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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: RFC4 (CAeditome ID:5984) |
Gene summary for RFC4 |
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Gene information | Gene symbol | RFC4 | Gene ID | 5984 |
Gene name | replication factor C subunit 4 | |
Synonyms | A1|RFC37 | |
Cytomap | 3q27.3 | |
Type of gene | protein-coding | |
Description | replication factor C subunit 4A1 37 kDa subunitRF-C 37 kDa subunitRFC 37 kDa subunitactivator 1 37 kDa subunitactivator 1 subunit 4replication factor C (activator 1) 4, 37kDareplication factor C 37 kDa subunit | |
Modification date | 20210518 | |
UniProtAcc | P35249 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
RFC4 | GO:0003689 | Replication factor C subunit 4 | 12930902 |
RFC4 | GO:0017116 | Replication factor C subunit 4 | 12930902 |
RFC4 | GO:1900264 | Replication factor C subunit 4 | 12930902 |
RFC4 | GO:0005654 | Replication factor C subunit 4 | 0000052 |
RFC4 | GO:0005663 | Replication factor C subunit 4 | 9488738 |
RFC4 | GO:0031390 | Replication factor C subunit 4 | 12930902 |
RFC4 | GO:0031391 | Replication factor C subunit 4 | 23277426 |
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RNA A-to-I events for RFC4 |
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CAediting_332129(186790066, -), CAediting_332130(186790690, -), CAediting_332131(186791763, -), CAediting_332132(186795097, -), CAediting_332133(186795102, -), CAediting_332134(186795107, -), CAediting_332135(186795120, -), CAediting_332136(186795121, -), CAediting_332137(186795125, -), CAediting_332138(186795126, -), CAediting_332139(186795137, -), CAediting_332140(186795145, -), CAediting_332141(186795165, -), CAediting_332142(186795204, -), CAediting_332143(186795205, -), CAediting_332144(186795218, -), CAediting_332145(186795270, -), CAediting_332146(186803329, -), CAediting_332147(186803671, -), CAediting_332148(186803755, -), CAediting_332149(186803762, -), CAediting_332150(186804126, -), CAediting_332151(186805468, -), |
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RNA editing positional annotations for RFC4 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_332129 | chr3_186790066_- | ncRNA_exonic;splicing |
CAediting_332130 | chr3_186790690_- | ncRNA_intronic |
CAediting_332131 | chr3_186791763_- | exonic |
CAediting_332132 | chr3_186795097_- | ncRNA_intronic |
CAediting_332133 | chr3_186795102_- | ncRNA_intronic |
CAediting_332134 | chr3_186795107_- | ncRNA_intronic |
CAediting_332135 | chr3_186795120_- | ncRNA_intronic |
CAediting_332136 | chr3_186795121_- | ncRNA_intronic |
CAediting_332137 | chr3_186795125_- | ncRNA_intronic |
CAediting_332138 | chr3_186795126_- | ncRNA_intronic |
CAediting_332139 | chr3_186795137_- | ncRNA_intronic |
CAediting_332140 | chr3_186795145_- | ncRNA_intronic |
CAediting_332141 | chr3_186795165_- | ncRNA_intronic |
CAediting_332142 | chr3_186795204_- | ncRNA_intronic |
CAediting_332143 | chr3_186795205_- | ncRNA_intronic |
CAediting_332144 | chr3_186795218_- | ncRNA_intronic |
CAediting_332145 | chr3_186795270_- | ncRNA_intronic |
CAediting_332146 | chr3_186803329_- | ncRNA_intronic |
CAediting_332147 | chr3_186803671_- | ncRNA_intronic |
CAediting_332148 | chr3_186803755_- | ncRNA_intronic |
CAediting_332149 | chr3_186803762_- | ncRNA_intronic |
CAediting_332150 | chr3_186804126_- | ncRNA_intronic |
CAediting_332151 | chr3_186805468_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_332132 | chr3_186795097_- | SINE | Alu | AluJr |
CAediting_332133 | chr3_186795102_- | SINE | Alu | AluJr |
CAediting_332134 | chr3_186795107_- | SINE | Alu | AluJr |
CAediting_332135 | chr3_186795120_- | SINE | Alu | AluJr |
CAediting_332136 | chr3_186795121_- | SINE | Alu | AluJr |
CAediting_332137 | chr3_186795125_- | SINE | Alu | AluJr |
CAediting_332138 | chr3_186795126_- | SINE | Alu | AluJr |
CAediting_332139 | chr3_186795137_- | SINE | Alu | AluJr |
CAediting_332140 | chr3_186795145_- | SINE | Alu | AluJr |
CAediting_332141 | chr3_186795165_- | SINE | Alu | AluJr |
CAediting_332142 | chr3_186795204_- | SINE | Alu | AluJr |
CAediting_332143 | chr3_186795205_- | SINE | Alu | AluJr |
CAediting_332144 | chr3_186795218_- | SINE | Alu | AluJr |
CAediting_332145 | chr3_186795270_- | SINE | Alu | AluJr |
CAediting_332146 | chr3_186803329_- | SINE | Alu | AluSx |
CAediting_332147 | chr3_186803671_- | SINE | Alu | AluSz6 |
CAediting_332148 | chr3_186803755_- | SINE | Alu | AluSz6 |
CAediting_332149 | chr3_186803762_- | SINE | Alu | AluSz6 |
CAediting_332150 | chr3_186804126_- | SINE | Alu | AluSx1 |
CAediting_332151 | chr3_186805468_- | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for RFC4 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_332129 | chr3_186790066_- | 186790058:186790080 | 3SS | 0+6i | TAAATTTTTCTCGTAGGAAGTTG | -3.05 | TAAATTTTTCTCGTGGGAAGTTG | 2.91 |
IR | CAediting_332129 | chr3_186790066_- | 186790062:186790084 | 3SS | 0+2i | TTCTTAAATTTTTCTCGTAGGAA | 8.88 | TTCTTAAATTTTTCTCGTGGGAA | 0.93 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RFC4 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for RFC4 |
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The effects of the RNA editing to the miRNA binding sites for RFC4 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for RFC4 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_332131 | ENST00000296273.5 | chr3_186791763_- | -393.50 | -392.80 | -393.50 |
CAediting_332131 | ENST00000392481.5 | chr3_186791763_- | -411.60 | -411.20 | -411.60 |
CAediting_332131 | ENST00000417876.1 | chr3_186791763_- | -114.80 | -113.60 | -114.80 |
CAediting_332131 | ENST00000433496.4 | chr3_186791763_- | -288.10 | -288.10 | -288.10 |
CAediting_332129 | ENST00000479307.4 | chr3_186790066_- | -256.20 | -256.20 | -256.20 |
CAediting_332131 | ENST00000479307.4 | chr3_186791763_- | -256.20 | -256.20 | -256.20 |
CAediting_332131 | ENST00000460408.4 | chr3_186791763_- | -158.70 | -157.40 | -158.70 |
CAediting_332131 | ENST00000494047.4 | chr3_186791763_- | -413.70 | -413.70 | -413.70 |
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Relation with ADAR for RFC4 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for RFC4 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for RFC4 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for RFC4 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RFC4 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
RFC4 | C0152013 | Adenocarcinoma of lung (disorder) | 1 | CTD_human |