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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SMG1P1 (CAeditome ID:641298) |
Gene summary for SMG1P1 |
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Gene information | Gene symbol | SMG1P1 | Gene ID | 641298 |
Gene name | SMG1 pseudogene 1 | |
Synonyms | - | |
Cytomap | 16p12.2 | |
Type of gene | pseudo | |
Description | PI-3-kinase-related kinase SMG-1SMG1P1, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 1smg-1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene 1 | |
Modification date | 20210518 | |
UniProtAcc | . | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for SMG1P1 |
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CAediting_1101444(22447489, +), CAediting_1101445(22448951, +), CAediting_1101446(22448960, +), CAediting_1101447(22449852, +), CAediting_1101448(22462758, +), CAediting_1101449(22462786, +), CAediting_1101450(22463185, +), CAediting_1101451(22463920, +), CAediting_1101452(22472784, +), CAediting_1101453(22472787, +), CAediting_1101454(22472789, +), CAediting_1101455(22472794, +), CAediting_1101456(22472805, +), CAediting_1101457(22472806, +), CAediting_1101458(22476455, +), CAediting_1101459(22476895, +), CAediting_1101460(22476902, +), CAediting_1101461(22476923, +), CAediting_1101462(22476924, +), CAediting_1101463(22476947, +), CAediting_1101464(22477006, +), CAediting_1101465(22477010, +), CAediting_1101466(22477030, +), CAediting_1101467(22477036, +), CAediting_1101468(22477037, +), CAediting_1101469(22477042, +), CAediting_1101470(22477046, +), CAediting_1101471(22477069, +), CAediting_1101472(22477077, +), CAediting_1101473(22477078, +), CAediting_1101474(22477082, +), CAediting_1101475(22477086, +), CAediting_1101476(22477098, +), CAediting_1101477(22477102, +), CAediting_1101478(22477107, +), CAediting_1101479(22477109, +), CAediting_1101480(22477112, +), CAediting_1101481(22477114, +), CAediting_1101482(22477137, +), CAediting_1101483(22477139, +), CAediting_1101484(22477145, +), CAediting_1101485(22477147, +), CAediting_1101486(22477160, +), CAediting_1101487(22477164, +), CAediting_1101488(22477165, +), CAediting_1101489(22477168, +), CAediting_1101490(22477170, +), CAediting_1101491(22477174, +), CAediting_1101492(22477175, +), CAediting_1101493(22477179, +), CAediting_1101494(22477901, +), CAediting_1101495(22477922, +), CAediting_1101496(22477936, +), CAediting_1101497(22477937, +), CAediting_1101498(22477938, +), CAediting_1101499(22477945, +), CAediting_1101500(22478010, +), |
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RNA editing positional annotations for SMG1P1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1101444 | chr16_22447489_+ | ncRNA_intronic |
CAediting_1101445 | chr16_22448951_+ | ncRNA_intronic |
CAediting_1101446 | chr16_22448960_+ | ncRNA_intronic |
CAediting_1101447 | chr16_22449852_+ | ncRNA_intronic |
CAediting_1101448 | chr16_22462758_+ | ncRNA_intronic |
CAediting_1101449 | chr16_22462786_+ | ncRNA_intronic |
CAediting_1101450 | chr16_22463185_+ | ncRNA_intronic |
CAediting_1101451 | chr16_22463920_+ | ncRNA_intronic |
CAediting_1101452 | chr16_22472784_+ | ncRNA_intronic |
CAediting_1101453 | chr16_22472787_+ | ncRNA_intronic |
CAediting_1101454 | chr16_22472789_+ | ncRNA_intronic |
CAediting_1101455 | chr16_22472794_+ | ncRNA_intronic |
CAediting_1101456 | chr16_22472805_+ | ncRNA_intronic |
CAediting_1101457 | chr16_22472806_+ | ncRNA_intronic |
CAediting_1101458 | chr16_22476455_+ | ncRNA_intronic |
CAediting_1101459 | chr16_22476895_+ | ncRNA_intronic |
CAediting_1101460 | chr16_22476902_+ | ncRNA_intronic |
CAediting_1101461 | chr16_22476923_+ | ncRNA_intronic |
CAediting_1101462 | chr16_22476924_+ | ncRNA_intronic |
CAediting_1101463 | chr16_22476947_+ | ncRNA_intronic |
CAediting_1101464 | chr16_22477006_+ | ncRNA_intronic |
CAediting_1101465 | chr16_22477010_+ | ncRNA_intronic |
CAediting_1101466 | chr16_22477030_+ | ncRNA_intronic |
CAediting_1101467 | chr16_22477036_+ | ncRNA_intronic |
CAediting_1101468 | chr16_22477037_+ | ncRNA_intronic |
CAediting_1101469 | chr16_22477042_+ | ncRNA_intronic |
CAediting_1101470 | chr16_22477046_+ | ncRNA_intronic |
CAediting_1101471 | chr16_22477069_+ | ncRNA_intronic |
CAediting_1101472 | chr16_22477077_+ | ncRNA_intronic |
CAediting_1101473 | chr16_22477078_+ | ncRNA_intronic |
CAediting_1101474 | chr16_22477082_+ | ncRNA_intronic |
CAediting_1101475 | chr16_22477086_+ | ncRNA_intronic |
CAediting_1101476 | chr16_22477098_+ | ncRNA_intronic |
CAediting_1101477 | chr16_22477102_+ | ncRNA_intronic |
CAediting_1101478 | chr16_22477107_+ | ncRNA_intronic |
CAediting_1101479 | chr16_22477109_+ | ncRNA_intronic |
CAediting_1101480 | chr16_22477112_+ | ncRNA_intronic |
CAediting_1101481 | chr16_22477114_+ | ncRNA_intronic |
CAediting_1101482 | chr16_22477137_+ | ncRNA_intronic |
CAediting_1101483 | chr16_22477139_+ | ncRNA_intronic |
CAediting_1101484 | chr16_22477145_+ | ncRNA_intronic |
CAediting_1101485 | chr16_22477147_+ | ncRNA_intronic |
CAediting_1101486 | chr16_22477160_+ | ncRNA_intronic |
CAediting_1101487 | chr16_22477164_+ | ncRNA_intronic |
CAediting_1101488 | chr16_22477165_+ | ncRNA_intronic |
CAediting_1101489 | chr16_22477168_+ | ncRNA_intronic |
CAediting_1101490 | chr16_22477170_+ | ncRNA_intronic |
CAediting_1101491 | chr16_22477174_+ | ncRNA_intronic |
CAediting_1101492 | chr16_22477175_+ | ncRNA_intronic |
CAediting_1101493 | chr16_22477179_+ | ncRNA_intronic |
CAediting_1101494 | chr16_22477901_+ | ncRNA_intronic |
CAediting_1101495 | chr16_22477922_+ | ncRNA_intronic |
CAediting_1101496 | chr16_22477936_+ | ncRNA_intronic |
CAediting_1101497 | chr16_22477937_+ | ncRNA_intronic |
CAediting_1101498 | chr16_22477938_+ | ncRNA_intronic |
CAediting_1101499 | chr16_22477945_+ | ncRNA_intronic |
CAediting_1101500 | chr16_22478010_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1101444 | chr16_22447489_+ | SINE | Alu | AluYm1 |
CAediting_1101445 | chr16_22448951_+ | SINE | Alu | AluJb |
CAediting_1101446 | chr16_22448960_+ | SINE | Alu | AluJb |
CAediting_1101447 | chr16_22449852_+ | SINE | Alu | AluSx1 |
CAediting_1101448 | chr16_22462758_+ | SINE | Alu | AluSc |
CAediting_1101449 | chr16_22462786_+ | SINE | Alu | AluSc |
CAediting_1101450 | chr16_22463185_+ | SINE | Alu | AluSz |
CAediting_1101451 | chr16_22463920_+ | SINE | Alu | AluJb |
CAediting_1101452 | chr16_22472784_+ | SINE | Alu | AluJr |
CAediting_1101453 | chr16_22472787_+ | SINE | Alu | AluJr |
CAediting_1101454 | chr16_22472789_+ | SINE | Alu | AluJr |
CAediting_1101455 | chr16_22472794_+ | SINE | Alu | AluJr |
CAediting_1101456 | chr16_22472805_+ | SINE | Alu | AluJr |
CAediting_1101457 | chr16_22472806_+ | SINE | Alu | AluJr |
CAediting_1101458 | chr16_22476455_+ | SINE | Alu | AluSx1 |
CAediting_1101459 | chr16_22476895_+ | SINE | Alu | AluSx |
CAediting_1101460 | chr16_22476902_+ | SINE | Alu | AluSx |
CAediting_1101461 | chr16_22476923_+ | SINE | Alu | AluSx |
CAediting_1101462 | chr16_22476924_+ | SINE | Alu | AluSx |
CAediting_1101463 | chr16_22476947_+ | SINE | Alu | AluSx |
CAediting_1101464 | chr16_22477006_+ | SINE | Alu | AluSx |
CAediting_1101465 | chr16_22477010_+ | SINE | Alu | AluSx |
CAediting_1101466 | chr16_22477030_+ | SINE | Alu | AluSx |
CAediting_1101467 | chr16_22477036_+ | SINE | Alu | AluSx |
CAediting_1101468 | chr16_22477037_+ | SINE | Alu | AluSx |
CAediting_1101469 | chr16_22477042_+ | SINE | Alu | AluSx |
CAediting_1101470 | chr16_22477046_+ | SINE | Alu | AluSx |
CAediting_1101471 | chr16_22477069_+ | SINE | Alu | AluSx |
CAediting_1101472 | chr16_22477077_+ | SINE | Alu | AluSx |
CAediting_1101473 | chr16_22477078_+ | SINE | Alu | AluSx |
CAediting_1101474 | chr16_22477082_+ | SINE | Alu | AluSx |
CAediting_1101475 | chr16_22477086_+ | SINE | Alu | AluSx |
CAediting_1101476 | chr16_22477098_+ | SINE | Alu | AluSx |
CAediting_1101477 | chr16_22477102_+ | SINE | Alu | AluSx |
CAediting_1101478 | chr16_22477107_+ | SINE | Alu | AluSx |
CAediting_1101479 | chr16_22477109_+ | SINE | Alu | AluSx |
CAediting_1101480 | chr16_22477112_+ | SINE | Alu | AluSx |
CAediting_1101481 | chr16_22477114_+ | SINE | Alu | AluSx |
CAediting_1101482 | chr16_22477137_+ | SINE | Alu | AluSx |
CAediting_1101483 | chr16_22477139_+ | SINE | Alu | AluSx |
CAediting_1101484 | chr16_22477145_+ | SINE | Alu | AluSx |
CAediting_1101485 | chr16_22477147_+ | SINE | Alu | AluSx |
CAediting_1101486 | chr16_22477160_+ | SINE | Alu | AluSx |
CAediting_1101487 | chr16_22477164_+ | SINE | Alu | AluSx |
CAediting_1101488 | chr16_22477165_+ | SINE | Alu | AluSx |
CAediting_1101489 | chr16_22477168_+ | SINE | Alu | AluSx |
CAediting_1101490 | chr16_22477170_+ | SINE | Alu | AluSx |
CAediting_1101491 | chr16_22477174_+ | SINE | Alu | AluSx |
CAediting_1101492 | chr16_22477175_+ | SINE | Alu | AluSx |
CAediting_1101493 | chr16_22477179_+ | SINE | Alu | AluSx |
CAediting_1101494 | chr16_22477901_+ | SINE | Alu | AluSx1 |
CAediting_1101495 | chr16_22477922_+ | SINE | Alu | AluSx1 |
CAediting_1101496 | chr16_22477936_+ | SINE | Alu | AluSx1 |
CAediting_1101497 | chr16_22477937_+ | SINE | Alu | AluSx1 |
CAediting_1101498 | chr16_22477938_+ | SINE | Alu | AluSx1 |
CAediting_1101499 | chr16_22477945_+ | SINE | Alu | AluSx1 |
CAediting_1101500 | chr16_22478010_+ | SINE | Alu | AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for SMG1P1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SMG1P1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for SMG1P1 |
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The effects of the RNA editing to the miRNA binding sites for SMG1P1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for SMG1P1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SMG1P1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for SMG1P1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SMG1P1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
ESCA | CAediting_1101474 | chr16_22477082_+ | 0.00942500616910802 | 0.0370937 | 12.7429 |
ESCA | CAediting_1101475 | chr16_22477086_+ | 0.00596793814643815 | 0.00455589 | 918.262 |
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RelatedDrugs for SMG1P1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SMG1P1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |