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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CX3CL1 (CAeditome ID:6376) |
Gene summary for CX3CL1 |
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Gene information | Gene symbol | CX3CL1 | Gene ID | 6376 |
Gene name | C-X3-C motif chemokine ligand 1 | |
Synonyms | ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin | |
Cytomap | 16q21 | |
Type of gene | protein-coding | |
Description | fractalkineC-X3-C motif chemokine 1CX3C membrane-anchored chemokinechemokine (C-X3-C motif) ligand 1small inducible cytokine subfamily D (Cys-X3-Cys), member 1 (fractalkine, neurotactin)small inducible cytokine subfamily D (Cys-X3-Cys), member-1smal | |
Modification date | 20210524 | |
UniProtAcc | P78423 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CX3CL1 | GO:0005178 | Fractalkine | 23125415 |
CX3CL1 | GO:0008009 | Fractalkine | 21829356 |
CX3CL1 | GO:0031737 | Fractalkine | 10415068 |
CX3CL1 | GO:0031737 | Fractalkine | 23125415 |
CX3CL1 | GO:0006935 | Fractalkine | 21829356 |
CX3CL1 | GO:0030336 | Fractalkine | 25435433 |
CX3CL1 | GO:0031664 | Fractalkine | 10652441 |
CX3CL1 | GO:0032720 | Fractalkine | 10652441 |
CX3CL1 | GO:0051041 | Fractalkine | 12714508 |
CX3CL1 | GO:0060326 | Fractalkine | 10415068 |
CX3CL1 | GO:0070098 | Fractalkine | 10415068 |
CX3CL1 | GO:1904141 | Fractalkine | 10415068 |
CX3CL1 | GO:0005576 | Fractalkine | 10415068 |
CX3CL1 | GO:0005576 | Fractalkine | 12714508 |
CX3CL1 | GO:0009986 | Fractalkine | 12714508 |
CX3CL1 | GO:0016020 | Fractalkine | 10899174 |
CX3CL1 | GO:0016021 | Fractalkine | 12714508 |
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RNA A-to-I events for CX3CL1 |
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CAediting_1117958(57375047, +), CAediting_1117959(57375154, +), CAediting_1117960(57378280, +), CAediting_1117961(57378320, +), CAediting_1117962(57378349, +), CAediting_1117963(57378350, +), CAediting_1117964(57378367, +), CAediting_1117965(57378369, +), CAediting_1117966(57378533, +), CAediting_1117967(57378581, +), CAediting_1117968(57378593, +), CAediting_1117969(57378603, +), CAediting_1117970(57378604, +), CAediting_1117971(57378605, +), CAediting_1117972(57378630, +), CAediting_1117973(57378654, +), CAediting_1117974(57378666, +), CAediting_1117975(57378673, +), CAediting_1117976(57378684, +), CAediting_1117977(57378685, +), CAediting_1117978(57378738, +), CAediting_1117979(57378807, +), CAediting_1117980(57379063, +), CAediting_1117981(57379112, +), CAediting_1117982(57379126, +), CAediting_1117983(57379143, +), CAediting_1117984(57379151, +), CAediting_1117985(57379205, +), CAediting_1117986(57382593, +), |
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RNA editing positional annotations for CX3CL1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_1117986 | chr16_57382593_+ | nonsynonymous SNV | ENST00000006053.6 | c.A755G | p.Q252R | D | B | N |
CAediting_1117986 | chr16_57382593_+ | nonsynonymous SNV | ENST00000563383.1 | c.A773G | p.Q258R | D | B | N |
CAediting_1117986 | chr16_57382593_+ | nonsynonymous SNV | ENST00000565912.1 | c.A641G | p.Q214R | D | B | N |
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CAeditome ID | Position | Variant type |
CAediting_1117958 | chr16_57375047_+ | intronic |
CAediting_1117959 | chr16_57375154_+ | intronic |
CAediting_1117960 | chr16_57378280_+ | UTR5 |
CAediting_1117961 | chr16_57378320_+ | UTR5 |
CAediting_1117962 | chr16_57378349_+ | UTR5 |
CAediting_1117963 | chr16_57378350_+ | UTR5 |
CAediting_1117964 | chr16_57378367_+ | UTR5 |
CAediting_1117965 | chr16_57378369_+ | UTR5 |
CAediting_1117966 | chr16_57378533_+ | UTR5 |
CAediting_1117967 | chr16_57378581_+ | UTR5 |
CAediting_1117968 | chr16_57378593_+ | UTR5 |
CAediting_1117969 | chr16_57378603_+ | UTR5 |
CAediting_1117970 | chr16_57378604_+ | UTR5 |
CAediting_1117971 | chr16_57378605_+ | UTR5 |
CAediting_1117972 | chr16_57378630_+ | UTR5 |
CAediting_1117973 | chr16_57378654_+ | UTR5 |
CAediting_1117974 | chr16_57378666_+ | UTR5 |
CAediting_1117975 | chr16_57378673_+ | UTR5 |
CAediting_1117976 | chr16_57378684_+ | UTR5 |
CAediting_1117977 | chr16_57378685_+ | UTR5 |
CAediting_1117978 | chr16_57378738_+ | UTR5 |
CAediting_1117979 | chr16_57378807_+ | UTR5 |
CAediting_1117980 | chr16_57379063_+ | UTR5 |
CAediting_1117981 | chr16_57379112_+ | UTR5 |
CAediting_1117982 | chr16_57379126_+ | UTR5 |
CAediting_1117983 | chr16_57379143_+ | UTR5 |
CAediting_1117984 | chr16_57379151_+ | UTR5 |
CAediting_1117985 | chr16_57379205_+ | UTR5 |
CAediting_1117986 | chr16_57382593_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1117958 | chr16_57375047_+ | SINE | Alu | AluSx |
CAediting_1117959 | chr16_57375154_+ | SINE | Alu | AluSx |
CAediting_1117960 | chr16_57378280_+ | SINE | Alu | AluJr |
CAediting_1117961 | chr16_57378320_+ | SINE | Alu | AluJr |
CAediting_1117962 | chr16_57378349_+ | SINE | Alu | AluJr |
CAediting_1117963 | chr16_57378350_+ | SINE | Alu | AluJr |
CAediting_1117964 | chr16_57378367_+ | SINE | Alu | AluJr |
CAediting_1117965 | chr16_57378369_+ | SINE | Alu | AluJr |
CAediting_1117966 | chr16_57378533_+ | SINE | Alu | AluSx |
CAediting_1117967 | chr16_57378581_+ | SINE | Alu | AluSx |
CAediting_1117968 | chr16_57378593_+ | SINE | Alu | AluSx |
CAediting_1117969 | chr16_57378603_+ | SINE | Alu | AluSx |
CAediting_1117970 | chr16_57378604_+ | SINE | Alu | AluSx |
CAediting_1117971 | chr16_57378605_+ | SINE | Alu | AluSx |
CAediting_1117972 | chr16_57378630_+ | SINE | Alu | AluSx |
CAediting_1117973 | chr16_57378654_+ | SINE | Alu | AluSx |
CAediting_1117974 | chr16_57378666_+ | SINE | Alu | AluSx |
CAediting_1117975 | chr16_57378673_+ | SINE | Alu | AluSx |
CAediting_1117976 | chr16_57378684_+ | SINE | Alu | AluSx |
CAediting_1117977 | chr16_57378685_+ | SINE | Alu | AluSx |
CAediting_1117978 | chr16_57378738_+ | SINE | Alu | AluSx |
CAediting_1117979 | chr16_57378807_+ | SINE | Alu | AluJr |
CAediting_1117980 | chr16_57379063_+ | SINE | Alu | AluSp |
CAediting_1117981 | chr16_57379112_+ | SINE | Alu | AluSp |
CAediting_1117982 | chr16_57379126_+ | SINE | Alu | AluSp |
CAediting_1117983 | chr16_57379143_+ | SINE | Alu | AluSp |
CAediting_1117984 | chr16_57379151_+ | SINE | Alu | AluSp |
CAediting_1117985 | chr16_57379205_+ | SINE | Alu | AluSp |
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RNA A-to-I editing events in the alternative splicing sites for CX3CL1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CX3CL1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CX3CL1 |
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The effects of the RNA editing to the miRNA binding sites for CX3CL1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000006210.6 | ENST00000563383 | hsa-miR-605-3p | 57384251 | 57384257 | 7mer-m8 | 57384237 | 57384258 | 140 | -19.25 |
CAediting_980496 | chr14_31014685_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-624-3p | 57384825 | 57384831 | 7mer-m8 | 57384812 | 57384832 | 143 | -22.43 |
CAediting_748296 | chr10_51299626_+ | ENSG00000006210.6 | ENST00000565912 | hsa-miR-605-3p | 57384251 | 57384257 | 7mer-m8 | 57384237 | 57384258 | 140 | -19.25 |
CAediting_980496 | chr14_31014685_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-624-3p | 57384825 | 57384831 | 7mer-m8 | 57384812 | 57384832 | 143 | -22.43 |
CAediting_1054808 | chr15_66496985_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-4512 | 57383992 | 57383998 | 7mer-m8 | 57383978 | 57383999 | 145 | -20.6 |
CAediting_1368054 | chr19_46709310_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-320e | 57384619 | 57384625 | 7mer-m8 | 57384609 | 57384626 | 155 | -20.65 |
CAediting_1399425 | chr20_1392958_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-6869-5p | 57384565 | 57384571 | 7mer-m8 | 57384551 | 57384572 | 144 | -19.29 |
CAediting_228905 | chr2_188297554_+ | ENSG00000006210.6 | ENST00000563383 | hsa-miR-561-3p | 57383264 | 57383270 | 7mer-m8 | 57383250 | 57383271 | 140 | -6.68 |
CAediting_442554 | chr5_154685830_+ | ENSG00000006210.6 | ENST00000563383 | hsa-miR-1303 | 57384904 | 57384910 | 7mer-m8 | 57384890 | 57384911 | 140 | -18.14 |
CAediting_1054808 | chr15_66496985_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-4512 | 57383992 | 57383998 | 7mer-m8 | 57383978 | 57383999 | 145 | -20.6 |
CAediting_1368054 | chr19_46709310_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-320e | 57384619 | 57384625 | 7mer-m8 | 57384609 | 57384626 | 155 | -20.65 |
CAediting_1399425 | chr20_1392958_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-6869-5p | 57384565 | 57384571 | 7mer-m8 | 57384551 | 57384572 | 144 | -19.29 |
CAediting_228905 | chr2_188297554_+ | ENSG00000006210.6 | ENST00000565912 | hsa-miR-561-3p | 57383264 | 57383270 | 7mer-m8 | 57383250 | 57383271 | 140 | -6.68 |
CAediting_442554 | chr5_154685830_+ | ENSG00000006210.6 | ENST00000565912 | hsa-miR-1303 | 57384904 | 57384910 | 7mer-m8 | 57384890 | 57384911 | 140 | -18.14 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_86358 | chr1_109598906_+ | ENSG00000006210.6 | ENST00000563383 | hsa-miR-197-5p | 57384564 | 57384571 | 8mer-1a | 57384547 | 57384571 | 148 | -26.72 |
CAediting_1054808 | chr15_66496985_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-4512 | 57383414 | 57383420 | 7mer-m8 | 57383401 | 57383421 | 145 | -19.12 |
CAediting_1054808 | chr15_66496985_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-4512 | 57383799 | 57383805 | 7mer-m8 | 57383785 | 57383806 | 150 | -17.62 |
CAediting_1524209 | chrX_134546392_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-503-5p | 57383276 | 57383281 | 6mer | 57383259 | 57383282 | 151 | -19.77 |
CAediting_1351755 | chr19_40282625_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-641 | 57383547 | 57383553 | 7mer-m8 | 57383531 | 57383554 | 140 | -16.12 |
CAediting_468389 | chr6_31355314_- | ENSG00000006210.6 | ENST00000563383 | hsa-miR-6891-5p | 57384844 | 57384850 | 7mer-m8 | 57384833 | 57384851 | 143 | -18.89 |
CAediting_86358 | chr1_109598906_+ | ENSG00000006210.6 | ENST00000565912 | hsa-miR-197-5p | 57384564 | 57384571 | 8mer-1a | 57384547 | 57384571 | 148 | -26.72 |
CAediting_1054808 | chr15_66496985_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-4512 | 57383414 | 57383420 | 7mer-m8 | 57383401 | 57383421 | 145 | -19.12 |
CAediting_1054808 | chr15_66496985_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-4512 | 57383799 | 57383805 | 7mer-m8 | 57383785 | 57383806 | 150 | -17.62 |
CAediting_1524209 | chrX_134546392_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-503-5p | 57383276 | 57383281 | 6mer | 57383259 | 57383282 | 151 | -19.77 |
CAediting_1351755 | chr19_40282625_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-641 | 57383547 | 57383553 | 7mer-m8 | 57383531 | 57383554 | 140 | -16.12 |
CAediting_468389 | chr6_31355314_- | ENSG00000006210.6 | ENST00000565912 | hsa-miR-6891-5p | 57384844 | 57384850 | 7mer-m8 | 57384833 | 57384851 | 143 | -18.89 |
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The effects of the RNA editing to the stability of the RNA structures for CX3CL1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CX3CL1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for CX3CL1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CX3CL1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CX3CL1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CX3CL1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CX3CL1 | C0002152 | Alloxan Diabetes | 1 | CTD_human |
CX3CL1 | C0011853 | Diabetes Mellitus, Experimental | 1 | CTD_human |
CX3CL1 | C0020517 | Hypersensitivity | 1 | CTD_human |
CX3CL1 | C0032285 | Pneumonia | 1 | CTD_human |
CX3CL1 | C0032300 | Lobar Pneumonia | 1 | CTD_human |
CX3CL1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
CX3CL1 | C0038433 | Streptozotocin Diabetes | 1 | CTD_human |
CX3CL1 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
CX3CL1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
CX3CL1 | C0887898 | Experimental Lung Inflammation | 1 | CTD_human |
CX3CL1 | C1527304 | Allergic Reaction | 1 | CTD_human |
CX3CL1 | C3714636 | Pneumonitis | 1 | CTD_human |