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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: RARRES1 (CAeditome ID:5918)

Gene summary for RARRES1

check button Gene summary
Gene informationGene symbol

RARRES1

Gene ID

5918

Gene nameretinoic acid receptor responder 1
SynonymsLXNL|PERG-1|TIG1
Cytomap

3q25.32

Type of geneprotein-coding
Descriptionretinoic acid receptor responder protein 1RAR-responsive protein TIG1latexin-likephorbol ester-induced gene 1 proteinretinoic acid receptor responder (tazarotene induced) 1tazarotene-induced gene 1 protein
Modification date20210524
UniProtAcc

P49788

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for RARRES1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000118849.8

check button RNA A-to-I editing events in Cancer.
CAediting_319093(158699554, -), CAediting_319094(158699558, -), CAediting_319095(158699559, -), CAediting_319096(158699560, -), CAediting_319097(158699561, -), CAediting_319098(158699568, -), CAediting_319099(158699577, -), CAediting_319100(158699578, -), CAediting_319101(158699579, -), CAediting_319102(158699594, -), CAediting_319103(158699602, -), CAediting_319104(158699603, -), CAediting_319105(158699607, -), CAediting_319106(158699615, -), CAediting_319107(158700089, -), CAediting_319108(158700091, -), CAediting_319109(158700104, -), CAediting_319110(158700117, -), CAediting_319111(158700326, -), CAediting_319112(158700332, -), CAediting_319113(158700339, -), CAediting_319114(158700361, -), CAediting_319115(158700362, -), CAediting_319116(158700371, -), CAediting_319117(158700374, -), CAediting_319118(158702149, -), CAediting_319119(158704349, -), CAediting_319120(158705238, -), CAediting_319121(158705243, -), CAediting_319122(158705268, -), CAediting_319123(158705269, -), CAediting_319124(158705291, -), CAediting_319125(158705595, -), CAediting_319126(158706635, -), CAediting_319127(158706649, -), CAediting_319128(158706678, -), CAediting_319129(158706679, -), CAediting_319130(158706912, -), CAediting_319131(158706924, -), CAediting_319132(158706986, -), CAediting_319133(158707052, -), CAediting_319134(158710235, -), CAediting_319135(158710313, -), CAediting_319136(158711669, -), CAediting_319137(158711681, -), CAediting_319138(158711692, -), CAediting_319139(158711693, -), CAediting_319140(158712329, -), CAediting_319141(158712334, -), CAediting_319142(158718098, -), CAediting_319143(158719383, -), CAediting_319144(158719409, -), CAediting_319145(158719445, -), CAediting_319146(158719460, -), CAediting_319147(158719468, -), CAediting_319148(158719499, -), CAediting_319149(158719552, -), CAediting_319150(158719553, -), CAediting_319151(158720437, -), CAediting_319152(158720527, -), CAediting_319153(158721818, -), CAediting_319154(158721834, -), CAediting_319155(158721943, -), CAediting_319156(158721991, -), CAediting_319157(158722008, -), CAediting_319158(158722022, -), CAediting_319159(158724650, -), CAediting_319160(158724660, -), CAediting_319161(158724966, -), CAediting_319162(158725097, -), CAediting_319163(158728620, -), CAediting_319164(158728621, -), CAediting_319165(158728626, -), CAediting_319166(158728661, -), CAediting_319167(158728664, -), CAediting_319168(158729486, -), CAediting_319169(158729519, -), CAediting_319170(158729536, -), CAediting_319171(158729547, -), CAediting_319172(158729548, -), CAediting_319173(158729588, -), CAediting_319174(158729594, -), CAediting_319175(158729606, -), CAediting_319176(158729653, -), CAediting_319177(158729657, -), CAediting_319178(158729658, -), CAediting_319179(158729673, -), CAediting_319180(158730063, -), CAediting_319181(158730065, -), CAediting_319182(158730077, -), CAediting_319183(158730078, -), CAediting_319184(158730140, -), CAediting_319185(158730154, -), CAediting_319186(158730157, -), CAediting_319187(158730192, -), CAediting_319188(158730198, -), CAediting_319189(158730208, -), CAediting_319190(158730220, -), CAediting_319191(158730237, -), CAediting_319192(158730314, -), CAediting_319193(158730483, -), CAediting_319194(158730526, -), CAediting_319195(158730547, -), CAediting_319196(158730549, -), CAediting_319197(158730558, -), CAediting_319198(158730566, -), CAediting_319199(158730647, -), CAediting_319200(158730813, -), CAediting_319201(158730895, -), CAediting_319202(158731078, -),

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RNA editing positional annotations for RARRES1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_319093chr3_158699554_-ncRNA_intronic
CAediting_319094chr3_158699558_-ncRNA_intronic
CAediting_319095chr3_158699559_-ncRNA_intronic
CAediting_319096chr3_158699560_-ncRNA_intronic
CAediting_319097chr3_158699561_-ncRNA_intronic
CAediting_319098chr3_158699568_-ncRNA_intronic
CAediting_319099chr3_158699577_-ncRNA_intronic
CAediting_319100chr3_158699578_-ncRNA_intronic
CAediting_319101chr3_158699579_-ncRNA_intronic
CAediting_319102chr3_158699594_-ncRNA_intronic
CAediting_319103chr3_158699602_-ncRNA_intronic
CAediting_319104chr3_158699603_-ncRNA_intronic
CAediting_319105chr3_158699607_-ncRNA_intronic
CAediting_319106chr3_158699615_-ncRNA_intronic
CAediting_319107chr3_158700089_-ncRNA_intronic
CAediting_319108chr3_158700091_-ncRNA_intronic
CAediting_319109chr3_158700104_-ncRNA_intronic
CAediting_319110chr3_158700117_-ncRNA_intronic
CAediting_319111chr3_158700326_-ncRNA_intronic
CAediting_319112chr3_158700332_-ncRNA_intronic
CAediting_319113chr3_158700339_-ncRNA_intronic
CAediting_319114chr3_158700361_-ncRNA_intronic
CAediting_319115chr3_158700362_-ncRNA_intronic
CAediting_319116chr3_158700371_-ncRNA_intronic
CAediting_319117chr3_158700374_-ncRNA_intronic
CAediting_319118chr3_158702149_-ncRNA_intronic
CAediting_319119chr3_158704349_-ncRNA_intronic
CAediting_319120chr3_158705238_-ncRNA_intronic
CAediting_319121chr3_158705243_-ncRNA_intronic
CAediting_319122chr3_158705268_-ncRNA_intronic
CAediting_319123chr3_158705269_-ncRNA_intronic
CAediting_319124chr3_158705291_-ncRNA_intronic
CAediting_319125chr3_158705595_-ncRNA_intronic
CAediting_319126chr3_158706635_-ncRNA_intronic
CAediting_319127chr3_158706649_-ncRNA_intronic
CAediting_319128chr3_158706678_-ncRNA_intronic
CAediting_319129chr3_158706679_-ncRNA_intronic
CAediting_319130chr3_158706912_-ncRNA_intronic
CAediting_319131chr3_158706924_-ncRNA_intronic
CAediting_319132chr3_158706986_-ncRNA_intronic
CAediting_319133chr3_158707052_-ncRNA_intronic
CAediting_319134chr3_158710235_-ncRNA_intronic
CAediting_319135chr3_158710313_-ncRNA_intronic
CAediting_319136chr3_158711669_-ncRNA_intronic
CAediting_319137chr3_158711681_-ncRNA_intronic
CAediting_319138chr3_158711692_-ncRNA_intronic
CAediting_319139chr3_158711693_-ncRNA_intronic
CAediting_319140chr3_158712329_-ncRNA_intronic
CAediting_319141chr3_158712334_-ncRNA_intronic
CAediting_319142chr3_158718098_-ncRNA_intronic
CAediting_319143chr3_158719383_-ncRNA_intronic
CAediting_319144chr3_158719409_-ncRNA_intronic
CAediting_319145chr3_158719445_-ncRNA_intronic
CAediting_319146chr3_158719460_-ncRNA_intronic
CAediting_319147chr3_158719468_-ncRNA_intronic
CAediting_319148chr3_158719499_-ncRNA_intronic
CAediting_319149chr3_158719552_-ncRNA_intronic
CAediting_319150chr3_158719553_-ncRNA_intronic
CAediting_319151chr3_158720437_-ncRNA_intronic
CAediting_319152chr3_158720527_-ncRNA_intronic
CAediting_319153chr3_158721818_-ncRNA_intronic
CAediting_319154chr3_158721834_-ncRNA_intronic
CAediting_319155chr3_158721943_-ncRNA_intronic
CAediting_319156chr3_158721991_-ncRNA_intronic
CAediting_319157chr3_158722008_-ncRNA_intronic
CAediting_319158chr3_158722022_-ncRNA_intronic
CAediting_319159chr3_158724650_-ncRNA_intronic
CAediting_319160chr3_158724660_-ncRNA_intronic
CAediting_319161chr3_158724966_-ncRNA_intronic
CAediting_319162chr3_158725097_-ncRNA_intronic
CAediting_319163chr3_158728620_-ncRNA_intronic
CAediting_319164chr3_158728621_-ncRNA_intronic
CAediting_319165chr3_158728626_-ncRNA_intronic
CAediting_319166chr3_158728661_-ncRNA_intronic
CAediting_319167chr3_158728664_-ncRNA_intronic
CAediting_319168chr3_158729486_-ncRNA_intronic
CAediting_319169chr3_158729519_-ncRNA_intronic
CAediting_319170chr3_158729536_-ncRNA_intronic
CAediting_319171chr3_158729547_-ncRNA_intronic
CAediting_319172chr3_158729548_-ncRNA_intronic
CAediting_319173chr3_158729588_-ncRNA_intronic
CAediting_319174chr3_158729594_-ncRNA_intronic
CAediting_319175chr3_158729606_-ncRNA_intronic
CAediting_319176chr3_158729653_-ncRNA_intronic
CAediting_319177chr3_158729657_-ncRNA_intronic
CAediting_319178chr3_158729658_-ncRNA_intronic
CAediting_319179chr3_158729673_-ncRNA_intronic
CAediting_319180chr3_158730063_-ncRNA_intronic
CAediting_319181chr3_158730065_-ncRNA_intronic
CAediting_319182chr3_158730077_-ncRNA_intronic
CAediting_319183chr3_158730078_-ncRNA_intronic
CAediting_319184chr3_158730140_-ncRNA_intronic
CAediting_319185chr3_158730154_-ncRNA_intronic
CAediting_319186chr3_158730157_-ncRNA_intronic
CAediting_319187chr3_158730192_-ncRNA_intronic
CAediting_319188chr3_158730198_-ncRNA_intronic
CAediting_319189chr3_158730208_-ncRNA_intronic
CAediting_319190chr3_158730220_-ncRNA_intronic
CAediting_319191chr3_158730237_-ncRNA_intronic
CAediting_319192chr3_158730314_-ncRNA_intronic
CAediting_319193chr3_158730483_-ncRNA_intronic
CAediting_319194chr3_158730526_-ncRNA_intronic
CAediting_319195chr3_158730547_-ncRNA_intronic
CAediting_319196chr3_158730549_-ncRNA_intronic
CAediting_319197chr3_158730558_-ncRNA_intronic
CAediting_319198chr3_158730566_-ncRNA_intronic
CAediting_319199chr3_158730647_-ncRNA_intronic
CAediting_319200chr3_158730813_-ncRNA_intronic
CAediting_319201chr3_158730895_-ncRNA_intronic
CAediting_319202chr3_158731078_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_319107chr3_158700089_-SINEAluAluJb
CAediting_319108chr3_158700091_-SINEAluAluJb
CAediting_319109chr3_158700104_-SINEAluAluJb
CAediting_319110chr3_158700117_-SINEAluAluJb
CAediting_319118chr3_158702149_-SINEAluAluSc8
CAediting_319119chr3_158704349_-SINEAluAluJr
CAediting_319120chr3_158705238_-LINEL2L2
CAediting_319121chr3_158705243_-LINEL2L2
CAediting_319122chr3_158705268_-LINEL2L2
CAediting_319123chr3_158705269_-LINEL2L2
CAediting_319124chr3_158705291_-LINEL2L2
CAediting_319125chr3_158705595_-SINEAluAluJo
CAediting_319130chr3_158706912_-SINEAluAluSx
CAediting_319131chr3_158706924_-SINEAluAluSx
CAediting_319132chr3_158706986_-SINEAluAluSx
CAediting_319133chr3_158707052_-SINEAluAluSx
CAediting_319134chr3_158710235_-SINEAluAluY
CAediting_319135chr3_158710313_-SINEAluAluY
CAediting_319136chr3_158711669_-SINEAluAluSg
CAediting_319137chr3_158711681_-SINEAluAluSg
CAediting_319138chr3_158711692_-SINEAluAluSg
CAediting_319139chr3_158711693_-SINEAluAluSg
CAediting_319140chr3_158712329_-SINEAluAluJb
CAediting_319141chr3_158712334_-SINEAluAluJb
CAediting_319142chr3_158718098_-SINEAluAluSc8
CAediting_319143chr3_158719383_-SINEAluAluSx1
CAediting_319144chr3_158719409_-SINEAluAluSx1
CAediting_319145chr3_158719445_-SINEAluAluSx1
CAediting_319146chr3_158719460_-SINEAluAluSx1
CAediting_319147chr3_158719468_-SINEAluAluSx1
CAediting_319148chr3_158719499_-SINEAluAluSx1
CAediting_319149chr3_158719552_-SINEAluAluSx1
CAediting_319150chr3_158719553_-SINEAluAluSx1
CAediting_319151chr3_158720437_-LTRERVL-MaLRMLT1C
CAediting_319152chr3_158720527_-LTRERVL-MaLRMLT1C
CAediting_319153chr3_158721818_-SINEAluAluSp
CAediting_319154chr3_158721834_-SINEAluAluSp
CAediting_319155chr3_158721943_-SINEAluAluSp
CAediting_319156chr3_158721991_-SINEAluAluSp
CAediting_319157chr3_158722008_-SINEAluAluSp
CAediting_319158chr3_158722022_-SINEAluAluSp
CAediting_319159chr3_158724650_-LTRERVL-MaLRMLT1D
CAediting_319160chr3_158724660_-LTRERVL-MaLRMLT1D
CAediting_319161chr3_158724966_-SINEAluAluJb
CAediting_319162chr3_158725097_-SINEAluAluJb
CAediting_319163chr3_158728620_-SINEAluAluSz
CAediting_319164chr3_158728621_-SINEAluAluSz
CAediting_319165chr3_158728626_-SINEAluAluSz
CAediting_319166chr3_158728661_-SINEAluAluSz
CAediting_319167chr3_158728664_-SINEAluAluSz
CAediting_319168chr3_158729486_-SINEAluAluSg7
CAediting_319169chr3_158729519_-SINEAluAluSg7
CAediting_319170chr3_158729536_-SINEAluAluSg7
CAediting_319171chr3_158729547_-SINEAluAluSg7
CAediting_319172chr3_158729548_-SINEAluAluSg7
CAediting_319173chr3_158729588_-SINEAluAluSg7
CAediting_319174chr3_158729594_-SINEAluAluSg7
CAediting_319175chr3_158729606_-SINEAluAluSg7
CAediting_319176chr3_158729653_-SINEAluAluSg7
CAediting_319177chr3_158729657_-SINEAluAluSg7
CAediting_319178chr3_158729658_-SINEAluAluSg7
CAediting_319179chr3_158729673_-SINEAluAluSg7
CAediting_319180chr3_158730063_-SINEAluAluSg
CAediting_319181chr3_158730065_-SINEAluAluSg
CAediting_319182chr3_158730077_-SINEAluAluSg
CAediting_319183chr3_158730078_-SINEAluAluSg
CAediting_319184chr3_158730140_-SINEAluAluSg
CAediting_319185chr3_158730154_-SINEAluAluSg
CAediting_319186chr3_158730157_-SINEAluAluSg
CAediting_319187chr3_158730192_-SINEAluAluSg
CAediting_319188chr3_158730198_-SINEAluAluSg
CAediting_319189chr3_158730208_-SINEAluAluSg
CAediting_319190chr3_158730220_-SINEAluAluSg
CAediting_319191chr3_158730237_-SINEAluAluSg
CAediting_319192chr3_158730314_-SINEAluAluSg
CAediting_319193chr3_158730483_-SINEAluAluJb
CAediting_319194chr3_158730526_-SINEAluAluJb
CAediting_319195chr3_158730547_-SINEAluAluJb
CAediting_319196chr3_158730549_-SINEAluAluJb
CAediting_319197chr3_158730558_-SINEAluAluJb
CAediting_319198chr3_158730566_-SINEAluAluJb
CAediting_319199chr3_158730647_-SINEAluAluJb
CAediting_319200chr3_158730813_-SINEAluAluSp
CAediting_319201chr3_158730895_-SINEAluAluSp
CAediting_319202chr3_158731078_-SINEAluAluSp

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RNA A-to-I editing events in the alternative splicing sites for RARRES1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000118849.8.RARRES1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000118849.8.RARRES1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RARRES1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
BLCA.CAediting_319100.ENSG00000118849.RARRES1.png
Soverview

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Protein coding region RNA A-to-I editings for RARRES1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for RARRES1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000118849.8ENST00000237696hsa-miR-200b-3p1586973731586973797mer-m8158697372158697395149-16.13

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RARRES1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for RARRES1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for RARRES1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for RARRES1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for RARRES1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
RARRES1P49788DB00755TretinoinRetinoic acid receptor responder protein 1 SmallMoleculeDrugapproved|investigational|nutraceutical

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RelatedDiseases for RARRES1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
RARRES1C0023893Liver Cirrhosis, Experimental1CTD_human
RARRES1C0024623Malignant neoplasm of stomach1CTD_human
RARRES1C0038356Stomach Neoplasms1CTD_human
RARRES1C1708349Hereditary Diffuse Gastric Cancer1CTD_human