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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: XCL1 (CAeditome ID:6375) |
Gene summary for XCL1 |
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Gene information | Gene symbol | XCL1 | Gene ID | 6375 |
Gene name | X-C motif chemokine ligand 1 | |
Synonyms | ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 | |
Cytomap | 1q24.2 | |
Type of gene | protein-coding | |
Description | lymphotactinSCM-1-alphaXC chemokine ligand 1c motif chemokine 1chemokine (C motif) ligand 1cytokine SCM-1lymphotaxinsingle cysteine motif 1asmall inducible cytokine subfamily C, member 1 (lymphotactin)small-inducible cytokine C1 | |
Modification date | 20210518 | |
UniProtAcc | P47992 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
XCL1 | GO:0008009 | Lymphotactin | 7602097 |
XCL1 | GO:0042379 | Lymphotactin | 9632725 |
XCL1 | GO:0042803 | Lymphotactin | 11889129 |
XCL1 | GO:0001916 | Lymphotactin | 18832695 |
XCL1 | GO:0002725 | Lymphotactin | 10887101 |
XCL1 | GO:0007267 | Lymphotactin | 7602097 |
XCL1 | GO:0009615 | Lymphotactin | 14734774 |
XCL1 | GO:0010820 | Lymphotactin | 7602097 |
XCL1 | GO:0032689 | Lymphotactin | 10887101 |
XCL1 | GO:0032703 | Lymphotactin | 10887101 |
XCL1 | GO:0032733 | Lymphotactin | 18832695 |
XCL1 | GO:0035782 | Lymphotactin | 9029087 |
XCL1 | GO:0043433 | Lymphotactin | 10887101 |
XCL1 | GO:0045892 | Lymphotactin | 10887101 |
XCL1 | GO:0050727 | Lymphotactin | 18832695 |
XCL1 | GO:0051281 | Lymphotactin | 7602097 |
XCL1 | GO:0071636 | Lymphotactin | 18832695 |
XCL1 | GO:0071663 | Lymphotactin | 18832695 |
XCL1 | GO:2000503 | Lymphotactin | 9029087 |
XCL1 | GO:2000513 | Lymphotactin | 18832695 |
XCL1 | GO:2000518 | Lymphotactin | 10887101 |
XCL1 | GO:2000562 | Lymphotactin | 10887101 |
XCL1 | GO:2000566 | Lymphotactin | 10887101 |
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RNA A-to-I events for XCL1 |
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CAediting_119954(168576623, +), CAediting_119955(168576634, +), CAediting_119956(168576641, +), |
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RNA editing positional annotations for XCL1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_119956 | chr1_168576641_+ | nonsynonymous SNV | ENST00000367818.3 | c.A4G | p.R2G | D | P | N |
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CAeditome ID | Position | Variant type |
CAediting_119954 | chr1_168576623_+ | UTR5 |
CAediting_119955 | chr1_168576634_+ | UTR5 |
CAediting_119956 | chr1_168576641_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for XCL1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for XCL1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for XCL1 |
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The effects of the RNA editing to the miRNA binding sites for XCL1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for XCL1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000367818.3 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_119954 | ENST00000367818.3 | chr1_168576623_+ | -341.80 | -340.80 | -341.70 |
CAediting_119955 | ENST00000367818.3 | chr1_168576634_+ | -341.60 | -340.80 | -341.70 |
CAediting_119956 | ENST00000367818.3 | chr1_168576641_+ | -339.90 | -340.80 | -341.70 |
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Relation with ADAR for XCL1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for XCL1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for XCL1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for XCL1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for XCL1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |