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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SMG1P5 (CAeditome ID:595101)

Gene summary for SMG1P5

check button Gene summary
Gene informationGene symbol

SMG1P5

Gene ID

595101

Gene nameSMG1 pseudogene 5
Synonyms-
Cytomap

16p11.2

Type of genepseudo
DescriptionSMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5smg-1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for SMG1P5

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000183604.13
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1110416(30276671, -), CAediting_1110417(30281998, -), CAediting_1110418(30282405, -), CAediting_1110419(30282406, -), CAediting_1110420(30282438, -), CAediting_1110421(30282448, -), CAediting_1110422(30282478, -), CAediting_1110423(30282494, -), CAediting_1110424(30282515, -), CAediting_1110425(30282530, -), CAediting_1110426(30282536, -), CAediting_1110427(30282539, -), CAediting_1110428(30282549, -), CAediting_1110429(30282566, -), CAediting_1110430(30282568, -), CAediting_1110431(30283230, -), CAediting_1110432(30283237, -), CAediting_1110433(30283241, -), CAediting_1110434(30283243, -), CAediting_1110435(30283247, -), CAediting_1110436(30283249, -), CAediting_1110437(30283253, -), CAediting_1110438(30283254, -), CAediting_1110439(30283255, -), CAediting_1110440(30283256, -), CAediting_1110441(30283260, -), CAediting_1110442(30283261, -), CAediting_1110443(30283262, -), CAediting_1110444(30283263, -), CAediting_1110445(30283273, -), CAediting_1110446(30283275, -), CAediting_1110447(30283278, -), CAediting_1110448(30283283, -), CAediting_1110449(30283293, -), CAediting_1110450(30283303, -), CAediting_1110451(30283306, -), CAediting_1110452(30283308, -), CAediting_1110453(30283311, -), CAediting_1110454(30283313, -), CAediting_1110455(30283318, -), CAediting_1110456(30283322, -), CAediting_1110457(30283334, -), CAediting_1110458(30283335, -), CAediting_1110459(30283342, -), CAediting_1110460(30283343, -), CAediting_1110461(30283351, -), CAediting_1110462(30283354, -), CAediting_1110463(30283357, -), CAediting_1110464(30283361, -), CAediting_1110465(30283374, -), CAediting_1110466(30283378, -), CAediting_1110467(30283383, -), CAediting_1110468(30283384, -), CAediting_1110469(30283390, -), CAediting_1110470(30283406, -), CAediting_1110471(30283410, -), CAediting_1110472(30283413, -), CAediting_1110473(30283414, -), CAediting_1110474(30283419, -), CAediting_1110475(30283422, -), CAediting_1110476(30283423, -), CAediting_1110477(30283428, -), CAediting_1110478(30283439, -), CAediting_1110479(30283440, -), CAediting_1110480(30283459, -), CAediting_1110481(30283462, -), CAediting_1110482(30283464, -), CAediting_1110483(30283470, -), CAediting_1110484(30283473, -), CAediting_1110485(30283483, -), CAediting_1110486(30283502, -), CAediting_1110487(30283510, -), CAediting_1110488(30283513, -), CAediting_1110489(30283517, -), CAediting_1110490(30283518, -), CAediting_1110491(30283519, -), CAediting_1110492(30283525, -), CAediting_1110493(30283537, -), CAediting_1110494(30283702, -), CAediting_1110495(30283709, -), CAediting_1110496(30283711, -), CAediting_1110497(30283723, -), CAediting_1110498(30283724, -), CAediting_1110499(30283733, -), CAediting_1110500(30283763, -), CAediting_1110501(30283764, -), CAediting_1110502(30283788, -), CAediting_1110503(30283800, -), CAediting_1110504(30283802, -), CAediting_1110505(30283805, -), CAediting_1110506(30283819, -), CAediting_1110507(30283820, -), CAediting_1110508(30283846, -), CAediting_1110509(30283856, -), CAediting_1110510(30283868, -), CAediting_1110511(30283881, -), CAediting_1110512(30283882, -), CAediting_1110513(30283885, -), CAediting_1110514(30283911, -), CAediting_1110515(30283935, -), CAediting_1110516(30283946, -), CAediting_1110517(30283963, -), CAediting_1110518(30283986, -), CAediting_1110519(30283987, -), CAediting_1110520(30283988, -), CAediting_1110521(30283989, -), CAediting_1110522(30283990, -), CAediting_1110523(30283991, -), CAediting_1110524(30284005, -), CAediting_1110525(30284028, -), CAediting_1110526(30284034, -), CAediting_1110527(30284035, -), CAediting_1110528(30284044, -), CAediting_1110529(30284047, -), CAediting_1110530(30284048, -), CAediting_1110531(30284415, -), CAediting_1110532(30284428, -), CAediting_1110533(30284484, -), CAediting_1110534(30284506, -), CAediting_1110535(30284550, -), CAediting_1110536(30284564, -), CAediting_1110537(30284572, -), CAediting_1110538(30284589, -), CAediting_1110539(30284590, -), CAediting_1110540(30284633, -), CAediting_1110541(30294909, -), CAediting_1110542(30294919, -), CAediting_1110543(30294969, -), CAediting_1110544(30296594, -), CAediting_1110545(30297967, -), CAediting_1110546(30301064, -), CAediting_1110547(30301065, -), CAediting_1110548(30314718, -), CAediting_1110549(30316481, -), CAediting_1110550(30317328, -), CAediting_1110551(30328525, -),

Top

RNA editing positional annotations for SMG1P5 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1110416chr16_30276671_-ncRNA_intronic
CAediting_1110417chr16_30281998_-ncRNA_intronic
CAediting_1110418chr16_30282405_-ncRNA_intronic
CAediting_1110419chr16_30282406_-ncRNA_intronic
CAediting_1110420chr16_30282438_-ncRNA_intronic
CAediting_1110421chr16_30282448_-ncRNA_intronic
CAediting_1110422chr16_30282478_-ncRNA_intronic
CAediting_1110423chr16_30282494_-ncRNA_intronic
CAediting_1110424chr16_30282515_-ncRNA_intronic
CAediting_1110425chr16_30282530_-ncRNA_intronic
CAediting_1110426chr16_30282536_-ncRNA_intronic
CAediting_1110427chr16_30282539_-ncRNA_intronic
CAediting_1110428chr16_30282549_-ncRNA_intronic
CAediting_1110429chr16_30282566_-ncRNA_intronic
CAediting_1110430chr16_30282568_-ncRNA_intronic
CAediting_1110431chr16_30283230_-ncRNA_intronic
CAediting_1110432chr16_30283237_-ncRNA_intronic
CAediting_1110433chr16_30283241_-ncRNA_intronic
CAediting_1110434chr16_30283243_-ncRNA_intronic
CAediting_1110435chr16_30283247_-ncRNA_intronic
CAediting_1110436chr16_30283249_-ncRNA_intronic
CAediting_1110437chr16_30283253_-ncRNA_intronic
CAediting_1110438chr16_30283254_-ncRNA_intronic
CAediting_1110439chr16_30283255_-ncRNA_intronic
CAediting_1110440chr16_30283256_-ncRNA_intronic
CAediting_1110441chr16_30283260_-ncRNA_intronic
CAediting_1110442chr16_30283261_-ncRNA_intronic
CAediting_1110443chr16_30283262_-ncRNA_intronic
CAediting_1110444chr16_30283263_-ncRNA_intronic
CAediting_1110445chr16_30283273_-ncRNA_intronic
CAediting_1110446chr16_30283275_-ncRNA_intronic
CAediting_1110447chr16_30283278_-ncRNA_intronic
CAediting_1110448chr16_30283283_-ncRNA_intronic
CAediting_1110449chr16_30283293_-ncRNA_intronic
CAediting_1110450chr16_30283303_-ncRNA_intronic
CAediting_1110451chr16_30283306_-ncRNA_intronic
CAediting_1110452chr16_30283308_-ncRNA_intronic
CAediting_1110453chr16_30283311_-ncRNA_intronic
CAediting_1110454chr16_30283313_-ncRNA_intronic
CAediting_1110455chr16_30283318_-ncRNA_intronic
CAediting_1110456chr16_30283322_-ncRNA_intronic
CAediting_1110457chr16_30283334_-ncRNA_intronic
CAediting_1110458chr16_30283335_-ncRNA_intronic
CAediting_1110459chr16_30283342_-ncRNA_intronic
CAediting_1110460chr16_30283343_-ncRNA_intronic
CAediting_1110461chr16_30283351_-ncRNA_intronic
CAediting_1110462chr16_30283354_-ncRNA_intronic
CAediting_1110463chr16_30283357_-ncRNA_intronic
CAediting_1110464chr16_30283361_-ncRNA_intronic
CAediting_1110465chr16_30283374_-ncRNA_intronic
CAediting_1110466chr16_30283378_-ncRNA_intronic
CAediting_1110467chr16_30283383_-ncRNA_intronic
CAediting_1110468chr16_30283384_-ncRNA_intronic
CAediting_1110469chr16_30283390_-ncRNA_intronic
CAediting_1110470chr16_30283406_-ncRNA_intronic
CAediting_1110471chr16_30283410_-ncRNA_intronic
CAediting_1110472chr16_30283413_-ncRNA_intronic
CAediting_1110473chr16_30283414_-ncRNA_intronic
CAediting_1110474chr16_30283419_-ncRNA_intronic
CAediting_1110475chr16_30283422_-ncRNA_intronic
CAediting_1110476chr16_30283423_-ncRNA_intronic
CAediting_1110477chr16_30283428_-ncRNA_intronic
CAediting_1110478chr16_30283439_-ncRNA_intronic
CAediting_1110479chr16_30283440_-ncRNA_intronic
CAediting_1110480chr16_30283459_-ncRNA_intronic
CAediting_1110481chr16_30283462_-ncRNA_intronic
CAediting_1110482chr16_30283464_-ncRNA_intronic
CAediting_1110483chr16_30283470_-ncRNA_intronic
CAediting_1110484chr16_30283473_-ncRNA_intronic
CAediting_1110485chr16_30283483_-ncRNA_intronic
CAediting_1110486chr16_30283502_-ncRNA_intronic
CAediting_1110487chr16_30283510_-ncRNA_intronic
CAediting_1110488chr16_30283513_-ncRNA_intronic
CAediting_1110489chr16_30283517_-ncRNA_intronic
CAediting_1110490chr16_30283518_-ncRNA_intronic
CAediting_1110491chr16_30283519_-ncRNA_intronic
CAediting_1110492chr16_30283525_-ncRNA_intronic
CAediting_1110493chr16_30283537_-ncRNA_intronic
CAediting_1110494chr16_30283702_-ncRNA_intronic
CAediting_1110495chr16_30283709_-ncRNA_intronic
CAediting_1110496chr16_30283711_-ncRNA_intronic
CAediting_1110497chr16_30283723_-ncRNA_intronic
CAediting_1110498chr16_30283724_-ncRNA_intronic
CAediting_1110499chr16_30283733_-ncRNA_intronic
CAediting_1110500chr16_30283763_-ncRNA_intronic
CAediting_1110501chr16_30283764_-ncRNA_intronic
CAediting_1110502chr16_30283788_-ncRNA_intronic
CAediting_1110503chr16_30283800_-ncRNA_intronic
CAediting_1110504chr16_30283802_-ncRNA_intronic
CAediting_1110505chr16_30283805_-ncRNA_intronic
CAediting_1110506chr16_30283819_-ncRNA_intronic
CAediting_1110507chr16_30283820_-ncRNA_intronic
CAediting_1110508chr16_30283846_-ncRNA_intronic
CAediting_1110509chr16_30283856_-ncRNA_intronic
CAediting_1110510chr16_30283868_-ncRNA_intronic
CAediting_1110511chr16_30283881_-ncRNA_intronic
CAediting_1110512chr16_30283882_-ncRNA_intronic
CAediting_1110513chr16_30283885_-ncRNA_intronic
CAediting_1110514chr16_30283911_-ncRNA_intronic
CAediting_1110515chr16_30283935_-ncRNA_intronic
CAediting_1110516chr16_30283946_-ncRNA_intronic
CAediting_1110517chr16_30283963_-ncRNA_intronic
CAediting_1110518chr16_30283986_-ncRNA_intronic
CAediting_1110519chr16_30283987_-ncRNA_intronic
CAediting_1110520chr16_30283988_-ncRNA_intronic
CAediting_1110521chr16_30283989_-ncRNA_intronic
CAediting_1110522chr16_30283990_-ncRNA_intronic
CAediting_1110523chr16_30283991_-ncRNA_intronic
CAediting_1110524chr16_30284005_-ncRNA_intronic
CAediting_1110525chr16_30284028_-ncRNA_intronic
CAediting_1110526chr16_30284034_-ncRNA_intronic
CAediting_1110527chr16_30284035_-ncRNA_intronic
CAediting_1110528chr16_30284044_-ncRNA_intronic
CAediting_1110529chr16_30284047_-ncRNA_intronic
CAediting_1110530chr16_30284048_-ncRNA_intronic
CAediting_1110531chr16_30284415_-ncRNA_intronic
CAediting_1110532chr16_30284428_-ncRNA_intronic
CAediting_1110533chr16_30284484_-ncRNA_intronic
CAediting_1110534chr16_30284506_-ncRNA_intronic
CAediting_1110535chr16_30284550_-ncRNA_intronic
CAediting_1110536chr16_30284564_-ncRNA_intronic
CAediting_1110537chr16_30284572_-ncRNA_intronic
CAediting_1110538chr16_30284589_-ncRNA_intronic
CAediting_1110539chr16_30284590_-ncRNA_intronic
CAediting_1110540chr16_30284633_-ncRNA_intronic
CAediting_1110541chr16_30294909_-ncRNA_intronic
CAediting_1110542chr16_30294919_-ncRNA_intronic
CAediting_1110543chr16_30294969_-ncRNA_intronic
CAediting_1110544chr16_30296594_-ncRNA_intronic
CAediting_1110545chr16_30297967_-ncRNA_intronic
CAediting_1110546chr16_30301064_-ncRNA_intronic
CAediting_1110547chr16_30301065_-ncRNA_intronic
CAediting_1110548chr16_30314718_-ncRNA_intronic
CAediting_1110549chr16_30316481_-ncRNA_intronic
CAediting_1110550chr16_30317328_-ncRNA_intronic
CAediting_1110551chr16_30328525_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1110416chr16_30276671_-SINEAluAluSx1
CAediting_1110417chr16_30281998_-SINEAluAluSz6
CAediting_1110418chr16_30282405_-SINEAluAluSx1
CAediting_1110419chr16_30282406_-SINEAluAluSx1
CAediting_1110420chr16_30282438_-SINEAluAluSx1
CAediting_1110421chr16_30282448_-SINEAluAluSx1
CAediting_1110422chr16_30282478_-SINEAluAluSx1
CAediting_1110423chr16_30282494_-SINEAluAluSx1
CAediting_1110424chr16_30282515_-SINEAluAluSx1
CAediting_1110425chr16_30282530_-SINEAluAluSx1
CAediting_1110426chr16_30282536_-SINEAluAluSx1
CAediting_1110427chr16_30282539_-SINEAluAluSx1
CAediting_1110428chr16_30282549_-SINEAluAluSx1
CAediting_1110429chr16_30282566_-SINEAluAluSx1
CAediting_1110430chr16_30282568_-SINEAluAluSx1
CAediting_1110432chr16_30283237_-SINEAluAluSz
CAediting_1110433chr16_30283241_-SINEAluAluSz
CAediting_1110434chr16_30283243_-SINEAluAluSz
CAediting_1110435chr16_30283247_-SINEAluAluSz
CAediting_1110436chr16_30283249_-SINEAluAluSz
CAediting_1110437chr16_30283253_-SINEAluAluSz
CAediting_1110438chr16_30283254_-SINEAluAluSz
CAediting_1110439chr16_30283255_-SINEAluAluSz
CAediting_1110440chr16_30283256_-SINEAluAluSz
CAediting_1110441chr16_30283260_-SINEAluAluSz
CAediting_1110442chr16_30283261_-SINEAluAluSz
CAediting_1110443chr16_30283262_-SINEAluAluSz
CAediting_1110444chr16_30283263_-SINEAluAluSz
CAediting_1110445chr16_30283273_-SINEAluAluSz
CAediting_1110446chr16_30283275_-SINEAluAluSz
CAediting_1110447chr16_30283278_-SINEAluAluSz
CAediting_1110448chr16_30283283_-SINEAluAluSz
CAediting_1110449chr16_30283293_-SINEAluAluSz
CAediting_1110450chr16_30283303_-SINEAluAluSz
CAediting_1110451chr16_30283306_-SINEAluAluSz
CAediting_1110452chr16_30283308_-SINEAluAluSz
CAediting_1110453chr16_30283311_-SINEAluAluSz
CAediting_1110454chr16_30283313_-SINEAluAluSz
CAediting_1110455chr16_30283318_-SINEAluAluSz
CAediting_1110456chr16_30283322_-SINEAluAluSz
CAediting_1110457chr16_30283334_-SINEAluAluSz
CAediting_1110458chr16_30283335_-SINEAluAluSz
CAediting_1110459chr16_30283342_-SINEAluAluSz
CAediting_1110460chr16_30283343_-SINEAluAluSz
CAediting_1110461chr16_30283351_-SINEAluAluSz
CAediting_1110462chr16_30283354_-SINEAluAluSz
CAediting_1110463chr16_30283357_-SINEAluAluSz
CAediting_1110464chr16_30283361_-SINEAluAluSz
CAediting_1110465chr16_30283374_-SINEAluAluSz
CAediting_1110466chr16_30283378_-SINEAluAluSz
CAediting_1110467chr16_30283383_-SINEAluAluSz
CAediting_1110468chr16_30283384_-SINEAluAluSz
CAediting_1110469chr16_30283390_-SINEAluAluSz
CAediting_1110470chr16_30283406_-SINEAluAluSz
CAediting_1110471chr16_30283410_-SINEAluAluSz
CAediting_1110472chr16_30283413_-SINEAluAluSz
CAediting_1110473chr16_30283414_-SINEAluAluSz
CAediting_1110474chr16_30283419_-SINEAluAluSz
CAediting_1110475chr16_30283422_-SINEAluAluSz
CAediting_1110476chr16_30283423_-SINEAluAluSz
CAediting_1110477chr16_30283428_-SINEAluAluSz
CAediting_1110478chr16_30283439_-SINEAluAluSz
CAediting_1110479chr16_30283440_-SINEAluAluSz
CAediting_1110480chr16_30283459_-SINEAluAluSz
CAediting_1110481chr16_30283462_-SINEAluAluSz
CAediting_1110482chr16_30283464_-SINEAluAluSz
CAediting_1110483chr16_30283470_-SINEAluAluSz
CAediting_1110484chr16_30283473_-SINEAluAluSz
CAediting_1110485chr16_30283483_-SINEAluAluSz
CAediting_1110486chr16_30283502_-SINEAluAluSz
CAediting_1110487chr16_30283510_-SINEAluAluSz
CAediting_1110488chr16_30283513_-SINEAluAluSz
CAediting_1110489chr16_30283517_-SINEAluAluSz
CAediting_1110490chr16_30283518_-SINEAluAluSz
CAediting_1110491chr16_30283519_-SINEAluAluSz
CAediting_1110492chr16_30283525_-SINEAluAluSz
CAediting_1110493chr16_30283537_-SINEAluAluSz
CAediting_1110494chr16_30283702_-SINEAluAluSx1
CAediting_1110495chr16_30283709_-SINEAluAluSx1
CAediting_1110496chr16_30283711_-SINEAluAluSx1
CAediting_1110497chr16_30283723_-SINEAluAluSx1
CAediting_1110498chr16_30283724_-SINEAluAluSx1
CAediting_1110499chr16_30283733_-SINEAluAluSx1
CAediting_1110500chr16_30283763_-SINEAluAluSx1
CAediting_1110501chr16_30283764_-SINEAluAluSx1
CAediting_1110502chr16_30283788_-SINEAluAluSx1
CAediting_1110503chr16_30283800_-SINEAluAluSx1
CAediting_1110504chr16_30283802_-SINEAluAluSx1
CAediting_1110505chr16_30283805_-SINEAluAluSx1
CAediting_1110506chr16_30283819_-SINEAluAluSx1
CAediting_1110507chr16_30283820_-SINEAluAluSx1
CAediting_1110508chr16_30283846_-SINEAluAluSx1
CAediting_1110509chr16_30283856_-SINEAluAluSx1
CAediting_1110510chr16_30283868_-SINEAluAluSx1
CAediting_1110511chr16_30283881_-SINEAluAluSx1
CAediting_1110512chr16_30283882_-SINEAluAluSx1
CAediting_1110513chr16_30283885_-SINEAluAluSx1
CAediting_1110514chr16_30283911_-SINEAluAluSx1
CAediting_1110515chr16_30283935_-SINEAluAluSx1
CAediting_1110516chr16_30283946_-SINEAluAluSx1
CAediting_1110517chr16_30283963_-SINEAluAluSx1
CAediting_1110525chr16_30284028_-DNATcMar-TiggerTigger4b
CAediting_1110526chr16_30284034_-DNATcMar-TiggerTigger4b
CAediting_1110527chr16_30284035_-DNATcMar-TiggerTigger4b
CAediting_1110528chr16_30284044_-DNATcMar-TiggerTigger4b
CAediting_1110529chr16_30284047_-DNATcMar-TiggerTigger4b
CAediting_1110530chr16_30284048_-DNATcMar-TiggerTigger4b
CAediting_1110531chr16_30284415_-SINEAluAluSq2
CAediting_1110532chr16_30284428_-SINEAluAluSq2
CAediting_1110533chr16_30284484_-SINEAluAluSq2
CAediting_1110534chr16_30284506_-SINEAluAluSq2
CAediting_1110535chr16_30284550_-SINEAluAluSq2
CAediting_1110536chr16_30284564_-SINEAluAluSq2
CAediting_1110537chr16_30284572_-SINEAluAluSq2
CAediting_1110538chr16_30284589_-SINEAluAluSq2
CAediting_1110539chr16_30284590_-SINEAluAluSq2
CAediting_1110540chr16_30284633_-SINEAluAluSq2
CAediting_1110541chr16_30294909_-SINEAluAluSz6
CAediting_1110542chr16_30294919_-SINEAluAluSz6
CAediting_1110543chr16_30294969_-SINEAluAluSz6
CAediting_1110544chr16_30296594_-SINEAluAluJb
CAediting_1110545chr16_30297967_-SINEAluAluY
CAediting_1110546chr16_30301064_-SINEAluAluJr
CAediting_1110547chr16_30301065_-SINEAluAluJr
CAediting_1110548chr16_30314718_-SINEAluAluSx1
CAediting_1110549chr16_30316481_-SINEAluFRAM
CAediting_1110550chr16_30317328_-SINEAluAluSx
CAediting_1110551chr16_30328525_-SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for SMG1P5

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000183604.13.SMG1P5.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000183604.13.SMG1P5.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SMG1P5

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SMG1P5

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for SMG1P5

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SMG1P5

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for SMG1P5

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_1110437chr16_30283253_-0.04460656456237590.267075345178432....
BRCACAediting_1110441chr16_30283260_-..0.0490088591138580.264316445788448..
BLCACAediting_1110452chr16_30283308_-7.05779365323891e-080.433557716901495....
LGGCAediting_1110452chr16_30283308_-0.006617123302295180.1789749892330270.0006310868591771050.2242052013853830.006702661488186570.178699038664937
BRCACAediting_1110452chr16_30283308_-1.85161073925009e-070.279770746012416....
LUADCAediting_1110452chr16_30283308_-0.0001657151149499440.380866312472297....
COADCAediting_1110452chr16_30283308_-0.01985699272629380.230337981642977....
LUSCCAediting_1110452chr16_30283308_-0.0007341885734068320.31581353576882....
PRADCAediting_1110452chr16_30283308_-0.01627381691374250.234016647973488....
HNSCCAediting_1110452chr16_30283308_-0.01013463250007440.268283322854989....
UCECCAediting_1110452chr16_30283308_-1.24435222846859e-070.424722378319085....
KIRPCAediting_1110452chr16_30283308_-0.02309886098273010.216504552565149....
PCPGCAediting_1110452chr16_30283308_-0.001990501548205790.32521257261169....
SKCMCAediting_1110452chr16_30283308_-0.01466716211150430.233212825653541....
THYMCAediting_1110452chr16_30283308_-0.04631615011833950.250019364456673....
LGGCAediting_1110453chr16_30283311_-..0.01909156788426350.30695975471115..
BRCACAediting_1110453chr16_30283311_-0.0006043772375180430.296856456668959....
STADCAediting_1110453chr16_30283311_-..1.13034700013908e-050.495225707705291..
UCECCAediting_1110453chr16_30283311_-0.00232883408302680.409485193416301....
BLCACAediting_1110454chr16_30283313_-0.02742516126158290.308882180454527....
BRCACAediting_1110454chr16_30283313_-0.0001429327771707390.279730519488106....
GBMCAediting_1110454chr16_30283313_-9.32457747830125e-050.519620469059901....
STADCAediting_1110454chr16_30283313_-0.007847507711300170.241614546185873....
ESCACAediting_1110454chr16_30283313_-..0.03609168214276260.26462947975455..
SKCMCAediting_1110454chr16_30283313_-0.04646627545515030.277418231648494....
BRCACAediting_1110455chr16_30283318_-0.03323185905179380.133137976105181....
LUSCCAediting_1110455chr16_30283318_-0.04898911449840450.226632204490954....
KIRPCAediting_1110455chr16_30283318_-0.04542240857173330.220243289286459....
PCPGCAediting_1110455chr16_30283318_-..0.02870310251341970.27148058540155..
BRCACAediting_1110457chr16_30283334_-0.03103505094847540.291154120560522....
STADCAediting_1110457chr16_30283334_-0.001330686553438270.264952768162661....
OVCAediting_1110457chr16_30283334_-0.01503743770405840.205879875922286....
OVCAediting_1110459chr16_30283342_-0.002555692101153350.357606298427256....
OVCAediting_1110468chr16_30283384_-0.01671927132606610.333669719629904....
BRCACAediting_1110478chr16_30283439_-1.23405378908094e-060.371374340366598....
BRCACAediting_1110484chr16_30283473_-0.009690054587426980.239261050582402....
BRCACAediting_1110493chr16_30283537_-0.0001802850070156980.496676230793735....
OVCAediting_1110496chr16_30283711_-0.04225483209191750.267623349027745....
OVCAediting_1110498chr16_30283724_-0.003088181566862610.364235864941694....
OVCAediting_1110526chr16_30284034_-0.001532507351621580.294691726061798....
BRCACAediting_1110527chr16_30284035_-0.005018966544371770.346614489116601....
BRCACAediting_1110528chr16_30284044_-5.68215760544137e-050.398899840233142....
OVCAediting_1110528chr16_30284044_-0.004426930565518910.253948391293847....

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Relation with cancer stages for SMG1P5

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_1110452chr16_30283308_-0.01054072514660740.214024978987356
BLCApathologic_stageCAediting_1110455chr16_30283318_-0.03308664571073510.212264878864992
BRCApathologic_stageCAediting_1110482chr16_30283464_-0.0446914461933359-0.247975652900605
BRCApathologic_stageCAediting_1110528chr16_30284044_-0.000530427884133574-0.354292624699204
KIRPclinical_stageCAediting_1110455chr16_30283318_-0.04626904293889540.256192669269618
LUADpathologic_stageCAediting_1110455chr16_30283318_-0.03770916695910680.294764919819797
OVclinical_stageCAediting_1110465chr16_30283374_-0.01684080116816230.330129836062793
STADpathologic_stageCAediting_1110457chr16_30283334_-0.0379616476177021-0.17560128338956
THCApathologic_stageCAediting_1110452chr16_30283308_-0.004657108267906620.208882030055046
THCApathologic_stageCAediting_1110454chr16_30283313_-0.000935767840544940.406867428559987
UCECclinical_stageCAediting_1110452chr16_30283308_-0.009811161463370410.215303161049026
UCECclinical_stageCAediting_1110455chr16_30283318_-0.003019330450985180.261167847383969

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Relation with survival for SMG1P5

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
BLCACAediting_1110454chr16_30283313_-0.0003574217494449750.01620331.61571e-05
HNSCCAediting_1110455chr16_30283318_-0.003202524609617560.03231331011.99

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RelatedDrugs for SMG1P5

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SMG1P5

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource