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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TBC1D15 (CAeditome ID:64786)

Gene summary for TBC1D15

check button Gene summary
Gene informationGene symbol

TBC1D15

Gene ID

64786

Gene nameTBC1 domain family member 15
SynonymsRAB7-GAP
Cytomap

12q21.1

Type of geneprotein-coding
DescriptionTBC1 domain family member 15GAP for RAB7GTPase-activating protein RAB7Tre-2-budding uninhibited by benzimidazole-cell division cycle 16 domain, domain family member 15Tre2/Bub2/Cdc16 domain family member 15
Modification date20210522
UniProtAcc

Q8TC07

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for TBC1D15

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000121749.14
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_910237(71842553, +), CAediting_910238(71842567, +), CAediting_910239(71842576, +), CAediting_910240(71842741, +), CAediting_910241(71842751, +), CAediting_910242(71842772, +), CAediting_910243(71843098, +), CAediting_910244(71843109, +), CAediting_910245(71843160, +), CAediting_910246(71846873, +), CAediting_910247(71846900, +), CAediting_910248(71846901, +), CAediting_910249(71846902, +), CAediting_910250(71846918, +), CAediting_910251(71846922, +), CAediting_910252(71846944, +), CAediting_910253(71846995, +), CAediting_910254(71847485, +), CAediting_910255(71847505, +), CAediting_910256(71847530, +), CAediting_910257(71847536, +), CAediting_910258(71847539, +), CAediting_910259(71847543, +), CAediting_910260(71847601, +), CAediting_910261(71847623, +), CAediting_910262(71847942, +), CAediting_910263(71850482, +), CAediting_910264(71850487, +), CAediting_910265(71850513, +), CAediting_910266(71850525, +), CAediting_910267(71850530, +), CAediting_910268(71850546, +), CAediting_910269(71850552, +), CAediting_910270(71850554, +), CAediting_910271(71850558, +), CAediting_910272(71850620, +), CAediting_910273(71850734, +), CAediting_910274(71850777, +), CAediting_910275(71850780, +), CAediting_910276(71850782, +), CAediting_910277(71850788, +), CAediting_910278(71850801, +), CAediting_910279(71850872, +), CAediting_910280(71850873, +), CAediting_910281(71850876, +), CAediting_910282(71850889, +), CAediting_910283(71850893, +), CAediting_910284(71850908, +), CAediting_910285(71850919, +), CAediting_910286(71855480, +), CAediting_910287(71855547, +), CAediting_910288(71859677, +), CAediting_910289(71859701, +), CAediting_910290(71859707, +), CAediting_910291(71859737, +), CAediting_910292(71859747, +), CAediting_910293(71863123, +), CAediting_910294(71863221, +), CAediting_910295(71863257, +), CAediting_910296(71863271, +), CAediting_910297(71881669, +), CAediting_910298(71881730, +), CAediting_910299(71881731, +), CAediting_910300(71881755, +), CAediting_910301(71881759, +), CAediting_910302(71881762, +), CAediting_910303(71881796, +), CAediting_910304(71881815, +), CAediting_910305(71881830, +), CAediting_910306(71886281, +), CAediting_910307(71886438, +), CAediting_910308(71886573, +), CAediting_910309(71888228, +), CAediting_910310(71888308, +), CAediting_910311(71888345, +), CAediting_910312(71888346, +), CAediting_910313(71901122, +), CAediting_910314(71901260, +), CAediting_910315(71908050, +), CAediting_910316(71917912, +), CAediting_910317(71919228, +), CAediting_910318(71919278, +), CAediting_910319(71924379, +), CAediting_910320(71924411, +), CAediting_910321(71924419, +), CAediting_910322(71924430, +), CAediting_910323(71924435, +), CAediting_910324(71924455, +), CAediting_910325(71924456, +), CAediting_910326(71924460, +), CAediting_910327(71924473, +), CAediting_910328(71924485, +), CAediting_910329(71924495, +), CAediting_910330(71924497, +), CAediting_910331(71924518, +), CAediting_910332(71924521, +), CAediting_910333(71924522, +), CAediting_910334(71924530, +), CAediting_910335(71924539, +), CAediting_910336(71924565, +), CAediting_910337(71924608, +), CAediting_910338(71924618, +), CAediting_910339(71924625, +), CAediting_910340(71924630, +), CAediting_910341(71924639, +), CAediting_910342(71924760, +), CAediting_910343(71924761, +), CAediting_910344(71924838, +), CAediting_910345(71924858, +), CAediting_910346(71924868, +), CAediting_910347(71924935, +), CAediting_910348(71924936, +), CAediting_910349(71924975, +), CAediting_910350(71924997, +), CAediting_910351(71924999, +), CAediting_910352(71926008, +), CAediting_910353(71926058, +), CAediting_910354(71926061, +),

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RNA editing positional annotations for TBC1D15 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_910237chr12_71842553_+ncRNA_intronic
CAediting_910238chr12_71842567_+ncRNA_intronic
CAediting_910239chr12_71842576_+ncRNA_intronic
CAediting_910240chr12_71842741_+ncRNA_intronic
CAediting_910241chr12_71842751_+ncRNA_intronic
CAediting_910242chr12_71842772_+ncRNA_intronic
CAediting_910243chr12_71843098_+ncRNA_intronic
CAediting_910244chr12_71843109_+ncRNA_intronic
CAediting_910245chr12_71843160_+ncRNA_intronic
CAediting_910246chr12_71846873_+ncRNA_intronic
CAediting_910247chr12_71846900_+ncRNA_intronic
CAediting_910248chr12_71846901_+ncRNA_intronic
CAediting_910249chr12_71846902_+ncRNA_intronic
CAediting_910250chr12_71846918_+ncRNA_intronic
CAediting_910251chr12_71846922_+ncRNA_intronic
CAediting_910252chr12_71846944_+ncRNA_intronic
CAediting_910253chr12_71846995_+ncRNA_intronic
CAediting_910254chr12_71847485_+ncRNA_intronic
CAediting_910255chr12_71847505_+ncRNA_intronic
CAediting_910256chr12_71847530_+ncRNA_intronic
CAediting_910257chr12_71847536_+ncRNA_intronic
CAediting_910258chr12_71847539_+ncRNA_intronic
CAediting_910259chr12_71847543_+ncRNA_intronic
CAediting_910260chr12_71847601_+ncRNA_intronic
CAediting_910261chr12_71847623_+ncRNA_intronic
CAediting_910262chr12_71847942_+ncRNA_intronic
CAediting_910263chr12_71850482_+ncRNA_intronic
CAediting_910264chr12_71850487_+ncRNA_intronic
CAediting_910265chr12_71850513_+ncRNA_intronic
CAediting_910266chr12_71850525_+ncRNA_intronic
CAediting_910267chr12_71850530_+ncRNA_intronic
CAediting_910268chr12_71850546_+ncRNA_intronic
CAediting_910269chr12_71850552_+ncRNA_intronic
CAediting_910270chr12_71850554_+ncRNA_intronic
CAediting_910271chr12_71850558_+ncRNA_intronic
CAediting_910272chr12_71850620_+ncRNA_intronic
CAediting_910273chr12_71850734_+ncRNA_intronic
CAediting_910274chr12_71850777_+ncRNA_intronic
CAediting_910275chr12_71850780_+ncRNA_intronic
CAediting_910276chr12_71850782_+ncRNA_intronic
CAediting_910277chr12_71850788_+ncRNA_intronic
CAediting_910278chr12_71850801_+ncRNA_intronic
CAediting_910279chr12_71850872_+ncRNA_intronic
CAediting_910280chr12_71850873_+ncRNA_intronic
CAediting_910281chr12_71850876_+ncRNA_intronic
CAediting_910282chr12_71850889_+ncRNA_intronic
CAediting_910283chr12_71850893_+ncRNA_intronic
CAediting_910284chr12_71850908_+ncRNA_intronic
CAediting_910285chr12_71850919_+ncRNA_intronic
CAediting_910286chr12_71855480_+ncRNA_intronic
CAediting_910287chr12_71855547_+ncRNA_intronic
CAediting_910288chr12_71859677_+ncRNA_intronic
CAediting_910289chr12_71859701_+ncRNA_intronic
CAediting_910290chr12_71859707_+ncRNA_intronic
CAediting_910291chr12_71859737_+ncRNA_intronic
CAediting_910292chr12_71859747_+ncRNA_intronic
CAediting_910293chr12_71863123_+ncRNA_intronic
CAediting_910294chr12_71863221_+ncRNA_intronic
CAediting_910295chr12_71863257_+ncRNA_intronic
CAediting_910296chr12_71863271_+ncRNA_intronic
CAediting_910297chr12_71881669_+ncRNA_intronic
CAediting_910298chr12_71881730_+ncRNA_intronic
CAediting_910299chr12_71881731_+ncRNA_intronic
CAediting_910300chr12_71881755_+ncRNA_intronic
CAediting_910301chr12_71881759_+ncRNA_intronic
CAediting_910302chr12_71881762_+ncRNA_intronic
CAediting_910303chr12_71881796_+ncRNA_intronic
CAediting_910304chr12_71881815_+ncRNA_intronic
CAediting_910305chr12_71881830_+ncRNA_intronic
CAediting_910306chr12_71886281_+ncRNA_intronic
CAediting_910307chr12_71886438_+ncRNA_intronic
CAediting_910308chr12_71886573_+ncRNA_intronic
CAediting_910309chr12_71888228_+ncRNA_intronic
CAediting_910310chr12_71888308_+ncRNA_intronic
CAediting_910311chr12_71888345_+ncRNA_intronic
CAediting_910312chr12_71888346_+ncRNA_intronic
CAediting_910313chr12_71901122_+ncRNA_intronic
CAediting_910314chr12_71901260_+ncRNA_intronic
CAediting_910315chr12_71908050_+ncRNA_intronic
CAediting_910316chr12_71917912_+ncRNA_intronic
CAediting_910317chr12_71919228_+ncRNA_intronic
CAediting_910318chr12_71919278_+ncRNA_intronic
CAediting_910319chr12_71924379_+UTR3
CAediting_910320chr12_71924411_+UTR3
CAediting_910321chr12_71924419_+UTR3
CAediting_910322chr12_71924430_+UTR3
CAediting_910323chr12_71924435_+UTR3
CAediting_910324chr12_71924455_+UTR3
CAediting_910325chr12_71924456_+UTR3
CAediting_910326chr12_71924460_+UTR3
CAediting_910327chr12_71924473_+UTR3
CAediting_910328chr12_71924485_+UTR3
CAediting_910329chr12_71924495_+UTR3
CAediting_910330chr12_71924497_+UTR3
CAediting_910331chr12_71924518_+UTR3
CAediting_910332chr12_71924521_+UTR3
CAediting_910333chr12_71924522_+UTR3
CAediting_910334chr12_71924530_+UTR3
CAediting_910335chr12_71924539_+UTR3
CAediting_910336chr12_71924565_+UTR3
CAediting_910337chr12_71924608_+UTR3
CAediting_910338chr12_71924618_+UTR3
CAediting_910339chr12_71924625_+UTR3
CAediting_910340chr12_71924630_+UTR3
CAediting_910341chr12_71924639_+UTR3
CAediting_910342chr12_71924760_+UTR3
CAediting_910343chr12_71924761_+UTR3
CAediting_910344chr12_71924838_+UTR3
CAediting_910345chr12_71924858_+UTR3
CAediting_910346chr12_71924868_+UTR3
CAediting_910347chr12_71924935_+UTR3
CAediting_910348chr12_71924936_+UTR3
CAediting_910349chr12_71924975_+UTR3
CAediting_910350chr12_71924997_+UTR3
CAediting_910351chr12_71924999_+UTR3
CAediting_910352chr12_71926008_+UTR3
CAediting_910353chr12_71926058_+UTR3
CAediting_910354chr12_71926061_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_910237chr12_71842553_+SINEAluAluJo
CAediting_910238chr12_71842567_+SINEAluAluJo
CAediting_910239chr12_71842576_+SINEAluAluJo
CAediting_910240chr12_71842741_+SINEAluAluJo
CAediting_910241chr12_71842751_+SINEAluAluJo
CAediting_910242chr12_71842772_+SINEAluAluJo
CAediting_910243chr12_71843098_+SINEAluAluSz
CAediting_910244chr12_71843109_+SINEAluAluSz
CAediting_910245chr12_71843160_+SINEAluAluSz
CAediting_910246chr12_71846873_+SINEAluAluJb
CAediting_910247chr12_71846900_+SINEAluAluJb
CAediting_910248chr12_71846901_+SINEAluAluJb
CAediting_910249chr12_71846902_+SINEAluAluJb
CAediting_910250chr12_71846918_+SINEAluAluJb
CAediting_910251chr12_71846922_+SINEAluAluJb
CAediting_910252chr12_71846944_+SINEAluAluJb
CAediting_910253chr12_71846995_+SINEAluAluJb
CAediting_910254chr12_71847485_+SINEAluAluSg
CAediting_910255chr12_71847505_+SINEAluAluSg
CAediting_910256chr12_71847530_+SINEAluAluSg
CAediting_910257chr12_71847536_+SINEAluAluSg
CAediting_910258chr12_71847539_+SINEAluAluSg
CAediting_910259chr12_71847543_+SINEAluAluSg
CAediting_910260chr12_71847601_+SINEAluAluSg
CAediting_910261chr12_71847623_+SINEAluAluSg
CAediting_910262chr12_71847942_+SINEAluAluSp
CAediting_910263chr12_71850482_+SINEAluAluJr
CAediting_910264chr12_71850487_+SINEAluAluJr
CAediting_910265chr12_71850513_+SINEAluAluJr
CAediting_910266chr12_71850525_+SINEAluAluJr
CAediting_910267chr12_71850530_+SINEAluAluJr
CAediting_910268chr12_71850546_+SINEAluAluJr
CAediting_910269chr12_71850552_+SINEAluAluJr
CAediting_910270chr12_71850554_+SINEAluAluJr
CAediting_910271chr12_71850558_+SINEAluAluJr
CAediting_910272chr12_71850620_+SINEAluAluJr
CAediting_910273chr12_71850734_+SINEAluAluSc
CAediting_910274chr12_71850777_+SINEAluAluSc
CAediting_910275chr12_71850780_+SINEAluAluSc
CAediting_910276chr12_71850782_+SINEAluAluSc
CAediting_910277chr12_71850788_+SINEAluAluSc
CAediting_910278chr12_71850801_+SINEAluAluSc
CAediting_910279chr12_71850872_+SINEAluAluSc
CAediting_910280chr12_71850873_+SINEAluAluSc
CAediting_910281chr12_71850876_+SINEAluAluSc
CAediting_910282chr12_71850889_+SINEAluAluSc
CAediting_910283chr12_71850893_+SINEAluAluSc
CAediting_910284chr12_71850908_+SINEAluAluSc
CAediting_910285chr12_71850919_+SINEAluAluSc
CAediting_910286chr12_71855480_+SINEAluAluY
CAediting_910287chr12_71855547_+SINEAluAluY
CAediting_910288chr12_71859677_+SINEAluAluSx1
CAediting_910289chr12_71859701_+SINEAluAluSx1
CAediting_910290chr12_71859707_+SINEAluAluSx1
CAediting_910291chr12_71859737_+SINEAluAluSx1
CAediting_910292chr12_71859747_+SINEAluAluSx1
CAediting_910293chr12_71863123_+SINEAluAluY
CAediting_910294chr12_71863221_+SINEAluAluY
CAediting_910295chr12_71863257_+SINEAluAluY
CAediting_910296chr12_71863271_+SINEAluAluY
CAediting_910297chr12_71881669_+SINEAluAluSc
CAediting_910298chr12_71881730_+SINEAluAluSc
CAediting_910299chr12_71881731_+SINEAluAluSc
CAediting_910300chr12_71881755_+SINEAluAluSc
CAediting_910301chr12_71881759_+SINEAluAluSc
CAediting_910302chr12_71881762_+SINEAluAluSc
CAediting_910303chr12_71881796_+SINEAluAluSc
CAediting_910304chr12_71881815_+SINEAluAluSc
CAediting_910305chr12_71881830_+SINEAluAluSc
CAediting_910306chr12_71886281_+SINEAluAluSx
CAediting_910307chr12_71886438_+SINEAluAluSx
CAediting_910309chr12_71888228_+SINEAluAluSz
CAediting_910310chr12_71888308_+SINEAluAluSz
CAediting_910311chr12_71888345_+SINEAluAluSz
CAediting_910312chr12_71888346_+SINEAluAluSz
CAediting_910313chr12_71901122_+SINEAluAluJr
CAediting_910314chr12_71901260_+SINEAluAluJr
CAediting_910315chr12_71908050_+SINEAluAluSx
CAediting_910316chr12_71917912_+SINEAluAluJb
CAediting_910317chr12_71919228_+SINEAluFLAM_A
CAediting_910318chr12_71919278_+SINEAluFLAM_A
CAediting_910319chr12_71924379_+SINEAluAluSz
CAediting_910320chr12_71924411_+SINEAluAluSz
CAediting_910321chr12_71924419_+SINEAluAluSz
CAediting_910322chr12_71924430_+SINEAluAluSz
CAediting_910323chr12_71924435_+SINEAluAluSz
CAediting_910324chr12_71924455_+SINEAluAluSz
CAediting_910325chr12_71924456_+SINEAluAluSz
CAediting_910326chr12_71924460_+SINEAluAluSz
CAediting_910327chr12_71924473_+SINEAluAluSz
CAediting_910328chr12_71924485_+SINEAluAluSz
CAediting_910329chr12_71924495_+SINEAluAluSz
CAediting_910330chr12_71924497_+SINEAluAluSz
CAediting_910331chr12_71924518_+SINEAluAluSz
CAediting_910332chr12_71924521_+SINEAluAluSz
CAediting_910333chr12_71924522_+SINEAluAluSz
CAediting_910334chr12_71924530_+SINEAluAluSz
CAediting_910335chr12_71924539_+SINEAluAluSz
CAediting_910336chr12_71924565_+SINEAluAluSz
CAediting_910337chr12_71924608_+SINEAluAluSz
CAediting_910338chr12_71924618_+SINEAluAluSz
CAediting_910339chr12_71924625_+SINEAluAluSz
CAediting_910340chr12_71924630_+SINEAluAluSz
CAediting_910341chr12_71924639_+SINEAluAluSz
CAediting_910342chr12_71924760_+SINEAluAluYa5
CAediting_910343chr12_71924761_+SINEAluAluYa5
CAediting_910344chr12_71924838_+SINEAluAluYa5
CAediting_910345chr12_71924858_+SINEAluAluYa5
CAediting_910346chr12_71924868_+SINEAluAluYa5
CAediting_910347chr12_71924935_+SINEAluAluYa5
CAediting_910348chr12_71924936_+SINEAluAluYa5
CAediting_910349chr12_71924975_+SINEAluAluYa5
CAediting_910350chr12_71924997_+SINEAluAluYa5
CAediting_910351chr12_71924999_+SINEAluAluYa5
CAediting_910352chr12_71926008_+DNATcMar-TiggerMER47A
CAediting_910353chr12_71926058_+DNATcMar-TiggerMER47A
CAediting_910354chr12_71926061_+DNATcMar-TiggerMER47A

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RNA A-to-I editing events in the alternative splicing sites for TBC1D15

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000121749.14.TBC1D15.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000121749.14.TBC1D15.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TBC1D15

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
KIRC.CAediting_910334.ENSG00000121749.TBC1D15.png
Soverview

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Protein coding region RNA A-to-I editings for TBC1D15

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TBC1D15

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_910328chr12_71924485_+ENSG00000121749.14ENST00000550746hsa-miR-6743-3p71924480719244867mer-m87192446571924487140.00-18.62
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548ae-3p71924520719245267mer-m87192450771924527141.00-9.01
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548ae-3p71924520719245267mer-m87192450771924527141.00-9.01
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548ah-3p71924520719245267mer-m87192450871924527148.00-12.51
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548aj-3p71924520719245267mer-m87192450771924527141.00-6.90
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548aj-3p71924520719245267mer-m87192450771924527141.00-6.90
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548am-3p71924520719245267mer-m87192450871924527148.00-11.65
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548aq-3p71924520719245267mer-m87192450671924527141.00-9.39
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548j-3p71924520719245267mer-m87192450771924527141.00-9.54
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548x-3p71924520719245267mer-m87192450871924527141.00-6.77
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-548x-3p71924520719245267mer-m87192450871924527141.00-6.77
CAediting_910333chr12_71924522_+ENSG00000121749.14ENST00000550746hsa-miR-7844-5p71924518719245247mer-m87192450471924525156.00-20.79
CAediting_910319chr12_71924379_+ENSG00000121749.14ENST00000550746hsa-miR-320a-5p71924373719243808mer-1a7192435971924380140.00-11.88
CAediting_910319chr12_71924379_+ENSG00000121749.14ENST00000550746hsa-miR-6868-3p71924374719243807mer-m87192436171924381140.00-11.71
CAediting_910325chr12_71924456_+ENSG00000121749.14ENST00000550746hsa-miR-607871924452719244598mer-1a7192444071924459148.00-20.48
CAediting_910326chr12_71924460_+ENSG00000121749.14ENST00000550746hsa-miR-589-5p71924458719244647mer-m87192444471924465152.00-17.74
CAediting_910329chr12_71924495_+ENSG00000121749.14ENST00000550746hsa-miR-17-3p71924491719244977mer-m87192447671924498146.00-20.61
CAediting_910336chr12_71924565_+ENSG00000121749.14ENST00000550746hsa-miR-3940-3p71924562719245687mer-m87192455171924569144.00-24.53
CAediting_910338chr12_71924618_+ENSG00000121749.14ENST00000550746hsa-miR-3189-3p71924612719246187mer-m87192459671924619153.00-22.29
CAediting_910338chr12_71924618_+ENSG00000121749.14ENST00000550746hsa-miR-6813-3p71924613719246197mer-m87192460071924620140.00-10.70
CAediting_910339chr12_71924625_+ENSG00000121749.14ENST00000550746hsa-miR-797771924620719246267mer-m87192461071924627140.00-13.07
CAediting_910340chr12_71924630_+ENSG00000121749.14ENST00000550746hsa-miR-106a-3p71924626719246316mer7192461171924632145.00-21.13
CAediting_910341chr12_71924639_+ENSG00000121749.14ENST00000550746hsa-miR-663b71924637719246437mer-m87192462371924644147.00-24.05
CAediting_910342chr12_71924760_+ENSG00000121749.14ENST00000550746hsa-miR-513a-5p71924754719247607mer-m87192474471924761144.00-16.68
CAediting_910342chr12_71924760_+ENSG00000121749.14ENST00000550746hsa-miR-513a-5p71924754719247607mer-m87192474471924761144.00-16.68
CAediting_910342chr12_71924760_+ENSG00000121749.14ENST00000550746hsa-miR-63871924759719247657mer-1a7192474171924765159.00-35.56
CAediting_910343chr12_71924761_+ENSG00000121749.14ENST00000550746hsa-miR-805271924759719247657mer-1a7192474771924765140.00-24.15
CAediting_910344chr12_71924838_+ENSG00000121749.14ENST00000550746hsa-miR-412-3p71924831719248377mer-m87192482071924838143.00-20.96
CAediting_910344chr12_71924838_+ENSG00000121749.14ENST00000550746hsa-miR-450871924836719248427mer-m87192482871924843141.00-24.29
CAediting_910344chr12_71924838_+ENSG00000121749.14ENST00000550746hsa-miR-6754-3p71924831719248377mer-m87192481871924838146.00-15.11
CAediting_910345chr12_71924858_+ENSG00000121749.14ENST00000550746hsa-miR-153-5p71924851719248577mer-m87192483671924858144.00-8.17
CAediting_910345chr12_71924858_+ENSG00000121749.14ENST00000550746hsa-miR-3680-3p71924855719248628mer-1a7192484071924862140.00-14.25
CAediting_910345chr12_71924858_+ENSG00000121749.14ENST00000550746hsa-miR-3680-3p71924855719248628mer-1a7192484071924862140.00-14.25
CAediting_910348chr12_71924936_+ENSG00000121749.14ENST00000550746hsa-miR-428471924931719249377mer-m87192492171924938148.00-20.34
CAediting_910348chr12_71924936_+ENSG00000121749.14ENST00000550746hsa-miR-443771924932719249387mer-m87192491971924939145.00-18.43
CAediting_910350chr12_71924997_+ENSG00000121749.14ENST00000550746hsa-miR-118171924990719249967mer-m87192497771924997142.00-22.01
CAediting_910351chr12_71924999_+ENSG00000121749.14ENST00000550746hsa-miR-339-5p71924993719249997mer-m87192497871925000163.00-27.29
CAediting_910354chr12_71926061_+ENSG00000121749.14ENST00000550746hsa-miR-26a-1-3p71926059719260657mer-m87192604471926066149.00-13.31
CAediting_910354chr12_71926061_+ENSG00000121749.14ENST00000550746hsa-miR-26a-2-3p71926059719260657mer-m87192604471926066163.00-14.99
CAediting_910331chr12_71924518_+ENSG00000121749.14ENST00000550746hsa-miR-4755-3p71924512719245187mer-m87192449971924519154.00-21.55
CAediting_910349chr12_71924975_+ENSG00000121749.14ENST00000550746hsa-miR-396071924969719249757mer-m87192495871924976143.00-25.89
CAediting_910349chr12_71924975_+ENSG00000121749.14ENST00000550746hsa-miR-807271924969719249757mer-m87192495871924976152.00-27.41
CAediting_910353chr12_71926058_+ENSG00000121749.14ENST00000550746hsa-miR-95-5p71926051719260577mer-m87192604171926058154.00-10.50

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_910342chr12_71924760_+ENSG00000121749.14ENST00000550746hsa-miR-10399-5p71924755719247617mer-m87192474171924762144-11.2
CAediting_910343chr12_71924761_+ENSG00000121749.14ENST00000550746hsa-miR-10399-5p71924755719247617mer-m87192474171924762144-11.2
CAediting_910321chr12_71924419_+ENSG00000121749.14ENST00000550746hsa-miR-1288-3p71924416719244227mer-m87192440571924423148-19.81
CAediting_910319chr12_71924379_+ENSG00000121749.14ENST00000550746hsa-miR-130b-5p71924375719243817mer-m87192436271924382142-10.8
CAediting_910323chr12_71924435_+ENSG00000121749.14ENST00000550746hsa-miR-17-3p71924429719244357mer-m87192441371924436154-22.37
CAediting_910321chr12_71924419_+ENSG00000121749.14ENST00000550746hsa-miR-191-3p71924414719244196mer7192439771924420143-23.96
CAediting_910344chr12_71924838_+ENSG00000121749.14ENST00000550746hsa-miR-193b-5p71924835719248417mer-m87192482171924842142-17.8
CAediting_910329chr12_71924495_+ENSG00000121749.14ENST00000550746hsa-miR-20b-3p71924491719244977mer-m87192447771924498151-16.84
CAediting_910330chr12_71924497_+ENSG00000121749.14ENST00000550746hsa-miR-20b-3p71924491719244977mer-m87192447771924498151-16.84
CAediting_910339chr12_71924625_+ENSG00000121749.14ENST00000550746hsa-miR-216a-5p71924622719246298mer-1a7192460871924629150-16.7
CAediting_910322chr12_71924430_+ENSG00000121749.14ENST00000550746hsa-miR-317471924426719244316mer7192441071924432145-23.46
CAediting_910336chr12_71924565_+ENSG00000121749.14ENST00000550746hsa-miR-3190-5p71924559719245657mer-m87192454771924566147-18.34
CAediting_910320chr12_71924411_+ENSG00000121749.14ENST00000550746hsa-miR-324-3p71924408719244147mer-m87192439371924415148-24.15
CAediting_910352chr12_71926008_+ENSG00000121749.14ENST00000550746hsa-miR-360971926005719260117mer-m87192598971926012149-16.25
CAediting_910335chr12_71924539_+ENSG00000121749.14ENST00000550746hsa-miR-3675-3p71924537719245437mer-m87192452371924544141-12.8
CAediting_910353chr12_71926058_+ENSG00000121749.14ENST00000550746hsa-miR-374a-5p71926053719260608mer-1a7192604171926060152-8.4
CAediting_910353chr12_71926058_+ENSG00000121749.14ENST00000550746hsa-miR-374b-5p71926053719260608mer-1a7192604171926060152-6.57
CAediting_910327chr12_71924473_+ENSG00000121749.14ENST00000550746hsa-miR-392971924470719244767mer-m87192445671924477152-18.17
CAediting_910320chr12_71924411_+ENSG00000121749.14ENST00000550746hsa-miR-425271924409719244157mer-m87192439671924416149-21.82
CAediting_910341chr12_71924639_+ENSG00000121749.14ENST00000550746hsa-miR-428471924635719246428mer-1a7192462571924642151-19.56
CAediting_910327chr12_71924473_+ENSG00000121749.14ENST00000550746hsa-miR-432971924467719244737mer-m87192445671924474141-10.73
CAediting_910327chr12_71924473_+ENSG00000121749.14ENST00000550746hsa-miR-447871924470719244767mer-m87192446271924477149-25.11
CAediting_910337chr12_71924608_+ENSG00000121749.14ENST00000550746hsa-miR-447871924605719246117mer-m87192459671924612154-23.51
CAediting_910329chr12_71924495_+ENSG00000121749.14ENST00000550746hsa-miR-454071924489719244946mer7192447471924495140-15.68
CAediting_910346chr12_71924868_+ENSG00000121749.14ENST00000550746hsa-miR-4735-5p71924862719248687mer-m87192484871924869140-4.28
CAediting_910320chr12_71924411_+ENSG00000121749.14ENST00000550746hsa-miR-4793-3p71924405719244117mer-m87192439071924412149-19.36
CAediting_910323chr12_71924435_+ENSG00000121749.14ENST00000550746hsa-miR-485-5p71924433719244397mer-m87192442071924440153-17.86
CAediting_910337chr12_71924608_+ENSG00000121749.14ENST00000550746hsa-miR-485-5p71924606719246127mer-m87192459271924613153-18.78
CAediting_910343chr12_71924761_+ENSG00000121749.14ENST00000550746hsa-miR-5089-5p71924759719247657mer-m87192474471924766148-14.13
CAediting_910352chr12_71926008_+ENSG00000121749.14ENST00000550746hsa-miR-548ah-5p71926005719260117mer-m87192598971926012144-13.57
CAediting_910352chr12_71926008_+ENSG00000121749.14ENST00000550746hsa-miR-548az-5p71926006719260138mer-1a7192599171926013154-14.73
CAediting_910336chr12_71924565_+ENSG00000121749.14ENST00000550746hsa-miR-548s71924558719245647mer-m87192454471924565143-12.53
CAediting_910352chr12_71926008_+ENSG00000121749.14ENST00000550746hsa-miR-548t-5p71926006719260138mer-1a7192599271926013154-14.03
CAediting_910349chr12_71924975_+ENSG00000121749.14ENST00000550746hsa-miR-569371924971719249777mer-m87192495771924978140-17.39
CAediting_910323chr12_71924435_+ENSG00000121749.14ENST00000550746hsa-miR-60471924432719244376mer7192441971924438140-27.72
CAediting_910342chr12_71924760_+ENSG00000121749.14ENST00000550746hsa-miR-6504-3p71924755719247617mer-m87192474171924762148-14.35
CAediting_910343chr12_71924761_+ENSG00000121749.14ENST00000550746hsa-miR-6504-3p71924755719247617mer-m87192474171924762148-14.35
CAediting_910322chr12_71924430_+ENSG00000121749.14ENST00000550746hsa-miR-6807-5p71924423719244297mer-m87192441171924430149-21.04
CAediting_910323chr12_71924435_+ENSG00000121749.14ENST00000550746hsa-miR-6884-5p71924433719244397mer-m87192441871924440146-20.16
CAediting_910337chr12_71924608_+ENSG00000121749.14ENST00000550746hsa-miR-6884-5p71924606719246127mer-m87192459071924613152-20.8
CAediting_910342chr12_71924760_+ENSG00000121749.14ENST00000550746hsa-miR-7151-3p71924753719247608mer-1a7192474071924760144-16.51

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000121749.14ENST00000550746hsa-miR-624-3p71923991719239988mer-1a7192397971923998148-12.03
CAediting_688080chr9_63819626_+ENSG00000121749.14ENST00000550746hsa-miR-4477b71926733719267408mer-1a7192671971926740144-9.05
CAediting_1229415chr17_67471547_+ENSG00000121749.14ENST00000550746hsa-miR-548aa71925946719259538mer-1a7192592971925953160-8.85
CAediting_228905chr2_188297554_+ENSG00000121749.14ENST00000550746hsa-miR-561-3p71924576719245816mer7192455971924582145-16.26
CAediting_396018chr5_1062918_-ENSG00000121749.14ENST00000550746hsa-miR-463571924585719245917mer-m87192457271924592158-21.35
CAediting_604450chr7_133034877_-ENSG00000121749.14ENST00000550746hsa-miR-365471925411719254166mer7192539971925417140-24.72
CAediting_524911chr7_5495852_-ENSG00000121749.14ENST00000550746hsa-miR-589-3p71924385719243917mer-m87192437071924392152-15.39
CAediting_524911chr7_5495852_-ENSG00000121749.14ENST00000550746hsa-miR-589-3p71925799719258057mer-m87192578371925806140-13.73
CAediting_1054808chr15_66496985_-ENSG00000121749.14ENST00000498482hsa-miR-451271880496718805038mer-1a7188048271880503152-16.38
CAediting_1160181chr17_7017644_-ENSG00000121749.14ENST00000462788hsa-miR-195-3p71896012718960198mer-1a7189599771896019143-9.96
CAediting_1229415chr17_67471547_+ENSG00000121749.14ENST00000462788hsa-miR-548aa71918488719184947mer-m87191847171918495145-13.03

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846604chr11_93733708_-ENSG00000121749.14ENST00000550746hsa-miR-1304-3p71926420719264256mer7192640471926426141-17.22
CAediting_1160181chr17_7017644_-ENSG00000121749.14ENST00000550746hsa-miR-195-3p71925828719258347mer-m87192581471925835146-6.91
CAediting_1160181chr17_7017644_-ENSG00000121749.14ENST00000550746hsa-miR-195-3p71923476719234827mer-m87192346271923483140-7.63
CAediting_393chr1_1167164_+ENSG00000121749.14ENST00000550746hsa-miR-200b-3p71923419719234257mer-m87192340871923426148-13.34
CAediting_604450chr7_133034877_-ENSG00000121749.14ENST00000550746hsa-miR-365471925701719257077mer-m87192569271925708146-20.47
CAediting_228905chr2_188297554_+ENSG00000121749.14ENST00000550746hsa-miR-561-3p71925924719259307mer-m87192590971925931143-5.27
CAediting_524911chr7_5495852_-ENSG00000121749.14ENST00000550746hsa-miR-589-3p71926108719261158mer-1a7192609171926115149-13.96
CAediting_1351755chr19_40282625_-ENSG00000121749.14ENST00000550746hsa-miR-64171926187719261937mer-m87192617471926194143-10.6
CAediting_1351755chr19_40282625_-ENSG00000121749.14ENST00000550746hsa-miR-64171926837719268437mer-m87192682171926844140-8.71

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TBC1D15

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TBC1D15

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_910333chr12_71924522_+7.14644831708827e-050.489733721509369....
BRCACAediting_910334chr12_71924530_+0.001749652486728690.38659749250572....

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Relation with cancer stages for TBC1D15

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for TBC1D15

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for TBC1D15

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TBC1D15

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource