![]() |
||||||
|
![]() | |
![]() | |
![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
![]() | |
![]() | |
![]() | The effects of the RNA editing to the stability of the RNA structures |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Editing gene: RPS13 (CAeditome ID:6207) |
Gene summary for RPS13 |
![]() |
Gene information | Gene symbol | RPS13 | Gene ID | 6207 |
Gene name | ribosomal protein S13 | |
Synonyms | S13 | |
Cytomap | 11p15.1 | |
Type of gene | protein-coding | |
Description | 40S ribosomal protein S13small ribosomal subunit protein uS15 | |
Modification date | 20210518 | |
UniProtAcc | P62277 | |
Context |
![]() |
Gene | GO ID | GO term | PubMed ID |
RPS13 | GO:0003729 | 40S ribosomal protein S13 | 17881366 |
RPS13 | GO:0003735 | 40S ribosomal protein S13 | 23636399 |
RPS13 | GO:0048027 | 40S ribosomal protein S13 | 16213212 |
RPS13 | GO:0033119 | 40S ribosomal protein S13 | 17881366 |
RPS13 | GO:0005634 | 40S ribosomal protein S13 | 17881366 |
RPS13 | GO:0005730 | 40S ribosomal protein S13 | 17881366 |
RPS13 | GO:0014069 | 40S ribosomal protein S13 | 21170055 |
RPS13 | GO:0022626 | 40S ribosomal protein S13 | 23636399 |
RPS13 | GO:0022627 | 40S ribosomal protein S13 | 8706699 |
Top |
RNA A-to-I events for RPS13 |
![]() |
![]() |
![]() |
![]() |
![]() |
CAediting_800521(17076184, -), CAediting_800522(17076195, -), CAediting_800523(17076264, -), CAediting_800524(17076300, -), CAediting_800525(17076328, -), CAediting_800526(17076407, -), CAediting_800527(17076418, -), CAediting_800528(17076434, -), CAediting_800529(17076437, -), CAediting_800530(17076446, -), CAediting_800531(17076456, -), CAediting_800532(17076473, -), CAediting_800533(17076478, -), CAediting_800534(17076518, -), CAediting_800535(17076610, -), CAediting_800536(17076616, -), CAediting_800537(17076637, -), CAediting_800538(17076645, -), CAediting_800539(17076647, -), CAediting_800540(17076650, -), CAediting_800541(17076656, -), CAediting_800542(17076658, -), CAediting_800543(17076676, -), CAediting_800544(17076678, -), CAediting_800545(17076686, -), |
Top |
RNA editing positional annotations for RPS13 using Annovar |
![]() |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_800534 | chr11_17076518_- | nonsynonymous SNV | ENST00000533969.1 | c.A181G | p.S61G | D | . | N |
![]() |
CAeditome ID | Position | Variant type |
CAediting_800521 | chr11_17076184_- | ncRNA_intronic |
CAediting_800522 | chr11_17076195_- | ncRNA_intronic |
CAediting_800523 | chr11_17076264_- | ncRNA_intronic |
CAediting_800524 | chr11_17076300_- | ncRNA_intronic |
CAediting_800525 | chr11_17076328_- | ncRNA_intronic |
CAediting_800526 | chr11_17076407_- | ncRNA_intronic |
CAediting_800527 | chr11_17076418_- | ncRNA_intronic |
CAediting_800528 | chr11_17076434_- | ncRNA_intronic |
CAediting_800529 | chr11_17076437_- | ncRNA_intronic |
CAediting_800530 | chr11_17076446_- | exonic |
CAediting_800531 | chr11_17076456_- | exonic |
CAediting_800532 | chr11_17076473_- | exonic |
CAediting_800533 | chr11_17076478_- | exonic |
CAediting_800534 | chr11_17076518_- | exonic |
CAediting_800535 | chr11_17076610_- | ncRNA_intronic |
CAediting_800536 | chr11_17076616_- | ncRNA_intronic |
CAediting_800537 | chr11_17076637_- | ncRNA_intronic |
CAediting_800538 | chr11_17076645_- | ncRNA_intronic |
CAediting_800539 | chr11_17076647_- | ncRNA_intronic |
CAediting_800540 | chr11_17076650_- | ncRNA_intronic |
CAediting_800541 | chr11_17076656_- | ncRNA_intronic |
CAediting_800542 | chr11_17076658_- | ncRNA_intronic |
CAediting_800543 | chr11_17076676_- | ncRNA_intronic |
CAediting_800544 | chr11_17076678_- | ncRNA_intronic |
CAediting_800545 | chr11_17076686_- | ncRNA_intronic |
![]() |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_800521 | chr11_17076184_- | SINE | Alu | AluSx |
CAediting_800522 | chr11_17076195_- | SINE | Alu | AluSx |
CAediting_800523 | chr11_17076264_- | SINE | Alu | AluSx |
CAediting_800524 | chr11_17076300_- | SINE | Alu | AluSx |
CAediting_800525 | chr11_17076328_- | SINE | Alu | AluSx |
CAediting_800526 | chr11_17076407_- | SINE | Alu | AluSx1 |
CAediting_800527 | chr11_17076418_- | SINE | Alu | AluSx1 |
CAediting_800528 | chr11_17076434_- | SINE | Alu | AluSx1 |
CAediting_800529 | chr11_17076437_- | SINE | Alu | AluSx1 |
CAediting_800530 | chr11_17076446_- | SINE | Alu | AluSx1 |
CAediting_800531 | chr11_17076456_- | SINE | Alu | AluSx1 |
CAediting_800532 | chr11_17076473_- | SINE | Alu | AluSx1 |
CAediting_800533 | chr11_17076478_- | SINE | Alu | AluSx1 |
CAediting_800534 | chr11_17076518_- | SINE | Alu | AluSx1 |
CAediting_800535 | chr11_17076610_- | SINE | Alu | AluJo |
CAediting_800536 | chr11_17076616_- | SINE | Alu | AluJo |
CAediting_800537 | chr11_17076637_- | SINE | Alu | AluJo |
CAediting_800538 | chr11_17076645_- | SINE | Alu | AluJo |
CAediting_800539 | chr11_17076647_- | SINE | Alu | AluJo |
CAediting_800540 | chr11_17076650_- | SINE | Alu | AluJo |
CAediting_800541 | chr11_17076656_- | SINE | Alu | AluJo |
CAediting_800542 | chr11_17076658_- | SINE | Alu | AluJo |
CAediting_800543 | chr11_17076676_- | SINE | Alu | AluJo |
CAediting_800544 | chr11_17076678_- | SINE | Alu | AluJo |
CAediting_800545 | chr11_17076686_- | SINE | Alu | AluJo |
Top |
RNA A-to-I editing events in the alternative splicing sites for RPS13 |
![]() |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_800529 | chr11_17076437_- | 17076436:17076444 | 5SS | 0+5i | AGGTGGGAT | -18.32 | AGGTGGGGT | -10.78 |
![]() |
![]() |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPS13 |
![]() * The grey color means N/A. |
![]() |
![]() |
![]() |
![]() * Click on the image to enlarge it in a new window. |
Top |
Protein coding region RNA A-to-I editings for RPS13 |
![]() * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for RPS13 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
Top |
The effects of the RNA editing to the stability of the RNA structures for RPS13 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
![]() |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for RPS13 |
![]() |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LUAD | CAediting_800540 | chr11_17076650_- | 0.027353865996039 | 0.294906725057873 | . | . | . | . |
LUSC | CAediting_800545 | chr11_17076686_- | 0.0327821689459117 | 0.185248880007344 | . | . | . | . |
Top |
Relation with cancer stages for RPS13 |
![]() |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
KIRC | pathologic_stage | CAediting_800545 | chr11_17076686_- | 0.0167769504467157 | 0.285021637953972 |
LUSC | pathologic_stage | CAediting_800538 | chr11_17076645_- | 0.000236754906612977 | 0.484497984742184 |
Top |
Relation with survival for RPS13 |
![]() |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
Top |
RelatedDrugs for RPS13 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for RPS13 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |