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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

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Relation with survival state

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Related drugs with this gene

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Related diseases with this gene

Editing gene: LINC01184 (CAeditome ID:644873)

Gene summary for LINC01184

check button Gene summary
Gene informationGene symbol

LINC01184

Gene ID

644873

Gene namelong intergenic non-protein coding RNA 1184
Synonyms-
Cytomap

5q23.3

Type of genencRNA
Description-
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for LINC01184

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000245937.6
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_425266(127952854, -), CAediting_425267(127952866, -), CAediting_425268(127956805, -), CAediting_425269(127956807, -), CAediting_425270(127956817, -), CAediting_425271(127956829, -), CAediting_425272(127956839, -), CAediting_425273(127956843, -), CAediting_425274(127956844, -), CAediting_425275(127956857, -), CAediting_425276(127956863, -), CAediting_425277(127956878, -), CAediting_425278(127956881, -), CAediting_425279(127956887, -), CAediting_425280(127956892, -), CAediting_425281(127956897, -), CAediting_425282(127956916, -), CAediting_425283(128005781, -), CAediting_425284(128005875, -), CAediting_425285(128005880, -), CAediting_425286(128005889, -), CAediting_425287(128005910, -), CAediting_425288(128005915, -), CAediting_425289(128005942, -), CAediting_425290(128005945, -), CAediting_425291(128005946, -), CAediting_425292(128005951, -), CAediting_425293(128005953, -), CAediting_425294(128005954, -), CAediting_425295(128005955, -), CAediting_425296(128005956, -), CAediting_425297(128005960, -), CAediting_425298(128005972, -), CAediting_425299(128005974, -), CAediting_425300(128005981, -), CAediting_425301(128005991, -), CAediting_425302(128006015, -), CAediting_425303(128006033, -), CAediting_425304(128006044, -), CAediting_425305(128006057, -), CAediting_425306(128006066, -), CAediting_425307(128006073, -), CAediting_425308(128008937, -), CAediting_425309(128028602, -), CAediting_425310(128029921, -), CAediting_425311(128031479, -), CAediting_425312(128031487, -), CAediting_425313(128032221, -), CAediting_425314(128034515, -), CAediting_425315(128040694, -), CAediting_425316(128040888, -), CAediting_425317(128042011, -), CAediting_425318(128048735, -), CAediting_425319(128051392, -), CAediting_425320(128052579, -), CAediting_425321(128054507, -), CAediting_425322(128054529, -), CAediting_425323(128054653, -), CAediting_425324(128054674, -), CAediting_425325(128054717, -), CAediting_425326(128055063, -), CAediting_425327(128055080, -), CAediting_425328(128055084, -), CAediting_425329(128055090, -), CAediting_425330(128055232, -), CAediting_425331(128061835, -), CAediting_425332(128067940, -), CAediting_425333(128067950, -), CAediting_425334(128068011, -), CAediting_425335(128068033, -), CAediting_425336(128068057, -), CAediting_425337(128068125, -), CAediting_425338(128071548, -), CAediting_425339(128071574, -), CAediting_425340(128071604, -), CAediting_425341(128071628, -), CAediting_425342(128071636, -), CAediting_425343(128071680, -), CAediting_425344(128071991, -), CAediting_425345(128073506, -), CAediting_425346(128073518, -), CAediting_425347(128075680, -), CAediting_425348(128075724, -), CAediting_425349(128075820, -), CAediting_425350(128076852, -), CAediting_425351(128076872, -), CAediting_425352(128076879, -), CAediting_425353(128076903, -), CAediting_425354(128076913, -), CAediting_425355(128076926, -), CAediting_425356(128076943, -), CAediting_425357(128077405, -), CAediting_425358(128077453, -), CAediting_425359(128077497, -), CAediting_425360(128077534, -), CAediting_425361(128077537, -), CAediting_425362(128077601, -), CAediting_425363(128078376, -), CAediting_425364(128078407, -), CAediting_425365(128078418, -), CAediting_425366(128078427, -), CAediting_425367(128078476, -), CAediting_425368(128078489, -), CAediting_425369(128078491, -), CAediting_425370(128078597, -), CAediting_425371(128078608, -), CAediting_425372(128079858, -), CAediting_425373(128082102, -), CAediting_425374(128082104, -), CAediting_425375(128082116, -), CAediting_425376(128082139, -), CAediting_425377(128082147, -), CAediting_425378(128082171, -), CAediting_425379(128082179, -), CAediting_425380(128082193, -), CAediting_425381(128082196, -), CAediting_425382(128082211, -), CAediting_425383(128082222, -), CAediting_425384(128082236, -), CAediting_425385(128082238, -), CAediting_425386(128082248, -), CAediting_425387(128082260, -), CAediting_425388(128082336, -),

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RNA editing positional annotations for LINC01184 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_425266chr5_127952854_-ncRNA_intronic
CAediting_425267chr5_127952866_-ncRNA_intronic
CAediting_425268chr5_127956805_-ncRNA_exonic
CAediting_425269chr5_127956807_-ncRNA_exonic
CAediting_425270chr5_127956817_-ncRNA_exonic
CAediting_425271chr5_127956829_-ncRNA_exonic
CAediting_425272chr5_127956839_-ncRNA_exonic
CAediting_425273chr5_127956843_-ncRNA_exonic
CAediting_425274chr5_127956844_-ncRNA_exonic
CAediting_425275chr5_127956857_-ncRNA_exonic
CAediting_425276chr5_127956863_-ncRNA_exonic
CAediting_425277chr5_127956878_-ncRNA_exonic
CAediting_425278chr5_127956881_-ncRNA_exonic
CAediting_425279chr5_127956887_-ncRNA_exonic
CAediting_425280chr5_127956892_-ncRNA_exonic
CAediting_425281chr5_127956897_-ncRNA_exonic
CAediting_425282chr5_127956916_-ncRNA_exonic
CAediting_425283chr5_128005781_-ncRNA_intronic
CAediting_425284chr5_128005875_-ncRNA_intronic
CAediting_425285chr5_128005880_-ncRNA_intronic
CAediting_425286chr5_128005889_-ncRNA_intronic
CAediting_425287chr5_128005910_-ncRNA_intronic
CAediting_425288chr5_128005915_-ncRNA_intronic
CAediting_425289chr5_128005942_-ncRNA_intronic
CAediting_425290chr5_128005945_-ncRNA_intronic
CAediting_425291chr5_128005946_-ncRNA_intronic
CAediting_425292chr5_128005951_-ncRNA_intronic
CAediting_425293chr5_128005953_-ncRNA_intronic
CAediting_425294chr5_128005954_-ncRNA_intronic
CAediting_425295chr5_128005955_-ncRNA_intronic
CAediting_425296chr5_128005956_-ncRNA_intronic
CAediting_425297chr5_128005960_-ncRNA_intronic
CAediting_425298chr5_128005972_-ncRNA_intronic
CAediting_425299chr5_128005974_-ncRNA_intronic
CAediting_425300chr5_128005981_-ncRNA_intronic
CAediting_425301chr5_128005991_-ncRNA_intronic
CAediting_425302chr5_128006015_-ncRNA_intronic
CAediting_425303chr5_128006033_-ncRNA_intronic
CAediting_425304chr5_128006044_-ncRNA_intronic
CAediting_425305chr5_128006057_-ncRNA_intronic
CAediting_425306chr5_128006066_-ncRNA_intronic
CAediting_425307chr5_128006073_-ncRNA_intronic
CAediting_425308chr5_128008937_-ncRNA_intronic
CAediting_425309chr5_128028602_-ncRNA_intronic
CAediting_425310chr5_128029921_-ncRNA_intronic
CAediting_425311chr5_128031479_-ncRNA_intronic
CAediting_425312chr5_128031487_-ncRNA_intronic
CAediting_425313chr5_128032221_-ncRNA_intronic
CAediting_425314chr5_128034515_-ncRNA_intronic
CAediting_425315chr5_128040694_-ncRNA_intronic
CAediting_425316chr5_128040888_-ncRNA_intronic
CAediting_425317chr5_128042011_-ncRNA_intronic
CAediting_425318chr5_128048735_-ncRNA_intronic
CAediting_425319chr5_128051392_-ncRNA_intronic
CAediting_425320chr5_128052579_-ncRNA_intronic
CAediting_425321chr5_128054507_-ncRNA_intronic
CAediting_425322chr5_128054529_-ncRNA_intronic
CAediting_425323chr5_128054653_-ncRNA_intronic
CAediting_425324chr5_128054674_-ncRNA_intronic
CAediting_425325chr5_128054717_-ncRNA_intronic
CAediting_425326chr5_128055063_-ncRNA_intronic
CAediting_425327chr5_128055080_-ncRNA_intronic
CAediting_425328chr5_128055084_-ncRNA_intronic
CAediting_425329chr5_128055090_-ncRNA_intronic
CAediting_425330chr5_128055232_-ncRNA_intronic
CAediting_425331chr5_128061835_-ncRNA_intronic
CAediting_425332chr5_128067940_-ncRNA_intronic
CAediting_425333chr5_128067950_-ncRNA_intronic
CAediting_425334chr5_128068011_-ncRNA_intronic
CAediting_425335chr5_128068033_-ncRNA_intronic
CAediting_425336chr5_128068057_-ncRNA_intronic
CAediting_425337chr5_128068125_-ncRNA_intronic
CAediting_425338chr5_128071548_-ncRNA_intronic
CAediting_425339chr5_128071574_-ncRNA_intronic
CAediting_425340chr5_128071604_-ncRNA_intronic
CAediting_425341chr5_128071628_-ncRNA_intronic
CAediting_425342chr5_128071636_-ncRNA_intronic
CAediting_425343chr5_128071680_-ncRNA_intronic
CAediting_425344chr5_128071991_-ncRNA_intronic
CAediting_425345chr5_128073506_-ncRNA_intronic
CAediting_425346chr5_128073518_-ncRNA_intronic
CAediting_425347chr5_128075680_-ncRNA_intronic
CAediting_425348chr5_128075724_-ncRNA_intronic
CAediting_425349chr5_128075820_-ncRNA_intronic
CAediting_425350chr5_128076852_-ncRNA_intronic
CAediting_425351chr5_128076872_-ncRNA_intronic
CAediting_425352chr5_128076879_-ncRNA_intronic
CAediting_425353chr5_128076903_-ncRNA_intronic
CAediting_425354chr5_128076913_-ncRNA_intronic
CAediting_425355chr5_128076926_-ncRNA_intronic
CAediting_425356chr5_128076943_-ncRNA_intronic
CAediting_425357chr5_128077405_-ncRNA_intronic
CAediting_425358chr5_128077453_-ncRNA_intronic
CAediting_425359chr5_128077497_-ncRNA_intronic
CAediting_425360chr5_128077534_-ncRNA_intronic
CAediting_425361chr5_128077537_-ncRNA_intronic
CAediting_425362chr5_128077601_-ncRNA_intronic
CAediting_425363chr5_128078376_-ncRNA_intronic
CAediting_425364chr5_128078407_-ncRNA_intronic
CAediting_425365chr5_128078418_-ncRNA_intronic
CAediting_425366chr5_128078427_-ncRNA_intronic
CAediting_425367chr5_128078476_-ncRNA_intronic
CAediting_425368chr5_128078489_-ncRNA_intronic
CAediting_425369chr5_128078491_-ncRNA_intronic
CAediting_425370chr5_128078597_-ncRNA_intronic
CAediting_425371chr5_128078608_-ncRNA_intronic
CAediting_425372chr5_128079858_-ncRNA_intronic
CAediting_425373chr5_128082102_-ncRNA_exonic
CAediting_425374chr5_128082104_-ncRNA_exonic
CAediting_425375chr5_128082116_-ncRNA_exonic
CAediting_425376chr5_128082139_-ncRNA_exonic
CAediting_425377chr5_128082147_-ncRNA_exonic
CAediting_425378chr5_128082171_-ncRNA_exonic
CAediting_425379chr5_128082179_-ncRNA_exonic
CAediting_425380chr5_128082193_-ncRNA_exonic;splicing
CAediting_425381chr5_128082196_-ncRNA_splicing
CAediting_425382chr5_128082211_-ncRNA_intronic
CAediting_425383chr5_128082222_-ncRNA_intronic
CAediting_425384chr5_128082236_-ncRNA_intronic
CAediting_425385chr5_128082238_-ncRNA_intronic
CAediting_425386chr5_128082248_-ncRNA_intronic
CAediting_425387chr5_128082260_-ncRNA_intronic
CAediting_425388chr5_128082336_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_425266chr5_127952854_-SINEAluAluJo
CAediting_425267chr5_127952866_-SINEAluAluJo
CAediting_425268chr5_127956805_-SINEAluAluSx4
CAediting_425269chr5_127956807_-SINEAluAluSx4
CAediting_425270chr5_127956817_-SINEAluAluSx4
CAediting_425271chr5_127956829_-SINEAluAluSx4
CAediting_425272chr5_127956839_-SINEAluAluSx4
CAediting_425273chr5_127956843_-SINEAluAluSx4
CAediting_425274chr5_127956844_-SINEAluAluSx4
CAediting_425275chr5_127956857_-SINEAluAluSx4
CAediting_425276chr5_127956863_-SINEAluAluSx4
CAediting_425277chr5_127956878_-SINEAluAluSx4
CAediting_425278chr5_127956881_-SINEAluAluSx4
CAediting_425279chr5_127956887_-SINEAluAluSx4
CAediting_425280chr5_127956892_-SINEAluAluSx4
CAediting_425281chr5_127956897_-SINEAluAluSx4
CAediting_425282chr5_127956916_-SINEAluAluSx4
CAediting_425283chr5_128005781_-SINEAluAluSz6
CAediting_425284chr5_128005875_-SINEAluAluSz6
CAediting_425285chr5_128005880_-SINEAluAluSz6
CAediting_425286chr5_128005889_-SINEAluAluSz6
CAediting_425287chr5_128005910_-SINEAluAluSz6
CAediting_425288chr5_128005915_-SINEAluAluSz6
CAediting_425289chr5_128005942_-SINEAluAluSz6
CAediting_425290chr5_128005945_-SINEAluAluSz6
CAediting_425291chr5_128005946_-SINEAluAluSz6
CAediting_425292chr5_128005951_-SINEAluAluSz6
CAediting_425293chr5_128005953_-SINEAluAluSz6
CAediting_425294chr5_128005954_-SINEAluAluSz6
CAediting_425295chr5_128005955_-SINEAluAluSz6
CAediting_425296chr5_128005956_-SINEAluAluSz6
CAediting_425297chr5_128005960_-SINEAluAluSz6
CAediting_425298chr5_128005972_-SINEAluAluSz6
CAediting_425299chr5_128005974_-SINEAluAluSz6
CAediting_425300chr5_128005981_-SINEAluAluSz6
CAediting_425301chr5_128005991_-SINEAluAluSz6
CAediting_425302chr5_128006015_-SINEAluAluSz6
CAediting_425303chr5_128006033_-SINEAluAluSz6
CAediting_425304chr5_128006044_-SINEAluAluSz6
CAediting_425305chr5_128006057_-SINEAluAluSz6
CAediting_425306chr5_128006066_-SINEAluAluSz6
CAediting_425307chr5_128006073_-SINEAluAluSz6
CAediting_425308chr5_128008937_-SINEAluAluSx1
CAediting_425309chr5_128028602_-LINEL1L1PA4
CAediting_425310chr5_128029921_-LINEL1L1PA4
CAediting_425311chr5_128031479_-LINEL1L1M3
CAediting_425312chr5_128031487_-LINEL1L1M3
CAediting_425313chr5_128032221_-LINEL1L1M3
CAediting_425314chr5_128034515_-LINEL1L1PA14
CAediting_425315chr5_128040694_-SINEAluAluJb
CAediting_425316chr5_128040888_-SINEAluAluJb
CAediting_425317chr5_128042011_-SINEAluAluY
CAediting_425318chr5_128048735_-LINEL1L1PA6
CAediting_425319chr5_128051392_-LINEL1L1PA5
CAediting_425321chr5_128054507_-SINEAluAluJb
CAediting_425322chr5_128054529_-SINEAluAluJb
CAediting_425323chr5_128054653_-SINEAluAluJb
CAediting_425324chr5_128054674_-SINEAluAluJb
CAediting_425325chr5_128054717_-SINEAluAluJb
CAediting_425326chr5_128055063_-SINEAluAluY
CAediting_425327chr5_128055080_-SINEAluAluY
CAediting_425328chr5_128055084_-SINEAluAluY
CAediting_425329chr5_128055090_-SINEAluAluY
CAediting_425330chr5_128055232_-SINEAluAluY
CAediting_425331chr5_128061835_-SINEAluAluSz6
CAediting_425332chr5_128067940_-SINEAluAluSx
CAediting_425333chr5_128067950_-SINEAluAluSx
CAediting_425334chr5_128068011_-SINEAluAluSx
CAediting_425335chr5_128068033_-SINEAluAluSx
CAediting_425336chr5_128068057_-SINEAluAluSx
CAediting_425337chr5_128068125_-SINEAluAluSx
CAediting_425338chr5_128071548_-SINEAluAluSc
CAediting_425339chr5_128071574_-SINEAluAluSc
CAediting_425340chr5_128071604_-SINEAluAluSc
CAediting_425341chr5_128071628_-SINEAluAluSc
CAediting_425342chr5_128071636_-SINEAluAluSc
CAediting_425343chr5_128071680_-SINEAluAluSc
CAediting_425344chr5_128071991_-SINEAluAluJb
CAediting_425345chr5_128073506_-DNAhAT-CharlieMER1A
CAediting_425346chr5_128073518_-DNAhAT-CharlieMER1A
CAediting_425347chr5_128075680_-SINEAluAluSq
CAediting_425348chr5_128075724_-SINEAluAluSq
CAediting_425349chr5_128075820_-SINEAluAluSq
CAediting_425350chr5_128076852_-SINEAluFLAM_C
CAediting_425351chr5_128076872_-SINEAluFLAM_C
CAediting_425352chr5_128076879_-SINEAluFLAM_C
CAediting_425353chr5_128076903_-SINEAluFLAM_C
CAediting_425354chr5_128076913_-SINEAluFLAM_C
CAediting_425355chr5_128076926_-SINEAluFLAM_C
CAediting_425357chr5_128077405_-SINEAluAluJb
CAediting_425358chr5_128077453_-SINEAluAluJb
CAediting_425359chr5_128077497_-SINEAluAluJb
CAediting_425360chr5_128077534_-SINEAluAluJb
CAediting_425361chr5_128077537_-SINEAluAluJb
CAediting_425362chr5_128077601_-SINEAluAluJb
CAediting_425363chr5_128078376_-SINEAluAluSz6
CAediting_425364chr5_128078407_-SINEAluAluSz6
CAediting_425365chr5_128078418_-SINEAluAluSz6
CAediting_425366chr5_128078427_-SINEAluAluSz6
CAediting_425367chr5_128078476_-SINEAluAluSz6
CAediting_425368chr5_128078489_-SINEAluAluSz6
CAediting_425369chr5_128078491_-SINEAluAluSz6
CAediting_425370chr5_128078597_-SINEAluAluSz6
CAediting_425371chr5_128078608_-SINEAluAluSz6
CAediting_425372chr5_128079858_-SINEAluAluJo
CAediting_425373chr5_128082102_-SINEAluAluY
CAediting_425374chr5_128082104_-SINEAluAluY
CAediting_425375chr5_128082116_-SINEAluAluY
CAediting_425376chr5_128082139_-SINEAluAluY
CAediting_425377chr5_128082147_-SINEAluAluY
CAediting_425378chr5_128082171_-SINEAluAluY
CAediting_425379chr5_128082179_-SINEAluAluY
CAediting_425380chr5_128082193_-SINEAluAluY
CAediting_425381chr5_128082196_-SINEAluAluY
CAediting_425382chr5_128082211_-SINEAluAluY
CAediting_425383chr5_128082222_-SINEAluAluY
CAediting_425384chr5_128082236_-SINEAluAluY
CAediting_425385chr5_128082238_-SINEAluAluY
CAediting_425386chr5_128082248_-SINEAluAluY
CAediting_425387chr5_128082260_-SINEAluAluY
CAediting_425388chr5_128082336_-SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for LINC01184

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000245937.6.LINC01184.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000245937.6.LINC01184.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC01184

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LINC01184

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for LINC01184

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_425374chr5_128082104_-ENSG00000245937.6ENST00000501652.4hsa-miR-106a-3p1280821021280821076mer128082101128082122141-20.74
CAediting_425374chr5_128082104_-ENSG00000245937.6ENST00000508878.4hsa-miR-106a-3p1280821021280821076mer128082101128082122141-20.74
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000501652.4hsa-miR-42541280821151280821217mer-m8128082114128082136140-14.74
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000501652.4hsa-miR-619-3p1280821141280821207mer-m8128082113128082136145-13.63
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000501652.4hsa-miR-6765-3p1280821131280821197mer-m8128082112128082132144-17.52
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000501652.4hsa-miR-6804-3p1280821121280821187mer-m8128082111128082132140-11.26
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000501652.4hsa-miR-7851-3p1280821141280821196mer128082113128082135151-29.8
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000508878.4hsa-miR-42541280821151280821217mer-m8128082114128082136140-14.74
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000508878.4hsa-miR-619-3p1280821141280821207mer-m8128082113128082136145-13.63
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000508878.4hsa-miR-6765-3p1280821131280821197mer-m8128082112128082132144-17.52
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000508878.4hsa-miR-6804-3p1280821121280821187mer-m8128082111128082132140-11.26
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000508878.4hsa-miR-7851-3p1280821141280821196mer128082113128082135151-29.8
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000501652.4hsa-miR-3190-5p1280821661280821727mer-m8128082165128082183152-22.63
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000501652.4hsa-miR-548s1280821671280821737mer-m8128082166128082188149-13.99
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000508878.4hsa-miR-3190-5p1280821661280821727mer-m8128082165128082183152-22.63
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000508878.4hsa-miR-548s1280821671280821737mer-m8128082166128082188149-13.99
CAediting_425379chr5_128082179_-ENSG00000245937.6ENST00000501652.4hsa-miR-42851280821761280821816mer128082175128082737147-30.4
CAediting_425379chr5_128082179_-ENSG00000245937.6ENST00000508878.4hsa-miR-42851280821761280821816mer128082175128082194147-30.4
CAediting_425380chr5_128082193_-ENSG00000245937.6ENST00000508878.4hsa-miR-3614-5p1280821931280827397mer-m8128082192128082753149-21.13
CAediting_425380chr5_128082193_-ENSG00000245937.6ENST00000508878.4hsa-miR-4436b-5p1280821911280827377mer-m8128082190128082751140-9.76

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000508878.4hsa-miR-432-5p1280821151280821217mer-m8128082114128082137149-29.25
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000508878.4hsa-miR-47941280821661280821727mer-m8128082165128082187151-21.79
CAediting_425373chr5_128082102_-ENSG00000245937.6ENST00000508878.4hsa-miR-6514-3p1280820981280821047mer-m8128082097128082117155-17.54
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000508878.4hsa-miR-664a-5p1280821661280821727mer-m8128082165128082188141-16.08
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000501652.4hsa-miR-3064-5p1280821661280821716mer128082165128082185144-24.26
CAediting_425375chr5_128082116_-ENSG00000245937.6ENST00000501652.4hsa-miR-432-5p1280821151280821217mer-m8128082114128082137149-29.25
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000501652.4hsa-miR-47941280821661280821727mer-m8128082165128082187151-21.79
CAediting_425373chr5_128082102_-ENSG00000245937.6ENST00000501652.4hsa-miR-6514-3p1280820981280821047mer-m8128082097128082117155-17.54
CAediting_425378chr5_128082171_-ENSG00000245937.6ENST00000501652.4hsa-miR-664a-5p1280821661280821727mer-m8128082165128082188141-16.08

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1054808chr15_66496985_-ENSG00000245937.6ENST00000508353.4hsa-miR-45121279668431279668508mer-1a127966843127966868151-29.43
CAediting_396018chr5_1062918_-ENSG00000245937.6ENST00000508353.4hsa-miR-46351279668351279668417mer-m8127966834127966854140-12.45
CAediting_1054808chr15_66496985_-ENSG00000245937.6ENST00000514573.4hsa-miR-45121279668431279668508mer-1a127966843127966868151-29.43
CAediting_1229413chr17_67471544_+ENSG00000245937.6ENST00000514573.4hsa-miR-548aa1280623761280623827mer-m8128062375128062396150-11.94
CAediting_396018chr5_1062918_-ENSG00000245937.6ENST00000514573.4hsa-miR-46351279668351279668417mer-m8127966834127966854140-12.45
CAediting_1054808chr15_66496985_-ENSG00000245937.6ENST00000501173.5hsa-miR-45121279668431279668508mer-1a127966843127966868151-29.43
CAediting_1229413chr17_67471544_+ENSG00000245937.6ENST00000501173.5hsa-miR-548aa1280623761280623827mer-m8128062375128062396150-11.94
CAediting_396018chr5_1062918_-ENSG00000245937.6ENST00000501173.5hsa-miR-46351279668351279668417mer-m8127966834127966854140-12.45
CAediting_604450chr7_133034877_-ENSG00000245937.6ENST00000501173.5hsa-miR-36541279665821279665887mer-m8127966581127966599140-21.04
CAediting_524911chr7_5495852_-ENSG00000245937.6ENST00000501173.5hsa-miR-589-3p1280829431280829497mer-m8128082942128082964160-20.81
CAediting_396018chr5_1062918_-ENSG00000245937.6ENST00000606855.1hsa-miR-46351280026911280026977mer-m8128002690128002710151-22.26
CAediting_442554chr5_154685830_+ENSG00000245937.6ENST00000508878.4hsa-miR-13031280821161280821227mer-m8128082115128082136150-20.37
CAediting_1054808chr15_66496985_-ENSG00000245937.6ENST00000501652.4hsa-miR-45121279668431279668508mer-1a127966843127966868151-29.43
CAediting_1368054chr19_46709310_-ENSG00000245937.6ENST00000501652.4hsa-miR-320e1279665161279665227mer-m8127966515127966532141-17.5
CAediting_86358chr1_109598906_+ENSG00000245937.6ENST00000501652.4hsa-miR-197-5p1279665251279665306mer127966524127966549143-32.37
CAediting_396018chr5_1062918_-ENSG00000245937.6ENST00000501652.4hsa-miR-46351279668351279668417mer-m8127966834127966854140-12.45
CAediting_442554chr5_154685830_+ENSG00000245937.6ENST00000501652.4hsa-miR-13031280821161280821227mer-m8128082115128082136150-20.37
CAediting_604450chr7_133034877_-ENSG00000245937.6ENST00000501652.4hsa-miR-36541279665821279665887mer-m8127966581127966599140-21.04
CAediting_524911chr7_5495852_-ENSG00000245937.6ENST00000501652.4hsa-miR-589-3p1280829431280829497mer-m8128082942128082964160-20.81

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000245937.6ENST00000512185.1hsa-miR-195-3p1280037901280037967mer-m8128003789128003811150-13.53
CAediting_396018chr5_1062918_-ENSG00000245937.6ENST00000501652.4hsa-miR-46351279664541279664607mer-m8127966453127966473150-12.85

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LINC01184

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000499346.5lincRNASoverviewSoverview
ENST00000514409.4lincRNASoverviewSoverview
ENST00000501652.4lincRNASoverviewSoverview
ENST00000508878.4lincRNASoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_425268ENST00000499346.5chr5_127956805_--556.30-557.00-571.80
CAediting_425269ENST00000499346.5chr5_127956807_--557.00-557.00-571.80
CAediting_425270ENST00000499346.5chr5_127956817_--556.70-557.00-571.80
CAediting_425271ENST00000499346.5chr5_127956829_--556.30-557.00-571.80
CAediting_425272ENST00000499346.5chr5_127956839_--557.10-557.00-571.80
CAediting_425273ENST00000499346.5chr5_127956843_--559.60-557.00-571.80
CAediting_425274ENST00000499346.5chr5_127956844_--557.70-557.00-571.80
CAediting_425275ENST00000499346.5chr5_127956857_--561.30-557.00-571.80
CAediting_425276ENST00000499346.5chr5_127956863_--556.70-557.00-571.80
CAediting_425277ENST00000499346.5chr5_127956878_--556.10-557.00-571.80
CAediting_425278ENST00000499346.5chr5_127956881_--556.60-557.00-571.80
CAediting_425279ENST00000499346.5chr5_127956887_--556.30-557.00-571.80
CAediting_425280ENST00000499346.5chr5_127956892_--556.10-557.00-571.80
CAediting_425281ENST00000499346.5chr5_127956897_--564.20-557.00-571.80
CAediting_425282ENST00000499346.5chr5_127956916_--563.20-557.00-571.80
CAediting_425268ENST00000514409.4chr5_127956805_--161.30-160.80-177.90
CAediting_425269ENST00000514409.4chr5_127956807_--162.70-160.80-177.90
CAediting_425270ENST00000514409.4chr5_127956817_--164.20-160.80-177.90
CAediting_425271ENST00000514409.4chr5_127956829_--161.30-160.80-177.90
CAediting_425272ENST00000514409.4chr5_127956839_--162.50-160.80-177.90
CAediting_425273ENST00000514409.4chr5_127956843_--167.00-160.80-177.90
CAediting_425274ENST00000514409.4chr5_127956844_--162.50-160.80-177.90
CAediting_425275ENST00000514409.4chr5_127956857_--161.10-160.80-177.90
CAediting_425276ENST00000514409.4chr5_127956863_--160.10-160.80-177.90
CAediting_425277ENST00000514409.4chr5_127956878_--160.80-160.80-177.90
CAediting_425278ENST00000514409.4chr5_127956881_--161.80-160.80-177.90
CAediting_425279ENST00000514409.4chr5_127956887_--160.10-160.80-177.90
CAediting_425280ENST00000514409.4chr5_127956892_--165.00-160.80-177.90
CAediting_425281ENST00000514409.4chr5_127956897_--160.20-160.80-177.90
CAediting_425282ENST00000514409.4chr5_127956916_--162.10-160.80-177.90
CAediting_425373ENST00000501652.4chr5_128082102_--495.70-494.90-508.40
CAediting_425374ENST00000501652.4chr5_128082104_--496.00-494.90-508.40
CAediting_425375ENST00000501652.4chr5_128082116_--496.30-494.90-508.40
CAediting_425376ENST00000501652.4chr5_128082139_--499.30-494.90-508.40
CAediting_425377ENST00000501652.4chr5_128082147_--498.10-494.90-508.40
CAediting_425378ENST00000501652.4chr5_128082171_--497.90-494.90-508.40
CAediting_425379ENST00000501652.4chr5_128082179_--495.20-494.90-508.40
CAediting_425373ENST00000508878.4chr5_128082102_--275.00-274.20-288.70
CAediting_425374ENST00000508878.4chr5_128082104_--275.30-274.20-288.70
CAediting_425375ENST00000508878.4chr5_128082116_--275.60-274.20-288.70
CAediting_425376ENST00000508878.4chr5_128082139_--278.60-274.20-288.70
CAediting_425377ENST00000508878.4chr5_128082147_--277.40-274.20-288.70
CAediting_425378ENST00000508878.4chr5_128082171_--273.80-274.20-288.70
CAediting_425379ENST00000508878.4chr5_128082179_--273.50-274.20-288.70
CAediting_425380ENST00000508878.4chr5_128082193_--275.60-274.20-288.70

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Relation with ADAR for LINC01184

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_425282chr5_127956916_-0.006146074819141940.2093503609621760.01883400367029650.179998867241551..
BRCACAediting_425292chr5_128005951_-0.03352066923636240.289824453158588....
KIRPCAediting_425292chr5_128005951_-0.03156643143091950.2876720481962570.03727429322540040.279057422852416..
BRCACAediting_425293chr5_128005953_-0.009557786133140290.334743619632625....
KIRPCAediting_425293chr5_128005953_-0.03005077113150680.290176589595572....

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Relation with cancer stages for LINC01184

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for LINC01184

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for LINC01184

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LINC01184

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource