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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: NBPF13P (CAeditome ID:644861)

Gene summary for NBPF13P

check button Gene summary
Gene informationGene symbol

NBPF13P

Gene ID

644861

Gene nameNBPF member 13, pseudogene
Synonyms-
Cytomap

1q21.1

Type of genepseudo
Descriptionneuroblastoma breakpoint family member 13, pseudogene
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for NBPF13P

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000227242.3
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_93109(147059096, -), CAediting_93110(147059132, -), CAediting_93111(147095701, -), CAediting_93112(147095747, -), CAediting_93113(147095756, -), CAediting_93114(147095768, -), CAediting_93115(147095769, -), CAediting_93116(147095783, -), CAediting_93117(147095787, -), CAediting_93118(147095791, -), CAediting_93119(147095808, -), CAediting_93120(147095821, -), CAediting_93121(147095828, -), CAediting_93122(147095830, -), CAediting_93123(147095853, -), CAediting_93124(147095868, -), CAediting_93125(147095869, -), CAediting_93126(147095882, -), CAediting_93127(147095889, -), CAediting_93128(147095893, -), CAediting_93129(147095895, -), CAediting_93130(147095908, -), CAediting_93131(147095917, -), CAediting_93132(147095935, -), CAediting_93133(147095936, -), CAediting_93134(147095954, -), CAediting_93135(147095973, -), CAediting_93136(147095979, -), CAediting_93137(147095984, -), CAediting_93138(147095995, -), CAediting_93139(147096003, -), CAediting_93140(147096009, -), CAediting_93141(147096013, -), CAediting_93142(147096014, -), CAediting_93143(147096015, -), CAediting_93144(147096653, -), CAediting_93145(147096656, -), CAediting_93146(147096675, -), CAediting_93147(147096683, -), CAediting_93148(147096685, -), CAediting_93149(147096690, -), CAediting_93150(147096723, -), CAediting_93151(147096726, -), CAediting_93152(147096746, -), CAediting_93153(147096747, -), CAediting_93154(147096750, -), CAediting_93155(147096756, -), CAediting_93156(147096782, -), CAediting_93157(147096786, -), CAediting_93158(147096787, -), CAediting_93159(147096788, -), CAediting_93160(147096791, -), CAediting_93161(147096794, -), CAediting_93162(147096796, -), CAediting_93163(147096813, -), CAediting_93164(147096836, -), CAediting_93165(147096842, -), CAediting_93166(147096850, -), CAediting_93167(147096880, -), CAediting_93168(147096885, -), CAediting_93169(147096888, -), CAediting_93170(147096889, -), CAediting_93171(147096905, -), CAediting_93172(147096907, -), CAediting_93173(147099197, -), CAediting_93174(147099229, -), CAediting_93175(147099243, -), CAediting_93176(147099245, -), CAediting_93177(147099267, -), CAediting_93178(147099283, -), CAediting_93179(147099284, -), CAediting_93180(147099289, -), CAediting_93181(147099290, -), CAediting_93182(147099353, -), CAediting_93183(147099358, -), CAediting_93184(147099360, -), CAediting_93185(147099361, -), CAediting_93186(147099363, -), CAediting_93187(147099365, -), CAediting_93188(147099403, -), CAediting_93189(147099407, -), CAediting_93190(147099411, -), CAediting_93191(147099412, -), CAediting_93192(147099429, -), CAediting_93193(147099433, -),

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RNA editing positional annotations for NBPF13P using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_93109chr1_147059096_-ncRNA_intronic
CAediting_93110chr1_147059132_-ncRNA_intronic
CAediting_93111chr1_147095701_-ncRNA_intronic
CAediting_93112chr1_147095747_-ncRNA_intronic
CAediting_93113chr1_147095756_-ncRNA_intronic
CAediting_93114chr1_147095768_-ncRNA_intronic
CAediting_93115chr1_147095769_-ncRNA_intronic
CAediting_93116chr1_147095783_-ncRNA_intronic
CAediting_93117chr1_147095787_-ncRNA_intronic
CAediting_93118chr1_147095791_-ncRNA_intronic
CAediting_93119chr1_147095808_-ncRNA_intronic
CAediting_93120chr1_147095821_-ncRNA_intronic
CAediting_93121chr1_147095828_-ncRNA_intronic
CAediting_93122chr1_147095830_-ncRNA_intronic
CAediting_93123chr1_147095853_-ncRNA_intronic
CAediting_93124chr1_147095868_-ncRNA_intronic
CAediting_93125chr1_147095869_-ncRNA_intronic
CAediting_93126chr1_147095882_-ncRNA_intronic
CAediting_93127chr1_147095889_-ncRNA_intronic
CAediting_93128chr1_147095893_-ncRNA_intronic
CAediting_93129chr1_147095895_-ncRNA_intronic
CAediting_93130chr1_147095908_-ncRNA_intronic
CAediting_93131chr1_147095917_-ncRNA_intronic
CAediting_93132chr1_147095935_-ncRNA_intronic
CAediting_93133chr1_147095936_-ncRNA_intronic
CAediting_93134chr1_147095954_-ncRNA_intronic
CAediting_93135chr1_147095973_-ncRNA_intronic
CAediting_93136chr1_147095979_-ncRNA_intronic
CAediting_93137chr1_147095984_-ncRNA_intronic
CAediting_93138chr1_147095995_-ncRNA_intronic
CAediting_93139chr1_147096003_-ncRNA_intronic
CAediting_93140chr1_147096009_-ncRNA_intronic
CAediting_93141chr1_147096013_-ncRNA_intronic
CAediting_93142chr1_147096014_-ncRNA_intronic
CAediting_93143chr1_147096015_-ncRNA_intronic
CAediting_93144chr1_147096653_-ncRNA_intronic
CAediting_93145chr1_147096656_-ncRNA_intronic
CAediting_93146chr1_147096675_-ncRNA_intronic
CAediting_93147chr1_147096683_-ncRNA_intronic
CAediting_93148chr1_147096685_-ncRNA_intronic
CAediting_93149chr1_147096690_-ncRNA_intronic
CAediting_93150chr1_147096723_-ncRNA_intronic
CAediting_93151chr1_147096726_-ncRNA_intronic
CAediting_93152chr1_147096746_-ncRNA_intronic
CAediting_93153chr1_147096747_-ncRNA_intronic
CAediting_93154chr1_147096750_-ncRNA_intronic
CAediting_93155chr1_147096756_-ncRNA_intronic
CAediting_93156chr1_147096782_-ncRNA_intronic
CAediting_93157chr1_147096786_-ncRNA_intronic
CAediting_93158chr1_147096787_-ncRNA_intronic
CAediting_93159chr1_147096788_-ncRNA_intronic
CAediting_93160chr1_147096791_-ncRNA_intronic
CAediting_93161chr1_147096794_-ncRNA_intronic
CAediting_93162chr1_147096796_-ncRNA_intronic
CAediting_93163chr1_147096813_-ncRNA_intronic
CAediting_93164chr1_147096836_-ncRNA_intronic
CAediting_93165chr1_147096842_-ncRNA_intronic
CAediting_93166chr1_147096850_-ncRNA_intronic
CAediting_93167chr1_147096880_-ncRNA_intronic
CAediting_93168chr1_147096885_-ncRNA_intronic
CAediting_93169chr1_147096888_-ncRNA_intronic
CAediting_93170chr1_147096889_-ncRNA_intronic
CAediting_93171chr1_147096905_-ncRNA_intronic
CAediting_93172chr1_147096907_-ncRNA_intronic
CAediting_93173chr1_147099197_-ncRNA_intronic
CAediting_93174chr1_147099229_-ncRNA_intronic
CAediting_93175chr1_147099243_-ncRNA_intronic
CAediting_93176chr1_147099245_-ncRNA_intronic
CAediting_93177chr1_147099267_-ncRNA_intronic
CAediting_93178chr1_147099283_-ncRNA_intronic
CAediting_93179chr1_147099284_-ncRNA_intronic
CAediting_93180chr1_147099289_-ncRNA_intronic
CAediting_93181chr1_147099290_-ncRNA_intronic
CAediting_93182chr1_147099353_-ncRNA_intronic
CAediting_93183chr1_147099358_-ncRNA_intronic
CAediting_93184chr1_147099360_-ncRNA_intronic
CAediting_93185chr1_147099361_-ncRNA_intronic
CAediting_93186chr1_147099363_-ncRNA_intronic
CAediting_93187chr1_147099365_-ncRNA_intronic
CAediting_93188chr1_147099403_-ncRNA_intronic
CAediting_93189chr1_147099407_-ncRNA_intronic
CAediting_93190chr1_147099411_-ncRNA_intronic
CAediting_93191chr1_147099412_-ncRNA_intronic
CAediting_93192chr1_147099429_-ncRNA_intronic
CAediting_93193chr1_147099433_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_93109chr1_147059096_-SINEAluAluJo
CAediting_93110chr1_147059132_-SINEAluAluJo
CAediting_93111chr1_147095701_-LINEL1L1M4
CAediting_93112chr1_147095747_-SINEAluAluSx1
CAediting_93113chr1_147095756_-SINEAluAluSx1
CAediting_93114chr1_147095768_-SINEAluAluSx1
CAediting_93115chr1_147095769_-SINEAluAluSx1
CAediting_93116chr1_147095783_-SINEAluAluSx1
CAediting_93117chr1_147095787_-SINEAluAluSx1
CAediting_93118chr1_147095791_-SINEAluAluSx1
CAediting_93119chr1_147095808_-SINEAluAluSx1
CAediting_93120chr1_147095821_-SINEAluAluSx1
CAediting_93121chr1_147095828_-SINEAluAluSx1
CAediting_93122chr1_147095830_-SINEAluAluSx1
CAediting_93123chr1_147095853_-SINEAluAluSx1
CAediting_93124chr1_147095868_-SINEAluAluSx1
CAediting_93125chr1_147095869_-SINEAluAluSx1
CAediting_93126chr1_147095882_-SINEAluAluSx1
CAediting_93127chr1_147095889_-SINEAluAluSx1
CAediting_93128chr1_147095893_-SINEAluAluSx1
CAediting_93129chr1_147095895_-SINEAluAluSx1
CAediting_93130chr1_147095908_-SINEAluAluSx1
CAediting_93131chr1_147095917_-SINEAluAluSx1
CAediting_93132chr1_147095935_-SINEAluAluSx1
CAediting_93133chr1_147095936_-SINEAluAluSx1
CAediting_93134chr1_147095954_-SINEAluAluSx1
CAediting_93135chr1_147095973_-SINEAluAluSx1
CAediting_93136chr1_147095979_-SINEAluAluSx1
CAediting_93137chr1_147095984_-SINEAluAluSx1
CAediting_93138chr1_147095995_-SINEAluAluSx1
CAediting_93139chr1_147096003_-SINEAluAluSx1
CAediting_93140chr1_147096009_-SINEAluAluSx1
CAediting_93141chr1_147096013_-SINEAluAluSx1
CAediting_93142chr1_147096014_-SINEAluAluSx1
CAediting_93143chr1_147096015_-SINEAluAluSx1
CAediting_93144chr1_147096653_-SINEAluAluSx4
CAediting_93145chr1_147096656_-SINEAluAluSx4
CAediting_93146chr1_147096675_-SINEAluAluSx4
CAediting_93147chr1_147096683_-SINEAluAluSx4
CAediting_93148chr1_147096685_-SINEAluAluSx4
CAediting_93149chr1_147096690_-SINEAluAluSx4
CAediting_93150chr1_147096723_-SINEAluAluSx4
CAediting_93151chr1_147096726_-SINEAluAluSx4
CAediting_93152chr1_147096746_-SINEAluAluSx4
CAediting_93153chr1_147096747_-SINEAluAluSx4
CAediting_93154chr1_147096750_-SINEAluAluSx4
CAediting_93155chr1_147096756_-SINEAluAluSx4
CAediting_93156chr1_147096782_-SINEAluAluSx4
CAediting_93157chr1_147096786_-SINEAluAluSx4
CAediting_93158chr1_147096787_-SINEAluAluSx4
CAediting_93159chr1_147096788_-SINEAluAluSx4
CAediting_93160chr1_147096791_-SINEAluAluSx4
CAediting_93161chr1_147096794_-SINEAluAluSx4
CAediting_93162chr1_147096796_-SINEAluAluSx4
CAediting_93163chr1_147096813_-SINEAluAluSx4
CAediting_93164chr1_147096836_-SINEAluAluSx4
CAediting_93165chr1_147096842_-SINEAluAluSx4
CAediting_93166chr1_147096850_-SINEAluAluSx4
CAediting_93167chr1_147096880_-SINEAluAluSx4
CAediting_93168chr1_147096885_-SINEAluAluSx4
CAediting_93169chr1_147096888_-SINEAluAluSx4
CAediting_93170chr1_147096889_-SINEAluAluSx4
CAediting_93171chr1_147096905_-SINEAluAluSx4
CAediting_93172chr1_147096907_-SINEAluAluSx4
CAediting_93173chr1_147099197_-LINEL1L1MC4
CAediting_93174chr1_147099229_-LINEL1L1MC4
CAediting_93175chr1_147099243_-LINEL1L1MC4
CAediting_93176chr1_147099245_-LINEL1L1MC4
CAediting_93182chr1_147099353_-LINEL1L1MC4
CAediting_93183chr1_147099358_-LINEL1L1MC4
CAediting_93184chr1_147099360_-LINEL1L1MC4
CAediting_93185chr1_147099361_-LINEL1L1MC4
CAediting_93186chr1_147099363_-LINEL1L1MC4
CAediting_93187chr1_147099365_-LINEL1L1MC4
CAediting_93188chr1_147099403_-LINEL1L1MC4
CAediting_93189chr1_147099407_-LINEL1L1MC4
CAediting_93190chr1_147099411_-LINEL1L1MC4
CAediting_93191chr1_147099412_-LINEL1L1MC4
CAediting_93192chr1_147099429_-LINEL1L1MC4
CAediting_93193chr1_147099433_-LINEL1L1MC4

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RNA A-to-I editing events in the alternative splicing sites for NBPF13P

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000227242.3.NBPF13P.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000227242.3.NBPF13P.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NBPF13P

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for NBPF13P

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for NBPF13P

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for NBPF13P

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for NBPF13P

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LIHCCAediting_93121chr1_147095828_-0.01086012802735490.202789876317035....
LIHCCAediting_93122chr1_147095830_-0.003634788211875530.233767031700723....
LIHCCAediting_93123chr1_147095853_-1.18137664096243e-050.39442032917452....
LIHCCAediting_93125chr1_147095869_-0.003175394343113840.311099852732938....
LIHCCAediting_93130chr1_147095908_-0.02149649993515790.190827460401319....
LIHCCAediting_93133chr1_147095936_-0.004561869958222150.296381722191571....
LIHCCAediting_93138chr1_147095995_-0.02852785202897410.201671895474717....
LIHCCAediting_93142chr1_147096014_-0.002377697170115570.339253327666364....
LIHCCAediting_93174chr1_147099229_-2.07903901944994e-070.431999316766852....
LIHCCAediting_93175chr1_147099243_-0.0003211706552507080.227517726477372....
LIHCCAediting_93176chr1_147099245_-1.03892895438548e-080.361116239069964....
LIHCCAediting_93177chr1_147099267_-0.001970323553157440.200883278631939....
LIHCCAediting_93178chr1_147099283_-5.12426753640164e-100.523680212345599....
LIHCCAediting_93182chr1_147099353_-1.5970509162186e-200.560660076852606....
LIHCCAediting_93183chr1_147099358_-9.6086305950301e-110.478018785788708....
LIHCCAediting_93185chr1_147099361_-0.01011433076185220.34715475123853....
LIHCCAediting_93188chr1_147099403_-1.54531504543572e-120.459760519070252....
LIHCCAediting_93190chr1_147099411_-9.3244930565512e-100.440666184623802....
LIHCCAediting_93192chr1_147099429_-2.74540588840427e-070.356390742297454....

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Relation with cancer stages for NBPF13P

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
LIHCpathologic_stageCAediting_93174chr1_147099229_-0.041829568063550.184573233283371
LIHCpathologic_stageCAediting_93178chr1_147099283_-0.04286074808076390.190027004857858

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Relation with survival for NBPF13P

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LIHCCAediting_93111chr1_147095701_-0.03620894213034890.04074879.7114
LIHCCAediting_93115chr1_147095769_-0.001040683697130510.00231741343235000

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RelatedDrugs for NBPF13P

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NBPF13P

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource