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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: RPS25 (CAeditome ID:6230) |
Gene summary for RPS25 |
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Gene information | Gene symbol | RPS25 | Gene ID | 6230 |
Gene name | ribosomal protein S25 | |
Synonyms | S25 | |
Cytomap | 11q23.3 | |
Type of gene | protein-coding | |
Description | 40S ribosomal protein S25small ribosomal subunit protein eS25 | |
Modification date | 20210518 | |
UniProtAcc | P62851 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
RPS25 | GO:0003735 | 40S ribosomal protein S25 | 23636399 |
RPS25 | GO:0005634 | 40S ribosomal protein S25 | 22720776 |
RPS25 | GO:0005730 | 40S ribosomal protein S25 | 10050887 |
RPS25 | GO:0005840 | 40S ribosomal protein S25 | 1748303 |
RPS25 | GO:0014069 | 40S ribosomal protein S25 | 21170055 |
RPS25 | GO:0022626 | 40S ribosomal protein S25 | 23636399 |
RPS25 | GO:0022627 | 40S ribosomal protein S25 | 8706699 |
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RNA A-to-I events for RPS25 |
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CAediting_856132(119016009, -), CAediting_856133(119016028, -), CAediting_856134(119016029, -), CAediting_856135(119016096, -), CAediting_856136(119016108, -), CAediting_856137(119016118, -), CAediting_856138(119016120, -), CAediting_856139(119016122, -), CAediting_856140(119016160, -), CAediting_856141(119016163, -), CAediting_856142(119016164, -), CAediting_856143(119016166, -), CAediting_856144(119016169, -), CAediting_856145(119016176, -), CAediting_856146(119016179, -), CAediting_856147(119016188, -), CAediting_856148(119016204, -), CAediting_856149(119016216, -), CAediting_856150(119016224, -), CAediting_856151(119016229, -), CAediting_856152(119016246, -), CAediting_856153(119016253, -), CAediting_856154(119016278, -), CAediting_856155(119016334, -), CAediting_856156(119016487, -), CAediting_856157(119016489, -), CAediting_856158(119016494, -), CAediting_856159(119016501, -), CAediting_856160(119016511, -), CAediting_856161(119016525, -), CAediting_856162(119016531, -), CAediting_856163(119016672, -), CAediting_856164(119016698, -), CAediting_856165(119016703, -), CAediting_856166(119016720, -), CAediting_856167(119016728, -), CAediting_856168(119016739, -), CAediting_856169(119016746, -), CAediting_856170(119016759, -), CAediting_856171(119016763, -), CAediting_856172(119016768, -), CAediting_856173(119016769, -), CAediting_856174(119016777, -), CAediting_856175(119016779, -), CAediting_856176(119016789, -), CAediting_856177(119016795, -), CAediting_856178(119016799, -), CAediting_856179(119016800, -), CAediting_856180(119016805, -), CAediting_856181(119016815, -), CAediting_856182(119016817, -), CAediting_856183(119016835, -), CAediting_856184(119016838, -), CAediting_856185(119016840, -), CAediting_856186(119016841, -), CAediting_856187(119016842, -), CAediting_856188(119016846, -), CAediting_856189(119016849, -), CAediting_856190(119016873, -), CAediting_856191(119016878, -), CAediting_856192(119016886, -), CAediting_856193(119016894, -), CAediting_856194(119016895, -), CAediting_856195(119016897, -), |
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RNA editing positional annotations for RPS25 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_856132 | chr11_119016009_- | ncRNA_intronic |
CAediting_856133 | chr11_119016028_- | ncRNA_intronic |
CAediting_856134 | chr11_119016029_- | ncRNA_intronic |
CAediting_856135 | chr11_119016096_- | ncRNA_intronic |
CAediting_856136 | chr11_119016108_- | ncRNA_intronic |
CAediting_856137 | chr11_119016118_- | ncRNA_intronic |
CAediting_856138 | chr11_119016120_- | ncRNA_intronic |
CAediting_856139 | chr11_119016122_- | ncRNA_intronic |
CAediting_856140 | chr11_119016160_- | ncRNA_intronic |
CAediting_856141 | chr11_119016163_- | ncRNA_intronic |
CAediting_856142 | chr11_119016164_- | ncRNA_intronic |
CAediting_856143 | chr11_119016166_- | ncRNA_intronic |
CAediting_856144 | chr11_119016169_- | ncRNA_intronic |
CAediting_856145 | chr11_119016176_- | ncRNA_intronic |
CAediting_856146 | chr11_119016179_- | ncRNA_intronic |
CAediting_856147 | chr11_119016188_- | ncRNA_intronic |
CAediting_856148 | chr11_119016204_- | ncRNA_intronic |
CAediting_856149 | chr11_119016216_- | ncRNA_intronic |
CAediting_856150 | chr11_119016224_- | ncRNA_intronic |
CAediting_856151 | chr11_119016229_- | ncRNA_intronic |
CAediting_856152 | chr11_119016246_- | ncRNA_intronic |
CAediting_856153 | chr11_119016253_- | ncRNA_intronic |
CAediting_856154 | chr11_119016278_- | ncRNA_intronic |
CAediting_856155 | chr11_119016334_- | ncRNA_intronic |
CAediting_856156 | chr11_119016487_- | ncRNA_intronic |
CAediting_856157 | chr11_119016489_- | ncRNA_intronic |
CAediting_856158 | chr11_119016494_- | ncRNA_intronic |
CAediting_856159 | chr11_119016501_- | ncRNA_intronic |
CAediting_856160 | chr11_119016511_- | ncRNA_intronic |
CAediting_856161 | chr11_119016525_- | ncRNA_intronic |
CAediting_856162 | chr11_119016531_- | ncRNA_intronic |
CAediting_856163 | chr11_119016672_- | ncRNA_intronic |
CAediting_856164 | chr11_119016698_- | ncRNA_intronic |
CAediting_856165 | chr11_119016703_- | ncRNA_intronic |
CAediting_856166 | chr11_119016720_- | ncRNA_intronic |
CAediting_856167 | chr11_119016728_- | ncRNA_intronic |
CAediting_856168 | chr11_119016739_- | ncRNA_intronic |
CAediting_856169 | chr11_119016746_- | ncRNA_intronic |
CAediting_856170 | chr11_119016759_- | ncRNA_intronic |
CAediting_856171 | chr11_119016763_- | ncRNA_intronic |
CAediting_856172 | chr11_119016768_- | ncRNA_intronic |
CAediting_856173 | chr11_119016769_- | ncRNA_intronic |
CAediting_856174 | chr11_119016777_- | ncRNA_intronic |
CAediting_856175 | chr11_119016779_- | ncRNA_intronic |
CAediting_856176 | chr11_119016789_- | ncRNA_intronic |
CAediting_856177 | chr11_119016795_- | ncRNA_intronic |
CAediting_856178 | chr11_119016799_- | ncRNA_intronic |
CAediting_856179 | chr11_119016800_- | ncRNA_intronic |
CAediting_856180 | chr11_119016805_- | ncRNA_intronic |
CAediting_856181 | chr11_119016815_- | ncRNA_intronic |
CAediting_856182 | chr11_119016817_- | ncRNA_intronic |
CAediting_856183 | chr11_119016835_- | ncRNA_intronic |
CAediting_856184 | chr11_119016838_- | ncRNA_intronic |
CAediting_856185 | chr11_119016840_- | ncRNA_intronic |
CAediting_856186 | chr11_119016841_- | ncRNA_intronic |
CAediting_856187 | chr11_119016842_- | ncRNA_intronic |
CAediting_856188 | chr11_119016846_- | ncRNA_intronic |
CAediting_856189 | chr11_119016849_- | ncRNA_intronic |
CAediting_856190 | chr11_119016873_- | ncRNA_intronic |
CAediting_856191 | chr11_119016878_- | ncRNA_intronic |
CAediting_856192 | chr11_119016886_- | ncRNA_intronic |
CAediting_856193 | chr11_119016894_- | ncRNA_intronic |
CAediting_856194 | chr11_119016895_- | ncRNA_intronic |
CAediting_856195 | chr11_119016897_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_856132 | chr11_119016009_- | SINE | Alu | AluSz |
CAediting_856133 | chr11_119016028_- | SINE | Alu | AluSz |
CAediting_856134 | chr11_119016029_- | SINE | Alu | AluSz |
CAediting_856135 | chr11_119016096_- | SINE | Alu | AluSz |
CAediting_856136 | chr11_119016108_- | SINE | Alu | AluSz |
CAediting_856137 | chr11_119016118_- | SINE | Alu | AluSz |
CAediting_856138 | chr11_119016120_- | SINE | Alu | AluSz |
CAediting_856139 | chr11_119016122_- | SINE | Alu | AluSz |
CAediting_856140 | chr11_119016160_- | SINE | Alu | AluSz |
CAediting_856141 | chr11_119016163_- | SINE | Alu | AluSz |
CAediting_856142 | chr11_119016164_- | SINE | Alu | AluSz |
CAediting_856143 | chr11_119016166_- | SINE | Alu | AluSz |
CAediting_856144 | chr11_119016169_- | SINE | Alu | AluSz |
CAediting_856145 | chr11_119016176_- | SINE | Alu | AluSz |
CAediting_856146 | chr11_119016179_- | SINE | Alu | AluSz |
CAediting_856147 | chr11_119016188_- | SINE | Alu | AluSz |
CAediting_856148 | chr11_119016204_- | SINE | Alu | AluSz |
CAediting_856149 | chr11_119016216_- | SINE | Alu | AluSz |
CAediting_856150 | chr11_119016224_- | SINE | Alu | AluSz |
CAediting_856151 | chr11_119016229_- | SINE | Alu | AluSz |
CAediting_856152 | chr11_119016246_- | SINE | Alu | AluSz |
CAediting_856153 | chr11_119016253_- | SINE | Alu | AluSz |
CAediting_856154 | chr11_119016278_- | SINE | Alu | AluSz |
CAediting_856155 | chr11_119016334_- | SINE | Alu | FLAM_C |
CAediting_856156 | chr11_119016487_- | SINE | Alu | AluJb |
CAediting_856157 | chr11_119016489_- | SINE | Alu | AluJb |
CAediting_856158 | chr11_119016494_- | SINE | Alu | AluJb |
CAediting_856159 | chr11_119016501_- | SINE | Alu | AluJb |
CAediting_856160 | chr11_119016511_- | SINE | Alu | AluJb |
CAediting_856161 | chr11_119016525_- | SINE | Alu | AluJb |
CAediting_856162 | chr11_119016531_- | SINE | Alu | AluJb |
CAediting_856163 | chr11_119016672_- | SINE | Alu | AluSx |
CAediting_856164 | chr11_119016698_- | SINE | Alu | AluSx |
CAediting_856165 | chr11_119016703_- | SINE | Alu | AluSx |
CAediting_856166 | chr11_119016720_- | SINE | Alu | AluSx |
CAediting_856167 | chr11_119016728_- | SINE | Alu | AluSx |
CAediting_856168 | chr11_119016739_- | SINE | Alu | AluSx |
CAediting_856169 | chr11_119016746_- | SINE | Alu | AluSx |
CAediting_856170 | chr11_119016759_- | SINE | Alu | AluSx |
CAediting_856171 | chr11_119016763_- | SINE | Alu | AluSx |
CAediting_856172 | chr11_119016768_- | SINE | Alu | AluSx |
CAediting_856173 | chr11_119016769_- | SINE | Alu | AluSx |
CAediting_856174 | chr11_119016777_- | SINE | Alu | AluSx |
CAediting_856175 | chr11_119016779_- | SINE | Alu | AluSx |
CAediting_856176 | chr11_119016789_- | SINE | Alu | AluSx |
CAediting_856177 | chr11_119016795_- | SINE | Alu | AluSx |
CAediting_856178 | chr11_119016799_- | SINE | Alu | AluSx |
CAediting_856179 | chr11_119016800_- | SINE | Alu | AluSx |
CAediting_856180 | chr11_119016805_- | SINE | Alu | AluSx |
CAediting_856181 | chr11_119016815_- | SINE | Alu | AluSx |
CAediting_856182 | chr11_119016817_- | SINE | Alu | AluSx |
CAediting_856183 | chr11_119016835_- | SINE | Alu | AluSx |
CAediting_856184 | chr11_119016838_- | SINE | Alu | AluSx |
CAediting_856185 | chr11_119016840_- | SINE | Alu | AluSx |
CAediting_856186 | chr11_119016841_- | SINE | Alu | AluSx |
CAediting_856187 | chr11_119016842_- | SINE | Alu | AluSx |
CAediting_856188 | chr11_119016846_- | SINE | Alu | AluSx |
CAediting_856189 | chr11_119016849_- | SINE | Alu | AluSx |
CAediting_856190 | chr11_119016873_- | SINE | Alu | AluSx |
CAediting_856191 | chr11_119016878_- | SINE | Alu | AluSx |
CAediting_856192 | chr11_119016886_- | SINE | Alu | AluSx |
CAediting_856193 | chr11_119016894_- | SINE | Alu | AluSx |
CAediting_856194 | chr11_119016895_- | SINE | Alu | AluSx |
CAediting_856195 | chr11_119016897_- | SINE | Alu | AluSx |
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RNA A-to-I editing events in the alternative splicing sites for RPS25 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPS25 |
![]() * The grey color means N/A. |
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CESC.CAediting_856143.ENSG00000118181.RPS25.png ![]() |
COAD.CAediting_856144.ENSG00000118181.RPS25.png ![]() |
SKCM.CAediting_856141.ENSG00000118181.RPS25.png ![]() |
SKCM.CAediting_856143.ENSG00000118181.RPS25.png ![]() |
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Protein coding region RNA A-to-I editings for RPS25 |
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The effects of the RNA editing to the miRNA binding sites for RPS25 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_228905 | chr2_188297554_+ | ENSG00000118181.9 | ENST00000532567 | hsa-miR-561-3p | 119017470 | 119017476 | 7mer-m8 | 119017469 | 119017490 | 149 | -12.11 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for RPS25 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for RPS25 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LUAD | CAediting_856141 | chr11_119016163_- | . | . | 0.0297208755840689 | 0.218600833082258 | . | . |
BLCA | CAediting_856144 | chr11_119016169_- | 0.00352135501018537 | 0.339566665653759 | . | . | . | . |
PRAD | CAediting_856144 | chr11_119016169_- | 0.0385659486917266 | 0.27008435842858 | . | . | . | . |
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Relation with cancer stages for RPS25 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BLCA | pathologic_stage | CAediting_856143 | chr11_119016166_- | 0.0196120308116681 | 0.22026829574551 |
ESCA | pathologic_stage | CAediting_856141 | chr11_119016163_- | 0.00434961217743824 | 0.372275525394191 |
KIRC | pathologic_stage | CAediting_856141 | chr11_119016163_- | 0.00921487871526006 | 0.293069648194326 |
LUSC | pathologic_stage | CAediting_856141 | chr11_119016163_- | 0.0414307972991967 | 0.198442471571415 |
LUSC | pathologic_stage | CAediting_856143 | chr11_119016166_- | 0.0161200232280937 | 0.206771170184535 |
OV | clinical_stage | CAediting_856143 | chr11_119016166_- | 0.0130798648324805 | 0.183645598565827 |
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Relation with survival for RPS25 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
KIRC | CAediting_856185 | chr11_119016840_- | 0.018487462419345 | 0.0101416 | 23.4659 |
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RelatedDrugs for RPS25 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPS25 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |