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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: NBPF13P (CAeditome ID:644861) |
Gene summary for NBPF13P |
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Gene information | Gene symbol | NBPF13P | Gene ID | 644861 |
Gene name | NBPF member 13, pseudogene | |
Synonyms | - | |
Cytomap | 1q21.1 | |
Type of gene | pseudo | |
Description | neuroblastoma breakpoint family member 13, pseudogene | |
Modification date | 20210518 | |
UniProtAcc | . | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for NBPF13P |
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CAediting_93109(147059096, -), CAediting_93110(147059132, -), CAediting_93111(147095701, -), CAediting_93112(147095747, -), CAediting_93113(147095756, -), CAediting_93114(147095768, -), CAediting_93115(147095769, -), CAediting_93116(147095783, -), CAediting_93117(147095787, -), CAediting_93118(147095791, -), CAediting_93119(147095808, -), CAediting_93120(147095821, -), CAediting_93121(147095828, -), CAediting_93122(147095830, -), CAediting_93123(147095853, -), CAediting_93124(147095868, -), CAediting_93125(147095869, -), CAediting_93126(147095882, -), CAediting_93127(147095889, -), CAediting_93128(147095893, -), CAediting_93129(147095895, -), CAediting_93130(147095908, -), CAediting_93131(147095917, -), CAediting_93132(147095935, -), CAediting_93133(147095936, -), CAediting_93134(147095954, -), CAediting_93135(147095973, -), CAediting_93136(147095979, -), CAediting_93137(147095984, -), CAediting_93138(147095995, -), CAediting_93139(147096003, -), CAediting_93140(147096009, -), CAediting_93141(147096013, -), CAediting_93142(147096014, -), CAediting_93143(147096015, -), CAediting_93144(147096653, -), CAediting_93145(147096656, -), CAediting_93146(147096675, -), CAediting_93147(147096683, -), CAediting_93148(147096685, -), CAediting_93149(147096690, -), CAediting_93150(147096723, -), CAediting_93151(147096726, -), CAediting_93152(147096746, -), CAediting_93153(147096747, -), CAediting_93154(147096750, -), CAediting_93155(147096756, -), CAediting_93156(147096782, -), CAediting_93157(147096786, -), CAediting_93158(147096787, -), CAediting_93159(147096788, -), CAediting_93160(147096791, -), CAediting_93161(147096794, -), CAediting_93162(147096796, -), CAediting_93163(147096813, -), CAediting_93164(147096836, -), CAediting_93165(147096842, -), CAediting_93166(147096850, -), CAediting_93167(147096880, -), CAediting_93168(147096885, -), CAediting_93169(147096888, -), CAediting_93170(147096889, -), CAediting_93171(147096905, -), CAediting_93172(147096907, -), CAediting_93173(147099197, -), CAediting_93174(147099229, -), CAediting_93175(147099243, -), CAediting_93176(147099245, -), CAediting_93177(147099267, -), CAediting_93178(147099283, -), CAediting_93179(147099284, -), CAediting_93180(147099289, -), CAediting_93181(147099290, -), CAediting_93182(147099353, -), CAediting_93183(147099358, -), CAediting_93184(147099360, -), CAediting_93185(147099361, -), CAediting_93186(147099363, -), CAediting_93187(147099365, -), CAediting_93188(147099403, -), CAediting_93189(147099407, -), CAediting_93190(147099411, -), CAediting_93191(147099412, -), CAediting_93192(147099429, -), CAediting_93193(147099433, -), |
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RNA editing positional annotations for NBPF13P using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_93109 | chr1_147059096_- | ncRNA_intronic |
CAediting_93110 | chr1_147059132_- | ncRNA_intronic |
CAediting_93111 | chr1_147095701_- | ncRNA_intronic |
CAediting_93112 | chr1_147095747_- | ncRNA_intronic |
CAediting_93113 | chr1_147095756_- | ncRNA_intronic |
CAediting_93114 | chr1_147095768_- | ncRNA_intronic |
CAediting_93115 | chr1_147095769_- | ncRNA_intronic |
CAediting_93116 | chr1_147095783_- | ncRNA_intronic |
CAediting_93117 | chr1_147095787_- | ncRNA_intronic |
CAediting_93118 | chr1_147095791_- | ncRNA_intronic |
CAediting_93119 | chr1_147095808_- | ncRNA_intronic |
CAediting_93120 | chr1_147095821_- | ncRNA_intronic |
CAediting_93121 | chr1_147095828_- | ncRNA_intronic |
CAediting_93122 | chr1_147095830_- | ncRNA_intronic |
CAediting_93123 | chr1_147095853_- | ncRNA_intronic |
CAediting_93124 | chr1_147095868_- | ncRNA_intronic |
CAediting_93125 | chr1_147095869_- | ncRNA_intronic |
CAediting_93126 | chr1_147095882_- | ncRNA_intronic |
CAediting_93127 | chr1_147095889_- | ncRNA_intronic |
CAediting_93128 | chr1_147095893_- | ncRNA_intronic |
CAediting_93129 | chr1_147095895_- | ncRNA_intronic |
CAediting_93130 | chr1_147095908_- | ncRNA_intronic |
CAediting_93131 | chr1_147095917_- | ncRNA_intronic |
CAediting_93132 | chr1_147095935_- | ncRNA_intronic |
CAediting_93133 | chr1_147095936_- | ncRNA_intronic |
CAediting_93134 | chr1_147095954_- | ncRNA_intronic |
CAediting_93135 | chr1_147095973_- | ncRNA_intronic |
CAediting_93136 | chr1_147095979_- | ncRNA_intronic |
CAediting_93137 | chr1_147095984_- | ncRNA_intronic |
CAediting_93138 | chr1_147095995_- | ncRNA_intronic |
CAediting_93139 | chr1_147096003_- | ncRNA_intronic |
CAediting_93140 | chr1_147096009_- | ncRNA_intronic |
CAediting_93141 | chr1_147096013_- | ncRNA_intronic |
CAediting_93142 | chr1_147096014_- | ncRNA_intronic |
CAediting_93143 | chr1_147096015_- | ncRNA_intronic |
CAediting_93144 | chr1_147096653_- | ncRNA_intronic |
CAediting_93145 | chr1_147096656_- | ncRNA_intronic |
CAediting_93146 | chr1_147096675_- | ncRNA_intronic |
CAediting_93147 | chr1_147096683_- | ncRNA_intronic |
CAediting_93148 | chr1_147096685_- | ncRNA_intronic |
CAediting_93149 | chr1_147096690_- | ncRNA_intronic |
CAediting_93150 | chr1_147096723_- | ncRNA_intronic |
CAediting_93151 | chr1_147096726_- | ncRNA_intronic |
CAediting_93152 | chr1_147096746_- | ncRNA_intronic |
CAediting_93153 | chr1_147096747_- | ncRNA_intronic |
CAediting_93154 | chr1_147096750_- | ncRNA_intronic |
CAediting_93155 | chr1_147096756_- | ncRNA_intronic |
CAediting_93156 | chr1_147096782_- | ncRNA_intronic |
CAediting_93157 | chr1_147096786_- | ncRNA_intronic |
CAediting_93158 | chr1_147096787_- | ncRNA_intronic |
CAediting_93159 | chr1_147096788_- | ncRNA_intronic |
CAediting_93160 | chr1_147096791_- | ncRNA_intronic |
CAediting_93161 | chr1_147096794_- | ncRNA_intronic |
CAediting_93162 | chr1_147096796_- | ncRNA_intronic |
CAediting_93163 | chr1_147096813_- | ncRNA_intronic |
CAediting_93164 | chr1_147096836_- | ncRNA_intronic |
CAediting_93165 | chr1_147096842_- | ncRNA_intronic |
CAediting_93166 | chr1_147096850_- | ncRNA_intronic |
CAediting_93167 | chr1_147096880_- | ncRNA_intronic |
CAediting_93168 | chr1_147096885_- | ncRNA_intronic |
CAediting_93169 | chr1_147096888_- | ncRNA_intronic |
CAediting_93170 | chr1_147096889_- | ncRNA_intronic |
CAediting_93171 | chr1_147096905_- | ncRNA_intronic |
CAediting_93172 | chr1_147096907_- | ncRNA_intronic |
CAediting_93173 | chr1_147099197_- | ncRNA_intronic |
CAediting_93174 | chr1_147099229_- | ncRNA_intronic |
CAediting_93175 | chr1_147099243_- | ncRNA_intronic |
CAediting_93176 | chr1_147099245_- | ncRNA_intronic |
CAediting_93177 | chr1_147099267_- | ncRNA_intronic |
CAediting_93178 | chr1_147099283_- | ncRNA_intronic |
CAediting_93179 | chr1_147099284_- | ncRNA_intronic |
CAediting_93180 | chr1_147099289_- | ncRNA_intronic |
CAediting_93181 | chr1_147099290_- | ncRNA_intronic |
CAediting_93182 | chr1_147099353_- | ncRNA_intronic |
CAediting_93183 | chr1_147099358_- | ncRNA_intronic |
CAediting_93184 | chr1_147099360_- | ncRNA_intronic |
CAediting_93185 | chr1_147099361_- | ncRNA_intronic |
CAediting_93186 | chr1_147099363_- | ncRNA_intronic |
CAediting_93187 | chr1_147099365_- | ncRNA_intronic |
CAediting_93188 | chr1_147099403_- | ncRNA_intronic |
CAediting_93189 | chr1_147099407_- | ncRNA_intronic |
CAediting_93190 | chr1_147099411_- | ncRNA_intronic |
CAediting_93191 | chr1_147099412_- | ncRNA_intronic |
CAediting_93192 | chr1_147099429_- | ncRNA_intronic |
CAediting_93193 | chr1_147099433_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_93109 | chr1_147059096_- | SINE | Alu | AluJo |
CAediting_93110 | chr1_147059132_- | SINE | Alu | AluJo |
CAediting_93111 | chr1_147095701_- | LINE | L1 | L1M4 |
CAediting_93112 | chr1_147095747_- | SINE | Alu | AluSx1 |
CAediting_93113 | chr1_147095756_- | SINE | Alu | AluSx1 |
CAediting_93114 | chr1_147095768_- | SINE | Alu | AluSx1 |
CAediting_93115 | chr1_147095769_- | SINE | Alu | AluSx1 |
CAediting_93116 | chr1_147095783_- | SINE | Alu | AluSx1 |
CAediting_93117 | chr1_147095787_- | SINE | Alu | AluSx1 |
CAediting_93118 | chr1_147095791_- | SINE | Alu | AluSx1 |
CAediting_93119 | chr1_147095808_- | SINE | Alu | AluSx1 |
CAediting_93120 | chr1_147095821_- | SINE | Alu | AluSx1 |
CAediting_93121 | chr1_147095828_- | SINE | Alu | AluSx1 |
CAediting_93122 | chr1_147095830_- | SINE | Alu | AluSx1 |
CAediting_93123 | chr1_147095853_- | SINE | Alu | AluSx1 |
CAediting_93124 | chr1_147095868_- | SINE | Alu | AluSx1 |
CAediting_93125 | chr1_147095869_- | SINE | Alu | AluSx1 |
CAediting_93126 | chr1_147095882_- | SINE | Alu | AluSx1 |
CAediting_93127 | chr1_147095889_- | SINE | Alu | AluSx1 |
CAediting_93128 | chr1_147095893_- | SINE | Alu | AluSx1 |
CAediting_93129 | chr1_147095895_- | SINE | Alu | AluSx1 |
CAediting_93130 | chr1_147095908_- | SINE | Alu | AluSx1 |
CAediting_93131 | chr1_147095917_- | SINE | Alu | AluSx1 |
CAediting_93132 | chr1_147095935_- | SINE | Alu | AluSx1 |
CAediting_93133 | chr1_147095936_- | SINE | Alu | AluSx1 |
CAediting_93134 | chr1_147095954_- | SINE | Alu | AluSx1 |
CAediting_93135 | chr1_147095973_- | SINE | Alu | AluSx1 |
CAediting_93136 | chr1_147095979_- | SINE | Alu | AluSx1 |
CAediting_93137 | chr1_147095984_- | SINE | Alu | AluSx1 |
CAediting_93138 | chr1_147095995_- | SINE | Alu | AluSx1 |
CAediting_93139 | chr1_147096003_- | SINE | Alu | AluSx1 |
CAediting_93140 | chr1_147096009_- | SINE | Alu | AluSx1 |
CAediting_93141 | chr1_147096013_- | SINE | Alu | AluSx1 |
CAediting_93142 | chr1_147096014_- | SINE | Alu | AluSx1 |
CAediting_93143 | chr1_147096015_- | SINE | Alu | AluSx1 |
CAediting_93144 | chr1_147096653_- | SINE | Alu | AluSx4 |
CAediting_93145 | chr1_147096656_- | SINE | Alu | AluSx4 |
CAediting_93146 | chr1_147096675_- | SINE | Alu | AluSx4 |
CAediting_93147 | chr1_147096683_- | SINE | Alu | AluSx4 |
CAediting_93148 | chr1_147096685_- | SINE | Alu | AluSx4 |
CAediting_93149 | chr1_147096690_- | SINE | Alu | AluSx4 |
CAediting_93150 | chr1_147096723_- | SINE | Alu | AluSx4 |
CAediting_93151 | chr1_147096726_- | SINE | Alu | AluSx4 |
CAediting_93152 | chr1_147096746_- | SINE | Alu | AluSx4 |
CAediting_93153 | chr1_147096747_- | SINE | Alu | AluSx4 |
CAediting_93154 | chr1_147096750_- | SINE | Alu | AluSx4 |
CAediting_93155 | chr1_147096756_- | SINE | Alu | AluSx4 |
CAediting_93156 | chr1_147096782_- | SINE | Alu | AluSx4 |
CAediting_93157 | chr1_147096786_- | SINE | Alu | AluSx4 |
CAediting_93158 | chr1_147096787_- | SINE | Alu | AluSx4 |
CAediting_93159 | chr1_147096788_- | SINE | Alu | AluSx4 |
CAediting_93160 | chr1_147096791_- | SINE | Alu | AluSx4 |
CAediting_93161 | chr1_147096794_- | SINE | Alu | AluSx4 |
CAediting_93162 | chr1_147096796_- | SINE | Alu | AluSx4 |
CAediting_93163 | chr1_147096813_- | SINE | Alu | AluSx4 |
CAediting_93164 | chr1_147096836_- | SINE | Alu | AluSx4 |
CAediting_93165 | chr1_147096842_- | SINE | Alu | AluSx4 |
CAediting_93166 | chr1_147096850_- | SINE | Alu | AluSx4 |
CAediting_93167 | chr1_147096880_- | SINE | Alu | AluSx4 |
CAediting_93168 | chr1_147096885_- | SINE | Alu | AluSx4 |
CAediting_93169 | chr1_147096888_- | SINE | Alu | AluSx4 |
CAediting_93170 | chr1_147096889_- | SINE | Alu | AluSx4 |
CAediting_93171 | chr1_147096905_- | SINE | Alu | AluSx4 |
CAediting_93172 | chr1_147096907_- | SINE | Alu | AluSx4 |
CAediting_93173 | chr1_147099197_- | LINE | L1 | L1MC4 |
CAediting_93174 | chr1_147099229_- | LINE | L1 | L1MC4 |
CAediting_93175 | chr1_147099243_- | LINE | L1 | L1MC4 |
CAediting_93176 | chr1_147099245_- | LINE | L1 | L1MC4 |
CAediting_93182 | chr1_147099353_- | LINE | L1 | L1MC4 |
CAediting_93183 | chr1_147099358_- | LINE | L1 | L1MC4 |
CAediting_93184 | chr1_147099360_- | LINE | L1 | L1MC4 |
CAediting_93185 | chr1_147099361_- | LINE | L1 | L1MC4 |
CAediting_93186 | chr1_147099363_- | LINE | L1 | L1MC4 |
CAediting_93187 | chr1_147099365_- | LINE | L1 | L1MC4 |
CAediting_93188 | chr1_147099403_- | LINE | L1 | L1MC4 |
CAediting_93189 | chr1_147099407_- | LINE | L1 | L1MC4 |
CAediting_93190 | chr1_147099411_- | LINE | L1 | L1MC4 |
CAediting_93191 | chr1_147099412_- | LINE | L1 | L1MC4 |
CAediting_93192 | chr1_147099429_- | LINE | L1 | L1MC4 |
CAediting_93193 | chr1_147099433_- | LINE | L1 | L1MC4 |
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RNA A-to-I editing events in the alternative splicing sites for NBPF13P |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NBPF13P |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for NBPF13P |
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The effects of the RNA editing to the miRNA binding sites for NBPF13P |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for NBPF13P |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for NBPF13P |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LIHC | CAediting_93121 | chr1_147095828_- | 0.0108601280273549 | 0.202789876317035 | . | . | . | . |
LIHC | CAediting_93122 | chr1_147095830_- | 0.00363478821187553 | 0.233767031700723 | . | . | . | . |
LIHC | CAediting_93123 | chr1_147095853_- | 1.18137664096243e-05 | 0.39442032917452 | . | . | . | . |
LIHC | CAediting_93125 | chr1_147095869_- | 0.00317539434311384 | 0.311099852732938 | . | . | . | . |
LIHC | CAediting_93130 | chr1_147095908_- | 0.0214964999351579 | 0.190827460401319 | . | . | . | . |
LIHC | CAediting_93133 | chr1_147095936_- | 0.00456186995822215 | 0.296381722191571 | . | . | . | . |
LIHC | CAediting_93138 | chr1_147095995_- | 0.0285278520289741 | 0.201671895474717 | . | . | . | . |
LIHC | CAediting_93142 | chr1_147096014_- | 0.00237769717011557 | 0.339253327666364 | . | . | . | . |
LIHC | CAediting_93174 | chr1_147099229_- | 2.07903901944994e-07 | 0.431999316766852 | . | . | . | . |
LIHC | CAediting_93175 | chr1_147099243_- | 0.000321170655250708 | 0.227517726477372 | . | . | . | . |
LIHC | CAediting_93176 | chr1_147099245_- | 1.03892895438548e-08 | 0.361116239069964 | . | . | . | . |
LIHC | CAediting_93177 | chr1_147099267_- | 0.00197032355315744 | 0.200883278631939 | . | . | . | . |
LIHC | CAediting_93178 | chr1_147099283_- | 5.12426753640164e-10 | 0.523680212345599 | . | . | . | . |
LIHC | CAediting_93182 | chr1_147099353_- | 1.5970509162186e-20 | 0.560660076852606 | . | . | . | . |
LIHC | CAediting_93183 | chr1_147099358_- | 9.6086305950301e-11 | 0.478018785788708 | . | . | . | . |
LIHC | CAediting_93185 | chr1_147099361_- | 0.0101143307618522 | 0.34715475123853 | . | . | . | . |
LIHC | CAediting_93188 | chr1_147099403_- | 1.54531504543572e-12 | 0.459760519070252 | . | . | . | . |
LIHC | CAediting_93190 | chr1_147099411_- | 9.3244930565512e-10 | 0.440666184623802 | . | . | . | . |
LIHC | CAediting_93192 | chr1_147099429_- | 2.74540588840427e-07 | 0.356390742297454 | . | . | . | . |
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Relation with cancer stages for NBPF13P |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
LIHC | pathologic_stage | CAediting_93174 | chr1_147099229_- | 0.04182956806355 | 0.184573233283371 |
LIHC | pathologic_stage | CAediting_93178 | chr1_147099283_- | 0.0428607480807639 | 0.190027004857858 |
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Relation with survival for NBPF13P |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
LIHC | CAediting_93111 | chr1_147095701_- | 0.0362089421303489 | 0.040748 | 79.7114 |
LIHC | CAediting_93115 | chr1_147095769_- | 0.00104068369713051 | 0.00231741 | 343235000 |
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RelatedDrugs for NBPF13P |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NBPF13P |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |