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Editing gene: TRIM27 (CAeditome ID:5987)

Gene summary for TRIM27

Gene summary

Gene information	Gene symbol	TRIM27
	Gene ID	5987
	Gene name	tripartite motif containing 27
	Synonyms	RFP\|RNF76
	Cytomap	6p22.1
	Type of gene	protein-coding
	Description	zinc finger protein RFPRFP transforming proteinRING finger protein 76RING-type E3 ubiquitin transferase TRIM27ret finger proteintripartite motif protein TRIM27tripartite motif-containing protein 27
	Modification date	20210524
	UniProtAcc	P14373
	Context	- 33264103(TRIM27 acts as an oncogene and regulates cell proliferation and metastasis in non-small cell lung cancer through SIX3-beta-catenin signaling)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
TRIM27	GO:0000122	Zinc finger protein RFP	10976108
TRIM27	GO:0045814	Zinc finger protein RFP	10976108
TRIM27	GO:0003713	Zinc finger protein RFP	23077300
TRIM27	GO:0004842	Zinc finger protein RFP	22128329
TRIM27	GO:0006469	Zinc finger protein RFP	22128329
TRIM27	GO:0032897	Zinc finger protein RFP	18248090
TRIM27	GO:0034314	Zinc finger protein RFP	23452853
TRIM27	GO:0042147	Zinc finger protein RFP	23452853
TRIM27	GO:0045087	Zinc finger protein RFP	18248090
TRIM27	GO:0051091	Zinc finger protein RFP	23077300
TRIM27	GO:0001650	Zinc finger protein RFP	0000052
TRIM27	GO:0005634	Zinc finger protein RFP	17156811
TRIM27	GO:0005654	Zinc finger protein RFP	0000052
TRIM27	GO:0005654	Zinc finger protein RFP	10976108
TRIM27	GO:0005730	Zinc finger protein RFP	0000052
TRIM27	GO:0005737	Zinc finger protein RFP	17156811
TRIM27	GO:0005768	Zinc finger protein RFP	23452853
TRIM27	GO:0031965	Zinc finger protein RFP	10976108

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RNA A-to-I events for TRIM27

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000204713.9

RNA A-to-I editing events in Cancer.

CAediting_466978(28904955, -), CAediting_466979(28904973, -), CAediting_466980(28904975, -), CAediting_466981(28904978, -), CAediting_466982(28904984, -), CAediting_466983(28905002, -), CAediting_466984(28905015, -), CAediting_466985(28905019, -), CAediting_466986(28905021, -), CAediting_466987(28905028, -), CAediting_466988(28905041, -), CAediting_466989(28905045, -), CAediting_466990(28905053, -), CAediting_466991(28905057, -), CAediting_466992(28905064, -), CAediting_466993(28905075, -), CAediting_466994(28905087, -), CAediting_466995(28905089, -), CAediting_466996(28905128, -), CAediting_466997(28905136, -), CAediting_466998(28905153, -), CAediting_466999(28905165, -), CAediting_467000(28905183, -), CAediting_467001(28905671, -), CAediting_467002(28905679, -), CAediting_467003(28905957, -), CAediting_467004(28905963, -), CAediting_467005(28905975, -), CAediting_467006(28905985, -), CAediting_467007(28905999, -), CAediting_467008(28906002, -), CAediting_467009(28906015, -), CAediting_467010(28906016, -), CAediting_467011(28906017, -), CAediting_467012(28906068, -), CAediting_467013(28906075, -), CAediting_467014(28906079, -), CAediting_467015(28906085, -), CAediting_467016(28906091, -), CAediting_467017(28906103, -), CAediting_467018(28906120, -), CAediting_467019(28906121, -), CAediting_467020(28906133, -), CAediting_467021(28906141, -), CAediting_467022(28906151, -), CAediting_467023(28906159, -), CAediting_467024(28906177, -), CAediting_467025(28909193, -), CAediting_467026(28909204, -), CAediting_467027(28909213, -), CAediting_467028(28909214, -), CAediting_467029(28909219, -), CAediting_467030(28910009, -), CAediting_467031(28910027, -), CAediting_467032(28910047, -), CAediting_467033(28910051, -), CAediting_467034(28910062, -), CAediting_467035(28910081, -), CAediting_467036(28910101, -), CAediting_467037(28910597, -), CAediting_467038(28910602, -), CAediting_467039(28912234, -), CAediting_467040(28912248, -), CAediting_467041(28912274, -), CAediting_467042(28912278, -), CAediting_467043(28912287, -), CAediting_467044(28912288, -), CAediting_467045(28912289, -), CAediting_467046(28912306, -), CAediting_467047(28912328, -), CAediting_467048(28912329, -), CAediting_467049(28912337, -), CAediting_467050(28912342, -), CAediting_467051(28912999, -), CAediting_467052(28913012, -), CAediting_467053(28913093, -), CAediting_467054(28913172, -), CAediting_467055(28913173, -), CAediting_467056(28914051, -), CAediting_467057(28914052, -), CAediting_467058(28914149, -), CAediting_467059(28914166, -), CAediting_467060(28914196, -), CAediting_467061(28914212, -), CAediting_467062(28914218, -), CAediting_467063(28914231, -), CAediting_467064(28914273, -), CAediting_467065(28914299, -), CAediting_467066(28914362, -), CAediting_467067(28914381, -), CAediting_467068(28914402, -), CAediting_467069(28914407, -), CAediting_467070(28914408, -), CAediting_467071(28915485, -), CAediting_467072(28915487, -), CAediting_467073(28915497, -), CAediting_467074(28915509, -), CAediting_467075(28915551, -), CAediting_467076(28915556, -), CAediting_467077(28915557, -), CAediting_467078(28915596, -), CAediting_467079(28916296, -), CAediting_467080(28916356, -), CAediting_467081(28916430, -), CAediting_467082(28916469, -), CAediting_467083(28916551, -), CAediting_467084(28916897, -), CAediting_467085(28916925, -), CAediting_467086(28917018, -), CAediting_467087(28917020, -), CAediting_467088(28917042, -), CAediting_467089(28917874, -), CAediting_467090(28917965, -), CAediting_467091(28917995, -), CAediting_467092(28918093, -), CAediting_467093(28918098, -), CAediting_467094(28918621, -), CAediting_467095(28918633, -), CAediting_467096(28919123, -), CAediting_467097(28919145, -), CAediting_467098(28919151, -), CAediting_467099(28919175, -), CAediting_467100(28919181, -), CAediting_467101(28919186, -), CAediting_467102(28919190, -), CAediting_467103(28919204, -), CAediting_467104(28919230, -),

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RNA editing positional annotations for TRIM27 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_466978	chr6_28904955_-	ncRNA_exonic
CAediting_466979	chr6_28904973_-	ncRNA_exonic
CAediting_466980	chr6_28904975_-	ncRNA_exonic
CAediting_466981	chr6_28904978_-	ncRNA_exonic
CAediting_466982	chr6_28904984_-	ncRNA_exonic
CAediting_466983	chr6_28905002_-	ncRNA_exonic
CAediting_466984	chr6_28905015_-	ncRNA_exonic
CAediting_466985	chr6_28905019_-	ncRNA_exonic
CAediting_466986	chr6_28905021_-	ncRNA_exonic
CAediting_466987	chr6_28905028_-	ncRNA_exonic
CAediting_466988	chr6_28905041_-	ncRNA_exonic
CAediting_466989	chr6_28905045_-	ncRNA_exonic
CAediting_466990	chr6_28905053_-	ncRNA_exonic
CAediting_466991	chr6_28905057_-	ncRNA_exonic
CAediting_466992	chr6_28905064_-	ncRNA_exonic
CAediting_466993	chr6_28905075_-	ncRNA_exonic
CAediting_466994	chr6_28905087_-	ncRNA_exonic
CAediting_466995	chr6_28905089_-	ncRNA_exonic
CAediting_466996	chr6_28905128_-	ncRNA_exonic
CAediting_466997	chr6_28905136_-	ncRNA_exonic
CAediting_466998	chr6_28905153_-	ncRNA_exonic
CAediting_466999	chr6_28905165_-	ncRNA_exonic
CAediting_467000	chr6_28905183_-	ncRNA_exonic
CAediting_467001	chr6_28905671_-	ncRNA_exonic
CAediting_467002	chr6_28905679_-	ncRNA_exonic
CAediting_467003	chr6_28905957_-	ncRNA_exonic
CAediting_467004	chr6_28905963_-	ncRNA_exonic
CAediting_467005	chr6_28905975_-	ncRNA_exonic
CAediting_467006	chr6_28905985_-	ncRNA_exonic
CAediting_467007	chr6_28905999_-	ncRNA_exonic
CAediting_467008	chr6_28906002_-	ncRNA_exonic
CAediting_467009	chr6_28906015_-	ncRNA_exonic
CAediting_467010	chr6_28906016_-	ncRNA_exonic
CAediting_467011	chr6_28906017_-	ncRNA_exonic
CAediting_467012	chr6_28906068_-	ncRNA_exonic
CAediting_467013	chr6_28906075_-	ncRNA_exonic
CAediting_467014	chr6_28906079_-	ncRNA_exonic
CAediting_467015	chr6_28906085_-	ncRNA_exonic
CAediting_467016	chr6_28906091_-	ncRNA_exonic
CAediting_467017	chr6_28906103_-	ncRNA_exonic
CAediting_467018	chr6_28906120_-	ncRNA_exonic
CAediting_467019	chr6_28906121_-	ncRNA_exonic
CAediting_467020	chr6_28906133_-	ncRNA_exonic
CAediting_467021	chr6_28906141_-	ncRNA_exonic
CAediting_467022	chr6_28906151_-	ncRNA_exonic
CAediting_467023	chr6_28906159_-	ncRNA_exonic
CAediting_467024	chr6_28906177_-	ncRNA_exonic
CAediting_467025	chr6_28909193_-	ncRNA_intronic
CAediting_467026	chr6_28909204_-	ncRNA_intronic
CAediting_467027	chr6_28909213_-	ncRNA_intronic
CAediting_467028	chr6_28909214_-	ncRNA_intronic
CAediting_467029	chr6_28909219_-	ncRNA_intronic
CAediting_467030	chr6_28910009_-	ncRNA_intronic
CAediting_467031	chr6_28910027_-	ncRNA_intronic
CAediting_467032	chr6_28910047_-	ncRNA_intronic
CAediting_467033	chr6_28910051_-	ncRNA_intronic
CAediting_467034	chr6_28910062_-	ncRNA_intronic
CAediting_467035	chr6_28910081_-	ncRNA_intronic
CAediting_467036	chr6_28910101_-	ncRNA_intronic
CAediting_467037	chr6_28910597_-	ncRNA_intronic
CAediting_467038	chr6_28910602_-	ncRNA_intronic
CAediting_467039	chr6_28912234_-	ncRNA_intronic
CAediting_467040	chr6_28912248_-	ncRNA_intronic
CAediting_467041	chr6_28912274_-	ncRNA_intronic
CAediting_467042	chr6_28912278_-	ncRNA_intronic
CAediting_467043	chr6_28912287_-	ncRNA_intronic
CAediting_467044	chr6_28912288_-	ncRNA_intronic
CAediting_467045	chr6_28912289_-	ncRNA_intronic
CAediting_467046	chr6_28912306_-	ncRNA_intronic
CAediting_467047	chr6_28912328_-	ncRNA_intronic
CAediting_467048	chr6_28912329_-	ncRNA_intronic
CAediting_467049	chr6_28912337_-	ncRNA_intronic
CAediting_467050	chr6_28912342_-	ncRNA_intronic
CAediting_467051	chr6_28912999_-	ncRNA_intronic
CAediting_467052	chr6_28913012_-	ncRNA_intronic
CAediting_467053	chr6_28913093_-	ncRNA_intronic
CAediting_467054	chr6_28913172_-	ncRNA_intronic
CAediting_467055	chr6_28913173_-	ncRNA_intronic
CAediting_467056	chr6_28914051_-	ncRNA_intronic
CAediting_467057	chr6_28914052_-	ncRNA_intronic
CAediting_467058	chr6_28914149_-	ncRNA_intronic
CAediting_467059	chr6_28914166_-	ncRNA_intronic
CAediting_467060	chr6_28914196_-	ncRNA_intronic
CAediting_467061	chr6_28914212_-	ncRNA_intronic
CAediting_467062	chr6_28914218_-	ncRNA_intronic
CAediting_467063	chr6_28914231_-	ncRNA_intronic
CAediting_467064	chr6_28914273_-	ncRNA_intronic
CAediting_467065	chr6_28914299_-	ncRNA_intronic
CAediting_467066	chr6_28914362_-	ncRNA_intronic
CAediting_467067	chr6_28914381_-	ncRNA_intronic
CAediting_467068	chr6_28914402_-	ncRNA_intronic
CAediting_467069	chr6_28914407_-	ncRNA_intronic
CAediting_467070	chr6_28914408_-	ncRNA_intronic
CAediting_467071	chr6_28915485_-	ncRNA_intronic
CAediting_467072	chr6_28915487_-	ncRNA_intronic
CAediting_467073	chr6_28915497_-	ncRNA_intronic
CAediting_467074	chr6_28915509_-	ncRNA_intronic
CAediting_467075	chr6_28915551_-	ncRNA_intronic
CAediting_467076	chr6_28915556_-	ncRNA_intronic
CAediting_467077	chr6_28915557_-	ncRNA_intronic
CAediting_467078	chr6_28915596_-	ncRNA_intronic
CAediting_467079	chr6_28916296_-	ncRNA_intronic
CAediting_467080	chr6_28916356_-	ncRNA_intronic
CAediting_467081	chr6_28916430_-	ncRNA_intronic
CAediting_467082	chr6_28916469_-	ncRNA_intronic
CAediting_467083	chr6_28916551_-	ncRNA_intronic
CAediting_467084	chr6_28916897_-	ncRNA_intronic
CAediting_467085	chr6_28916925_-	ncRNA_intronic
CAediting_467086	chr6_28917018_-	ncRNA_intronic
CAediting_467087	chr6_28917020_-	ncRNA_intronic
CAediting_467088	chr6_28917042_-	ncRNA_intronic
CAediting_467089	chr6_28917874_-	ncRNA_intronic
CAediting_467090	chr6_28917965_-	ncRNA_intronic
CAediting_467091	chr6_28917995_-	ncRNA_intronic
CAediting_467092	chr6_28918093_-	ncRNA_intronic
CAediting_467093	chr6_28918098_-	ncRNA_intronic
CAediting_467094	chr6_28918621_-	ncRNA_intronic
CAediting_467095	chr6_28918633_-	ncRNA_intronic
CAediting_467096	chr6_28919123_-	ncRNA_intronic
CAediting_467097	chr6_28919145_-	ncRNA_intronic
CAediting_467098	chr6_28919151_-	ncRNA_intronic
CAediting_467099	chr6_28919175_-	ncRNA_intronic
CAediting_467100	chr6_28919181_-	ncRNA_intronic
CAediting_467101	chr6_28919186_-	ncRNA_intronic
CAediting_467102	chr6_28919190_-	ncRNA_intronic
CAediting_467103	chr6_28919204_-	ncRNA_intronic
CAediting_467104	chr6_28919230_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_466978	chr6_28904955_-	SINE	Alu	AluJr4
CAediting_466979	chr6_28904973_-	SINE	Alu	AluJr4
CAediting_466980	chr6_28904975_-	SINE	Alu	AluJr4
CAediting_466981	chr6_28904978_-	SINE	Alu	AluJr4
CAediting_466982	chr6_28904984_-	SINE	Alu	AluJr4
CAediting_466983	chr6_28905002_-	SINE	Alu	AluJr4
CAediting_466984	chr6_28905015_-	SINE	Alu	AluJr4
CAediting_466985	chr6_28905019_-	SINE	Alu	AluJr4
CAediting_466986	chr6_28905021_-	SINE	Alu	AluJr4
CAediting_466987	chr6_28905028_-	SINE	Alu	AluJr4
CAediting_466988	chr6_28905041_-	SINE	Alu	AluJr4
CAediting_466989	chr6_28905045_-	SINE	Alu	AluJr4
CAediting_466990	chr6_28905053_-	SINE	Alu	AluJr4
CAediting_466991	chr6_28905057_-	SINE	Alu	AluJr4
CAediting_466992	chr6_28905064_-	SINE	Alu	AluJr4
CAediting_466993	chr6_28905075_-	SINE	Alu	AluJr4
CAediting_466994	chr6_28905087_-	SINE	Alu	AluJr4
CAediting_466995	chr6_28905089_-	SINE	Alu	AluJr4
CAediting_466996	chr6_28905128_-	SINE	Alu	AluJr4
CAediting_466997	chr6_28905136_-	SINE	Alu	AluJr4
CAediting_466998	chr6_28905153_-	SINE	Alu	AluJr4
CAediting_466999	chr6_28905165_-	SINE	Alu	AluJr4
CAediting_467000	chr6_28905183_-	SINE	Alu	AluJr4
CAediting_467001	chr6_28905671_-	SINE	Alu	FRAM
CAediting_467002	chr6_28905679_-	SINE	Alu	FRAM
CAediting_467003	chr6_28905957_-	SINE	Alu	AluJo
CAediting_467004	chr6_28905963_-	SINE	Alu	AluJo
CAediting_467005	chr6_28905975_-	SINE	Alu	AluJo
CAediting_467006	chr6_28905985_-	SINE	Alu	AluJo
CAediting_467007	chr6_28905999_-	SINE	Alu	AluJo
CAediting_467008	chr6_28906002_-	SINE	Alu	AluJo
CAediting_467009	chr6_28906015_-	SINE	Alu	AluJo
CAediting_467010	chr6_28906016_-	SINE	Alu	AluJo
CAediting_467011	chr6_28906017_-	SINE	Alu	AluJo
CAediting_467012	chr6_28906068_-	SINE	Alu	AluJo
CAediting_467013	chr6_28906075_-	SINE	Alu	AluJo
CAediting_467014	chr6_28906079_-	SINE	Alu	AluJo
CAediting_467015	chr6_28906085_-	SINE	Alu	AluJo
CAediting_467016	chr6_28906091_-	SINE	Alu	AluJo
CAediting_467017	chr6_28906103_-	SINE	Alu	AluJo
CAediting_467018	chr6_28906120_-	SINE	Alu	AluJo
CAediting_467019	chr6_28906121_-	SINE	Alu	AluJo
CAediting_467020	chr6_28906133_-	SINE	Alu	AluJo
CAediting_467021	chr6_28906141_-	SINE	Alu	AluJo
CAediting_467022	chr6_28906151_-	SINE	Alu	AluJo
CAediting_467023	chr6_28906159_-	SINE	Alu	AluJo
CAediting_467024	chr6_28906177_-	SINE	Alu	AluJo
CAediting_467025	chr6_28909193_-	SINE	Alu	AluSp
CAediting_467026	chr6_28909204_-	SINE	Alu	AluSp
CAediting_467027	chr6_28909213_-	SINE	Alu	AluSp
CAediting_467028	chr6_28909214_-	SINE	Alu	AluSp
CAediting_467029	chr6_28909219_-	SINE	Alu	AluSp
CAediting_467030	chr6_28910009_-	SINE	Alu	AluJb
CAediting_467031	chr6_28910027_-	SINE	Alu	AluJb
CAediting_467032	chr6_28910047_-	SINE	Alu	AluJb
CAediting_467033	chr6_28910051_-	SINE	Alu	AluJb
CAediting_467034	chr6_28910062_-	SINE	Alu	AluJb
CAediting_467035	chr6_28910081_-	SINE	Alu	AluJb
CAediting_467036	chr6_28910101_-	SINE	Alu	AluJb
CAediting_467037	chr6_28910597_-	SINE	Alu	AluSx
CAediting_467038	chr6_28910602_-	SINE	Alu	AluSx
CAediting_467039	chr6_28912234_-	SINE	Alu	AluSq2
CAediting_467040	chr6_28912248_-	SINE	Alu	AluSq2
CAediting_467041	chr6_28912274_-	SINE	Alu	AluSq2
CAediting_467042	chr6_28912278_-	SINE	Alu	AluSq2
CAediting_467043	chr6_28912287_-	SINE	Alu	AluSq2
CAediting_467044	chr6_28912288_-	SINE	Alu	AluSq2
CAediting_467045	chr6_28912289_-	SINE	Alu	AluSq2
CAediting_467046	chr6_28912306_-	SINE	Alu	AluSq2
CAediting_467047	chr6_28912328_-	SINE	Alu	AluSq2
CAediting_467048	chr6_28912329_-	SINE	Alu	AluSq2
CAediting_467049	chr6_28912337_-	SINE	Alu	AluSq2
CAediting_467050	chr6_28912342_-	SINE	Alu	AluSq2
CAediting_467051	chr6_28912999_-	SINE	Alu	AluSp
CAediting_467052	chr6_28913012_-	SINE	Alu	AluSp
CAediting_467053	chr6_28913093_-	SINE	Alu	AluSp
CAediting_467054	chr6_28913172_-	SINE	Alu	AluSp
CAediting_467055	chr6_28913173_-	SINE	Alu	AluSp
CAediting_467056	chr6_28914051_-	SINE	Alu	AluJo
CAediting_467057	chr6_28914052_-	SINE	Alu	AluJo
CAediting_467058	chr6_28914149_-	SINE	Alu	AluSz6
CAediting_467059	chr6_28914166_-	SINE	Alu	AluSz6
CAediting_467060	chr6_28914196_-	SINE	Alu	AluSz6
CAediting_467061	chr6_28914212_-	SINE	Alu	AluSz6
CAediting_467062	chr6_28914218_-	SINE	Alu	AluSz6
CAediting_467063	chr6_28914231_-	SINE	Alu	AluSz6
CAediting_467064	chr6_28914273_-	SINE	Alu	AluSz6
CAediting_467065	chr6_28914299_-	SINE	Alu	AluSz6
CAediting_467066	chr6_28914362_-	SINE	Alu	AluSz6
CAediting_467067	chr6_28914381_-	SINE	Alu	AluSz6
CAediting_467068	chr6_28914402_-	SINE	Alu	AluSz6
CAediting_467069	chr6_28914407_-	SINE	Alu	AluSz6
CAediting_467070	chr6_28914408_-	SINE	Alu	AluSz6
CAediting_467071	chr6_28915485_-	SINE	Alu	AluSx
CAediting_467072	chr6_28915487_-	SINE	Alu	AluSx
CAediting_467073	chr6_28915497_-	SINE	Alu	AluSx
CAediting_467074	chr6_28915509_-	SINE	Alu	AluSx
CAediting_467075	chr6_28915551_-	SINE	Alu	AluSx
CAediting_467076	chr6_28915556_-	SINE	Alu	AluSx
CAediting_467077	chr6_28915557_-	SINE	Alu	AluSx
CAediting_467078	chr6_28915596_-	SINE	Alu	AluSx
CAediting_467079	chr6_28916296_-	SINE	Alu	AluSp
CAediting_467080	chr6_28916356_-	SINE	Alu	AluSp
CAediting_467081	chr6_28916430_-	SINE	Alu	AluSp
CAediting_467082	chr6_28916469_-	SINE	Alu	AluSp
CAediting_467083	chr6_28916551_-	SINE	Alu	AluSp
CAediting_467084	chr6_28916897_-	SINE	Alu	AluJb
CAediting_467085	chr6_28916925_-	SINE	Alu	AluJb
CAediting_467086	chr6_28917018_-	SINE	Alu	AluJb
CAediting_467087	chr6_28917020_-	SINE	Alu	AluJb
CAediting_467088	chr6_28917042_-	SINE	Alu	AluJb
CAediting_467089	chr6_28917874_-	SINE	Alu	AluSp
CAediting_467090	chr6_28917965_-	SINE	Alu	AluSp
CAediting_467091	chr6_28917995_-	SINE	Alu	AluSp
CAediting_467092	chr6_28918093_-	SINE	Alu	AluSp
CAediting_467093	chr6_28918098_-	SINE	Alu	AluSp
CAediting_467094	chr6_28918621_-	SINE	Alu	AluSg
CAediting_467095	chr6_28918633_-	SINE	Alu	AluSg
CAediting_467096	chr6_28919123_-	SINE	Alu	AluSg7
CAediting_467097	chr6_28919145_-	SINE	Alu	AluSg7
CAediting_467098	chr6_28919151_-	SINE	Alu	AluSg7
CAediting_467099	chr6_28919175_-	SINE	Alu	AluSg7
CAediting_467100	chr6_28919181_-	SINE	Alu	AluSg7
CAediting_467101	chr6_28919186_-	SINE	Alu	AluSg7
CAediting_467102	chr6_28919190_-	SINE	Alu	AluSg7
CAediting_467103	chr6_28919204_-	SINE	Alu	AluSg7
CAediting_467104	chr6_28919230_-	SINE	Alu	AluSg7

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RNA A-to-I editing events in the alternative splicing sites for TRIM27

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000204713.9.TRIM27.

Correlation between RNA A-to-I editing and PSI for ENSG00000204713.9.TRIM27.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRIM27

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

STAD.CAediting_466992.ENSG00000204713.TRIM27.png
Soverview

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Protein coding region RNA A-to-I editings for TRIM27

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TRIM27

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000204713.9	ENST00000414543	hsa-miR-320e	28903742	28903748	7mer-m8	28903741	28903758	141	-12.05
CAediting_1054808	chr15_66496985_-	ENSG00000204713.9	ENST00000414543	hsa-miR-4512	28903631	28903637	7mer-m8	28903630	28903652	148	-19.11
CAediting_1229415	chr17_67471547_+	ENSG00000204713.9	ENST00000414543	hsa-miR-548aa	28903813	28903820	8mer-1a	28903813	28903837	148	-9.58
CAediting_1368054	chr19_46709310_-	ENSG00000204713.9	ENST00000377199	hsa-miR-320e	28903742	28903748	7mer-m8	28903741	28903758	141	-12.05
CAediting_1054808	chr15_66496985_-	ENSG00000204713.9	ENST00000377199	hsa-miR-4512	28903631	28903637	7mer-m8	28903630	28903652	148	-19.11
CAediting_1229415	chr17_67471547_+	ENSG00000204713.9	ENST00000377199	hsa-miR-548aa	28903813	28903820	8mer-1a	28903813	28903837	148	-9.58
CAediting_1368054	chr19_46709310_-	ENSG00000204713.9	ENST00000377194	hsa-miR-320e	28903742	28903748	7mer-m8	28903741	28903758	141	-12.05
CAediting_1054808	chr15_66496985_-	ENSG00000204713.9	ENST00000377194	hsa-miR-4512	28903631	28903637	7mer-m8	28903630	28903652	148	-19.11
CAediting_1229415	chr17_67471547_+	ENSG00000204713.9	ENST00000377194	hsa-miR-548aa	28903813	28903820	8mer-1a	28903813	28903837	148	-9.58

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TRIM27

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000481474.4	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_466978	ENST00000481474.4	chr6_28904955_-	-2397.60	-2391.00	-2456.20
CAediting_466979	ENST00000481474.4	chr6_28904973_-	-2394.80	-2391.00	-2456.20
CAediting_466980	ENST00000481474.4	chr6_28904975_-	-2389.70	-2391.00	-2456.20
CAediting_466981	ENST00000481474.4	chr6_28904978_-	-2391.30	-2391.00	-2456.20
CAediting_466982	ENST00000481474.4	chr6_28904984_-	-2397.70	-2391.00	-2456.20
CAediting_466983	ENST00000481474.4	chr6_28905002_-	-2390.10	-2391.00	-2456.20
CAediting_466984	ENST00000481474.4	chr6_28905015_-	-2390.60	-2391.00	-2456.20
CAediting_466985	ENST00000481474.4	chr6_28905019_-	-2397.90	-2391.00	-2456.20
CAediting_466986	ENST00000481474.4	chr6_28905021_-	-2390.10	-2391.00	-2456.20
CAediting_466987	ENST00000481474.4	chr6_28905028_-	-2391.00	-2391.00	-2456.20
CAediting_466988	ENST00000481474.4	chr6_28905041_-	-2391.00	-2391.00	-2456.20
CAediting_466989	ENST00000481474.4	chr6_28905045_-	-2390.30	-2391.00	-2456.20
CAediting_466990	ENST00000481474.4	chr6_28905053_-	-2397.20	-2391.00	-2456.20
CAediting_466991	ENST00000481474.4	chr6_28905057_-	-2394.80	-2391.00	-2456.20
CAediting_466992	ENST00000481474.4	chr6_28905064_-	-2397.60	-2391.00	-2456.20
CAediting_466993	ENST00000481474.4	chr6_28905075_-	-2391.00	-2391.00	-2456.20
CAediting_466994	ENST00000481474.4	chr6_28905087_-	-2391.10	-2391.00	-2456.20
CAediting_466995	ENST00000481474.4	chr6_28905089_-	-2391.10	-2391.00	-2456.20
CAediting_466996	ENST00000481474.4	chr6_28905128_-	-2393.50	-2391.00	-2456.20
CAediting_466997	ENST00000481474.4	chr6_28905136_-	-2397.60	-2391.00	-2456.20
CAediting_466998	ENST00000481474.4	chr6_28905153_-	-2390.10	-2391.00	-2456.20
CAediting_466999	ENST00000481474.4	chr6_28905165_-	-2390.70	-2391.00	-2456.20
CAediting_467000	ENST00000481474.4	chr6_28905183_-	-2391.00	-2391.00	-2456.20
CAediting_467001	ENST00000481474.4	chr6_28905671_-	-2389.70	-2391.00	-2456.20
CAediting_467002	ENST00000481474.4	chr6_28905679_-	-2390.60	-2391.00	-2456.20
CAediting_467003	ENST00000481474.4	chr6_28905957_-	-2390.60	-2391.00	-2456.20
CAediting_467004	ENST00000481474.4	chr6_28905963_-	-2391.00	-2391.00	-2456.20
CAediting_467005	ENST00000481474.4	chr6_28905975_-	-2390.70	-2391.00	-2456.20
CAediting_467006	ENST00000481474.4	chr6_28905985_-	-2390.20	-2391.00	-2456.20
CAediting_467007	ENST00000481474.4	chr6_28905999_-	-2390.70	-2391.00	-2456.20
CAediting_467008	ENST00000481474.4	chr6_28906002_-	-2390.70	-2391.00	-2456.20
CAediting_467009	ENST00000481474.4	chr6_28906015_-	-2391.00	-2391.00	-2456.20
CAediting_467010	ENST00000481474.4	chr6_28906016_-	-2391.30	-2391.00	-2456.20
CAediting_467011	ENST00000481474.4	chr6_28906017_-	-2397.00	-2391.00	-2456.20
CAediting_467012	ENST00000481474.4	chr6_28906068_-	-2391.30	-2391.00	-2456.20
CAediting_467013	ENST00000481474.4	chr6_28906075_-	-2395.20	-2391.00	-2456.20
CAediting_467014	ENST00000481474.4	chr6_28906079_-	-2391.00	-2391.00	-2456.20
CAediting_467015	ENST00000481474.4	chr6_28906085_-	-2397.90	-2391.00	-2456.20
CAediting_467016	ENST00000481474.4	chr6_28906091_-	-2390.70	-2391.00	-2456.20
CAediting_467017	ENST00000481474.4	chr6_28906103_-	-2391.00	-2391.00	-2456.20
CAediting_467018	ENST00000481474.4	chr6_28906120_-	-2397.60	-2391.00	-2456.20
CAediting_467019	ENST00000481474.4	chr6_28906121_-	-2390.30	-2391.00	-2456.20
CAediting_467020	ENST00000481474.4	chr6_28906133_-	-2391.20	-2391.00	-2456.20
CAediting_467021	ENST00000481474.4	chr6_28906141_-	-2390.90	-2391.00	-2456.20
CAediting_467022	ENST00000481474.4	chr6_28906151_-	-2390.70	-2391.00	-2456.20
CAediting_467023	ENST00000481474.4	chr6_28906159_-	-2395.20	-2391.00	-2456.20
CAediting_467024	ENST00000481474.4	chr6_28906177_-	-2391.00	-2391.00	-2456.20

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Relation with ADAR for TRIM27

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
ESCA	CAediting_466990	chr6_28905053_-	.	.	0.0323858268340965	0.294371869929352	.	.
BRCA	CAediting_466991	chr6_28905057_-	0.0297466680333036	0.276254099629026	.	.	.	.
BRCA	CAediting_467031	chr6_28910027_-	0.00981619260323672	0.342293896776413	.	.	.	.

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Relation with cancer stages for TRIM27

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_467030	chr6_28910009_-	0.0363390813594379	0.191308053141484
OV	clinical_stage	CAediting_466990	chr6_28905053_-	0.0263945195253891	0.207062055599653
STAD	pathologic_stage	CAediting_466979	chr6_28904973_-	0.0375936308409014	0.289178613485613

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Relation with survival for TRIM27

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TRIM27

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TRIM27

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
TRIM27	C0238463	Papillary thyroid carcinoma	2	ORPHANET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene