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Editing gene: RPL13 (CAeditome ID:6137)

Gene summary for RPL13

Gene summary

Gene information	Gene symbol	RPL13
	Gene ID	6137
	Gene name	ribosomal protein L13
	Synonyms	BBC1\|D16S444E\|D16S44E\|L13\|SEMDIST
	Cytomap	16q24.3\|17p11.2
	Type of gene	protein-coding
	Description	60S ribosomal protein L13breast basic conserved 1breast basic conserved protein 1large ribosomal subunit protein eL13
	Modification date	20210518
	UniProtAcc	P26373
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
RPL13	GO:0003735	60S ribosomal protein L13	23636399
RPL13	GO:0005730	60S ribosomal protein L13	0000052
RPL13	GO:0005783	60S ribosomal protein L13	0000052
RPL13	GO:0005829	60S ribosomal protein L13	0000052
RPL13	GO:0022626	60S ribosomal protein L13	23636399

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RNA A-to-I events for RPL13

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000167526.12

RNA A-to-I editing events in Cancer.

CAediting_1145006(89563430, +), CAediting_1145007(89563460, +), CAediting_1145008(89563466, +), CAediting_1145009(89563480, +), CAediting_1145010(89563487, +), CAediting_1145011(89563498, +), CAediting_1145012(89563499, +), CAediting_1145013(89563503, +), CAediting_1145014(89563519, +), CAediting_1145015(89563523, +), CAediting_1145016(89563543, +), CAediting_1145017(89563590, +), CAediting_1145018(89563592, +), CAediting_1145019(89563618, +), CAediting_1145020(89563628, +), CAediting_1145021(89563632, +), CAediting_1145022(89563664, +), CAediting_1145023(89563665, +), CAediting_1145024(89563668, +), CAediting_1145025(89563679, +), CAediting_1145026(89564054, +), CAediting_1145027(89564438, +), CAediting_1145028(89564455, +), CAediting_1145029(89564475, +), CAediting_1145030(89564499, +), CAediting_1145031(89564500, +), CAediting_1145032(89566543, +), CAediting_1145033(89566584, +),

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RNA editing positional annotations for RPL13 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1145006	chr16_89563430_+	UTR3
CAediting_1145007	chr16_89563460_+	UTR3
CAediting_1145008	chr16_89563466_+	UTR3
CAediting_1145009	chr16_89563480_+	UTR3
CAediting_1145010	chr16_89563487_+	UTR3
CAediting_1145011	chr16_89563498_+	UTR3
CAediting_1145012	chr16_89563499_+	UTR3
CAediting_1145013	chr16_89563503_+	UTR3
CAediting_1145014	chr16_89563519_+	UTR3
CAediting_1145015	chr16_89563523_+	UTR3
CAediting_1145016	chr16_89563543_+	UTR3
CAediting_1145017	chr16_89563590_+	UTR3
CAediting_1145018	chr16_89563592_+	UTR3
CAediting_1145019	chr16_89563618_+	UTR3
CAediting_1145020	chr16_89563628_+	UTR3
CAediting_1145021	chr16_89563632_+	UTR3
CAediting_1145022	chr16_89563664_+	UTR3
CAediting_1145023	chr16_89563665_+	UTR3
CAediting_1145024	chr16_89563668_+	UTR3
CAediting_1145025	chr16_89563679_+	UTR3
CAediting_1145026	chr16_89564054_+	UTR3
CAediting_1145027	chr16_89564438_+	UTR3
CAediting_1145028	chr16_89564455_+	UTR3
CAediting_1145029	chr16_89564475_+	UTR3
CAediting_1145030	chr16_89564499_+	UTR3
CAediting_1145031	chr16_89564500_+	UTR3
CAediting_1145032	chr16_89566543_+	UTR3
CAediting_1145033	chr16_89566584_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1145006	chr16_89563430_+	SINE	Alu	AluSx4
CAediting_1145007	chr16_89563460_+	SINE	Alu	AluSx4
CAediting_1145008	chr16_89563466_+	SINE	Alu	AluSx4
CAediting_1145009	chr16_89563480_+	SINE	Alu	AluSx4
CAediting_1145010	chr16_89563487_+	SINE	Alu	AluSx4
CAediting_1145011	chr16_89563498_+	SINE	Alu	AluSx4
CAediting_1145012	chr16_89563499_+	SINE	Alu	AluSx4
CAediting_1145013	chr16_89563503_+	SINE	Alu	AluSx4
CAediting_1145014	chr16_89563519_+	SINE	Alu	AluSx4
CAediting_1145015	chr16_89563523_+	SINE	Alu	AluSx4
CAediting_1145016	chr16_89563543_+	SINE	Alu	AluSx4
CAediting_1145017	chr16_89563590_+	SINE	Alu	AluSx4
CAediting_1145018	chr16_89563592_+	SINE	Alu	AluJb
CAediting_1145019	chr16_89563618_+	SINE	Alu	AluJb
CAediting_1145020	chr16_89563628_+	SINE	Alu	AluJb
CAediting_1145021	chr16_89563632_+	SINE	Alu	AluJb
CAediting_1145022	chr16_89563664_+	SINE	Alu	AluJb
CAediting_1145023	chr16_89563665_+	SINE	Alu	AluJb
CAediting_1145024	chr16_89563668_+	SINE	Alu	AluJb
CAediting_1145025	chr16_89563679_+	SINE	Alu	AluJb
CAediting_1145027	chr16_89564438_+	SINE	Alu	AluSx
CAediting_1145028	chr16_89564455_+	SINE	Alu	AluSx
CAediting_1145029	chr16_89564475_+	SINE	Alu	AluSx
CAediting_1145030	chr16_89564499_+	SINE	Alu	AluSx
CAediting_1145031	chr16_89564500_+	SINE	Alu	AluSx
CAediting_1145032	chr16_89566543_+	SINE	Alu	AluJr
CAediting_1145033	chr16_89566584_+	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for RPL13

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000167526.12.RPL13.

Correlation between RNA A-to-I editing and PSI for ENSG00000167526.12.RPL13.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPL13

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

KIRC.CAediting_1145012.ENSG00000167526.RPL13.png
Soverview

THYM.CAediting_1145011.ENSG00000167526.RPL13.png
Soverview

THYM.CAediting_1145019.ENSG00000167526.RPL13.png
Soverview

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Protein coding region RNA A-to-I editings for RPL13

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for RPL13

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1145012	chr16_89563499_+	ENSG00000167526.12	ENST00000452368	hsa-miR-664b-5p	89563495	89563502	8mer-1a	89563479	89563502	152.00	-19.64
CAediting_1145012	chr16_89563499_+	ENSG00000167526.12	ENST00000393099	hsa-miR-664b-5p	89563495	89563502	8mer-1a	89563479	89563502	152.00	-19.64
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000452368	hsa-miR-125b-1-3p	89563496	89563502	7mer-m8	89563482	89563503	146.00	-18.82
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000393099	hsa-miR-125b-1-3p	89563496	89563502	7mer-m8	89563482	89563503	146.00	-18.82
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-340-3p	89563586	89563592	7mer-m8	89563572	89563593	155.00	-15.89
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6827-3p	89563586	89563592	7mer-m8	89563573	89563593	159.00	-16.81
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-340-3p	89563586	89563592	7mer-m8	89563572	89563593	155.00	-15.89
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6827-3p	89563586	89563592	7mer-m8	89563573	89563593	159.00	-16.81
CAediting_1145019	chr16_89563618_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4793-3p	89563614	89563620	7mer-m8	89563599	89563621	156.00	-20.23
CAediting_1145019	chr16_89563618_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6807-3p	89563616	89563621	6mer	89563600	89563622	162.00	-33.19
CAediting_1145019	chr16_89563618_+	ENSG00000167526.12	ENST00000452368	hsa-miR-7703	89563613	89563619	7mer-m8	89563598	89563620	162.00	-26.20
CAediting_1145019	chr16_89563618_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4793-3p	89563614	89563620	7mer-m8	89563599	89563621	156.00	-20.23
CAediting_1145019	chr16_89563618_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6807-3p	89563616	89563621	6mer	89563600	89563622	162.00	-33.19
CAediting_1145019	chr16_89563618_+	ENSG00000167526.12	ENST00000393099	hsa-miR-7703	89563613	89563619	7mer-m8	89563598	89563620	162.00	-26.20
CAediting_1145026	chr16_89564054_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4669	89564052	89564059	8mer-1a	89564038	89564059	164.00	-28.28
CAediting_1145006	chr16_89563430_+	ENSG00000167526.12	ENST00000562879	hsa-miR-4753-3p	89563424	89563430	7mer-m8	89563410	89563431	152.00	-10.71
CAediting_1145006	chr16_89563430_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4753-3p	89563424	89563430	7mer-m8	89563410	89563431	152.00	-10.71
CAediting_1145006	chr16_89563430_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4753-3p	89563424	89563430	7mer-m8	89563410	89563431	152.00	-10.71
CAediting_1145006	chr16_89563430_+	ENSG00000167526.12	ENST00000472354	hsa-miR-4753-3p	89563424	89563430	7mer-m8	89563410	89563431	152.00	-10.71
CAediting_1145009	chr16_89563480_+	ENSG00000167526.12	ENST00000452368	hsa-miR-1281	89563473	89563479	7mer-m8	89563470	89563486	147.00	-26.81
CAediting_1145009	chr16_89563480_+	ENSG00000167526.12	ENST00000393099	hsa-miR-1281	89563473	89563479	7mer-m8	89563470	89563486	147.00	-26.81
CAediting_1145010	chr16_89563487_+	ENSG00000167526.12	ENST00000452368	hsa-miR-1224-3p	89563481	89563487	7mer-m8	89563469	89563488	160.00	-33.50
CAediting_1145010	chr16_89563487_+	ENSG00000167526.12	ENST00000393099	hsa-miR-1224-3p	89563481	89563487	7mer-m8	89563469	89563488	160.00	-33.50
CAediting_1145015	chr16_89563523_+	ENSG00000167526.12	ENST00000452368	hsa-miR-1825	89563516	89563522	7mer-m8	89563507	89563523	150.00	-21.94
CAediting_1145015	chr16_89563523_+	ENSG00000167526.12	ENST00000452368	hsa-miR-3922-3p	89563522	89563527	6mer	89563507	89563528	140.00	-19.50
CAediting_1145015	chr16_89563523_+	ENSG00000167526.12	ENST00000393099	hsa-miR-1825	89563516	89563522	7mer-m8	89563507	89563523	150.00	-21.94
CAediting_1145015	chr16_89563523_+	ENSG00000167526.12	ENST00000393099	hsa-miR-3922-3p	89563522	89563527	6mer	89563507	89563528	140.00	-19.50
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000452368	hsa-miR-2682-3p	89563584	89563591	8mer-1a	89563570	89563591	140.00	-10.02
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6747-3p	89563587	89563593	7mer-m8	89563574	89563594	142.00	-16.15
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6752-3p	89563588	89563594	7mer-m8	89563575	89563595	142.00	-15.50
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6781-3p	89563584	89563591	8mer-1a	89563570	89563591	150.00	-14.62
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000393099	hsa-miR-2682-3p	89563584	89563591	8mer-1a	89563570	89563591	140.00	-10.02
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6747-3p	89563587	89563593	7mer-m8	89563574	89563594	142.00	-16.15
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6752-3p	89563588	89563594	7mer-m8	89563575	89563595	142.00	-15.50
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6781-3p	89563584	89563591	8mer-1a	89563570	89563591	150.00	-14.62
CAediting_1145023	chr16_89563665_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4649-3p	89563658	89563664	7mer-m8	89563644	89563665	146.00	-19.52
CAediting_1145023	chr16_89563665_+	ENSG00000167526.12	ENST00000452368	hsa-miR-544b	89563659	89563665	7mer-m8	89563646	89563666	161.00	-19.38
CAediting_1145023	chr16_89563665_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4649-3p	89563658	89563664	7mer-m8	89563644	89563665	146.00	-19.52
CAediting_1145023	chr16_89563665_+	ENSG00000167526.12	ENST00000393099	hsa-miR-544b	89563659	89563665	7mer-m8	89563646	89563666	161.00	-19.38
CAediting_1145028	chr16_89564455_+	ENSG00000167526.12	ENST00000393099	hsa-miR-3117-3p	89564453	89564460	8mer-1a	89564440	89564460	142.00	-14.11
CAediting_1145028	chr16_89564455_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4759	89564452	89564459	8mer-1a	89564439	89564459	149.00	-15.80
CAediting_1145029	chr16_89564475_+	ENSG00000167526.12	ENST00000393099	hsa-miR-10396a-3p	89564471	89564477	7mer-m8	89564458	89564478	151.00	-28.37
CAediting_1145029	chr16_89564475_+	ENSG00000167526.12	ENST00000393099	hsa-miR-10396b-3p	89564471	89564477	7mer-m8	89564457	89564478	151.00	-28.50
CAediting_1145029	chr16_89564475_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4707-5p	89564470	89564476	7mer-m8	89564455	89564477	144.00	-28.01
CAediting_1145031	chr16_89564500_+	ENSG00000167526.12	ENST00000393099	hsa-miR-1229-3p	89564494	89564500	7mer-m8	89564478	89564501	148.00	-18.91
CAediting_1145031	chr16_89564500_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6511a-3p	89564493	89564500	8mer-1a	89564472	89564500	151.00	-28.07
CAediting_1145031	chr16_89564500_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6511a-3p	89564493	89564500	8mer-1a	89564472	89564500	151.00	-28.07
CAediting_1145031	chr16_89564500_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6511a-3p	89564493	89564500	8mer-1a	89564472	89564500	151.00	-28.07
CAediting_1145031	chr16_89564500_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6511a-3p	89564493	89564500	8mer-1a	89564472	89564500	151.00	-28.07
CAediting_1145031	chr16_89564500_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6511b-3p	89564493	89564500	8mer-1a	89564475	89564500	147.00	-23.42
CAediting_1145031	chr16_89564500_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6511b-3p	89564493	89564500	8mer-1a	89564475	89564500	147.00	-23.42
CAediting_1145007	chr16_89563460_+	ENSG00000167526.12	ENST00000562879	hsa-miR-125b-2-3p	89563453	89563459	7mer-m8	89563437	89563460	142.00	-15.61
CAediting_1145007	chr16_89563460_+	ENSG00000167526.12	ENST00000562879	hsa-miR-140-3p	89563456	89563461	6mer	89563439	89563462	145.00	-21.99
CAediting_1145007	chr16_89563460_+	ENSG00000167526.12	ENST00000452368	hsa-miR-125b-2-3p	89563453	89563459	7mer-m8	89563437	89563460	142.00	-15.61
CAediting_1145007	chr16_89563460_+	ENSG00000167526.12	ENST00000452368	hsa-miR-140-3p	89563456	89563461	6mer	89563439	89563462	145.00	-21.99
CAediting_1145007	chr16_89563460_+	ENSG00000167526.12	ENST00000393099	hsa-miR-125b-2-3p	89563453	89563459	7mer-m8	89563437	89563460	142.00	-15.61
CAediting_1145007	chr16_89563460_+	ENSG00000167526.12	ENST00000393099	hsa-miR-140-3p	89563456	89563461	6mer	89563439	89563462	145.00	-21.99

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000562879	hsa-miR-4772-3p	89563460	89563466	7mer-m8	89563446	89563467	152	-15.78
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000562879	hsa-miR-558	89563463	89563469	7mer-m8	89563452	89563470	148	-12.45
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000562879	hsa-miR-6500-5p	89563465	89563470	6mer	89563449	89563471	144	-23.34
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-10a-5p	89563589	89563595	7mer-m8	89563574	89563596	140	-12.89
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-10b-5p	89563589	89563595	7mer-m8	89563574	89563596	140	-11.43
CAediting_1145024	chr16_89563668_+	ENSG00000167526.12	ENST00000452368	hsa-miR-1288-3p	89563665	89563671	7mer-m8	89563653	89563672	143	-15.54
CAediting_1145022	chr16_89563664_+	ENSG00000167526.12	ENST00000452368	hsa-miR-1304-5p	89563658	89563664	7mer-m8	89563641	89563665	153	-20.91
CAediting_1145023	chr16_89563665_+	ENSG00000167526.12	ENST00000452368	hsa-miR-1304-5p	89563658	89563664	7mer-m8	89563641	89563665	153	-20.91
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000452368	hsa-miR-1343-3p	89563499	89563505	7mer-m8	89563485	89563506	140	-23.16
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000452368	hsa-miR-143-5p	89563514	89563519	6mer	89563499	89563520	145	-26.94
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000452368	hsa-miR-148a-3p	89563515	89563522	8mer-1a	89563500	89563522	141	-17.46
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000452368	hsa-miR-148b-3p	89563515	89563522	8mer-1a	89563501	89563522	142	-16.53
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000452368	hsa-miR-152-3p	89563515	89563522	8mer-1a	89563502	89563522	140	-14.24
CAediting_1145024	chr16_89563668_+	ENSG00000167526.12	ENST00000452368	hsa-miR-3169	89563666	89563672	7mer-m8	89563653	89563673	152	-20.46
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000452368	hsa-miR-339-5p	89563588	89563594	7mer-m8	89563572	89563595	141	-15.93
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-339-5p	89563588	89563594	7mer-m8	89563572	89563595	141	-15.93
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000452368	hsa-miR-3929	89563676	89563682	7mer-m8	89563662	89563683	150	-21.86
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000452368	hsa-miR-3944-5p	89563513	89563519	7mer-m8	89563500	89563520	140	-18.69
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4421	89563587	89563593	7mer-m8	89563573	89563594	142	-12.05
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4421	89563587	89563593	7mer-m8	89563573	89563594	142	-12.05
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4478	89563676	89563682	7mer-m8	89563668	89563683	153	-26.4
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4725-5p	89563590	89563596	7mer-m8	89563577	89563597	143	-16.55
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4753-3p	89563583	89563589	7mer-m8	89563569	89563590	155	-7.79
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000452368	hsa-miR-4772-3p	89563460	89563466	7mer-m8	89563446	89563467	152	-15.78
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000452368	hsa-miR-485-5p	89563677	89563683	7mer-m8	89563665	89563684	149	-15.23
CAediting_1145009	chr16_89563480_+	ENSG00000167526.12	ENST00000452368	hsa-miR-5001-3p	89563475	89563481	7mer-m8	89563464	89563482	153	-26.06
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-504-5p	89563590	89563596	7mer-m8	89563577	89563597	146	-18.45
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000452368	hsa-miR-558	89563463	89563469	7mer-m8	89563452	89563470	148	-12.45
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6500-5p	89563465	89563470	6mer	89563449	89563471	144	-23.34
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000452368	hsa-miR-660-3p	89563501	89563507	7mer-m8	89563488	89563508	155	-18.59
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6742-3p	89563498	89563505	8mer-1a	89563482	89563505	151	-24.64
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6783-3p	89563499	89563505	7mer-m8	89563485	89563506	142	-19.7
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6818-3p	89563585	89563591	7mer-m8	89563571	89563592	152	-12.39
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6818-3p	89563585	89563591	7mer-m8	89563571	89563592	152	-12.39
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6834-5p	89563672	89563678	7mer-m8	89563662	89563679	144	-16.87
CAediting_1145009	chr16_89563480_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6836-3p	89563473	89563479	7mer-m8	89563461	89563480	149	-21.3
CAediting_1145010	chr16_89563487_+	ENSG00000167526.12	ENST00000452368	hsa-miR-6866-3p	89563486	89563491	6mer	89563471	89563492	145	-27.44
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000452368	hsa-miR-7156-3p	89563512	89563518	7mer-m8	89563497	89563519	147	-19.88
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000452368	hsa-miR-7160-5p	89563674	89563680	7mer-m8	89563662	89563681	152	-23.28
CAediting_1145028	chr16_89564455_+	ENSG00000167526.12	ENST00000393099	hsa-miR-10399-5p	89564449	89564455	7mer-m8	89564435	89564456	144	-10.39
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-10a-5p	89563589	89563595	7mer-m8	89563574	89563596	140	-12.89
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-10b-5p	89563589	89563595	7mer-m8	89563574	89563596	140	-11.43
CAediting_1145024	chr16_89563668_+	ENSG00000167526.12	ENST00000393099	hsa-miR-1288-3p	89563665	89563671	7mer-m8	89563653	89563672	143	-15.54
CAediting_1145022	chr16_89563664_+	ENSG00000167526.12	ENST00000393099	hsa-miR-1304-5p	89563658	89563664	7mer-m8	89563641	89563665	153	-20.91
CAediting_1145023	chr16_89563665_+	ENSG00000167526.12	ENST00000393099	hsa-miR-1304-5p	89563658	89563664	7mer-m8	89563641	89563665	153	-20.91
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000393099	hsa-miR-1343-3p	89563499	89563505	7mer-m8	89563485	89563506	140	-23.16
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000393099	hsa-miR-143-5p	89563514	89563519	6mer	89563499	89563520	145	-26.94
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000393099	hsa-miR-148a-3p	89563515	89563522	8mer-1a	89563500	89563522	141	-17.46
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000393099	hsa-miR-148b-3p	89563515	89563522	8mer-1a	89563501	89563522	142	-16.53
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000393099	hsa-miR-152-3p	89563515	89563522	8mer-1a	89563502	89563522	140	-14.24
CAediting_1145027	chr16_89564438_+	ENSG00000167526.12	ENST00000393099	hsa-miR-3130-3p	89564432	89564438	7mer-m8	89564419	89564439	142	-18.47
CAediting_1145027	chr16_89564438_+	ENSG00000167526.12	ENST00000393099	hsa-miR-3130-3p	89564432	89564438	7mer-m8	89564419	89564439	142	-18.47
CAediting_1145024	chr16_89563668_+	ENSG00000167526.12	ENST00000393099	hsa-miR-3169	89563666	89563672	7mer-m8	89563653	89563673	152	-20.46
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000393099	hsa-miR-339-5p	89563588	89563594	7mer-m8	89563572	89563595	141	-15.93
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-339-5p	89563588	89563594	7mer-m8	89563572	89563595	141	-15.93
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000393099	hsa-miR-3929	89563676	89563682	7mer-m8	89563662	89563683	150	-21.86
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000393099	hsa-miR-3944-5p	89563513	89563519	7mer-m8	89563500	89563520	140	-18.69
CAediting_1145027	chr16_89564438_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4252	89564436	89564442	7mer-m8	89564424	89564443	148	-21.98
CAediting_1145026	chr16_89564054_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4303	89564049	89564055	7mer-m8	89564040	89564056	143	-12.15
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4421	89563587	89563593	7mer-m8	89563573	89563594	142	-12.05
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4421	89563587	89563593	7mer-m8	89563573	89563594	142	-12.05
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4478	89563676	89563682	7mer-m8	89563668	89563683	153	-26.4
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4725-5p	89563590	89563596	7mer-m8	89563577	89563597	143	-16.55
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4753-3p	89563583	89563589	7mer-m8	89563569	89563590	155	-7.79
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000393099	hsa-miR-4772-3p	89563460	89563466	7mer-m8	89563446	89563467	152	-15.78
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000393099	hsa-miR-485-5p	89563677	89563683	7mer-m8	89563665	89563684	149	-15.23
CAediting_1145009	chr16_89563480_+	ENSG00000167526.12	ENST00000393099	hsa-miR-5001-3p	89563475	89563481	7mer-m8	89563464	89563482	153	-26.06
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-504-5p	89563590	89563596	7mer-m8	89563577	89563597	146	-18.45
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000393099	hsa-miR-558	89563463	89563469	7mer-m8	89563452	89563470	148	-12.45
CAediting_1145008	chr16_89563466_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6500-5p	89563465	89563470	6mer	89563449	89563471	144	-23.34
CAediting_1145028	chr16_89564455_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6504-3p	89564449	89564455	7mer-m8	89564435	89564456	152	-15.11
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000393099	hsa-miR-660-3p	89563501	89563507	7mer-m8	89563488	89563508	155	-18.59
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6742-3p	89563498	89563505	8mer-1a	89563482	89563505	151	-24.64
CAediting_1145013	chr16_89563503_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6783-3p	89563499	89563505	7mer-m8	89563485	89563506	142	-19.7
CAediting_1145017	chr16_89563590_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6818-3p	89563585	89563591	7mer-m8	89563571	89563592	152	-12.39
CAediting_1145018	chr16_89563592_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6818-3p	89563585	89563591	7mer-m8	89563571	89563592	152	-12.39
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6834-5p	89563672	89563678	7mer-m8	89563662	89563679	144	-16.87
CAediting_1145009	chr16_89563480_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6836-3p	89563473	89563479	7mer-m8	89563461	89563480	149	-21.3
CAediting_1145010	chr16_89563487_+	ENSG00000167526.12	ENST00000393099	hsa-miR-6866-3p	89563486	89563491	6mer	89563471	89563492	145	-27.44
CAediting_1145014	chr16_89563519_+	ENSG00000167526.12	ENST00000393099	hsa-miR-7156-3p	89563512	89563518	7mer-m8	89563497	89563519	147	-19.88
CAediting_1145025	chr16_89563679_+	ENSG00000167526.12	ENST00000393099	hsa-miR-7160-5p	89563674	89563680	7mer-m8	89563662	89563681	152	-23.28

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229415	chr17_67471547_+	ENSG00000167526.12	ENST00000562879	hsa-miR-548aa	89563167	89563172	6mer	89563149	89563173	146	-15.32
CAediting_1229415	chr17_67471547_+	ENSG00000167526.12	ENST00000452368	hsa-miR-548aa	89563167	89563172	6mer	89563149	89563173	146	-15.32
CAediting_396018	chr5_1062918_-	ENSG00000167526.12	ENST00000452368	hsa-miR-4635	89563659	89563665	7mer-m8	89563645	89563666	152	-17.69
CAediting_524911	chr7_5495852_-	ENSG00000167526.12	ENST00000452368	hsa-miR-589-3p	89563828	89563835	8mer-1a	89563808	89563835	158	-22.76
CAediting_1229413	chr17_67471544_+	ENSG00000167526.12	ENST00000393099	hsa-miR-548aa	89564033	89564039	7mer-m8	89564017	89564040	153	-16.48
CAediting_1229415	chr17_67471547_+	ENSG00000167526.12	ENST00000393099	hsa-miR-548aa	89563167	89563172	6mer	89563149	89563173	146	-15.32
CAediting_1368054	chr19_46709310_-	ENSG00000167526.12	ENST00000393099	hsa-miR-320e	89564076	89564083	8mer-1a	89564066	89564083	141	-17.09
CAediting_396018	chr5_1062918_-	ENSG00000167526.12	ENST00000393099	hsa-miR-4635	89563659	89563665	7mer-m8	89563645	89563666	152	-17.69
CAediting_524911	chr7_5495852_-	ENSG00000167526.12	ENST00000393099	hsa-miR-589-3p	89563828	89563835	8mer-1a	89563808	89563835	158	-22.76
CAediting_1229415	chr17_67471547_+	ENSG00000167526.12	ENST00000472354	hsa-miR-548aa	89563167	89563172	6mer	89563149	89563173	146	-15.32

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1351755	chr19_40282625_-	ENSG00000167526.12	ENST00000393099	hsa-miR-641	89564008	89564014	7mer-m8	89563989	89564015	149	-18.56

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for RPL13

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for RPL13

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_1145011	chr16_89563498_+	0.0280873052152283	0.193405770351831	.	.	.	.
LGG	CAediting_1145011	chr16_89563498_+	0.00428876089760281	0.21370623677858	.	.	.	.
BRCA	CAediting_1145011	chr16_89563498_+	0.000196204383532582	0.155368013263712	.	.	.	.
CESC	CAediting_1145011	chr16_89563498_+	0.0107676695361355	0.263315210980226	.	.	0.0456381230621408	0.207800265243638
LUAD	CAediting_1145011	chr16_89563498_+	0.00540345558471119	0.192709581155531	.	.	.	.
LUSC	CAediting_1145011	chr16_89563498_+	0.0044241796930204	0.198507960779696	.	.	.	.
THCA	CAediting_1145011	chr16_89563498_+	3.52268295949435e-05	0.203773366346614	.	.	.	.
OV	CAediting_1145011	chr16_89563498_+	0.0239577967350043	0.138942943495718	.	.	.	.
PAAD	CAediting_1145011	chr16_89563498_+	0.00577052285052657	0.297031381078401	.	.	.	.
PCPG	CAediting_1145011	chr16_89563498_+	0.0108347424340862	0.28346559773696	.	.	.	.
SKCM	CAediting_1145011	chr16_89563498_+	0.0120740983756199	0.181772394298954	.	.	.	.
TGCT	CAediting_1145011	chr16_89563498_+	2.92129155448394e-05	0.48704156720212	.	.	.	.
THYM	CAediting_1145011	chr16_89563498_+	0.0427378275508382	0.241191555730631	.	.	0.006895913800556	0.317926062275783
BLCA	CAediting_1145019	chr16_89563618_+	1.55185992721847e-09	0.438807830084356	0.00328747760820993	0.222294081378854	.	.
LGG	CAediting_1145019	chr16_89563618_+	4.92176085261981e-11	0.297728730003543	6.86409649211267e-05	0.182953190183912	0.0469353874372119	0.0918950251703231
BRCA	CAediting_1145019	chr16_89563618_+	2.24223126012619e-29	0.385851502752295	.	.	.	.
LIHC	CAediting_1145019	chr16_89563618_+	0.000493805243840301	0.380744751688072	.	.	0.00984053737750988	0.287024678819405
CESC	CAediting_1145019	chr16_89563618_+	5.38603360503543e-05	0.354389274636092	.	.	0.0242230279656681	0.202328106739275
LUAD	CAediting_1145019	chr16_89563618_+	0.000112677896908671	0.247698299784832	.	.	.	.
COAD	CAediting_1145019	chr16_89563618_+	0.000315522988834516	0.200112216548955	.	.	.	.
LUSC	CAediting_1145019	chr16_89563618_+	3.6788879875255e-10	0.394242852483442	.	.	0.0145450533982372	0.159227978896976
GBM	CAediting_1145019	chr16_89563618_+	8.79798456433274e-06	0.399681124024421	0.00159538950559146	0.289914895978072	.	.
PRAD	CAediting_1145019	chr16_89563618_+	6.78756524515876e-10	0.279977258797249	.	.	.	.
HNSC	CAediting_1145019	chr16_89563618_+	1.04524049844023e-07	0.312382276921865	.	.	.	.
STAD	CAediting_1145019	chr16_89563618_+	1.77335701904337e-05	0.249950525612953	.	.	.	.
THCA	CAediting_1145019	chr16_89563618_+	2.27288579262461e-13	0.335372493707433	.	.	.	.
KIRC	CAediting_1145019	chr16_89563618_+	6.68019671208353e-06	0.212368943201441	.	.	.	.
UCEC	CAediting_1145019	chr16_89563618_+	1.91705201581101e-13	0.43450183862601	0.0256928748974112	0.138085106188841	.	.
ESCA	CAediting_1145019	chr16_89563618_+	0.037435500721842	0.173008190887982	.	.	.	.
OV	CAediting_1145019	chr16_89563618_+	4.35945466099279e-06	0.244084468940278	.	.	.	.
PCPG	CAediting_1145019	chr16_89563618_+	6.33407419239956e-10	0.517654973110859	0.0289204840735863	0.195468600441325	.	.
SKCM	CAediting_1145019	chr16_89563618_+	6.50598118163502e-16	0.467645152223543	.	.	.	.
SARC	CAediting_1145019	chr16_89563618_+	0.00212099236299778	0.344996480014074	.	.	.	.
TGCT	CAediting_1145019	chr16_89563618_+	9.64504347829175e-10	0.574103904321899	.	.	.	.
THYM	CAediting_1145019	chr16_89563618_+	0.00298823114700148	0.316507364014986	0.00373599305398957	0.309488777918365	0.00091827635777374	0.351092844904986
THCA	CAediting_1145025	chr16_89563679_+	0.0119907710407131	0.349308862480524	.	.	.	.
KIRC	CAediting_1145025	chr16_89563679_+	0.0225921261580384	0.291613360357728	.	.	.	.
LGG	CAediting_1145026	chr16_89564054_+	5.83300351491237e-09	0.526246503528273	.	.	.	.
BRCA	CAediting_1145026	chr16_89564054_+	1.67935418122778e-09	0.341689262625222	.	.	.	.
LUAD	CAediting_1145026	chr16_89564054_+	1.86502291160776e-10	0.548368528829115	.	.	.	.
LUSC	CAediting_1145026	chr16_89564054_+	0.00282495234592351	0.385234149418131	.	.	.	.
THCA	CAediting_1145026	chr16_89564054_+	2.71062147497823e-05	0.256625803898275	.	.	.	.
KIRC	CAediting_1145026	chr16_89564054_+	0.00076291570697033	0.228905519659268	.	.	.	.
UCEC	CAediting_1145026	chr16_89564054_+	.	.	0.0124086628094085	0.295322923361968	0.0018379496685578	0.363431808812619
OV	CAediting_1145026	chr16_89564054_+	4.87831329983298e-07	0.355351577857492	.	.	.	.
PCPG	CAediting_1145026	chr16_89564054_+	3.4202147039641e-05	0.438228944291221	.	.	.	.
SKCM	CAediting_1145026	chr16_89564054_+	0.0269616406577219	0.258939720037022	.	.	.	.

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Relation with cancer stages for RPL13

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
COAD	pathologic_stage	CAediting_1145011	chr16_89563498_+	0.0353005330992306	0.167600810463605
KIRC	pathologic_stage	CAediting_1145011	chr16_89563498_+	0.0421942621103207	0.104553905130835
KIRC	pathologic_stage	CAediting_1145025	chr16_89563679_+	0.00516910924358081	0.356553825560416
LUAD	pathologic_stage	CAediting_1145011	chr16_89563498_+	0.0300350158861273	0.15232891812482
SKCM	pathologic_stage	CAediting_1145026	chr16_89564054_+	0.0337200621810715	0.267975819744788
UCEC	clinical_stage	CAediting_1145026	chr16_89564054_+	0.0160576558262583	0.284839622385493
UVM	clinical_stage	CAediting_1145011	chr16_89563498_+	0.028250004425106	0.310393042544749

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Relation with survival for RPL13

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
KIRC	CAediting_1145026	chr16_89564054_+	0.0325411284348707	0.0233304	96.2489

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RelatedDrugs for RPL13

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for RPL13

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
RPL13	C0024623	Malignant neoplasm of stomach	1	CTD_human
RPL13	C0038356	Stomach Neoplasms	1	CTD_human
RPL13	C0235874	Disease Exacerbation	1	CTD_human
RPL13	C1260899	Anemia, Diamond-Blackfan	1	GENOMICS_ENGLAND
RPL13	C1708349	Hereditary Diffuse Gastric Cancer	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene