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Editing gene: CENPK (CAeditome ID:64105)

Gene summary for CENPK

Gene summary

Gene information	Gene symbol	CENPK
	Gene ID	64105
	Gene name	centromere protein K
	Synonyms	AF5alpha\|CENP-K\|FKSG14\|P33\|Solt
	Cytomap	5q12.3
	Type of gene	protein-coding
	Description	centromere protein KSoxLZ/Sox6-binding protein Soltinterphase centromere complex protein 37leucine zipper protein FKSG14protein AF-5alpha
	Modification date	20210518
	UniProtAcc	Q9BS16
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for CENPK

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000123219.11

RNA A-to-I editing events in Cancer.

CAediting_411339(65521673, -), CAediting_411340(65521711, -), CAediting_411341(65522526, -), CAediting_411342(65522567, -), CAediting_411343(65522702, -), CAediting_411344(65526742, -), CAediting_411345(65526793, -), CAediting_411346(65529548, -), CAediting_411347(65529584, -), CAediting_411348(65529585, -), CAediting_411349(65529619, -), CAediting_411350(65529867, -), CAediting_411351(65530801, -), CAediting_411352(65530802, -), CAediting_411353(65530810, -), CAediting_411354(65530858, -), CAediting_411355(65530876, -), CAediting_411356(65533185, -), CAediting_411357(65533344, -), CAediting_411358(65533362, -), CAediting_411359(65534955, -), CAediting_411360(65534973, -), CAediting_411361(65534974, -), CAediting_411362(65534983, -), CAediting_411363(65535050, -), CAediting_411364(65535060, -), CAediting_411365(65535068, -), CAediting_411366(65535105, -), CAediting_411367(65535122, -), CAediting_411368(65535180, -), CAediting_411369(65535226, -), CAediting_411370(65535632, -), CAediting_411371(65535653, -), CAediting_411372(65535656, -), CAediting_411373(65535667, -), CAediting_411374(65535669, -), CAediting_411375(65535670, -), CAediting_411376(65535672, -), CAediting_411377(65535677, -), CAediting_411378(65535691, -), CAediting_411379(65535697, -), CAediting_411380(65535698, -), CAediting_411381(65535708, -), CAediting_411382(65536434, -), CAediting_411383(65536504, -), CAediting_411384(65537168, -), CAediting_411385(65537203, -), CAediting_411386(65537204, -), CAediting_411387(65537212, -), CAediting_411388(65537215, -), CAediting_411389(65537216, -), CAediting_411390(65537220, -), CAediting_411391(65537239, -), CAediting_411392(65537469, -), CAediting_411393(65540905, -), CAediting_411394(65540940, -), CAediting_411395(65540946, -), CAediting_411396(65541049, -), CAediting_411397(65541060, -), CAediting_411398(65541072, -), CAediting_411399(65541102, -), CAediting_411400(65542574, -), CAediting_411401(65542580, -), CAediting_411402(65542591, -), CAediting_411403(65547937, -), CAediting_411404(65551125, -), CAediting_411405(65551128, -), CAediting_411406(65551134, -), CAediting_411407(65551188, -), CAediting_411408(65551204, -), CAediting_411409(65552014, -), CAediting_411410(65552027, -), CAediting_411411(65552032, -), CAediting_411412(65552036, -), CAediting_411413(65552049, -), CAediting_411414(65552052, -), CAediting_411415(65552062, -), CAediting_411416(65552084, -), CAediting_411417(65552124, -), CAediting_411418(65556415, -), CAediting_411419(65556441, -),

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RNA editing positional annotations for CENPK using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_411407	chr5_65551188_-	nonsynonymous SNV	ENST00000505960.4	c.A296G	p.Q99R	D	.	D
CAediting_411407	chr5_65551188_-	nonsynonymous SNV	ENST00000510354.1	c.A296G	p.Q99R	D	.	D
CAediting_411408	chr5_65551204_-	nonsynonymous SNV	ENST00000505960.4	c.A280G	p.N94D	D	.	N
CAediting_411408	chr5_65551204_-	nonsynonymous SNV	ENST00000509397.4	c.A32G	p.Q11R	D	.	N
CAediting_411408	chr5_65551204_-	nonsynonymous SNV	ENST00000510354.1	c.A280G	p.N94D	D	.	N

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_411339	chr5_65521673_-	ncRNA_intronic
CAediting_411340	chr5_65521711_-	ncRNA_intronic
CAediting_411341	chr5_65522526_-	ncRNA_intronic
CAediting_411342	chr5_65522567_-	ncRNA_intronic
CAediting_411343	chr5_65522702_-	ncRNA_intronic
CAediting_411344	chr5_65526742_-	ncRNA_intronic
CAediting_411345	chr5_65526793_-	ncRNA_intronic
CAediting_411346	chr5_65529548_-	ncRNA_exonic
CAediting_411347	chr5_65529584_-	ncRNA_exonic
CAediting_411348	chr5_65529585_-	ncRNA_exonic
CAediting_411349	chr5_65529619_-	ncRNA_exonic
CAediting_411350	chr5_65529867_-	ncRNA_intronic
CAediting_411351	chr5_65530801_-	ncRNA_intronic
CAediting_411352	chr5_65530802_-	ncRNA_intronic
CAediting_411353	chr5_65530810_-	ncRNA_intronic
CAediting_411354	chr5_65530858_-	ncRNA_intronic
CAediting_411355	chr5_65530876_-	ncRNA_intronic
CAediting_411356	chr5_65533185_-	ncRNA_intronic
CAediting_411357	chr5_65533344_-	ncRNA_intronic
CAediting_411358	chr5_65533362_-	ncRNA_intronic
CAediting_411359	chr5_65534955_-	ncRNA_intronic
CAediting_411360	chr5_65534973_-	ncRNA_intronic
CAediting_411361	chr5_65534974_-	ncRNA_intronic
CAediting_411362	chr5_65534983_-	ncRNA_intronic
CAediting_411363	chr5_65535050_-	ncRNA_intronic
CAediting_411364	chr5_65535060_-	ncRNA_intronic
CAediting_411365	chr5_65535068_-	ncRNA_intronic
CAediting_411366	chr5_65535105_-	ncRNA_intronic
CAediting_411367	chr5_65535122_-	ncRNA_intronic
CAediting_411368	chr5_65535180_-	ncRNA_intronic
CAediting_411369	chr5_65535226_-	ncRNA_intronic
CAediting_411370	chr5_65535632_-	ncRNA_intronic
CAediting_411371	chr5_65535653_-	ncRNA_intronic
CAediting_411372	chr5_65535656_-	ncRNA_intronic
CAediting_411373	chr5_65535667_-	ncRNA_intronic
CAediting_411374	chr5_65535669_-	ncRNA_intronic
CAediting_411375	chr5_65535670_-	ncRNA_intronic
CAediting_411376	chr5_65535672_-	ncRNA_intronic
CAediting_411377	chr5_65535677_-	ncRNA_intronic
CAediting_411378	chr5_65535691_-	ncRNA_intronic
CAediting_411379	chr5_65535697_-	ncRNA_intronic
CAediting_411380	chr5_65535698_-	ncRNA_intronic
CAediting_411381	chr5_65535708_-	ncRNA_intronic
CAediting_411382	chr5_65536434_-	ncRNA_intronic
CAediting_411383	chr5_65536504_-	ncRNA_intronic
CAediting_411384	chr5_65537168_-	ncRNA_intronic
CAediting_411385	chr5_65537203_-	ncRNA_intronic
CAediting_411386	chr5_65537204_-	ncRNA_intronic
CAediting_411387	chr5_65537212_-	ncRNA_intronic
CAediting_411388	chr5_65537215_-	ncRNA_intronic
CAediting_411389	chr5_65537216_-	ncRNA_intronic
CAediting_411390	chr5_65537220_-	ncRNA_intronic
CAediting_411391	chr5_65537239_-	ncRNA_intronic
CAediting_411392	chr5_65537469_-	ncRNA_intronic
CAediting_411393	chr5_65540905_-	ncRNA_intronic
CAediting_411394	chr5_65540940_-	ncRNA_intronic
CAediting_411395	chr5_65540946_-	ncRNA_intronic
CAediting_411396	chr5_65541049_-	ncRNA_intronic
CAediting_411397	chr5_65541060_-	ncRNA_intronic
CAediting_411398	chr5_65541072_-	ncRNA_intronic
CAediting_411399	chr5_65541102_-	ncRNA_intronic
CAediting_411400	chr5_65542574_-	ncRNA_intronic
CAediting_411401	chr5_65542580_-	ncRNA_intronic
CAediting_411402	chr5_65542591_-	ncRNA_intronic
CAediting_411403	chr5_65547937_-	ncRNA_intronic
CAediting_411404	chr5_65551125_-	ncRNA_intronic
CAediting_411405	chr5_65551128_-	ncRNA_intronic
CAediting_411406	chr5_65551134_-	ncRNA_intronic
CAediting_411407	chr5_65551188_-	exonic
CAediting_411408	chr5_65551204_-	exonic
CAediting_411409	chr5_65552014_-	ncRNA_intronic
CAediting_411410	chr5_65552027_-	ncRNA_intronic
CAediting_411411	chr5_65552032_-	ncRNA_intronic
CAediting_411412	chr5_65552036_-	ncRNA_intronic
CAediting_411413	chr5_65552049_-	ncRNA_intronic
CAediting_411414	chr5_65552052_-	ncRNA_intronic
CAediting_411415	chr5_65552062_-	ncRNA_intronic
CAediting_411416	chr5_65552084_-	ncRNA_intronic
CAediting_411417	chr5_65552124_-	ncRNA_intronic
CAediting_411418	chr5_65556415_-	ncRNA_intronic
CAediting_411419	chr5_65556441_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_411339	chr5_65521673_-	SINE	Alu	AluSq2
CAediting_411340	chr5_65521711_-	SINE	Alu	AluSq2
CAediting_411341	chr5_65522526_-	SINE	Alu	AluJr
CAediting_411342	chr5_65522567_-	SINE	Alu	AluJr
CAediting_411343	chr5_65522702_-	SINE	Alu	AluJr
CAediting_411344	chr5_65526742_-	SINE	Alu	FLAM_A
CAediting_411345	chr5_65526793_-	SINE	Alu	FLAM_A
CAediting_411346	chr5_65529548_-	SINE	Alu	AluY
CAediting_411347	chr5_65529584_-	SINE	Alu	AluY
CAediting_411348	chr5_65529585_-	SINE	Alu	AluY
CAediting_411349	chr5_65529619_-	SINE	Alu	AluY
CAediting_411350	chr5_65529867_-	SINE	Alu	AluSg
CAediting_411351	chr5_65530801_-	SINE	Alu	AluJb
CAediting_411352	chr5_65530802_-	SINE	Alu	AluJb
CAediting_411353	chr5_65530810_-	SINE	Alu	AluJb
CAediting_411354	chr5_65530858_-	SINE	Alu	AluJb
CAediting_411355	chr5_65530876_-	SINE	Alu	AluJb
CAediting_411356	chr5_65533185_-	SINE	Alu	AluSx1
CAediting_411357	chr5_65533344_-	SINE	Alu	AluSx1
CAediting_411358	chr5_65533362_-	SINE	Alu	AluSx1
CAediting_411359	chr5_65534955_-	SINE	Alu	AluJb
CAediting_411360	chr5_65534973_-	SINE	Alu	AluJb
CAediting_411361	chr5_65534974_-	SINE	Alu	AluJb
CAediting_411362	chr5_65534983_-	SINE	Alu	AluJb
CAediting_411363	chr5_65535050_-	SINE	Alu	AluJb
CAediting_411364	chr5_65535060_-	SINE	Alu	AluJb
CAediting_411365	chr5_65535068_-	SINE	Alu	AluJb
CAediting_411366	chr5_65535105_-	SINE	Alu	AluJb
CAediting_411367	chr5_65535122_-	SINE	Alu	AluJb
CAediting_411368	chr5_65535180_-	SINE	Alu	AluJb
CAediting_411369	chr5_65535226_-	SINE	Alu	AluJb
CAediting_411370	chr5_65535632_-	LTR	ERVL	MER21B
CAediting_411371	chr5_65535653_-	LTR	ERVL	MER21B
CAediting_411372	chr5_65535656_-	LTR	ERVL	MER21B
CAediting_411373	chr5_65535667_-	LTR	ERVL	MER21B
CAediting_411374	chr5_65535669_-	LTR	ERVL	MER21B
CAediting_411375	chr5_65535670_-	LTR	ERVL	MER21B
CAediting_411376	chr5_65535672_-	LTR	ERVL	MER21B
CAediting_411377	chr5_65535677_-	LTR	ERVL	MER21B
CAediting_411378	chr5_65535691_-	LTR	ERVL	MER21B
CAediting_411379	chr5_65535697_-	LTR	ERVL	MER21B
CAediting_411380	chr5_65535698_-	LTR	ERVL	MER21B
CAediting_411381	chr5_65535708_-	LTR	ERVL	MER21B
CAediting_411382	chr5_65536434_-	SINE	Alu	AluJr4
CAediting_411383	chr5_65536504_-	SINE	Alu	AluJr4
CAediting_411385	chr5_65537203_-	LTR	ERVL	MER77
CAediting_411386	chr5_65537204_-	LTR	ERVL	MER77
CAediting_411387	chr5_65537212_-	LTR	ERVL	MER77
CAediting_411388	chr5_65537215_-	LTR	ERVL	MER77
CAediting_411389	chr5_65537216_-	LTR	ERVL	MER77
CAediting_411390	chr5_65537220_-	LTR	ERVL	MER77
CAediting_411391	chr5_65537239_-	LTR	ERVL	MER77
CAediting_411392	chr5_65537469_-	SINE	Alu	AluY
CAediting_411393	chr5_65540905_-	SINE	Alu	AluJb
CAediting_411394	chr5_65540940_-	SINE	Alu	AluJb
CAediting_411395	chr5_65540946_-	SINE	Alu	AluJb
CAediting_411396	chr5_65541049_-	SINE	Alu	AluJb
CAediting_411397	chr5_65541060_-	SINE	Alu	AluJb
CAediting_411398	chr5_65541072_-	SINE	Alu	AluJb
CAediting_411399	chr5_65541102_-	SINE	Alu	AluJb
CAediting_411400	chr5_65542574_-	SINE	Alu	AluSg
CAediting_411401	chr5_65542580_-	SINE	Alu	AluSg
CAediting_411402	chr5_65542591_-	SINE	Alu	AluSg
CAediting_411403	chr5_65547937_-	SINE	Alu	AluY
CAediting_411404	chr5_65551125_-	SINE	Alu	AluJb
CAediting_411405	chr5_65551128_-	SINE	Alu	AluJb
CAediting_411406	chr5_65551134_-	SINE	Alu	AluJb
CAediting_411407	chr5_65551188_-	SINE	Alu	AluJb
CAediting_411408	chr5_65551204_-	SINE	Alu	AluJb
CAediting_411409	chr5_65552014_-	SINE	Alu	AluSz6
CAediting_411410	chr5_65552027_-	SINE	Alu	AluSz6
CAediting_411411	chr5_65552032_-	SINE	Alu	AluSz6
CAediting_411412	chr5_65552036_-	SINE	Alu	AluSz6
CAediting_411413	chr5_65552049_-	SINE	Alu	AluSz6
CAediting_411414	chr5_65552052_-	SINE	Alu	AluSz6
CAediting_411415	chr5_65552062_-	SINE	Alu	AluSz6
CAediting_411416	chr5_65552084_-	SINE	Alu	AluSz6
CAediting_411417	chr5_65552124_-	SINE	Alu	AluSz6
CAediting_411418	chr5_65556415_-	SINE	Alu	AluJr4
CAediting_411419	chr5_65556441_-	SINE	Alu	AluJr4

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RNA A-to-I editing events in the alternative splicing sites for CENPK

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000123219.11.CENPK.

Correlation between RNA A-to-I editing and PSI for ENSG00000123219.11.CENPK.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CENPK

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CENPK

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CENPK

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000509397	hsa-miR-1228-3p	65551120	65551126	7mer-m8	65551119	65551142	146.00	-19.38
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000509397	hsa-miR-20b-3p	65551125	65551131	7mer-m8	65551124	65551146	153.00	-18.28
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000505960	hsa-miR-1228-3p	65551120	65551126	7mer-m8	65551119	65551142	146.00	-19.38
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000505960	hsa-miR-20b-3p	65551125	65551131	7mer-m8	65551124	65551146	153.00	-18.28
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000510354	hsa-miR-1228-3p	65551120	65551126	7mer-m8	65551119	65551142	146.00	-19.38
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000510354	hsa-miR-20b-3p	65551125	65551131	7mer-m8	65551124	65551146	153.00	-18.28
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000509397	hsa-miR-1910-5p	65551128	65551134	7mer-m8	65551127	65551145	144.00	-17.01
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000509397	hsa-miR-6516-5p	65551125	65551131	7mer-m8	65551124	65551146	147.00	-14.54
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000505960	hsa-miR-1910-5p	65551128	65551134	7mer-m8	65551127	65551145	144.00	-17.01
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000505960	hsa-miR-6516-5p	65551125	65551131	7mer-m8	65551124	65551146	147.00	-14.54
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000510354	hsa-miR-1910-5p	65551128	65551134	7mer-m8	65551127	65551145	144.00	-17.01
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000510354	hsa-miR-6516-5p	65551125	65551131	7mer-m8	65551124	65551146	147.00	-14.54
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000509397	hsa-miR-5588-3p	65551128	65551135	8mer-1a	65551128	65551147	148.00	-17.06
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000509397	hsa-miR-5690	65551134	65551140	7mer-m8	65551133	65551153	145.00	-17.72
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000509397	hsa-miR-7977	65551131	65551137	7mer-m8	65551130	65551146	145.00	-12.78
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000505960	hsa-miR-5588-3p	65551128	65551135	8mer-1a	65551128	65551147	148.00	-17.06
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000505960	hsa-miR-5690	65551134	65551140	7mer-m8	65551133	65551153	145.00	-17.72
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000505960	hsa-miR-7977	65551131	65551137	7mer-m8	65551130	65551146	145.00	-12.78
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000510354	hsa-miR-5588-3p	65551128	65551135	8mer-1a	65551128	65551147	148.00	-17.06
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000510354	hsa-miR-5690	65551134	65551140	7mer-m8	65551133	65551153	145.00	-17.72
CAediting_411406	chr5_65551134_-	ENSG00000123219.11	ENST00000510354	hsa-miR-7977	65551131	65551137	7mer-m8	65551130	65551146	145.00	-12.78

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000509397	hsa-miR-216b-3p	65551120	65551126	7mer-m8	65551119	65551144	153	-18.33
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000509397	hsa-miR-4540	65551128	65551134	7mer-m8	65551127	65551149	152	-18.45
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000509397	hsa-miR-6500-3p	65551122	65551128	7mer-m8	65551121	65551141	142	-15.69
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000505960	hsa-miR-216b-3p	65551120	65551126	7mer-m8	65551119	65551144	153	-18.33
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000505960	hsa-miR-4540	65551128	65551134	7mer-m8	65551127	65551149	152	-18.45
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000505960	hsa-miR-6500-3p	65551122	65551128	7mer-m8	65551121	65551141	142	-15.69
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000510354	hsa-miR-216b-3p	65551120	65551126	7mer-m8	65551119	65551144	153	-18.33
CAediting_411405	chr5_65551128_-	ENSG00000123219.11	ENST00000510354	hsa-miR-4540	65551128	65551134	7mer-m8	65551127	65551149	152	-18.45
CAediting_411404	chr5_65551125_-	ENSG00000123219.11	ENST00000510354	hsa-miR-6500-3p	65551122	65551128	7mer-m8	65551121	65551141	142	-15.69

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_228905	chr2_188297554_+	ENSG00000123219.11	ENST00000509397	hsa-miR-561-3p	65528520	65528526	7mer-m8	65528519	65528537	148	-15.32
CAediting_228905	chr2_188297554_+	ENSG00000123219.11	ENST00000505960	hsa-miR-561-3p	65528520	65528526	7mer-m8	65528519	65528537	148	-15.32
CAediting_1229414	chr17_67471546_+	ENSG00000123219.11	ENST00000510354	hsa-miR-548aa	65551040	65551046	7mer-m8	65551039	65551063	140	-10.6
CAediting_1229414	chr17_67471546_+	ENSG00000123219.11	ENST00000510354	hsa-miR-548aa	65550557	65550563	7mer-m8	65550556	65550581	154	-20.75
CAediting_1524209	chrX_134546392_-	ENSG00000123219.11	ENST00000514814	hsa-miR-503-5p	65518331	65518337	7mer-1a	65518331	65518353	141	-21.09
CAediting_1524209	chrX_134546392_-	ENSG00000123219.11	ENST00000396679	hsa-miR-503-5p	65518331	65518337	7mer-1a	65518331	65518353	141	-21.09
CAediting_1524209	chrX_134546392_-	ENSG00000123219.11	ENST00000242872	hsa-miR-503-5p	65518331	65518337	7mer-1a	65518331	65518353	141	-21.09
CAediting_1524209	chrX_134546392_-	ENSG00000123219.11	ENST00000508421	hsa-miR-503-5p	65518331	65518337	7mer-1a	65518331	65518353	141	-21.09

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_117844	chr1_162342605_+	ENSG00000123219.11	ENST00000514814	hsa-miR-556-3p	65518035	65518041	7mer-m8	65518034	65518061	150	-14.38
CAediting_117844	chr1_162342605_+	ENSG00000123219.11	ENST00000396679	hsa-miR-556-3p	65518035	65518041	7mer-m8	65518034	65518061	150	-14.38
CAediting_117844	chr1_162342605_+	ENSG00000123219.11	ENST00000242872	hsa-miR-556-3p	65518035	65518041	7mer-m8	65518034	65518061	150	-14.38
CAediting_117844	chr1_162342605_+	ENSG00000123219.11	ENST00000508421	hsa-miR-556-3p	65518035	65518041	7mer-m8	65518034	65518061	150	-14.38

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CENPK

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000505960.4	nonsense_mediated_decay
ENST00000509397.4	nonsense_mediated_decay
ENST00000513951.1	retained_intron
ENST00000510354.1	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_411404	ENST00000505960.4	chr5_65551125_-	-172.00	-171.60	-177.80
CAediting_411405	ENST00000505960.4	chr5_65551128_-	-176.50	-171.60	-177.80
CAediting_411406	ENST00000505960.4	chr5_65551134_-	-174.00	-171.60	-177.80
CAediting_411407	ENST00000505960.4	chr5_65551188_-	-172.10	-171.60	-177.80
CAediting_411408	ENST00000505960.4	chr5_65551204_-	-171.30	-171.60	-177.80
CAediting_411404	ENST00000509397.4	chr5_65551125_-	-102.50	-101.60	-107.70
CAediting_411405	ENST00000509397.4	chr5_65551128_-	-105.60	-101.60	-107.70
CAediting_411406	ENST00000509397.4	chr5_65551134_-	-103.10	-101.60	-107.70
CAediting_411407	ENST00000509397.4	chr5_65551188_-	-102.30	-101.60	-107.70
CAediting_411408	ENST00000509397.4	chr5_65551204_-	-101.20	-101.60	-107.70
CAediting_411346	ENST00000513951.1	chr5_65529548_-	-185.20	-184.00	-190.60
CAediting_411347	ENST00000513951.1	chr5_65529584_-	-188.70	-184.00	-190.60
CAediting_411348	ENST00000513951.1	chr5_65529585_-	-184.10	-184.00	-190.60
CAediting_411349	ENST00000513951.1	chr5_65529619_-	-186.00	-184.00	-190.60
CAediting_411404	ENST00000510354.1	chr5_65551125_-	-278.80	-277.50	-282.90
CAediting_411405	ENST00000510354.1	chr5_65551128_-	-276.50	-277.50	-282.90
CAediting_411406	ENST00000510354.1	chr5_65551134_-	-277.50	-277.50	-282.90
CAediting_411407	ENST00000510354.1	chr5_65551188_-	-277.40	-277.50	-282.90
CAediting_411408	ENST00000510354.1	chr5_65551204_-	-277.20	-277.50	-282.90

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Relation with ADAR for CENPK

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for CENPK

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for CENPK

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for CENPK

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CENPK

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
CENPK	C3658266	Prostatic Cancer, Castration-Resistant	1	CTD_human
CENPK	C3658267	Prostatic Neoplasms, Castration-Resistant	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene