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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CLSPN (CAeditome ID:63967)

Gene summary for CLSPN

check button Gene summary
Gene informationGene symbol

CLSPN

Gene ID

63967

Gene nameclaspin
Synonyms-
Cytomap

1p34.3

Type of geneprotein-coding
Descriptionclaspinclaspin homolog
Modification date20210518
UniProtAcc

Q9HAW4

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CLSPN

GO:0000076

Claspin

12766152

CLSPN

GO:0000217

Claspin

5226314

CLSPN

GO:0007095

Claspin

18662541

CLSPN

GO:0018105

Claspin

16885022

CLSPN

GO:0032147

Claspin

16885022

CLSPN

GO:0005634

Claspin

12766152

CLSPN

GO:0005654

Claspin

0000052

CLSPN

GO:0005794

Claspin

0000052


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RNA A-to-I events for CLSPN

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000092853.12

check button RNA A-to-I editing events in Cancer.
CAediting_44315(35720485, -), CAediting_44316(35720522, -), CAediting_44317(35720546, -), CAediting_44318(35720555, -), CAediting_44319(35720578, -), CAediting_44320(35720588, -), CAediting_44321(35720594, -), CAediting_44322(35720623, -), CAediting_44323(35720625, -), CAediting_44324(35720626, -), CAediting_44325(35720627, -), CAediting_44326(35720630, -), CAediting_44327(35720636, -), CAediting_44328(35720641, -), CAediting_44329(35720642, -), CAediting_44330(35720643, -), CAediting_44331(35720660, -), CAediting_44332(35720680, -), CAediting_44333(35720713, -), CAediting_44334(35720719, -), CAediting_44335(35720727, -), CAediting_44336(35720737, -), CAediting_44337(35720741, -), CAediting_44338(35723985, -), CAediting_44339(35728185, -), CAediting_44340(35728230, -), CAediting_44341(35728255, -), CAediting_44342(35728259, -), CAediting_44343(35728354, -), CAediting_44344(35728355, -), CAediting_44345(35732980, -), CAediting_44346(35733027, -), CAediting_44347(35733037, -), CAediting_44348(35733041, -), CAediting_44349(35733050, -), CAediting_44350(35733061, -), CAediting_44351(35733070, -), CAediting_44352(35733075, -), CAediting_44353(35733103, -), CAediting_44354(35733113, -), CAediting_44355(35733132, -), CAediting_44356(35733136, -), CAediting_44357(35733137, -), CAediting_44358(35733138, -), CAediting_44359(35733145, -), CAediting_44360(35733147, -), CAediting_44361(35733161, -), CAediting_44362(35733168, -), CAediting_44363(35733200, -), CAediting_44364(35733201, -), CAediting_44365(35733205, -), CAediting_44366(35733214, -), CAediting_44367(35733224, -), CAediting_44368(35733232, -), CAediting_44369(35733235, -), CAediting_44370(35733241, -), CAediting_44371(35733414, -), CAediting_44372(35733441, -), CAediting_44373(35733757, -), CAediting_44374(35733760, -), CAediting_44375(35733806, -), CAediting_44376(35733825, -), CAediting_44377(35733828, -), CAediting_44378(35733829, -), CAediting_44379(35733833, -), CAediting_44380(35733881, -), CAediting_44381(35733978, -), CAediting_44382(35734405, -), CAediting_44383(35734423, -), CAediting_44384(35734435, -), CAediting_44385(35734437, -), CAediting_44386(35734454, -), CAediting_44387(35734458, -), CAediting_44388(35734463, -), CAediting_44389(35734476, -), CAediting_44390(35734507, -), CAediting_44391(35734514, -), CAediting_44392(35734517, -), CAediting_44393(35734532, -), CAediting_44394(35734533, -), CAediting_44395(35734557, -), CAediting_44396(35734559, -), CAediting_44397(35734566, -), CAediting_44398(35734569, -), CAediting_44399(35734571, -), CAediting_44400(35734572, -), CAediting_44401(35734616, -), CAediting_44402(35734621, -), CAediting_44403(35734631, -), CAediting_44404(35734634, -), CAediting_44405(35734642, -), CAediting_44406(35734644, -), CAediting_44407(35734676, -), CAediting_44408(35735438, -), CAediting_44409(35735451, -), CAediting_44410(35735463, -), CAediting_44411(35735464, -), CAediting_44412(35735465, -), CAediting_44413(35735473, -), CAediting_44414(35735490, -), CAediting_44415(35735491, -), CAediting_44416(35735516, -), CAediting_44417(35735525, -), CAediting_44418(35735528, -), CAediting_44419(35735540, -), CAediting_44420(35735551, -), CAediting_44421(35735559, -), CAediting_44422(35735560, -), CAediting_44423(35735568, -), CAediting_44424(35735600, -), CAediting_44425(35735625, -), CAediting_44426(35735670, -), CAediting_44427(35735694, -), CAediting_44428(35735700, -), CAediting_44429(35735963, -), CAediting_44430(35735977, -), CAediting_44431(35735988, -), CAediting_44432(35735999, -), CAediting_44433(35736000, -), CAediting_44434(35736001, -), CAediting_44435(35736035, -), CAediting_44436(35736038, -), CAediting_44437(35736052, -), CAediting_44438(35736055, -), CAediting_44439(35736061, -), CAediting_44440(35736069, -), CAediting_44441(35736070, -), CAediting_44442(35736074, -), CAediting_44443(35736096, -), CAediting_44444(35736106, -), CAediting_44445(35736118, -), CAediting_44446(35736135, -), CAediting_44447(35736136, -), CAediting_44448(35736156, -), CAediting_44449(35750248, -), CAediting_44450(35750443, -), CAediting_44451(35758303, -), CAediting_44452(35758907, -), CAediting_44453(35759894, -), CAediting_44454(35759936, -), CAediting_44455(35760007, -), CAediting_44456(35760012, -), CAediting_44457(35760013, -), CAediting_44458(35760033, -), CAediting_44459(35760104, -),

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RNA editing positional annotations for CLSPN using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_44315chr1_35720485_-UTR3
CAediting_44316chr1_35720522_-UTR3
CAediting_44317chr1_35720546_-UTR3
CAediting_44318chr1_35720555_-UTR3
CAediting_44319chr1_35720578_-UTR3
CAediting_44320chr1_35720588_-UTR3
CAediting_44321chr1_35720594_-UTR3
CAediting_44322chr1_35720623_-UTR3
CAediting_44323chr1_35720625_-UTR3
CAediting_44324chr1_35720626_-UTR3
CAediting_44325chr1_35720627_-UTR3
CAediting_44326chr1_35720630_-UTR3
CAediting_44327chr1_35720636_-UTR3
CAediting_44328chr1_35720641_-UTR3
CAediting_44329chr1_35720642_-UTR3
CAediting_44330chr1_35720643_-UTR3
CAediting_44331chr1_35720660_-UTR3
CAediting_44332chr1_35720680_-UTR3
CAediting_44333chr1_35720713_-UTR3
CAediting_44334chr1_35720719_-UTR3
CAediting_44335chr1_35720727_-UTR3
CAediting_44336chr1_35720737_-UTR3
CAediting_44337chr1_35720741_-UTR3
CAediting_44338chr1_35723985_-intronic
CAediting_44339chr1_35728185_-intronic
CAediting_44340chr1_35728230_-intronic
CAediting_44341chr1_35728255_-intronic
CAediting_44342chr1_35728259_-intronic
CAediting_44343chr1_35728354_-intronic
CAediting_44344chr1_35728355_-intronic
CAediting_44345chr1_35732980_-intronic
CAediting_44346chr1_35733027_-intronic
CAediting_44347chr1_35733037_-intronic
CAediting_44348chr1_35733041_-intronic
CAediting_44349chr1_35733050_-intronic
CAediting_44350chr1_35733061_-intronic
CAediting_44351chr1_35733070_-intronic
CAediting_44352chr1_35733075_-intronic
CAediting_44353chr1_35733103_-intronic
CAediting_44354chr1_35733113_-intronic
CAediting_44355chr1_35733132_-intronic
CAediting_44356chr1_35733136_-intronic
CAediting_44357chr1_35733137_-intronic
CAediting_44358chr1_35733138_-intronic
CAediting_44359chr1_35733145_-intronic
CAediting_44360chr1_35733147_-intronic
CAediting_44361chr1_35733161_-intronic
CAediting_44362chr1_35733168_-intronic
CAediting_44363chr1_35733200_-intronic
CAediting_44364chr1_35733201_-intronic
CAediting_44365chr1_35733205_-intronic
CAediting_44366chr1_35733214_-intronic
CAediting_44367chr1_35733224_-intronic
CAediting_44368chr1_35733232_-intronic
CAediting_44369chr1_35733235_-intronic
CAediting_44370chr1_35733241_-intronic
CAediting_44371chr1_35733414_-intronic
CAediting_44372chr1_35733441_-intronic
CAediting_44373chr1_35733757_-intronic
CAediting_44374chr1_35733760_-intronic
CAediting_44375chr1_35733806_-intronic
CAediting_44376chr1_35733825_-intronic
CAediting_44377chr1_35733828_-intronic
CAediting_44378chr1_35733829_-intronic
CAediting_44379chr1_35733833_-intronic
CAediting_44380chr1_35733881_-intronic
CAediting_44381chr1_35733978_-intronic
CAediting_44382chr1_35734405_-intronic
CAediting_44383chr1_35734423_-intronic
CAediting_44384chr1_35734435_-intronic
CAediting_44385chr1_35734437_-intronic
CAediting_44386chr1_35734454_-intronic
CAediting_44387chr1_35734458_-intronic
CAediting_44388chr1_35734463_-intronic
CAediting_44389chr1_35734476_-intronic
CAediting_44390chr1_35734507_-intronic
CAediting_44391chr1_35734514_-intronic
CAediting_44392chr1_35734517_-intronic
CAediting_44393chr1_35734532_-intronic
CAediting_44394chr1_35734533_-intronic
CAediting_44395chr1_35734557_-intronic
CAediting_44396chr1_35734559_-intronic
CAediting_44397chr1_35734566_-intronic
CAediting_44398chr1_35734569_-intronic
CAediting_44399chr1_35734571_-intronic
CAediting_44400chr1_35734572_-intronic
CAediting_44401chr1_35734616_-intronic
CAediting_44402chr1_35734621_-intronic
CAediting_44403chr1_35734631_-intronic
CAediting_44404chr1_35734634_-intronic
CAediting_44405chr1_35734642_-intronic
CAediting_44406chr1_35734644_-intronic
CAediting_44407chr1_35734676_-intronic
CAediting_44408chr1_35735438_-intronic
CAediting_44409chr1_35735451_-intronic
CAediting_44410chr1_35735463_-intronic
CAediting_44411chr1_35735464_-intronic
CAediting_44412chr1_35735465_-intronic
CAediting_44413chr1_35735473_-intronic
CAediting_44414chr1_35735490_-intronic
CAediting_44415chr1_35735491_-intronic
CAediting_44416chr1_35735516_-intronic
CAediting_44417chr1_35735525_-intronic
CAediting_44418chr1_35735528_-intronic
CAediting_44419chr1_35735540_-intronic
CAediting_44420chr1_35735551_-intronic
CAediting_44421chr1_35735559_-intronic
CAediting_44422chr1_35735560_-intronic
CAediting_44423chr1_35735568_-intronic
CAediting_44424chr1_35735600_-intronic
CAediting_44425chr1_35735625_-intronic
CAediting_44426chr1_35735670_-intronic
CAediting_44427chr1_35735694_-intronic
CAediting_44428chr1_35735700_-intronic
CAediting_44429chr1_35735963_-intronic
CAediting_44430chr1_35735977_-intronic
CAediting_44431chr1_35735988_-intronic
CAediting_44432chr1_35735999_-intronic
CAediting_44433chr1_35736000_-intronic
CAediting_44434chr1_35736001_-intronic
CAediting_44435chr1_35736035_-intronic
CAediting_44436chr1_35736038_-intronic
CAediting_44437chr1_35736052_-intronic
CAediting_44438chr1_35736055_-intronic
CAediting_44439chr1_35736061_-intronic
CAediting_44440chr1_35736069_-intronic
CAediting_44441chr1_35736070_-intronic
CAediting_44442chr1_35736074_-intronic
CAediting_44443chr1_35736096_-intronic
CAediting_44444chr1_35736106_-intronic
CAediting_44445chr1_35736118_-intronic
CAediting_44446chr1_35736135_-intronic
CAediting_44447chr1_35736136_-intronic
CAediting_44448chr1_35736156_-intronic
CAediting_44449chr1_35750248_-intronic
CAediting_44450chr1_35750443_-intronic
CAediting_44451chr1_35758303_-intronic
CAediting_44452chr1_35758907_-intronic
CAediting_44453chr1_35759894_-intronic
CAediting_44454chr1_35759936_-intronic
CAediting_44455chr1_35760007_-intronic
CAediting_44456chr1_35760012_-intronic
CAediting_44457chr1_35760013_-intronic
CAediting_44458chr1_35760033_-intronic
CAediting_44459chr1_35760104_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_44315chr1_35720485_-SINEAluAluSg
CAediting_44316chr1_35720522_-SINEAluAluSg
CAediting_44317chr1_35720546_-SINEAluAluSg
CAediting_44318chr1_35720555_-SINEAluAluSg
CAediting_44319chr1_35720578_-SINEAluAluSg
CAediting_44320chr1_35720588_-SINEAluAluSg
CAediting_44321chr1_35720594_-SINEAluAluSg
CAediting_44322chr1_35720623_-SINEAluAluSg
CAediting_44323chr1_35720625_-SINEAluAluSg
CAediting_44324chr1_35720626_-SINEAluAluSg
CAediting_44325chr1_35720627_-SINEAluAluSg
CAediting_44326chr1_35720630_-SINEAluAluSg
CAediting_44327chr1_35720636_-SINEAluAluSg
CAediting_44328chr1_35720641_-SINEAluAluSg
CAediting_44329chr1_35720642_-SINEAluAluSg
CAediting_44330chr1_35720643_-SINEAluAluSg
CAediting_44331chr1_35720660_-SINEAluAluSg
CAediting_44332chr1_35720680_-SINEAluAluSg
CAediting_44333chr1_35720713_-SINEAluAluSg
CAediting_44334chr1_35720719_-SINEAluAluSg
CAediting_44335chr1_35720727_-SINEAluAluSg
CAediting_44336chr1_35720737_-SINEAluAluSg
CAediting_44337chr1_35720741_-SINEAluAluSg
CAediting_44338chr1_35723985_-SINEAluAluSz6
CAediting_44339chr1_35728185_-SINEAluAluJb
CAediting_44340chr1_35728230_-SINEAluAluJb
CAediting_44341chr1_35728255_-SINEAluAluJb
CAediting_44342chr1_35728259_-SINEAluAluJb
CAediting_44343chr1_35728354_-SINEAluAluJb
CAediting_44344chr1_35728355_-SINEAluAluJb
CAediting_44345chr1_35732980_-SINEAluAluSx1
CAediting_44346chr1_35733027_-SINEAluAluSx1
CAediting_44347chr1_35733037_-SINEAluAluSx1
CAediting_44348chr1_35733041_-SINEAluAluSx1
CAediting_44349chr1_35733050_-SINEAluAluSx1
CAediting_44350chr1_35733061_-SINEAluAluSx1
CAediting_44351chr1_35733070_-SINEAluAluSx1
CAediting_44352chr1_35733075_-SINEAluAluSx1
CAediting_44353chr1_35733103_-SINEAluAluSx1
CAediting_44354chr1_35733113_-SINEAluAluSx1
CAediting_44355chr1_35733132_-SINEAluAluSx1
CAediting_44356chr1_35733136_-SINEAluAluSx1
CAediting_44357chr1_35733137_-SINEAluAluSx1
CAediting_44358chr1_35733138_-SINEAluAluSx1
CAediting_44359chr1_35733145_-SINEAluAluSx1
CAediting_44360chr1_35733147_-SINEAluAluSx1
CAediting_44361chr1_35733161_-SINEAluAluSx1
CAediting_44362chr1_35733168_-SINEAluAluSx1
CAediting_44363chr1_35733200_-SINEAluAluSx1
CAediting_44364chr1_35733201_-SINEAluAluSx1
CAediting_44365chr1_35733205_-SINEAluAluSx1
CAediting_44366chr1_35733214_-SINEAluAluSx1
CAediting_44367chr1_35733224_-SINEAluAluSx1
CAediting_44368chr1_35733232_-SINEAluAluSx1
CAediting_44369chr1_35733235_-SINEAluAluSx1
CAediting_44370chr1_35733241_-SINEAluAluSx1
CAediting_44371chr1_35733414_-SINEAluFLAM_C
CAediting_44372chr1_35733441_-SINEAluFLAM_C
CAediting_44373chr1_35733757_-SINEAluAluJr
CAediting_44374chr1_35733760_-SINEAluAluJr
CAediting_44375chr1_35733806_-SINEAluAluJr
CAediting_44376chr1_35733825_-SINEAluAluJr
CAediting_44377chr1_35733828_-SINEAluAluJr
CAediting_44378chr1_35733829_-SINEAluAluJr
CAediting_44379chr1_35733833_-SINEAluAluJr
CAediting_44380chr1_35733881_-SINEAluAluJr
CAediting_44381chr1_35733978_-SINEAluAluJr
CAediting_44382chr1_35734405_-SINEAluAluSx1
CAediting_44383chr1_35734423_-SINEAluAluSx1
CAediting_44384chr1_35734435_-SINEAluAluSx1
CAediting_44385chr1_35734437_-SINEAluAluSx1
CAediting_44386chr1_35734454_-SINEAluAluSx1
CAediting_44387chr1_35734458_-SINEAluAluSx1
CAediting_44388chr1_35734463_-SINEAluAluSx1
CAediting_44389chr1_35734476_-SINEAluAluSx1
CAediting_44390chr1_35734507_-SINEAluAluSx1
CAediting_44391chr1_35734514_-SINEAluAluSx1
CAediting_44392chr1_35734517_-SINEAluAluSx1
CAediting_44393chr1_35734532_-SINEAluAluSx1
CAediting_44394chr1_35734533_-SINEAluAluSx1
CAediting_44395chr1_35734557_-SINEAluAluSx1
CAediting_44396chr1_35734559_-SINEAluAluSx1
CAediting_44397chr1_35734566_-SINEAluAluSx1
CAediting_44398chr1_35734569_-SINEAluAluSx1
CAediting_44399chr1_35734571_-SINEAluAluSx1
CAediting_44400chr1_35734572_-SINEAluAluSx1
CAediting_44401chr1_35734616_-SINEAluAluSx1
CAediting_44402chr1_35734621_-SINEAluAluSx1
CAediting_44403chr1_35734631_-SINEAluAluSx1
CAediting_44404chr1_35734634_-SINEAluAluSx1
CAediting_44405chr1_35734642_-SINEAluAluSx1
CAediting_44406chr1_35734644_-SINEAluAluSx1
CAediting_44407chr1_35734676_-SINEAluAluSx1
CAediting_44408chr1_35735438_-SINEAluAluSz
CAediting_44409chr1_35735451_-SINEAluAluSz
CAediting_44410chr1_35735463_-SINEAluAluSz
CAediting_44411chr1_35735464_-SINEAluAluSz
CAediting_44412chr1_35735465_-SINEAluAluSz
CAediting_44413chr1_35735473_-SINEAluAluSz
CAediting_44414chr1_35735490_-SINEAluAluSz
CAediting_44415chr1_35735491_-SINEAluAluSz
CAediting_44416chr1_35735516_-SINEAluAluSz
CAediting_44417chr1_35735525_-SINEAluAluSz
CAediting_44418chr1_35735528_-SINEAluAluSz
CAediting_44419chr1_35735540_-SINEAluAluSz
CAediting_44420chr1_35735551_-SINEAluAluSz
CAediting_44421chr1_35735559_-SINEAluAluSz
CAediting_44422chr1_35735560_-SINEAluAluSz
CAediting_44423chr1_35735568_-SINEAluAluSz
CAediting_44424chr1_35735600_-SINEAluAluSz
CAediting_44425chr1_35735625_-SINEAluAluSz
CAediting_44426chr1_35735670_-SINEAluAluSz
CAediting_44427chr1_35735694_-SINEAluAluSz
CAediting_44428chr1_35735700_-SINEAluAluSz
CAediting_44429chr1_35735963_-SINEAluAluSz
CAediting_44430chr1_35735977_-SINEAluAluSz
CAediting_44431chr1_35735988_-SINEAluAluSz
CAediting_44432chr1_35735999_-SINEAluAluSz
CAediting_44433chr1_35736000_-SINEAluAluSz
CAediting_44434chr1_35736001_-SINEAluAluSz
CAediting_44435chr1_35736035_-SINEAluAluSz
CAediting_44436chr1_35736038_-SINEAluAluSz
CAediting_44437chr1_35736052_-SINEAluAluSz
CAediting_44438chr1_35736055_-SINEAluAluSz
CAediting_44439chr1_35736061_-SINEAluAluSz
CAediting_44440chr1_35736069_-SINEAluAluSz
CAediting_44441chr1_35736070_-SINEAluAluSz
CAediting_44442chr1_35736074_-SINEAluAluSz
CAediting_44443chr1_35736096_-SINEAluAluSz
CAediting_44444chr1_35736106_-SINEAluAluSz
CAediting_44445chr1_35736118_-SINEAluAluSz
CAediting_44446chr1_35736135_-SINEAluAluSz
CAediting_44447chr1_35736136_-SINEAluAluSz
CAediting_44448chr1_35736156_-SINEAluAluSz
CAediting_44449chr1_35750248_-SINEAluFLAM_C
CAediting_44450chr1_35750443_-SINEAluAluSx
CAediting_44451chr1_35758303_-SINEAluAluJb
CAediting_44452chr1_35758907_-SINEAluFLAM_A
CAediting_44453chr1_35759894_-SINEAluAluSx4
CAediting_44454chr1_35759936_-SINEAluAluSx4
CAediting_44455chr1_35760007_-SINEAluAluSx4
CAediting_44456chr1_35760012_-SINEAluAluSx4
CAediting_44457chr1_35760013_-SINEAluAluSx4
CAediting_44458chr1_35760033_-SINEAluAluSx4
CAediting_44459chr1_35760104_-SINEAluAluSx4

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RNA A-to-I editing events in the alternative splicing sites for CLSPN

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000092853.12.CLSPN.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000092853.12.CLSPN.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CLSPN

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CLSPN

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CLSPN

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_44317chr1_35720546_-ENSG00000092853.12ENST00000251195hsa-miR-443735720543357205497mer-m83572054235720562146.00-19.53
CAediting_44319chr1_35720578_-ENSG00000092853.12ENST00000251195hsa-miR-1207-3p35720578357205847mer-m83572057735720594140.00-12.56
CAediting_44319chr1_35720578_-ENSG00000092853.12ENST00000251195hsa-miR-64635720576357205827mer-m83572057535720593145.00-14.99
CAediting_44325chr1_35720627_-ENSG00000092853.12ENST00000251195hsa-miR-222-5p35720625357206328mer-1a3572062535720645141.00-9.81
CAediting_44325chr1_35720627_-ENSG00000092853.12ENST00000251195hsa-miR-30a-3p35720623357206308mer-1a3572062335720647154.00-11.94
CAediting_44325chr1_35720627_-ENSG00000092853.12ENST00000251195hsa-miR-30d-3p35720623357206308mer-1a3572062335720645153.00-12.10
CAediting_44325chr1_35720627_-ENSG00000092853.12ENST00000251195hsa-miR-30e-3p35720623357206308mer-1a3572062335720647154.00-14.00
CAediting_44325chr1_35720627_-ENSG00000092853.12ENST00000251195hsa-miR-93635720626357206338mer-1a3572062635720648159.00-22.75
CAediting_44327chr1_35720636_-ENSG00000092853.12ENST00000251195hsa-miR-483-5p35720633357206397mer-m83572063235720653140.00-14.01
CAediting_44328chr1_35720641_-ENSG00000092853.12ENST00000251195hsa-miR-412-3p35720641357206477mer-m83572064035720662144.00-16.90
CAediting_44328chr1_35720641_-ENSG00000092853.12ENST00000251195hsa-miR-6754-3p35720641357206477mer-m83572064035720662141.00-12.85
CAediting_44329chr1_35720642_-ENSG00000092853.12ENST00000251195hsa-miR-1229-3p35720641357206477mer-m83572064035720661146.00-14.05
CAediting_44329chr1_35720642_-ENSG00000092853.12ENST00000251195hsa-miR-6511a-3p35720641357206488mer-1a3572064135720662145.00-12.01
CAediting_44329chr1_35720642_-ENSG00000092853.12ENST00000251195hsa-miR-6511a-3p35720641357206488mer-1a3572064135720662145.00-12.01
CAediting_44329chr1_35720642_-ENSG00000092853.12ENST00000251195hsa-miR-6511a-3p35720641357206488mer-1a3572064135720662145.00-12.01
CAediting_44329chr1_35720642_-ENSG00000092853.12ENST00000251195hsa-miR-6511a-3p35720641357206488mer-1a3572064135720662145.00-12.01
CAediting_44329chr1_35720642_-ENSG00000092853.12ENST00000251195hsa-miR-6511b-3p35720641357206488mer-1a3572064135720663140.00-11.07
CAediting_44329chr1_35720642_-ENSG00000092853.12ENST00000251195hsa-miR-6511b-3p35720641357206488mer-1a3572064135720663140.00-11.07
CAediting_44334chr1_35720719_-ENSG00000092853.12ENST00000251195hsa-miR-513a-5p35720718357207247mer-m83572071735720734144.00-16.68
CAediting_44334chr1_35720719_-ENSG00000092853.12ENST00000251195hsa-miR-513a-5p35720718357207247mer-m83572071735720734144.00-16.68
CAediting_44334chr1_35720719_-ENSG00000092853.12ENST00000251195hsa-miR-63835720713357207197mer-1a3572071335720737159.00-35.77
CAediting_44337chr1_35720741_-ENSG00000092853.12ENST00000251195hsa-miR-607535720741357207477mer-m83572074035720761148.00-20.71
CAediting_44315chr1_35720485_-ENSG00000092853.12ENST00000251195hsa-miR-118135720485357204917mer-m83572048435720504142.00-23.08
CAediting_44316chr1_35720522_-ENSG00000092853.12ENST00000251195hsa-miR-607535720517357205248mer-1a3572051735720538148.00-21.57
CAediting_44318chr1_35720555_-ENSG00000092853.12ENST00000251195hsa-miR-443135720552357205587mer-m83572055135720572140.00-17.94
CAediting_44320chr1_35720588_-ENSG00000092853.12ENST00000251195hsa-miR-513a-5p35720587357205937mer-m83572058635720605146.00-17.14
CAediting_44320chr1_35720588_-ENSG00000092853.12ENST00000251195hsa-miR-513a-5p35720587357205937mer-m83572058635720605146.00-17.14
CAediting_44320chr1_35720588_-ENSG00000092853.12ENST00000251195hsa-miR-63835720582357205887mer-1a3572058235720606150.00-27.28
CAediting_44323chr1_35720625_-ENSG00000092853.12ENST00000251195hsa-miR-63035720619357206268mer-1a3572061935720639158.00-15.14
CAediting_44324chr1_35720626_-ENSG00000092853.12ENST00000251195hsa-miR-32535720625357206328mer-1a3572062535720647145.00-11.15
CAediting_44326chr1_35720630_-ENSG00000092853.12ENST00000251195hsa-miR-374b-3p35720625357206328mer-1a3572062535720647151.00-12.20
CAediting_44326chr1_35720630_-ENSG00000092853.12ENST00000251195hsa-miR-4756-3p35720630357206367mer-m83572062935720648151.00-16.82
CAediting_44330chr1_35720643_-ENSG00000092853.12ENST00000251195hsa-miR-23a-5p35720638357206447mer-m83572063735720659144.00-21.44
CAediting_44330chr1_35720643_-ENSG00000092853.12ENST00000251195hsa-miR-23b-5p35720638357206447mer-m83572063735720657158.00-19.64
CAediting_44331chr1_35720660_-ENSG00000092853.12ENST00000251195hsa-miR-3663-5p35720660357206667mer-m83572065935720675145.00-20.82
CAediting_44331chr1_35720660_-ENSG00000092853.12ENST00000251195hsa-miR-613135720659357206657mer-m83572065835720677143.00-17.28
CAediting_44335chr1_35720727_-ENSG00000092853.12ENST00000251195hsa-miR-463435720723357207297mer-m83572072235720740150.00-21.75
CAediting_44332chr1_35720680_-ENSG00000092853.12ENST00000251195hsa-miR-10a-5p35720677357206837mer-m83572067635720697157.00-24.16
CAediting_44332chr1_35720680_-ENSG00000092853.12ENST00000251195hsa-miR-10b-5p35720677357206837mer-m83572067635720700150.00-20.99
CAediting_44332chr1_35720680_-ENSG00000092853.12ENST00000251195hsa-miR-146b-3p35720678357206847mer-m83572067735720701155.00-29.33
CAediting_44332chr1_35720680_-ENSG00000092853.12ENST00000251195hsa-miR-1914-5p35720679357206846mer3572067835720699144.00-32.63
CAediting_44332chr1_35720680_-ENSG00000092853.12ENST00000251195hsa-miR-467935720680357206867mer-m83572067935720700148.00-16.73
CAediting_44332chr1_35720680_-ENSG00000092853.12ENST00000251195hsa-miR-467935720680357206867mer-m83572067935720700148.00-16.73
CAediting_44332chr1_35720680_-ENSG00000092853.12ENST00000251195hsa-miR-4725-5p35720675357206828mer-1a3572067535720695155.00-28.33
CAediting_44332chr1_35720680_-ENSG00000092853.12ENST00000251195hsa-miR-504-5p35720675357206828mer-1a3572067535720696154.00-23.63
CAediting_44333chr1_35720713_-ENSG00000092853.12ENST00000251195hsa-miR-371a-3p35720708357207147mer-m83572070735720729145.00-17.36

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_44334chr1_35720719_-ENSG00000092853.12ENST00000251195hsa-miR-10399-5p35720717357207237mer-m83572071635720737144-10.39
CAediting_44320chr1_35720588_-ENSG00000092853.12ENST00000251195hsa-miR-10399-5p35720586357205927mer-m83572058535720608148-9.88
CAediting_44328chr1_35720641_-ENSG00000092853.12ENST00000251195hsa-miR-193b-5p35720636357206438mer-1a3572063635720657142-13.71
CAediting_44329chr1_35720642_-ENSG00000092853.12ENST00000251195hsa-miR-193b-5p35720636357206438mer-1a3572063635720657142-13.71
CAediting_44327chr1_35720636_-ENSG00000092853.12ENST00000251195hsa-miR-317035720636357206427mer-m83572063535720656140-14.6
CAediting_44328chr1_35720641_-ENSG00000092853.12ENST00000251195hsa-miR-317035720636357206427mer-m83572063535720656140-14.6
CAediting_44337chr1_35720741_-ENSG00000092853.12ENST00000251195hsa-miR-3922-3p35720740357207456mer3572073935720761147-25.36
CAediting_44316chr1_35720522_-ENSG00000092853.12ENST00000251195hsa-miR-428435720519357205257mer-m83572051835720535151-19.23
CAediting_44317chr1_35720546_-ENSG00000092853.12ENST00000251195hsa-miR-498-5p35720546357205527mer-m83572054535720567142-9.71
CAediting_44333chr1_35720713_-ENSG00000092853.12ENST00000251195hsa-miR-5089-5p35720713357207197mer-m83572071235720734148-14.13
CAediting_44333chr1_35720713_-ENSG00000092853.12ENST00000251195hsa-miR-512-3p35720708357207147mer-m83572070735720728149-15.51
CAediting_44333chr1_35720713_-ENSG00000092853.12ENST00000251195hsa-miR-512-3p35720708357207147mer-m83572070735720728149-15.51
CAediting_44321chr1_35720594_-ENSG00000092853.12ENST00000251195hsa-miR-552-3p35720588357205958mer-1a3572058835720609147-13.59
CAediting_44334chr1_35720719_-ENSG00000092853.12ENST00000251195hsa-miR-6504-3p35720717357207237mer-m83572071635720737148-14.48
CAediting_44320chr1_35720588_-ENSG00000092853.12ENST00000251195hsa-miR-6504-3p35720586357205927mer-m83572058535720605145-8.3
CAediting_44333chr1_35720713_-ENSG00000092853.12ENST00000251195hsa-miR-6506-5p35720712357207187mer-m83572071135720733144-13.78
CAediting_44316chr1_35720522_-ENSG00000092853.12ENST00000251195hsa-miR-6511b-3p35720521357205266mer3572052035720542140-25.01
CAediting_44316chr1_35720522_-ENSG00000092853.12ENST00000251195hsa-miR-6511b-3p35720521357205266mer3572052035720542140-25.01
CAediting_44316chr1_35720522_-ENSG00000092853.12ENST00000251195hsa-miR-6784-3p35720521357205266mer3572052035720542143-26.64
CAediting_44335chr1_35720727_-ENSG00000092853.12ENST00000251195hsa-miR-6807-5p35720727357207337mer-m83572072635720748144-20.35
CAediting_44326chr1_35720630_-ENSG00000092853.12ENST00000251195hsa-miR-6832-5p35720629357206357mer-m83572062835720650142-15.43
CAediting_44327chr1_35720636_-ENSG00000092853.12ENST00000251195hsa-miR-6855-5p35720636357206427mer-m83572063535720659145-17.86
CAediting_44328chr1_35720641_-ENSG00000092853.12ENST00000251195hsa-miR-6855-5p35720636357206427mer-m83572063535720659145-17.86
CAediting_44319chr1_35720578_-ENSG00000092853.12ENST00000251195hsa-miR-6869-5p35720574357205807mer-m83572057335720595146-17.48
CAediting_44336chr1_35720737_-ENSG00000092853.12ENST00000251195hsa-miR-6872-3p35720734357207407mer-m83572073335720753145-20.55
CAediting_44327chr1_35720636_-ENSG00000092853.12ENST00000251195hsa-miR-6890-5p35720635357206417mer-m83572063435720654142-13.42
CAediting_44334chr1_35720719_-ENSG00000092853.12ENST00000251195hsa-miR-7151-3p35720718357207258mer-1a3572071835720738144-16.51
CAediting_44321chr1_35720594_-ENSG00000092853.12ENST00000251195hsa-miR-76435720590357205967mer-m83572058935720613146-19.03

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CLSPN

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000251195.8protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_44315ENST00000251195.8chr1_35720485_--1368.10-1368.10-1392.70
CAediting_44316ENST00000251195.8chr1_35720522_--1370.40-1368.10-1392.70
CAediting_44317ENST00000251195.8chr1_35720546_--1371.20-1368.10-1392.70
CAediting_44318ENST00000251195.8chr1_35720555_--1368.60-1368.10-1392.70
CAediting_44319ENST00000251195.8chr1_35720578_--1368.00-1368.10-1392.70
CAediting_44320ENST00000251195.8chr1_35720588_--1368.30-1368.10-1392.70
CAediting_44321ENST00000251195.8chr1_35720594_--1368.80-1368.10-1392.70
CAediting_44322ENST00000251195.8chr1_35720623_--1368.90-1368.10-1392.70
CAediting_44323ENST00000251195.8chr1_35720625_--1369.00-1368.10-1392.70
CAediting_44324ENST00000251195.8chr1_35720626_--1368.10-1368.10-1392.70
CAediting_44325ENST00000251195.8chr1_35720627_--1368.20-1368.10-1392.70
CAediting_44326ENST00000251195.8chr1_35720630_--1371.60-1368.10-1392.70
CAediting_44327ENST00000251195.8chr1_35720636_--1365.60-1368.10-1392.70
CAediting_44328ENST00000251195.8chr1_35720641_--1367.70-1368.10-1392.70
CAediting_44329ENST00000251195.8chr1_35720642_--1369.30-1368.10-1392.70
CAediting_44330ENST00000251195.8chr1_35720643_--1369.40-1368.10-1392.70
CAediting_44331ENST00000251195.8chr1_35720660_--1368.30-1368.10-1392.70
CAediting_44332ENST00000251195.8chr1_35720680_--1368.90-1368.10-1392.70
CAediting_44333ENST00000251195.8chr1_35720713_--1367.30-1368.10-1392.70
CAediting_44334ENST00000251195.8chr1_35720719_--1369.60-1368.10-1392.70
CAediting_44335ENST00000251195.8chr1_35720727_--1367.80-1368.10-1392.70
CAediting_44336ENST00000251195.8chr1_35720737_--1372.60-1368.10-1392.70
CAediting_44337ENST00000251195.8chr1_35720741_--1368.00-1368.10-1392.70

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Relation with ADAR for CLSPN

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for CLSPN

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CLSPN

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for CLSPN

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CLSPN

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource