ncRNA_intronic
CAediting_974671	chr13_114288079_+	ncRNA_intronic
CAediting_974672	chr13_114288201_+	ncRNA_intronic
CAediting_974673	chr13_114289264_+	ncRNA_intronic
CAediting_974674	chr13_114289270_+	ncRNA_intronic
CAediting_974675	chr13_114289271_+	ncRNA_intronic
CAediting_974676	chr13_114289284_+	ncRNA_intronic
CAediting_974677	chr13_114289315_+	ncRNA_intronic
CAediting_974678	chr13_114289348_+	ncRNA_intronic
CAediting_974679	chr13_114289366_+	ncRNA_intronic
CAediting_974680	chr13_114289370_+	ncRNA_intronic
CAediting_974681	chr13_114289377_+	ncRNA_intronic
CAediting_974682	chr13_114289403_+	ncRNA_intronic
CAediting_974683	chr13_114289409_+	ncRNA_intronic
CAediting_974684	chr13_114289413_+	ncRNA_intronic
CAediting_974685	chr13_114289444_+	ncRNA_intronic
CAediting_974686	chr13_114289445_+	ncRNA_intronic
CAediting_974687	chr13_114289463_+	ncRNA_intronic
CAediting_974688	chr13_114289474_+	ncRNA_intronic
CAediting_974689	chr13_114289479_+	ncRNA_intronic
CAediting_974690	chr13_114289507_+	ncRNA_intronic
CAediting_974691	chr13_114290798_+	ncRNA_intronic
CAediting_974692	chr13_114290833_+	ncRNA_intronic
CAediting_974693	chr13_114290834_+	ncRNA_intronic
CAediting_974694	chr13_114290837_+	ncRNA_intronic
CAediting_974695	chr13_114290863_+	ncRNA_intronic
CAediting_974696	chr13_114290875_+	ncRNA_intronic
CAediting_974697	chr13_114290900_+	ncRNA_intronic
CAediting_974698	chr13_114290963_+	ncRNA_intronic
CAediting_974699	chr13_114290996_+	ncRNA_intronic
CAediting_974700	chr13_114290997_+	ncRNA_intronic
CAediting_974701	chr13_114292825_+	ncRNA_intronic
CAediting_974702	chr13_114292951_+	ncRNA_intronic
CAediting_974703	chr13_114292965_+	ncRNA_intronic
CAediting_974704	chr13_114292974_+	ncRNA_intronic
CAediting_974705	chr13_114292978_+	ncRNA_intronic
CAediting_974706	chr13_114292992_+	ncRNA_intronic
CAediting_974707	chr13_114292993_+	ncRNA_intronic
CAediting_974708	chr13_114292997_+	ncRNA_intronic
CAediting_974709	chr13_114293122_+	ncRNA_intronic
CAediting_974710	chr13_114293129_+	ncRNA_intronic
CAediting_974711	chr13_114293145_+	ncRNA_intronic
CAediting_974712	chr13_114293164_+	ncRNA_intronic
CAediting_974713	chr13_114293177_+	ncRNA_intronic
CAediting_974714	chr13_114293200_+	ncRNA_intronic
CAediting_974715	chr13_114293213_+	ncRNA_intronic
CAediting_974716	chr13_114293277_+	ncRNA_intronic
CAediting_974717	chr13_114293286_+	ncRNA_intronic
CAediting_974718	chr13_114293290_+	ncRNA_intronic
CAediting_974719	chr13_114293329_+	ncRNA_intronic
CAediting_974720	chr13_114293851_+	ncRNA_intronic
CAediting_974721	chr13_114293866_+	ncRNA_intronic
CAediting_974722	chr13_114293867_+	ncRNA_intronic
CAediting_974723	chr13_114293883_+	ncRNA_intronic
CAediting_974724	chr13_114293893_+	ncRNA_intronic
CAediting_974725	chr13_114293907_+	ncRNA_intronic
CAediting_974726	chr13_114293920_+	ncRNA_intronic
CAediting_974727	chr13_114293921_+	ncRNA_intronic
CAediting_974728	chr13_114293926_+	ncRNA_intronic
CAediting_974729	chr13_114293938_+	ncRNA_intronic
CAediting_974730	chr13_114293968_+	ncRNA_intronic
CAediting_974731	chr13_114293986_+	ncRNA_intronic
CAediting_974732	chr13_114293993_+	ncRNA_intronic
CAediting_974733	chr13_114294018_+	ncRNA_intronic
CAediting_974734	chr13_114294019_+	ncRNA_intronic
CAediting_974735	chr13_114294023_+	ncRNA_intronic
CAediting_974736	chr13_114294044_+	ncRNA_intronic
CAediting_974737	chr13_114294045_+	ncRNA_intronic
CAediting_974738	chr13_114294046_+	ncRNA_intronic
CAediting_974739	chr13_114294058_+	ncRNA_intronic
CAediting_974740	chr13_114294060_+	ncRNA_intronic
CAediting_974741	chr13_114294067_+	ncRNA_intronic
CAediting_974742	chr13_114294074_+	ncRNA_intronic
CAediting_974743	chr13_114294292_+	ncRNA_intronic
CAediting_974744	chr13_114294308_+	ncRNA_intronic
CAediting_974745	chr13_114294332_+	ncRNA_intronic
CAediting_974746	chr13_114294338_+	ncRNA_intronic
CAediting_974747	chr13_114294343_+	ncRNA_intronic
CAediting_974748	chr13_114294348_+	ncRNA_intronic
CAediting_974749	chr13_114294355_+	ncRNA_intronic
CAediting_974750	chr13_114294362_+	ncRNA_intronic
CAediting_974751	chr13_114294368_+	ncRNA_intronic
CAediting_974752	chr13_114294369_+	ncRNA_intronic
CAediting_974753	chr13_114294373_+	ncRNA_intronic
CAediting_974754	chr13_114294386_+	ncRNA_intronic
CAediting_974755	chr13_114294415_+	ncRNA_intronic
CAediting_974756	chr13_114294449_+	ncRNA_intronic
CAediting_974757	chr13_114294523_+	ncRNA_intronic
CAediting_974758	chr13_114294731_+	ncRNA_intronic
CAediting_974759	chr13_114294745_+	ncRNA_intronic
CAediting_974760	chr13_114294746_+	ncRNA_intronic
CAediting_974761	chr13_114294809_+	ncRNA_intronic
CAediting_974762	chr13_114294858_+	ncRNA_intronic
CAediting_974763	chr13_114294901_+	ncRNA_intronic
CAediting_974764	chr13_114294991_+	ncRNA_intronic
CAediting_974765	chr13_114295008_+	ncRNA_intronic
CAediting_974766	chr13_114295014_+	ncRNA_intronic
CAediting_974767	chr13_114295018_+	ncRNA_intronic
CAediting_974768	chr13_114295032_+	ncRNA_intronic
CAediting_974769	chr13_114295053_+	ncRNA_intronic
CAediting_974770	chr13_114295057_+	ncRNA_intronic
CAediting_974771	chr13_114295062_+	ncRNA_intronic
CAediting_974772	chr13_114295131_+	ncRNA_intronic
CAediting_974773	chr13_114295187_+	ncRNA_intronic
CAediting_974774	chr13_114295289_+	ncRNA_intronic
CAediting_974775	chr13_114296173_+	ncRNA_intronic
CAediting_974776	chr13_114296236_+	ncRNA_intronic
CAediting_974777	chr13_114296262_+	ncRNA_intronic
CAediting_974778	chr13_114296268_+	ncRNA_intronic
CAediting_974779	chr13_114296272_+	ncRNA_intronic
CAediting_974780	chr13_114296285_+	ncRNA_intronic
CAediting_974781	chr13_114296289_+	ncRNA_intronic
CAediting_974782	chr13_114296292_+	ncRNA_intronic
CAediting_974783	chr13_114296304_+	ncRNA_intronic
CAediting_974784	chr13_114296321_+	ncRNA_intronic
CAediting_974785	chr13_114296327_+	ncRNA_intronic
CAediting_974786	chr13_114297731_+	ncRNA_intronic
CAediting_974787	chr13_114297887_+	ncRNA_intronic
CAediting_974788	chr13_114297929_+	ncRNA_intronic
CAediting_974789	chr13_114297933_+	ncRNA_intronic
CAediting_974790	chr13_114298003_+	ncRNA_intronic
CAediting_974791	chr13_114298253_+	ncRNA_intronic
CAediting_974792	chr13_114298425_+	ncRNA_intronic
CAediting_974793	chr13_114298429_+	ncRNA_intronic
CAediting_974794	chr13_114298455_+	ncRNA_intronic
CAediting_974795	chr13_114298522_+	ncRNA_intronic
CAediting_974796	chr13_114301342_+	ncRNA_intronic
CAediting_974797	chr13_114301369_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_974560	chr13_114283046_+	SINE	Alu	AluJr
CAediting_974561	chr13_114283073_+	SINE	Alu	AluJr
CAediting_974562	chr13_114283078_+	SINE	Alu	AluJr
CAediting_974563	chr13_114283103_+	SINE	Alu	AluJr
CAediting_974564	chr13_114283121_+	SINE	Alu	AluJr
CAediting_974565	chr13_114283122_+	SINE	Alu	AluJr
CAediting_974566	chr13_114283141_+	SINE	Alu	AluJr
CAediting_974567	chr13_114283145_+	SINE	Alu	AluJr
CAediting_974568	chr13_114283148_+	SINE	Alu	AluJr
CAediting_974569	chr13_114283155_+	SINE	Alu	AluJr
CAediting_974570	chr13_114283157_+	SINE	Alu	AluJr
CAediting_974571	chr13_114283202_+	SINE	Alu	AluJr
CAediting_974572	chr13_114283229_+	SINE	Alu	AluJr
CAediting_974573	chr13_114283272_+	SINE	Alu	AluJr
CAediting_974574	chr13_114283280_+	SINE	Alu	AluJr
CAediting_974575	chr13_114284092_+	SINE	Alu	AluSg
CAediting_974576	chr13_114284108_+	SINE	Alu	AluSg
CAediting_974577	chr13_114284109_+	SINE	Alu	AluSg
CAediting_974578	chr13_114284114_+	SINE	Alu	AluSg
CAediting_974579	chr13_114284117_+	SINE	Alu	AluSg
CAediting_974580	chr13_114284122_+	SINE	Alu	AluSg
CAediting_974581	chr13_114284130_+	SINE	Alu	AluSg
CAediting_974582	chr13_114284144_+	SINE	Alu	AluSg
CAediting_974583	chr13_114284147_+	SINE	Alu	AluSg
CAediting_974584	chr13_114284152_+	SINE	Alu	AluSg
CAediting_974585	chr13_114284163_+	SINE	Alu	AluSg
CAediting_974586	chr13_114284172_+	SINE	Alu	AluSg
CAediting_974587	chr13_114284175_+	SINE	Alu	AluSg
CAediting_974588	chr13_114284176_+	SINE	Alu	AluSg
CAediting_974589	chr13_114284178_+	SINE	Alu	AluSg
CAediting_974590	chr13_114284184_+	SINE	Alu	AluSg
CAediting_974591	chr13_114284185_+	SINE	Alu	AluSg
CAediting_974592	chr13_114284197_+	SINE	Alu	AluSg
CAediting_974593	chr13_114284200_+	SINE	Alu	AluSg
CAediting_974594	chr13_114284202_+	SINE	Alu	AluSg
CAediting_974595	chr13_114284203_+	SINE	Alu	AluSg
CAediting_974596	chr13_114284204_+	SINE	Alu	AluSg
CAediting_974597	chr13_114284206_+	SINE	Alu	AluSg
CAediting_974598	chr13_114284209_+	SINE	Alu	AluSg
CAediting_974599	chr13_114284215_+	SINE	Alu	AluSg
CAediting_974600	chr13_114284219_+	SINE	Alu	AluSg
CAediting_974601	chr13_114284231_+	SINE	Alu	AluSg
CAediting_974602	chr13_114284241_+	SINE	Alu	AluSg
CAediting_974603	chr13_114284247_+	SINE	Alu	AluSg
CAediting_974604	chr13_114284251_+	SINE	Alu	AluSg
CAediting_974605	chr13_114284257_+	SINE	Alu	AluSg
CAediting_974606	chr13_114284258_+	SINE	Alu	AluSg
CAediting_974607	chr13_114284260_+	SINE	Alu	AluSg
CAediting_974608	chr13_114284264_+	SINE	Alu	AluSg
CAediting_974609	chr13_114284266_+	SINE	Alu	AluSg
CAediting_974610	chr13_114284268_+	SINE	Alu	AluSg
CAediting_974611	chr13_114284271_+	SINE	Alu	AluSg
CAediting_974612	chr13_114284273_+	SINE	Alu	AluSg
CAediting_974613	chr13_114284282_+	SINE	Alu	AluSg
CAediting_974614	chr13_114284283_+	SINE	Alu	AluSg
CAediting_974615	chr13_114284290_+	SINE	Alu	AluSg
CAediting_974616	chr13_114284296_+	SINE	Alu	AluSg
CAediting_974617	chr13_114284332_+	SINE	Alu	AluSg
CAediting_974618	chr13_114284426_+	SINE	Alu	AluSz
CAediting_974619	chr13_114284433_+	SINE	Alu	AluSz
CAediting_974620	chr13_114284447_+	SINE	Alu	AluSz
CAediting_974621	chr13_114284501_+	SINE	Alu	AluSz
CAediting_974622	chr13_114284510_+	SINE	Alu	AluSz
CAediting_974623	chr13_114284578_+	SINE	Alu	AluSz
CAediting_974624	chr13_114284579_+	SINE	Alu	AluSz
CAediting_974625	chr13_114284597_+	SINE	Alu	AluSz
CAediting_974626	chr13_114284619_+	SINE	Alu	AluSz
CAediting_974627	chr13_114284620_+	SINE	Alu	AluSz
CAediting_974628	chr13_114284648_+	SINE	Alu	AluSz
CAediting_974629	chr13_114284662_+	SINE	Alu	AluSz
CAediting_974630	chr13_114284836_+	SINE	Alu	FLAM_C
CAediting_974631	chr13_114284850_+	SINE	Alu	FLAM_C
CAediting_974632	chr13_114284862_+	SINE	Alu	FLAM_C
CAediting_974633	chr13_114284873_+	SINE	Alu	FLAM_C
CAediting_974634	chr13_114284914_+	SINE	Alu	FLAM_C
CAediting_974635	chr13_114284916_+	SINE	Alu	FLAM_C
CAediting_974636	chr13_114287353_+	SINE	Alu	AluSx3
CAediting_974637	chr13_114287372_+	SINE	Alu	AluSx3
CAediting_974638	chr13_114287375_+	SINE	Alu	AluSx3
CAediting_974639	chr13_114287391_+	SINE	Alu	AluSx3
CAediting_974640	chr13_114287394_+	SINE	Alu	AluSx3
CAediting_974641	chr13_114287412_+	SINE	Alu	AluSx3
CAediting_974642	chr13_114287414_+	SINE	Alu	AluSx3
CAediting_974643	chr13_114287428_+	SINE	Alu	AluSx3
CAediting_974644	chr13_114287429_+	SINE	Alu	AluSx3
CAediting_974645	chr13_114287434_+	SINE	Alu	AluSx3
CAediting_974646	chr13_114287436_+	SINE	Alu	AluSx3
CAediting_974647	chr13_114287437_+	SINE	Alu	AluSx3
CAediting_974648	chr13_114287438_+	SINE	Alu	AluSx3
CAediting_974649	chr13_114287439_+	SINE	Alu	AluSx3
CAediting_974650	chr13_114287440_+	SINE	Alu	AluSx3
CAediting_974651	chr13_114287444_+	SINE	Alu	AluSx3
CAediting_974652	chr13_114287447_+	SINE	Alu	AluSx3
CAediting_974653	chr13_114287476_+	SINE	Alu	AluSx3
CAediting_974654	chr13_114287511_+	SINE	Alu	AluSx3
CAediting_974655	chr13_114287512_+	SINE	Alu	AluSx3
CAediting_974656	chr13_114287519_+	SINE	Alu	AluSx3
CAediting_974657	chr13_114287536_+	SINE	Alu	AluSx3
CAediting_974658	chr13_114287543_+	SINE	Alu	AluSx3
CAediting_974659	chr13_114287572_+	SINE	Alu	AluSx3
CAediting_974660	chr13_114287574_+	SINE	Alu	AluSx3
CAediting_974661	chr13_114287868_+	SINE	Alu	AluSx1
CAediting_974662	chr13_114287870_+	SINE	Alu	AluSx1
CAediting_974663	chr13_114287906_+	SINE	Alu	AluSx1
CAediting_974664	chr13_114287936_+	SINE	Alu	AluSx1
CAediting_974665	chr13_114287946_+	SINE	Alu	AluSx1
CAediting_974666	chr13_114287952_+	SINE	Alu	AluSx1
CAediting_974667	chr13_114287973_+	SINE	Alu	AluSx1
CAediting_974668	chr13_114287979_+	SINE	Alu	AluSx1
CAediting_974669	chr13_114288065_+	SINE	Alu	AluSx1
CAediting_974670	chr13_114288067_+	SINE	Alu	AluSx1
CAediting_974671	chr13_114288079_+	SINE	Alu	AluSx1
CAediting_974673	chr13_114289264_+	SINE	Alu	AluSc
CAediting_974674	chr13_114289270_+	SINE	Alu	AluSc
CAediting_974675	chr13_114289271_+	SINE	Alu	AluSc
CAediting_974676	chr13_114289284_+	SINE	Alu	AluSc
CAediting_974677	chr13_114289315_+	SINE	Alu	AluSc
CAediting_974678	chr13_114289348_+	SINE	Alu	AluSc
CAediting_974679	chr13_114289366_+	SINE	Alu	AluSc
CAediting_974680	chr13_114289370_+	SINE	Alu	AluSc
CAediting_974681	chr13_114289377_+	SINE	Alu	AluSc
CAediting_974682	chr13_114289403_+	SINE	Alu	AluSc
CAediting_974683	chr13_114289409_+	SINE	Alu	AluSc
CAediting_974684	chr13_114289413_+	SINE	Alu	AluSc
CAediting_974685	chr13_114289444_+	SINE	Alu	AluSc
CAediting_974686	chr13_114289445_+	SINE	Alu	AluSc
CAediting_974687	chr13_114289463_+	SINE	Alu	AluSc
CAediting_974688	chr13_114289474_+	SINE	Alu	AluSc
CAediting_974689	chr13_114289479_+	SINE	Alu	AluSc
CAediting_974690	chr13_114289507_+	SINE	Alu	AluSc
CAediting_974691	chr13_114290798_+	SINE	Alu	AluSp
CAediting_974692	chr13_114290833_+	SINE	Alu	AluSp
CAediting_974693	chr13_114290834_+	SINE	Alu	AluSp
CAediting_974694	chr13_114290837_+	SINE	Alu	AluSp
CAediting_974695	chr13_114290863_+	SINE	Alu	AluSp
CAediting_974696	chr13_114290875_+	SINE	Alu	AluSp
CAediting_974697	chr13_114290900_+	SINE	Alu	AluSp
CAediting_974698	chr13_114290963_+	SINE	Alu	AluSp
CAediting_974699	chr13_114290996_+	SINE	Alu	AluSp
CAediting_974700	chr13_114290997_+	SINE	Alu	AluSp
CAediting_974701	chr13_114292825_+	SINE	Alu	AluSg
CAediting_974702	chr13_114292951_+	SINE	Alu	AluSg
CAediting_974703	chr13_114292965_+	SINE	Alu	AluSg
CAediting_974704	chr13_114292974_+	SINE	Alu	AluSg
CAediting_974705	chr13_114292978_+	SINE	Alu	AluSg
CAediting_974706	chr13_114292992_+	SINE	Alu	AluSg
CAediting_974707	chr13_114292993_+	SINE	Alu	AluSg
CAediting_974708	chr13_114292997_+	SINE	Alu	AluSg
CAediting_974709	chr13_114293122_+	SINE	Alu	AluSz
CAediting_974710	chr13_114293129_+	SINE	Alu	AluSz
CAediting_974711	chr13_114293145_+	SINE	Alu	AluSz
CAediting_974712	chr13_114293164_+	SINE	Alu	AluSz
CAediting_974713	chr13_114293177_+	SINE	Alu	AluSz
CAediting_974714	chr13_114293200_+	SINE	Alu	AluSz
CAediting_974715	chr13_114293213_+	SINE	Alu	AluSz
CAediting_974716	chr13_114293277_+	SINE	Alu	AluSz
CAediting_974717	chr13_114293286_+	SINE	Alu	AluSz
CAediting_974718	chr13_114293290_+	SINE	Alu	AluSz
CAediting_974719	chr13_114293329_+	SINE	Alu	AluSz
CAediting_974720	chr13_114293851_+	SINE	Alu	AluJo
CAediting_974721	chr13_114293866_+	SINE	Alu	AluJo
CAediting_974722	chr13_114293867_+	SINE	Alu	AluJo
CAediting_974723	chr13_114293883_+	SINE	Alu	AluJo
CAediting_974724	chr13_114293893_+	SINE	Alu	AluJo
CAediting_974725	chr13_114293907_+	SINE	Alu	AluJo
CAediting_974726	chr13_114293920_+	SINE	Alu	AluJo
CAediting_974727	chr13_114293921_+	SINE	Alu	AluJo
CAediting_974728	chr13_114293926_+	SINE	Alu	AluJo
CAediting_974729	chr13_114293938_+	SINE	Alu	AluJo
CAediting_974730	chr13_114293968_+	SINE	Alu	AluJb
CAediting_974731	chr13_114293986_+	SINE	Alu	AluJb
CAediting_974732	chr13_114293993_+	SINE	Alu	AluJb
CAediting_974733	chr13_114294018_+	SINE	Alu	AluJb
CAediting_974734	chr13_114294019_+	SINE	Alu	AluJb
CAediting_974735	chr13_114294023_+	SINE	Alu	AluJb
CAediting_974736	chr13_114294044_+	SINE	Alu	AluJb
CAediting_974737	chr13_114294045_+	SINE	Alu	AluJb
CAediting_974738	chr13_114294046_+	SINE	Alu	AluJb
CAediting_974739	chr13_114294058_+	SINE	Alu	AluJb
CAediting_974740	chr13_114294060_+	SINE	Alu	AluJb
CAediting_974741	chr13_114294067_+	SINE	Alu	AluJb
CAediting_974742	chr13_114294074_+	SINE	Alu	AluJb
CAediting_974743	chr13_114294292_+	SINE	Alu	AluJb
CAediting_974744	chr13_114294308_+	SINE	Alu	AluJb
CAediting_974745	chr13_114294332_+	SINE	Alu	AluJb
CAediting_974746	chr13_114294338_+	SINE	Alu	AluJb
CAediting_974747	chr13_114294343_+	SINE	Alu	AluJb
CAediting_974748	chr13_114294348_+	SINE	Alu	AluJb
CAediting_974749	chr13_114294355_+	SINE	Alu	AluJb
CAediting_974750	chr13_114294362_+	SINE	Alu	AluJb
CAediting_974751	chr13_114294368_+	SINE	Alu	AluJb
CAediting_974752	chr13_114294369_+	SINE	Alu	AluJb
CAediting_974753	chr13_114294373_+	SINE	Alu	AluJb
CAediting_974754	chr13_114294386_+	SINE	Alu	AluJb
CAediting_974755	chr13_114294415_+	SINE	Alu	AluJb
CAediting_974756	chr13_114294449_+	SINE	Alu	AluJb
CAediting_974757	chr13_114294523_+	SINE	Alu	AluJb
CAediting_974758	chr13_114294731_+	SINE	Alu	AluSc8
CAediting_974759	chr13_114294745_+	SINE	Alu	AluSc8
CAediting_974760	chr13_114294746_+	SINE	Alu	AluSc8
CAediting_974761	chr13_114294809_+	SINE	Alu	AluSc8
CAediting_974762	chr13_114294858_+	SINE	Alu	AluY
CAediting_974763	chr13_114294901_+	SINE	Alu	AluY
CAediting_974764	chr13_114294991_+	SINE	Alu	AluY
CAediting_974765	chr13_114295008_+	SINE	Alu	AluY
CAediting_974766	chr13_114295014_+	SINE	Alu	AluY
CAediting_974767	chr13_114295018_+	SINE	Alu	AluY
CAediting_974768	chr13_114295032_+	SINE	Alu	AluY
CAediting_974769	chr13_114295053_+	SINE	Alu	AluY
CAediting_974770	chr13_114295057_+	SINE	Alu	AluY
CAediting_974771	chr13_114295062_+	SINE	Alu	AluY
CAediting_974772	chr13_114295131_+	SINE	Alu	AluY
CAediting_974775	chr13_114296173_+	SINE	Alu	AluSx4
CAediting_974776	chr13_114296236_+	SINE	Alu	AluSx4
CAediting_974777	chr13_114296262_+	SINE	Alu	AluSx4
CAediting_974778	chr13_114296268_+	SINE	Alu	AluSx4
CAediting_974779	chr13_114296272_+	SINE	Alu	AluSx4
CAediting_974780	chr13_114296285_+	SINE	Alu	AluSx4
CAediting_974781	chr13_114296289_+	SINE	Alu	AluSx4
CAediting_974782	chr13_114296292_+	SINE	Alu	AluSx4
CAediting_974783	chr13_114296304_+	SINE	Alu	AluSx4
CAediting_974784	chr13_114296321_+	SINE	Alu	AluSx4
CAediting_974785	chr13_114296327_+	SINE	Alu	AluSx4
CAediting_974786	chr13_114297731_+	SINE	Alu	AluSg4
CAediting_974787	chr13_114297887_+	SINE	Alu	AluSx4
CAediting_974788	chr13_114297929_+	SINE	Alu	AluSx4
CAediting_974789	chr13_114297933_+	SINE	Alu	AluSx4
CAediting_974790	chr13_114298003_+	SINE	Alu	AluSx4
CAediting_974791	chr13_114298253_+	SINE	Alu	AluSq2
CAediting_974792	chr13_114298425_+	SINE	Alu	AluSx3
CAediting_974793	chr13_114298429_+	SINE	Alu	AluSx3
CAediting_974794	chr13_114298455_+	SINE	Alu	AluSx3
CAediting_974795	chr13_114298522_+	SINE	Alu	AluSx3
CAediting_974796	chr13_114301342_+	SINE	Alu	AluY
CAediting_974797	chr13_114301369_+	SINE	Alu	AluY

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RNA A-to-I editing events in the alternative splicing sites for UPF3A

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_974575	chr13_114284092_+	114284073:114284095	3SS	0+1i	ATATTGGTGGGCCGGGCACAGTG	-18.96	ATATTGGTGGGCCGGGCACGGTG	-10.21
IR	CAediting_974575	chr13_114284092_+	114284073:114284095	3SS	0+1i	ATATTGGTGGGCCGGGCACAGTG	-18.96	ATATTGGTGGGCCGGGCACGGTG	-10.21
MEX_2	CAediting_974575	chr13_114284092_+	114284073:114284095	3SS	0+1i	ATATTGGTGGGCCGGGCACAGTG	-18.96	ATATTGGTGGGCCGGGCACGGTG	-10.21
MEX_1	CAediting_974575	chr13_114284092_+	114284073:114284095	3SS	0+1i	ATATTGGTGGGCCGGGCACAGTG	-18.96	ATATTGGTGGGCCGGGCACGGTG	-10.21
ES	CAediting_974576	chr13_114284108_+	114284095:114284117	3SS	0+7i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTGATCCCAGCA	-13.34
IR	CAediting_974576	chr13_114284108_+	114284095:114284117	3SS	0+7i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTGATCCCAGCA	-13.34
MEX_2	CAediting_974576	chr13_114284108_+	114284095:114284117	3SS	0+7i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTGATCCCAGCA	-13.34
MEX_1	CAediting_974576	chr13_114284108_+	114284095:114284117	3SS	0+7i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTGATCCCAGCA	-13.34
ES	CAediting_974577	chr13_114284109_+	114284095:114284117	3SS	0+6i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAGTCCCAGCA	-18.57
IR	CAediting_974577	chr13_114284109_+	114284095:114284117	3SS	0+6i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAGTCCCAGCA	-18.57
MEX_2	CAediting_974577	chr13_114284109_+	114284095:114284117	3SS	0+6i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAGTCCCAGCA	-18.57
MEX_1	CAediting_974577	chr13_114284109_+	114284095:114284117	3SS	0+6i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAGTCCCAGCA	-18.57
ES	CAediting_974578	chr13_114284114_+	114284095:114284117	3SS	0+1i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAATCCCGGCA	-5.32
IR	CAediting_974578	chr13_114284114_+	114284095:114284117	3SS	0+1i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAATCCCGGCA	-5.32
MEX_2	CAediting_974578	chr13_114284114_+	114284095:114284117	3SS	0+1i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAATCCCGGCA	-5.32
MEX_1	CAediting_974578	chr13_114284114_+	114284095:114284117	3SS	0+1i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAATCCCGGCA	-5.32
ES	CAediting_974579	chr13_114284117_+	114284095:114284117	3SS	3+0i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAATCCCAGCG	-13.88
IR	CAediting_974579	chr13_114284117_+	114284095:114284117	3SS	3+0i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAATCCCAGCG	-13.88
MEX_2	CAediting_974579	chr13_114284117_+	114284095:114284117	3SS	3+0i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAATCCCAGCG	-13.88
MEX_1	CAediting_974579	chr13_114284117_+	114284095:114284117	3SS	3+0i	GGCTCACACCTGTAATCCCAGCA	-14.07	GGCTCACACCTGTAATCCCAGCG	-13.88
ES	CAediting_974792	chr13_114298425_+	114298406:114298428	3SS	0+1i	GGCGCATGCCTGTCGTCCCAGCT	-14.02	GGCGCATGCCTGTCGTCCCGGCT	-5.26
MEX_2	CAediting_974792	chr13_114298425_+	114298406:114298428	3SS	0+1i	GGCGCATGCCTGTCGTCCCAGCT	-14.02	GGCGCATGCCTGTCGTCCCGGCT	-5.26

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000169062.13.UPF3A.

Correlation between RNA A-to-I editing and PSI for ENSG00000169062.13.UPF3A.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for UPF3A

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LGG.CAediting_974602.ENSG00000169062.UPF3A.png
Soverview

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Protein coding region RNA A-to-I editings for UPF3A

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for UPF3A

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1306324	chr19_13836464_-	ENSG00000169062.13	ENST00000375299	hsa-miR-27a-3p	114305764	114305770	7mer-m8	114305751	114305771	159	-18.34
CAediting_1306324	chr19_13836464_-	ENSG00000169062.13	ENST00000351487	hsa-miR-27a-3p	114305764	114305770	7mer-m8	114305751	114305771	159	-18.34

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for UPF3A

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for UPF3A

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_974580	chr13_114284122_+	.	.	6.08090647827592e-05	0.265755158848357	.	.
ESCA	CAediting_974580	chr13_114284122_+	.	.	0.0426683230928267	0.178762086871895	.	.
OV	CAediting_974580	chr13_114284122_+	0.038699548956339	0.143468314113556	.	.	.	.
STAD	CAediting_974602	chr13_114284241_+	.	.	0.00235733919217294	0.228472682409794	.	.
SKCM	CAediting_974602	chr13_114284241_+	.	.	0.00880423357051694	0.252099688526639	.	.
COAD	CAediting_974614	chr13_114284283_+	.	.	.	.	0.0381372462848991	0.220185120249505
STAD	CAediting_974614	chr13_114284283_+	.	.	6.41541123754452e-05	0.254024028027656	.	.
THCA	CAediting_974638	chr13_114287375_+	0.0207212353791142	0.280049544856653	.	.	.	.
LGG	CAediting_974767	chr13_114295018_+	.	.	0.0018027557520162	0.339561155097539	.	.

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Relation with cancer stages for UPF3A

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for UPF3A

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LGG	CAediting_974614	chr13_114284283_+	0.0154184638784286	0.0275234	0.071011
STAD	CAediting_974580	chr13_114284122_+	0.00536168119300084	0.0329528	0.185628

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RelatedDrugs for UPF3A

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for UPF3A

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene