Home

Download

Statistics

Examples

Help

Contact

Editing gene: TRAF3IP2-AS1 (CAeditome ID:643749)

Gene summary for TRAF3IP2-AS1

Gene summary

Gene information	Gene symbol	TRAF3IP2-AS1
	Gene ID	643749
	Gene name	TRAF3IP2 antisense RNA 1
	Synonyms	C6UAS\|C6orf3\|NCRNA00248\|TRAF3IP2-AS2
	Cytomap	6q21
	Type of gene	ncRNA
	Description	TRAF3IP2 antisense RNA 1 (non-protein coding)TRAF3IP2 antisense RNA 2 (non-protein coding)
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

Top

RNA A-to-I events for TRAF3IP2-AS1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000231889.6

RNA A-to-I editing events in Cancer.

CAediting_501157(111486067, +), CAediting_501158(111486181, +), CAediting_501159(111486241, +), CAediting_501160(111486807, +), CAediting_501161(111486827, +), CAediting_501162(111486846, +), CAediting_501163(111488008, +), CAediting_501164(111488037, +), CAediting_501165(111488062, +), CAediting_501166(111488063, +), CAediting_501167(111488080, +), CAediting_501168(111488096, +), CAediting_501169(111489054, +), CAediting_501170(111489073, +), CAediting_501171(111489216, +), CAediting_501172(111489236, +), CAediting_501173(111489243, +), CAediting_501174(111489245, +), CAediting_501175(111489246, +), CAediting_501176(111489251, +), CAediting_501177(111489252, +), CAediting_501178(111489253, +), CAediting_501179(111489258, +), CAediting_501180(111489262, +), CAediting_501181(111489267, +), CAediting_501182(111489270, +), CAediting_501183(111489273, +), CAediting_501184(111489278, +), CAediting_501185(111489279, +), CAediting_501186(111489449, +), CAediting_501187(111489455, +), CAediting_501188(111489456, +), CAediting_501189(111489461, +), CAediting_501190(111489476, +), CAediting_501191(111489501, +), CAediting_501192(111489509, +), CAediting_501193(111489510, +), CAediting_501194(111489512, +), CAediting_501195(111489515, +), CAediting_501196(111489580, +), CAediting_501197(111489639, +), CAediting_501198(111489640, +), CAediting_501199(111491000, +), CAediting_501200(111491060, +), CAediting_501201(111491187, +), CAediting_501202(111491194, +), CAediting_501203(111491197, +), CAediting_501204(111491198, +), CAediting_501205(111491223, +), CAediting_501206(111491302, +), CAediting_501207(111491367, +), CAediting_501208(111491826, +), CAediting_501209(111492506, +), CAediting_501210(111492514, +), CAediting_501211(111492531, +), CAediting_501212(111492536, +), CAediting_501213(111492537, +), CAediting_501214(111492563, +), CAediting_501215(111492586, +), CAediting_501216(111492622, +), CAediting_501217(111492648, +), CAediting_501218(111492675, +), CAediting_501219(111492678, +), CAediting_501220(111492684, +), CAediting_501221(111492749, +), CAediting_501222(111492754, +), CAediting_501223(111493955, +), CAediting_501224(111494454, +), CAediting_501225(111494837, +), CAediting_501226(111497098, +), CAediting_501227(111497139, +), CAediting_501228(111497171, +), CAediting_501229(111497281, +), CAediting_501230(111501399, +), CAediting_501231(111501606, +), CAediting_501232(111502835, +), CAediting_501233(111502836, +), CAediting_501234(111504869, +), CAediting_501235(111504883, +), CAediting_501236(111504950, +), CAediting_501237(111508146, +), CAediting_501238(111508330, +), CAediting_501239(111508652, +), CAediting_501240(111508668, +), CAediting_501241(111508693, +), CAediting_501242(111508703, +), CAediting_501243(111508715, +), CAediting_501244(111508724, +), CAediting_501245(111512388, +), CAediting_501246(111513229, +), CAediting_501247(111513253, +), CAediting_501248(111513260, +), CAediting_501249(111513272, +), CAediting_501250(111513369, +), CAediting_501251(111513420, +), CAediting_501252(111514706, +), CAediting_501253(111514710, +), CAediting_501254(111514718, +), CAediting_501255(111514742, +), CAediting_501256(111514746, +), CAediting_501257(111514748, +), CAediting_501258(111514751, +), CAediting_501259(111514813, +), CAediting_501260(111514817, +), CAediting_501261(111514833, +), CAediting_501262(111514845, +), CAediting_501263(111514854, +), CAediting_501264(111514874, +), CAediting_501265(111515077, +), CAediting_501266(111515078, +), CAediting_501267(111515085, +), CAediting_501268(111515100, +), CAediting_501269(111515102, +), CAediting_501270(111515103, +), CAediting_501271(111515135, +), CAediting_501272(111515141, +), CAediting_501273(111515147, +), CAediting_501274(111515151, +), CAediting_501275(111515154, +), CAediting_501276(111515168, +), CAediting_501277(111515212, +), CAediting_501278(111519047, +), CAediting_501279(111519117, +), CAediting_501280(111519123, +), CAediting_501281(111519141, +), CAediting_501282(111519149, +), CAediting_501283(111519246, +), CAediting_501284(111519597, +), CAediting_501285(111519682, +), CAediting_501286(111519683, +), CAediting_501287(111519692, +), CAediting_501288(111520537, +), CAediting_501289(111520555, +), CAediting_501290(111520575, +), CAediting_501291(111520665, +), CAediting_501292(111520699, +), CAediting_501293(111520705, +), CAediting_501294(111520753, +), CAediting_501295(111520754, +), CAediting_501296(111523185, +), CAediting_501297(111526746, +), CAediting_501298(111529681, +), CAediting_501299(111529695, +), CAediting_501300(111529698, +), CAediting_501301(111529705, +), CAediting_501302(111529708, +), CAediting_501303(111529781, +), CAediting_501304(111529782, +), CAediting_501305(111529786, +), CAediting_501306(111535670, +), CAediting_501307(111535860, +), CAediting_501308(111535861, +), CAediting_501309(111535878, +), CAediting_501310(111535904, +), CAediting_501311(111535927, +), CAediting_501312(111535928, +), CAediting_501313(111535970, +), CAediting_501314(111535971, +), CAediting_501315(111535975, +), CAediting_501316(111535988, +), CAediting_501317(111535995, +), CAediting_501318(111536001, +), CAediting_501319(111536049, +), CAediting_501320(111536053, +), CAediting_501321(111536066, +), CAediting_501322(111536103, +), CAediting_501323(111536507, +), CAediting_501324(111536531, +), CAediting_501325(111536610, +), CAediting_501326(111536656, +), CAediting_501327(111536673, +), CAediting_501328(111546257, +), CAediting_501329(111546258, +), CAediting_501330(111546301, +), CAediting_501331(111547298, +), CAediting_501332(111553540, +), CAediting_501333(111553565, +), CAediting_501334(111553575, +), CAediting_501335(111553578, +), CAediting_501336(111553606, +), CAediting_501337(111553607, +), CAediting_501338(111553846, +), CAediting_501339(111553850, +), CAediting_501340(111553851, +), CAediting_501341(111554030, +), CAediting_501342(111554031, +), CAediting_501343(111554057, +), CAediting_501344(111554070, +), CAediting_501345(111554339, +),

Top

RNA editing positional annotations for TRAF3IP2-AS1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_501157	chr6_111486067_+	ncRNA_intronic
CAediting_501158	chr6_111486181_+	ncRNA_intronic
CAediting_501159	chr6_111486241_+	ncRNA_intronic
CAediting_501160	chr6_111486807_+	ncRNA_intronic
CAediting_501161	chr6_111486827_+	ncRNA_intronic
CAediting_501162	chr6_111486846_+	ncRNA_intronic
CAediting_501163	chr6_111488008_+	ncRNA_intronic
CAediting_501164	chr6_111488037_+	ncRNA_intronic
CAediting_501165	chr6_111488062_+	ncRNA_intronic
CAediting_501166	chr6_111488063_+	ncRNA_intronic
CAediting_501167	chr6_111488080_+	ncRNA_intronic
CAediting_501168	chr6_111488096_+	ncRNA_intronic
CAediting_501169	chr6_111489054_+	ncRNA_intronic
CAediting_501170	chr6_111489073_+	ncRNA_intronic
CAediting_501171	chr6_111489216_+	ncRNA_intronic
CAediting_501172	chr6_111489236_+	ncRNA_intronic
CAediting_501173	chr6_111489243_+	ncRNA_intronic
CAediting_501174	chr6_111489245_+	ncRNA_intronic
CAediting_501175	chr6_111489246_+	ncRNA_intronic
CAediting_501176	chr6_111489251_+	ncRNA_intronic
CAediting_501177	chr6_111489252_+	ncRNA_intronic
CAediting_501178	chr6_111489253_+	ncRNA_intronic
CAediting_501179	chr6_111489258_+	ncRNA_intronic
CAediting_501180	chr6_111489262_+	ncRNA_intronic
CAediting_501181	chr6_111489267_+	ncRNA_intronic
CAediting_501182	chr6_111489270_+	ncRNA_intronic
CAediting_501183	chr6_111489273_+	ncRNA_intronic
CAediting_501184	chr6_111489278_+	ncRNA_intronic
CAediting_501185	chr6_111489279_+	ncRNA_intronic
CAediting_501186	chr6_111489449_+	ncRNA_intronic
CAediting_501187	chr6_111489455_+	ncRNA_intronic
CAediting_501188	chr6_111489456_+	ncRNA_intronic
CAediting_501189	chr6_111489461_+	ncRNA_intronic
CAediting_501190	chr6_111489476_+	ncRNA_intronic
CAediting_501191	chr6_111489501_+	ncRNA_intronic
CAediting_501192	chr6_111489509_+	ncRNA_intronic
CAediting_501193	chr6_111489510_+	ncRNA_intronic
CAediting_501194	chr6_111489512_+	ncRNA_intronic
CAediting_501195	chr6_111489515_+	ncRNA_intronic
CAediting_501196	chr6_111489580_+	ncRNA_intronic
CAediting_501197	chr6_111489639_+	ncRNA_intronic
CAediting_501198	chr6_111489640_+	ncRNA_intronic
CAediting_501199	chr6_111491000_+	ncRNA_exonic
CAediting_501200	chr6_111491060_+	ncRNA_exonic
CAediting_501201	chr6_111491187_+	ncRNA_exonic
CAediting_501202	chr6_111491194_+	ncRNA_exonic
CAediting_501203	chr6_111491197_+	ncRNA_exonic
CAediting_501204	chr6_111491198_+	ncRNA_exonic
CAediting_501205	chr6_111491223_+	ncRNA_exonic
CAediting_501206	chr6_111491302_+	ncRNA_exonic
CAediting_501207	chr6_111491367_+	ncRNA_exonic
CAediting_501208	chr6_111491826_+	ncRNA_exonic
CAediting_501209	chr6_111492506_+	ncRNA_exonic
CAediting_501210	chr6_111492514_+	ncRNA_exonic
CAediting_501211	chr6_111492531_+	ncRNA_exonic
CAediting_501212	chr6_111492536_+	ncRNA_exonic
CAediting_501213	chr6_111492537_+	ncRNA_exonic
CAediting_501214	chr6_111492563_+	ncRNA_exonic
CAediting_501215	chr6_111492586_+	ncRNA_exonic
CAediting_501216	chr6_111492622_+	ncRNA_exonic
CAediting_501217	chr6_111492648_+	ncRNA_exonic
CAediting_501218	chr6_111492675_+	ncRNA_exonic
CAediting_501219	chr6_111492678_+	ncRNA_exonic
CAediting_501220	chr6_111492684_+	ncRNA_exonic
CAediting_501221	chr6_111492749_+	ncRNA_exonic
CAediting_501222	chr6_111492754_+	ncRNA_exonic
CAediting_501223	chr6_111493955_+	ncRNA_intronic
CAediting_501224	chr6_111494454_+	ncRNA_intronic
CAediting_501225	chr6_111494837_+	ncRNA_intronic
CAediting_501226	chr6_111497098_+	ncRNA_intronic
CAediting_501227	chr6_111497139_+	ncRNA_intronic
CAediting_501228	chr6_111497171_+	ncRNA_intronic
CAediting_501229	chr6_111497281_+	ncRNA_intronic
CAediting_501230	chr6_111501399_+	ncRNA_intronic
CAediting_501231	chr6_111501606_+	ncRNA_intronic
CAediting_501232	chr6_111502835_+	ncRNA_intronic
CAediting_501233	chr6_111502836_+	ncRNA_intronic
CAediting_501234	chr6_111504869_+	ncRNA_intronic
CAediting_501235	chr6_111504883_+	ncRNA_intronic
CAediting_501236	chr6_111504950_+	ncRNA_intronic
CAediting_501237	chr6_111508146_+	ncRNA_intronic
CAediting_501238	chr6_111508330_+	ncRNA_intronic
CAediting_501239	chr6_111508652_+	ncRNA_intronic
CAediting_501240	chr6_111508668_+	ncRNA_intronic
CAediting_501241	chr6_111508693_+	ncRNA_intronic
CAediting_501242	chr6_111508703_+	ncRNA_intronic
CAediting_501243	chr6_111508715_+	ncRNA_intronic
CAediting_501244	chr6_111508724_+	ncRNA_intronic
CAediting_501245	chr6_111512388_+	ncRNA_intronic
CAediting_501246	chr6_111513229_+	ncRNA_intronic
CAediting_501247	chr6_111513253_+	ncRNA_intronic
CAediting_501248	chr6_111513260_+	ncRNA_intronic
CAediting_501249	chr6_111513272_+	ncRNA_intronic
CAediting_501250	chr6_111513369_+	ncRNA_intronic
CAediting_501251	chr6_111513420_+	ncRNA_intronic
CAediting_501252	chr6_111514706_+	ncRNA_intronic
CAediting_501253	chr6_111514710_+	ncRNA_intronic
CAediting_501254	chr6_111514718_+	ncRNA_intronic
CAediting_501255	chr6_111514742_+	ncRNA_intronic
CAediting_501256	chr6_111514746_+	ncRNA_intronic
CAediting_501257	chr6_111514748_+	ncRNA_intronic
CAediting_501258	chr6_111514751_+	ncRNA_intronic
CAediting_501259	chr6_111514813_+	ncRNA_intronic
CAediting_501260	chr6_111514817_+	ncRNA_intronic
CAediting_501261	chr6_111514833_+	ncRNA_intronic
CAediting_501262	chr6_111514845_+	ncRNA_intronic
CAediting_501263	chr6_111514854_+	ncRNA_intronic
CAediting_501264	chr6_111514874_+	ncRNA_intronic
CAediting_501265	chr6_111515077_+	ncRNA_intronic
CAediting_501266	chr6_111515078_+	ncRNA_intronic
CAediting_501267	chr6_111515085_+	ncRNA_intronic
CAediting_501268	chr6_111515100_+	ncRNA_intronic
CAediting_501269	chr6_111515102_+	ncRNA_intronic
CAediting_501270	chr6_111515103_+	ncRNA_intronic
CAediting_501271	chr6_111515135_+	ncRNA_intronic
CAediting_501272	chr6_111515141_+	ncRNA_intronic
CAediting_501273	chr6_111515147_+	ncRNA_intronic
CAediting_501274	chr6_111515151_+	ncRNA_intronic
CAediting_501275	chr6_111515154_+	ncRNA_intronic
CAediting_501276	chr6_111515168_+	ncRNA_intronic
CAediting_501277	chr6_111515212_+	ncRNA_intronic
CAediting_501278	chr6_111519047_+	ncRNA_intronic
CAediting_501279	chr6_111519117_+	ncRNA_intronic
CAediting_501280	chr6_111519123_+	ncRNA_intronic
CAediting_501281	chr6_111519141_+	ncRNA_intronic
CAediting_501282	chr6_111519149_+	ncRNA_intronic
CAediting_501283	chr6_111519246_+	ncRNA_intronic
CAediting_501284	chr6_111519597_+	ncRNA_intronic
CAediting_501285	chr6_111519682_+	ncRNA_intronic
CAediting_501286	chr6_111519683_+	ncRNA_intronic
CAediting_501287	chr6_111519692_+	ncRNA_intronic
CAediting_501288	chr6_111520537_+	ncRNA_intronic
CAediting_501289	chr6_111520555_+	ncRNA_intronic
CAediting_501290	chr6_111520575_+	ncRNA_intronic
CAediting_501291	chr6_111520665_+	ncRNA_intronic
CAediting_501292	chr6_111520699_+	ncRNA_intronic
CAediting_501293	chr6_111520705_+	ncRNA_intronic
CAediting_501294	chr6_111520753_+	ncRNA_intronic
CAediting_501295	chr6_111520754_+	ncRNA_intronic
CAediting_501296	chr6_111523185_+	ncRNA_intronic
CAediting_501297	chr6_111526746_+	ncRNA_intronic
CAediting_501298	chr6_111529681_+	ncRNA_intronic
CAediting_501299	chr6_111529695_+	ncRNA_intronic
CAediting_501300	chr6_111529698_+	ncRNA_intronic
CAediting_501301	chr6_111529705_+	ncRNA_intronic
CAediting_501302	chr6_111529708_+	ncRNA_intronic
CAediting_501303	chr6_111529781_+	ncRNA_intronic
CAediting_501304	chr6_111529782_+	ncRNA_intronic
CAediting_501305	chr6_111529786_+	ncRNA_intronic
CAediting_501306	chr6_111535670_+	ncRNA_intronic
CAediting_501307	chr6_111535860_+	ncRNA_intronic
CAediting_501308	chr6_111535861_+	ncRNA_intronic
CAediting_501309	chr6_111535878_+	ncRNA_intronic
CAediting_501310	chr6_111535904_+	ncRNA_intronic
CAediting_501311	chr6_111535927_+	ncRNA_intronic
CAediting_501312	chr6_111535928_+	ncRNA_intronic
CAediting_501313	chr6_111535970_+	ncRNA_intronic
CAediting_501314	chr6_111535971_+	ncRNA_intronic
CAediting_501315	chr6_111535975_+	ncRNA_intronic
CAediting_501316	chr6_111535988_+	ncRNA_intronic
CAediting_501317	chr6_111535995_+	ncRNA_intronic
CAediting_501318	chr6_111536001_+	ncRNA_intronic
CAediting_501319	chr6_111536049_+	ncRNA_intronic
CAediting_501320	chr6_111536053_+	ncRNA_intronic
CAediting_501321	chr6_111536066_+	ncRNA_intronic
CAediting_501322	chr6_111536103_+	ncRNA_intronic
CAediting_501323	chr6_111536507_+	ncRNA_intronic
CAediting_501324	chr6_111536531_+	ncRNA_intronic
CAediting_501325	chr6_111536610_+	ncRNA_intronic
CAediting_501326	chr6_111536656_+	ncRNA_intronic
CAediting_501327	chr6_111536673_+	ncRNA_intronic
CAediting_501328	chr6_111546257_+	ncRNA_intronic
CAediting_501329	chr6_111546258_+	ncRNA_intronic
CAediting_501330	chr6_111546301_+	ncRNA_intronic
CAediting_501331	chr6_111547298_+	ncRNA_intronic
CAediting_501332	chr6_111553540_+	ncRNA_intronic
CAediting_501333	chr6_111553565_+	ncRNA_intronic
CAediting_501334	chr6_111553575_+	ncRNA_intronic
CAediting_501335	chr6_111553578_+	ncRNA_intronic
CAediting_501336	chr6_111553606_+	ncRNA_intronic
CAediting_501337	chr6_111553607_+	ncRNA_intronic
CAediting_501338	chr6_111553846_+	ncRNA_intronic
CAediting_501339	chr6_111553850_+	ncRNA_intronic
CAediting_501340	chr6_111553851_+	ncRNA_intronic
CAediting_501341	chr6_111554030_+	ncRNA_intronic
CAediting_501342	chr6_111554031_+	ncRNA_intronic
CAediting_501343	chr6_111554057_+	ncRNA_intronic
CAediting_501344	chr6_111554070_+	ncRNA_intronic
CAediting_501345	chr6_111554339_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_501157	chr6_111486067_+	SINE	Alu	AluSg
CAediting_501158	chr6_111486181_+	SINE	Alu	AluSg
CAediting_501159	chr6_111486241_+	SINE	Alu	AluSg
CAediting_501160	chr6_111486807_+	SINE	Alu	FLAM_A
CAediting_501161	chr6_111486827_+	SINE	Alu	FLAM_A
CAediting_501162	chr6_111486846_+	SINE	Alu	FLAM_A
CAediting_501163	chr6_111488008_+	DNA	hAT-Tip100	MER45B
CAediting_501164	chr6_111488037_+	DNA	hAT-Tip100	MER45B
CAediting_501165	chr6_111488062_+	DNA	hAT-Tip100	MER45B
CAediting_501166	chr6_111488063_+	DNA	hAT-Tip100	MER45B
CAediting_501167	chr6_111488080_+	DNA	hAT-Tip100	MER45B
CAediting_501168	chr6_111488096_+	DNA	hAT-Tip100	MER45B
CAediting_501169	chr6_111489054_+	SINE	Alu	AluJb
CAediting_501170	chr6_111489073_+	SINE	Alu	AluJb
CAediting_501171	chr6_111489216_+	DNA	hAT-Tip100	MER45B
CAediting_501172	chr6_111489236_+	DNA	hAT-Tip100	MER45B
CAediting_501173	chr6_111489243_+	DNA	hAT-Tip100	MER45B
CAediting_501174	chr6_111489245_+	DNA	hAT-Tip100	MER45B
CAediting_501175	chr6_111489246_+	DNA	hAT-Tip100	MER45B
CAediting_501176	chr6_111489251_+	DNA	hAT-Tip100	MER45B
CAediting_501177	chr6_111489252_+	DNA	hAT-Tip100	MER45B
CAediting_501178	chr6_111489253_+	DNA	hAT-Tip100	MER45B
CAediting_501179	chr6_111489258_+	DNA	hAT-Tip100	MER45B
CAediting_501180	chr6_111489262_+	DNA	hAT-Tip100	MER45B
CAediting_501181	chr6_111489267_+	DNA	hAT-Tip100	MER45B
CAediting_501182	chr6_111489270_+	DNA	hAT-Tip100	MER45B
CAediting_501183	chr6_111489273_+	DNA	hAT-Tip100	MER45B
CAediting_501184	chr6_111489278_+	DNA	hAT-Tip100	MER45B
CAediting_501185	chr6_111489279_+	DNA	hAT-Tip100	MER45B
CAediting_501186	chr6_111489449_+	SINE	Alu	AluJb
CAediting_501187	chr6_111489455_+	SINE	Alu	AluJb
CAediting_501188	chr6_111489456_+	SINE	Alu	AluJb
CAediting_501189	chr6_111489461_+	SINE	Alu	AluJb
CAediting_501190	chr6_111489476_+	SINE	Alu	AluJb
CAediting_501191	chr6_111489501_+	SINE	Alu	AluJb
CAediting_501192	chr6_111489509_+	SINE	Alu	AluJb
CAediting_501193	chr6_111489510_+	SINE	Alu	AluJb
CAediting_501194	chr6_111489512_+	SINE	Alu	AluJb
CAediting_501195	chr6_111489515_+	SINE	Alu	AluJb
CAediting_501196	chr6_111489580_+	SINE	Alu	AluJb
CAediting_501197	chr6_111489639_+	SINE	Alu	AluJb
CAediting_501198	chr6_111489640_+	SINE	Alu	AluJb
CAediting_501199	chr6_111491000_+	SINE	Alu	AluJo
CAediting_501200	chr6_111491060_+	SINE	Alu	AluJo
CAediting_501201	chr6_111491187_+	SINE	Alu	AluJb
CAediting_501202	chr6_111491194_+	SINE	Alu	AluJb
CAediting_501203	chr6_111491197_+	SINE	Alu	AluJb
CAediting_501204	chr6_111491198_+	SINE	Alu	AluJb
CAediting_501205	chr6_111491223_+	SINE	Alu	AluJb
CAediting_501206	chr6_111491302_+	SINE	Alu	AluJb
CAediting_501207	chr6_111491367_+	SINE	Alu	AluJb
CAediting_501209	chr6_111492506_+	SINE	Alu	AluJo
CAediting_501210	chr6_111492514_+	SINE	Alu	AluJo
CAediting_501211	chr6_111492531_+	SINE	Alu	AluJo
CAediting_501212	chr6_111492536_+	SINE	Alu	AluJo
CAediting_501213	chr6_111492537_+	SINE	Alu	AluJo
CAediting_501214	chr6_111492563_+	SINE	Alu	AluJo
CAediting_501215	chr6_111492586_+	SINE	Alu	AluJo
CAediting_501216	chr6_111492622_+	SINE	Alu	AluJo
CAediting_501217	chr6_111492648_+	SINE	Alu	AluJo
CAediting_501218	chr6_111492675_+	SINE	Alu	AluJo
CAediting_501219	chr6_111492678_+	SINE	Alu	AluJo
CAediting_501220	chr6_111492684_+	SINE	Alu	AluJo
CAediting_501221	chr6_111492749_+	SINE	Alu	AluJo
CAediting_501222	chr6_111492754_+	SINE	Alu	AluJo
CAediting_501223	chr6_111493955_+	SINE	Alu	AluSx1
CAediting_501224	chr6_111494454_+	SINE	Alu	FRAM
CAediting_501225	chr6_111494837_+	SINE	Alu	AluJb
CAediting_501226	chr6_111497098_+	SINE	Alu	AluJr
CAediting_501227	chr6_111497139_+	SINE	Alu	AluJr
CAediting_501228	chr6_111497171_+	SINE	Alu	AluJr
CAediting_501229	chr6_111497281_+	SINE	Alu	AluJr
CAediting_501230	chr6_111501399_+	SINE	Alu	AluJr
CAediting_501231	chr6_111501606_+	SINE	Alu	AluJr
CAediting_501232	chr6_111502835_+	SINE	Alu	AluSz
CAediting_501233	chr6_111502836_+	SINE	Alu	AluSz
CAediting_501234	chr6_111504869_+	SINE	Alu	AluSx1
CAediting_501235	chr6_111504883_+	SINE	Alu	AluSx1
CAediting_501236	chr6_111504950_+	SINE	Alu	AluSx1
CAediting_501237	chr6_111508146_+	SINE	Alu	AluSp
CAediting_501238	chr6_111508330_+	SINE	Alu	AluSp
CAediting_501239	chr6_111508652_+	SINE	Alu	AluJr4
CAediting_501240	chr6_111508668_+	SINE	Alu	AluJr4
CAediting_501241	chr6_111508693_+	SINE	Alu	AluJr4
CAediting_501242	chr6_111508703_+	SINE	Alu	AluJr4
CAediting_501243	chr6_111508715_+	SINE	Alu	AluJr4
CAediting_501244	chr6_111508724_+	SINE	Alu	AluJr4
CAediting_501245	chr6_111512388_+	SINE	Alu	AluSx
CAediting_501246	chr6_111513229_+	SINE	Alu	AluJb
CAediting_501247	chr6_111513253_+	SINE	Alu	AluJb
CAediting_501248	chr6_111513260_+	SINE	Alu	AluJb
CAediting_501249	chr6_111513272_+	SINE	Alu	AluJb
CAediting_501250	chr6_111513369_+	SINE	Alu	AluJb
CAediting_501251	chr6_111513420_+	SINE	Alu	AluJb
CAediting_501252	chr6_111514706_+	SINE	Alu	AluSx1
CAediting_501253	chr6_111514710_+	SINE	Alu	AluSx1
CAediting_501254	chr6_111514718_+	SINE	Alu	AluSx1
CAediting_501255	chr6_111514742_+	SINE	Alu	AluSx1
CAediting_501256	chr6_111514746_+	SINE	Alu	AluSx1
CAediting_501257	chr6_111514748_+	SINE	Alu	AluSx1
CAediting_501258	chr6_111514751_+	SINE	Alu	AluSx1
CAediting_501259	chr6_111514813_+	SINE	Alu	AluSx1
CAediting_501260	chr6_111514817_+	SINE	Alu	AluSx1
CAediting_501261	chr6_111514833_+	SINE	Alu	AluSx1
CAediting_501262	chr6_111514845_+	SINE	Alu	AluSx1
CAediting_501263	chr6_111514854_+	SINE	Alu	AluSx1
CAediting_501264	chr6_111514874_+	SINE	Alu	AluSx1
CAediting_501265	chr6_111515077_+	SINE	Alu	AluSc8
CAediting_501266	chr6_111515078_+	SINE	Alu	AluSc8
CAediting_501267	chr6_111515085_+	SINE	Alu	AluSc8
CAediting_501268	chr6_111515100_+	SINE	Alu	AluSc8
CAediting_501269	chr6_111515102_+	SINE	Alu	AluSc8
CAediting_501270	chr6_111515103_+	SINE	Alu	AluSc8
CAediting_501271	chr6_111515135_+	SINE	Alu	AluSc8
CAediting_501272	chr6_111515141_+	SINE	Alu	AluSc8
CAediting_501273	chr6_111515147_+	SINE	Alu	AluSc8
CAediting_501274	chr6_111515151_+	SINE	Alu	AluSc8
CAediting_501275	chr6_111515154_+	SINE	Alu	AluSc8
CAediting_501276	chr6_111515168_+	SINE	Alu	AluSc8
CAediting_501277	chr6_111515212_+	SINE	Alu	AluSc8
CAediting_501278	chr6_111519047_+	SINE	Alu	AluSz6
CAediting_501279	chr6_111519117_+	SINE	Alu	AluSz6
CAediting_501280	chr6_111519123_+	SINE	Alu	AluSz6
CAediting_501281	chr6_111519141_+	SINE	Alu	AluSz6
CAediting_501282	chr6_111519149_+	SINE	Alu	AluSz6
CAediting_501283	chr6_111519246_+	SINE	Alu	AluSz6
CAediting_501284	chr6_111519597_+	SINE	Alu	AluJr
CAediting_501285	chr6_111519682_+	SINE	Alu	AluJr
CAediting_501286	chr6_111519683_+	SINE	Alu	AluJr
CAediting_501287	chr6_111519692_+	SINE	Alu	AluJr
CAediting_501288	chr6_111520537_+	SINE	Alu	AluJo
CAediting_501289	chr6_111520555_+	SINE	Alu	AluJo
CAediting_501290	chr6_111520575_+	SINE	Alu	AluJo
CAediting_501291	chr6_111520665_+	SINE	Alu	AluJo
CAediting_501292	chr6_111520699_+	SINE	Alu	AluJo
CAediting_501293	chr6_111520705_+	SINE	Alu	AluJo
CAediting_501294	chr6_111520753_+	SINE	Alu	AluJo
CAediting_501295	chr6_111520754_+	SINE	Alu	AluJo
CAediting_501296	chr6_111523185_+	SINE	Alu	AluSc
CAediting_501297	chr6_111526746_+	SINE	Alu	AluY
CAediting_501298	chr6_111529681_+	SINE	Alu	AluSz6
CAediting_501299	chr6_111529695_+	SINE	Alu	AluSz6
CAediting_501300	chr6_111529698_+	SINE	Alu	AluSz6
CAediting_501301	chr6_111529705_+	SINE	Alu	AluSz6
CAediting_501302	chr6_111529708_+	SINE	Alu	AluSz6
CAediting_501303	chr6_111529781_+	SINE	Alu	AluSz6
CAediting_501304	chr6_111529782_+	SINE	Alu	AluSz6
CAediting_501305	chr6_111529786_+	SINE	Alu	AluSz6
CAediting_501306	chr6_111535670_+	DNA	hAT-Charlie	MER5B
CAediting_501307	chr6_111535860_+	SINE	Alu	AluYj4
CAediting_501308	chr6_111535861_+	SINE	Alu	AluYj4
CAediting_501309	chr6_111535878_+	SINE	Alu	AluYj4
CAediting_501310	chr6_111535904_+	SINE	Alu	AluYj4
CAediting_501311	chr6_111535927_+	SINE	Alu	AluYj4
CAediting_501312	chr6_111535928_+	SINE	Alu	AluYj4
CAediting_501313	chr6_111535970_+	SINE	Alu	AluYj4
CAediting_501314	chr6_111535971_+	SINE	Alu	AluYj4
CAediting_501315	chr6_111535975_+	SINE	Alu	AluYj4
CAediting_501316	chr6_111535988_+	SINE	Alu	AluYj4
CAediting_501317	chr6_111535995_+	SINE	Alu	AluYj4
CAediting_501318	chr6_111536001_+	SINE	Alu	AluYj4
CAediting_501319	chr6_111536049_+	SINE	Alu	AluYj4
CAediting_501320	chr6_111536053_+	SINE	Alu	AluYj4
CAediting_501321	chr6_111536066_+	SINE	Alu	AluYj4
CAediting_501322	chr6_111536103_+	SINE	Alu	AluYj4
CAediting_501323	chr6_111536507_+	SINE	Alu	AluJb
CAediting_501324	chr6_111536531_+	SINE	Alu	AluJb
CAediting_501325	chr6_111536610_+	SINE	Alu	AluJb
CAediting_501326	chr6_111536656_+	SINE	Alu	AluJb
CAediting_501327	chr6_111536673_+	SINE	Alu	AluJb
CAediting_501328	chr6_111546257_+	SINE	Alu	AluJb
CAediting_501329	chr6_111546258_+	SINE	Alu	AluJb
CAediting_501330	chr6_111546301_+	SINE	Alu	AluJb
CAediting_501331	chr6_111547298_+	SINE	Alu	AluSq2
CAediting_501332	chr6_111553540_+	SINE	Alu	AluSx1
CAediting_501333	chr6_111553565_+	SINE	Alu	AluSx1
CAediting_501334	chr6_111553575_+	SINE	Alu	AluSx1
CAediting_501335	chr6_111553578_+	SINE	Alu	AluSx1
CAediting_501336	chr6_111553606_+	SINE	Alu	AluSx1
CAediting_501337	chr6_111553607_+	SINE	Alu	AluSx1
CAediting_501338	chr6_111553846_+	SINE	Alu	AluJb
CAediting_501339	chr6_111553850_+	SINE	Alu	AluJb
CAediting_501340	chr6_111553851_+	SINE	Alu	AluJb
CAediting_501341	chr6_111554030_+	SINE	Alu	AluSx
CAediting_501342	chr6_111554031_+	SINE	Alu	AluSx
CAediting_501343	chr6_111554057_+	SINE	Alu	AluSx
CAediting_501344	chr6_111554070_+	SINE	Alu	AluSx
CAediting_501345	chr6_111554339_+	SINE	Alu	AluJb

Top

RNA A-to-I editing events in the alternative splicing sites for TRAF3IP2-AS1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000231889.6.TRAF3IP2-AS1.

Correlation between RNA A-to-I editing and PSI for ENSG00000231889.6.TRAF3IP2-AS1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRAF3IP2-AS1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for TRAF3IP2-AS1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for TRAF3IP2-AS1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_501199	chr6_111491000_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-196a-3p	111490999	111491005	7mer-m8	111490982	111491006	145	-14.16
CAediting_501200	chr6_111491060_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3189-3p	111491055	111491061	7mer-m8	111491043	111491062	149	-25.49
CAediting_501200	chr6_111491060_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6813-3p	111491056	111491062	7mer-m8	111491043	111491063	140	-11.59
CAediting_501201	chr6_111491187_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3940-3p	111491185	111491191	7mer-m8	111491171	111491192	140	-16.03
CAediting_501202	chr6_111491194_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-1199-5p	111491188	111491194	7mer-m8	111491176	111491195	152	-24.73
CAediting_501202	chr6_111491194_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6751-3p	111491188	111491194	7mer-m8	111491175	111491195	145	-14.78
CAediting_501204	chr6_111491198_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-1288-3p	111491195	111491201	7mer-m8	111491182	111491202	155	-23.57
CAediting_501204	chr6_111491198_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3169	111491196	111491202	7mer-m8	111491178	111491203	148	-20.15
CAediting_501205	chr6_111491223_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-4691-3p	111491221	111491227	7mer-m8	111491202	111491228	156	-30.33
CAediting_501206	chr6_111491302_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3940-3p	111491300	111491306	7mer-m8	111491286	111491307	140	-19.38
CAediting_501206	chr6_111491302_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-7112-5p	111491297	111491302	6mer	111491282	111491303	148	-26.83
CAediting_501207	chr6_111491367_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-106a-3p	111491364	111491369	6mer	111491349	111491370	141	-21.13
CAediting_501208	chr6_111491826_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-520d-5p	111491822	111491828	7mer-m8	111491810	111491829	140	-8.72
CAediting_501208	chr6_111491826_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-524-5p	111491822	111491828	7mer-m8	111491808	111491829	140	-8.58
CAediting_501208	chr6_111491826_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-5689	111491825	111491832	8mer-1a	111491808	111491832	142	-11.3
CAediting_501210	chr6_111492514_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-513a-5p	111492509	111492515	7mer-m8	111492499	111492516	152	-17.32
CAediting_501210	chr6_111492514_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-638	111492514	111492520	7mer-1a	111492496	111492520	155	-35.76
CAediting_501211	chr6_111492531_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-4691-5p	111492527	111492533	7mer-m8	111492511	111492534	146	-23.08
CAediting_501211	chr6_111492531_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-519d-5p	111492525	111492531	7mer-m8	111492508	111492532	155	-19.42
CAediting_501211	chr6_111492531_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6792-3p	111492527	111492533	7mer-m8	111492513	111492534	147	-15.83
CAediting_501214	chr6_111492563_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-326	111492557	111492563	7mer-m8	111492545	111492564	147	-20.52
CAediting_501214	chr6_111492563_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-330-5p	111492557	111492563	7mer-m8	111492543	111492564	152	-20.81
CAediting_501217	chr6_111492648_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-140-3p	111492644	111492650	7mer-m8	111492628	111492651	161	-27.36
CAediting_501209	chr6_111492506_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3622a-5p	111492505	111492511	7mer-m8	111492490	111492512	148	-27.37
CAediting_501213	chr6_111492537_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3620-3p	111492535	111492542	8mer-1a	111492519	111492542	144	-17.71
CAediting_501213	chr6_111492537_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3663-5p	111492531	111492537	7mer-m8	111492517	111492538	153	-23.77
CAediting_501216	chr6_111492622_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3190-5p	111492621	111492627	7mer-m8	111492609	111492628	143	-16.24
CAediting_501216	chr6_111492622_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-548s	111492620	111492626	7mer-m8	111492605	111492627	149	-10.72
CAediting_501221	chr6_111492749_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3605-3p	111492746	111492752	7mer-m8	111492733	111492753	148	-16.95
CAediting_501219	chr6_111492678_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6752-3p	111492672	111492678	7mer-m8	111492660	111492679	152	-24.77
CAediting_501219	chr6_111492678_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6801-3p	111492673	111492679	7mer-m8	111492661	111492680	148	-24.4
CAediting_501219	chr6_111492678_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6810-3p	111492673	111492679	7mer-m8	111492658	111492680	146	-24.6

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_501201	chr6_111491187_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-3192-5p	111491183	111491188	6mer	111491164	111491189	148	-27.8
CAediting_501208	chr6_111491826_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-340-5p	111491822	111491828	7mer-m8	111491806	111491829	153	-13.43
CAediting_501206	chr6_111491302_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-5189-5p	111491297	111491303	7mer-m8	111491283	111491304	144	-17.07
CAediting_501206	chr6_111491302_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-612	111491297	111491303	7mer-m8	111491281	111491304	153	-24.36
CAediting_501206	chr6_111491302_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-661	111491299	111491305	7mer-m8	111491282	111491306	142	-16.82
CAediting_501218	chr6_111492675_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6747-3p	111492671	111492678	8mer-1a	111492656	111492678	149	-23.42
CAediting_501209	chr6_111492506_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6807-5p	111492500	111492506	7mer-m8	111492486	111492507	140	-13.98
CAediting_501212	chr6_111492536_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6813-3p	111492534	111492540	7mer-m8	111492521	111492541	142	-17.05
CAediting_501213	chr6_111492537_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-6813-3p	111492534	111492540	7mer-m8	111492521	111492541	142	-17.05
CAediting_501210	chr6_111492514_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-7151-3p	111492508	111492515	8mer-1a	111492499	111492515	146	-17.62
CAediting_501217	chr6_111492648_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-7151-3p	111492642	111492648	7mer-m8	111492629	111492649	142	-16.48
CAediting_501206	chr6_111491302_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-939-3p	111491298	111491304	7mer-m8	111491285	111491305	140	-15.63

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000231889.6	ENST00000420651.2	hsa-miR-1304-3p	111503351	111503357	7mer-m8	111503337	111503358	144	-18.6
CAediting_980496	chr14_31014685_-	ENSG00000231889.6	ENST00000532226.1	hsa-miR-624-3p	111492757	111492763	7mer-m8	111492744	111492764	156	-14.33
CAediting_688080	chr9_63819626_+	ENSG00000231889.6	ENST00000532226.1	hsa-miR-4477b	111491500	111491506	7mer-m8	111491483	111491507	150	-14.56
CAediting_846604	chr11_93733708_-	ENSG00000231889.6	ENST00000440001.2	hsa-miR-1304-3p	111503351	111503357	7mer-m8	111503337	111503358	144	-18.6
CAediting_846604	chr11_93733708_-	ENSG00000231889.6	ENST00000525151.4	hsa-miR-1304-3p	111503351	111503357	7mer-m8	111503337	111503358	144	-18.6
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000449449.5	hsa-miR-548aa	111576459	111576465	7mer-m8	111576442	111576466	150	-16.82
CAediting_1229415	chr17_67471547_+	ENSG00000231889.6	ENST00000449449.5	hsa-miR-548aa	111576633	111576639	7mer-m8	111576615	111576640	154	-17.42
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000607066.1	hsa-miR-548aa	111576459	111576465	7mer-m8	111576442	111576466	150	-16.82
CAediting_86358	chr1_109598906_+	ENSG00000231889.6	ENST00000420651.2	hsa-miR-197-5p	111503374	111503380	7mer-m8	111503359	111503381	141	-14.17
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000442928.5	hsa-miR-548aa	111576459	111576465	7mer-m8	111576442	111576466	150	-16.82
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000606892.1	hsa-miR-548aa	111576459	111576465	7mer-m8	111576442	111576466	150	-16.82
CAediting_1229415	chr17_67471547_+	ENSG00000231889.6	ENST00000606892.1	hsa-miR-548aa	111576633	111576639	7mer-m8	111576615	111576640	154	-17.42
CAediting_1054808	chr15_66496985_-	ENSG00000231889.6	ENST00000532353.1	hsa-miR-4512	111598143	111598150	8mer-1a	111598126	111598150	157	-20.68
CAediting_117844	chr1_162342605_+	ENSG00000231889.6	ENST00000532353.1	hsa-miR-556-3p	111598273	111598280	8mer-1a	111598258	111598280	152	-11.48
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000456352.2	hsa-miR-548aa	111576459	111576465	7mer-m8	111576442	111576466	150	-16.82
CAediting_1229415	chr17_67471547_+	ENSG00000231889.6	ENST00000456352.2	hsa-miR-548aa	111576633	111576639	7mer-m8	111576615	111576640	154	-17.42
CAediting_396018	chr5_1062918_-	ENSG00000231889.6	ENST00000532226.1	hsa-miR-4635	111491391	111491397	7mer-m8	111491378	111491398	142	-15.12
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000440001.2	hsa-miR-548aa	111484098	111484104	7mer-m8	111484081	111484105	140	-7.85
CAediting_86358	chr1_109598906_+	ENSG00000231889.6	ENST00000440001.2	hsa-miR-197-5p	111503374	111503380	7mer-m8	111503359	111503381	141	-14.17
CAediting_580943	chr7_100356700_+	ENSG00000231889.6	ENST00000440001.2	hsa-miR-6840-3p	111484124	111484130	7mer-m8	111484108	111484131	167	-38.86
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000438298.5	hsa-miR-548aa	111576459	111576465	7mer-m8	111576442	111576466	150	-16.82
CAediting_1229415	chr17_67471547_+	ENSG00000231889.6	ENST00000438298.5	hsa-miR-548aa	111576633	111576639	7mer-m8	111576615	111576640	154	-17.42
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000440395.1	hsa-miR-548aa	111576459	111576465	7mer-m8	111576442	111576466	150	-16.82
CAediting_86358	chr1_109598906_+	ENSG00000231889.6	ENST00000525151.4	hsa-miR-197-5p	111503374	111503380	7mer-m8	111503359	111503381	141	-14.17
CAediting_580943	chr7_100356700_+	ENSG00000231889.6	ENST00000525151.4	hsa-miR-6840-3p	111484124	111484130	7mer-m8	111483653	111484131	147	-28.05
CAediting_468389	chr6_31355314_-	ENSG00000231889.6	ENST00000440001.2	hsa-miR-6891-5p	111483929	111483935	7mer-m8	111483918	111483936	155	-28.43

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_573001	chr7_92204086_-	ENSG00000231889.6	ENST00000449449.5	hsa-miR-1285-5p	111574659	111574665	7mer-m8	111574644	111574666	148	-15.85
CAediting_573001	chr7_92204086_-	ENSG00000231889.6	ENST00000449449.5	hsa-miR-1285-5p	111576408	111576414	7mer-m8	111576395	111576415	140	-12.81
CAediting_1368054	chr19_46709310_-	ENSG00000231889.6	ENST00000449449.5	hsa-miR-320e	111576528	111576534	7mer-m8	111576517	111576535	142	-15.08
CAediting_573001	chr7_92204086_-	ENSG00000231889.6	ENST00000442928.5	hsa-miR-1285-5p	111574659	111574665	7mer-m8	111574644	111574666	148	-15.85
CAediting_573001	chr7_92204086_-	ENSG00000231889.6	ENST00000442928.5	hsa-miR-1285-5p	111576408	111576414	7mer-m8	111576395	111576415	140	-12.81
CAediting_573001	chr7_92204086_-	ENSG00000231889.6	ENST00000456352.2	hsa-miR-1285-5p	111576408	111576414	7mer-m8	111576395	111576415	140	-12.81
CAediting_1229413	chr17_67471544_+	ENSG00000231889.6	ENST00000440001.2	hsa-miR-548aa	111503479	111503486	8mer-1a	111503459	111503486	149	-16.32
CAediting_573001	chr7_92204086_-	ENSG00000231889.6	ENST00000438298.5	hsa-miR-1285-5p	111574659	111574665	7mer-m8	111574644	111574666	148	-15.85
CAediting_573001	chr7_92204086_-	ENSG00000231889.6	ENST00000438298.5	hsa-miR-1285-5p	111576408	111576414	7mer-m8	111576395	111576415	140	-12.81
CAediting_1368054	chr19_46709310_-	ENSG00000231889.6	ENST00000440395.1	hsa-miR-320e	111576528	111576534	7mer-m8	111576517	111576535	142	-15.08

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for TRAF3IP2-AS1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000532226.1	antisense

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_501199	ENST00000532226.1	chr6_111491000_+	-819.90	-819.00	-834.90
CAediting_501200	ENST00000532226.1	chr6_111491060_+	-819.30	-819.00	-834.90
CAediting_501201	ENST00000532226.1	chr6_111491187_+	-819.00	-819.00	-834.90
CAediting_501202	ENST00000532226.1	chr6_111491194_+	-819.00	-819.00	-834.90
CAediting_501203	ENST00000532226.1	chr6_111491197_+	-823.20	-819.00	-834.90
CAediting_501204	ENST00000532226.1	chr6_111491198_+	-818.80	-819.00	-834.90
CAediting_501205	ENST00000532226.1	chr6_111491223_+	-818.60	-819.00	-834.90
CAediting_501206	ENST00000532226.1	chr6_111491302_+	-818.20	-819.00	-834.90
CAediting_501207	ENST00000532226.1	chr6_111491367_+	-819.00	-819.00	-834.90
CAediting_501208	ENST00000532226.1	chr6_111491826_+	-825.20	-819.00	-834.90
CAediting_501209	ENST00000532226.1	chr6_111492506_+	-815.60	-819.00	-834.90
CAediting_501210	ENST00000532226.1	chr6_111492514_+	-819.10	-819.00	-834.90
CAediting_501211	ENST00000532226.1	chr6_111492531_+	-822.20	-819.00	-834.90
CAediting_501212	ENST00000532226.1	chr6_111492536_+	-818.70	-819.00	-834.90
CAediting_501213	ENST00000532226.1	chr6_111492537_+	-818.70	-819.00	-834.90
CAediting_501214	ENST00000532226.1	chr6_111492563_+	-819.00	-819.00	-834.90
CAediting_501215	ENST00000532226.1	chr6_111492586_+	-819.30	-819.00	-834.90
CAediting_501216	ENST00000532226.1	chr6_111492622_+	-818.70	-819.00	-834.90
CAediting_501217	ENST00000532226.1	chr6_111492648_+	-818.70	-819.00	-834.90
CAediting_501218	ENST00000532226.1	chr6_111492675_+	-823.70	-819.00	-834.90
CAediting_501219	ENST00000532226.1	chr6_111492678_+	-818.10	-819.00	-834.90
CAediting_501220	ENST00000532226.1	chr6_111492684_+	-822.60	-819.00	-834.90
CAediting_501221	ENST00000532226.1	chr6_111492749_+	-818.30	-819.00	-834.90
CAediting_501222	ENST00000532226.1	chr6_111492754_+	-819.10	-819.00	-834.90

Top

Relation with ADAR for TRAF3IP2-AS1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LAML	CAediting_501166	chr6_111488063_+	0.00319656369712836	0.397603782651186	.	.	.	.

Top

Relation with cancer stages for TRAF3IP2-AS1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for TRAF3IP2-AS1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for TRAF3IP2-AS1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for TRAF3IP2-AS1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene