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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: BCAT1 (CAeditome ID:586)

Gene summary for BCAT1

check button Gene summary
Gene informationGene symbol

BCAT1

Gene ID

586

Gene namebranched chain amino acid transaminase 1
SynonymsBCATC|BCT1|ECA39|MECA39|PNAS121|PP18
Cytomap

12p12.1

Type of geneprotein-coding
Descriptionbranched-chain-amino-acid aminotransferase, cytosolicbranched chain amino-acid transaminase 1, cytosolicbranched chain aminotransferase 1, cytosolicplacental protein 18
Modification date20210518
UniProtAcc

P54687

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for BCAT1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000060982.13
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_873902(24816887, -), CAediting_873903(24823154, -), CAediting_873904(24823155, -), CAediting_873905(24823340, -), CAediting_873906(24823347, -), CAediting_873907(24823355, -), CAediting_873908(24824437, -), CAediting_873909(24824458, -), CAediting_873910(24824459, -), CAediting_873911(24824462, -), CAediting_873912(24824496, -), CAediting_873913(24824499, -), CAediting_873914(24824508, -), CAediting_873915(24824519, -), CAediting_873916(24826046, -), CAediting_873917(24827557, -), CAediting_873918(24827600, -), CAediting_873919(24827626, -), CAediting_873920(24827951, -), CAediting_873921(24827960, -), CAediting_873922(24827998, -), CAediting_873923(24828003, -), CAediting_873924(24828024, -), CAediting_873925(24828025, -), CAediting_873926(24828027, -), CAediting_873927(24828031, -), CAediting_873928(24828041, -), CAediting_873929(24837551, -), CAediting_873930(24837555, -), CAediting_873931(24837669, -), CAediting_873932(24855505, -), CAediting_873933(24855518, -), CAediting_873934(24855550, -), CAediting_873935(24855551, -), CAediting_873936(24863871, -), CAediting_873937(24878038, -), CAediting_873938(24880190, -), CAediting_873939(24880232, -), CAediting_873940(24880261, -), CAediting_873941(24880286, -), CAediting_873942(24880332, -), CAediting_873943(24880374, -), CAediting_873944(24880375, -), CAediting_873945(24880397, -), CAediting_873946(24880878, -), CAediting_873947(24880935, -), CAediting_873948(24880936, -), CAediting_873949(24880999, -), CAediting_873950(24881066, -), CAediting_873951(24881110, -), CAediting_873952(24882675, -), CAediting_873953(24882737, -), CAediting_873954(24882796, -), CAediting_873955(24882797, -), CAediting_873956(24883095, -), CAediting_873957(24883107, -), CAediting_873958(24883174, -), CAediting_873959(24883177, -), CAediting_873960(24883226, -), CAediting_873961(24883549, -), CAediting_873962(24890351, -), CAediting_873963(24891881, -), CAediting_873964(24892029, -), CAediting_873965(24892151, -), CAediting_873966(24892197, -), CAediting_873967(24892670, -), CAediting_873968(24892796, -), CAediting_873969(24895337, -), CAediting_873970(24896086, -), CAediting_873971(24896667, -), CAediting_873972(24897668, -), CAediting_873973(24897678, -), CAediting_873974(24897692, -), CAediting_873975(24897727, -), CAediting_873976(24897736, -), CAediting_873977(24897757, -), CAediting_873978(24897833, -), CAediting_873979(24897840, -), CAediting_873980(24898653, -), CAediting_873981(24898654, -), CAediting_873982(24898669, -), CAediting_873983(24898676, -), CAediting_873984(24898680, -), CAediting_873985(24898689, -), CAediting_873986(24898691, -), CAediting_873987(24898692, -), CAediting_873988(24898693, -), CAediting_873989(24898695, -), CAediting_873990(24898734, -), CAediting_873991(24898743, -), CAediting_873992(24898789, -), CAediting_873993(24900743, -), CAediting_873994(24912258, -), CAediting_873995(24912396, -), CAediting_873996(24912620, -), CAediting_873997(24912622, -), CAediting_873998(24912630, -), CAediting_873999(24912647, -), CAediting_874000(24912662, -), CAediting_874001(24912668, -), CAediting_874002(24914233, -), CAediting_874003(24914355, -), CAediting_874004(24914356, -), CAediting_874005(24914369, -), CAediting_874006(24916072, -), CAediting_874007(24922708, -), CAediting_874008(24923480, -), CAediting_874009(24923531, -), CAediting_874010(24923535, -), CAediting_874011(24923545, -), CAediting_874012(24923571, -), CAediting_874013(24923665, -), CAediting_874014(24923682, -), CAediting_874015(24928540, -), CAediting_874016(24928593, -), CAediting_874017(24928856, -), CAediting_874018(24928873, -), CAediting_874019(24928874, -), CAediting_874020(24929034, -), CAediting_874021(24930999, -), CAediting_874022(24931014, -), CAediting_874023(24931041, -), CAediting_874024(24931083, -), CAediting_874025(24931136, -), CAediting_874026(24938897, -), CAediting_874027(24938953, -), CAediting_874028(24939012, -), CAediting_874029(24939147, -), CAediting_874030(24939689, -), CAediting_874031(24939715, -), CAediting_874032(24939777, -), CAediting_874033(24939828, -), CAediting_874034(24945616, -), CAediting_874035(24945650, -), CAediting_874036(24945666, -), CAediting_874037(24945667, -), CAediting_874038(24945737, -), CAediting_874039(24945741, -), CAediting_874040(24945762, -), CAediting_874041(24945771, -), CAediting_874042(24945781, -), CAediting_874043(24945783, -), CAediting_874044(24945810, -),

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RNA editing positional annotations for BCAT1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_873902chr12_24816887_-UTR3
CAediting_873903chr12_24823154_-ncRNA_intronic
CAediting_873904chr12_24823155_-ncRNA_intronic
CAediting_873905chr12_24823340_-ncRNA_intronic
CAediting_873906chr12_24823347_-ncRNA_intronic
CAediting_873907chr12_24823355_-ncRNA_intronic
CAediting_873908chr12_24824437_-ncRNA_intronic
CAediting_873909chr12_24824458_-ncRNA_intronic
CAediting_873910chr12_24824459_-ncRNA_intronic
CAediting_873911chr12_24824462_-ncRNA_intronic
CAediting_873912chr12_24824496_-ncRNA_intronic
CAediting_873913chr12_24824499_-ncRNA_intronic
CAediting_873914chr12_24824508_-ncRNA_intronic
CAediting_873915chr12_24824519_-ncRNA_intronic
CAediting_873916chr12_24826046_-ncRNA_intronic
CAediting_873917chr12_24827557_-ncRNA_intronic
CAediting_873918chr12_24827600_-ncRNA_intronic
CAediting_873919chr12_24827626_-ncRNA_intronic
CAediting_873920chr12_24827951_-ncRNA_intronic
CAediting_873921chr12_24827960_-ncRNA_intronic
CAediting_873922chr12_24827998_-ncRNA_intronic
CAediting_873923chr12_24828003_-ncRNA_intronic
CAediting_873924chr12_24828024_-ncRNA_intronic
CAediting_873925chr12_24828025_-ncRNA_intronic
CAediting_873926chr12_24828027_-ncRNA_intronic
CAediting_873927chr12_24828031_-ncRNA_intronic
CAediting_873928chr12_24828041_-ncRNA_intronic
CAediting_873929chr12_24837551_-ncRNA_intronic
CAediting_873930chr12_24837555_-ncRNA_intronic
CAediting_873931chr12_24837669_-ncRNA_intronic
CAediting_873932chr12_24855505_-ncRNA_intronic
CAediting_873933chr12_24855518_-ncRNA_intronic
CAediting_873934chr12_24855550_-ncRNA_intronic
CAediting_873935chr12_24855551_-ncRNA_intronic
CAediting_873936chr12_24863871_-ncRNA_intronic
CAediting_873937chr12_24878038_-ncRNA_intronic
CAediting_873938chr12_24880190_-ncRNA_intronic
CAediting_873939chr12_24880232_-ncRNA_intronic
CAediting_873940chr12_24880261_-ncRNA_intronic
CAediting_873941chr12_24880286_-ncRNA_intronic
CAediting_873942chr12_24880332_-ncRNA_intronic
CAediting_873943chr12_24880374_-ncRNA_intronic
CAediting_873944chr12_24880375_-ncRNA_intronic
CAediting_873945chr12_24880397_-ncRNA_intronic
CAediting_873946chr12_24880878_-ncRNA_intronic
CAediting_873947chr12_24880935_-ncRNA_intronic
CAediting_873948chr12_24880936_-ncRNA_intronic
CAediting_873949chr12_24880999_-ncRNA_intronic
CAediting_873950chr12_24881066_-ncRNA_intronic
CAediting_873951chr12_24881110_-ncRNA_intronic
CAediting_873952chr12_24882675_-ncRNA_intronic
CAediting_873953chr12_24882737_-ncRNA_intronic
CAediting_873954chr12_24882796_-ncRNA_intronic
CAediting_873955chr12_24882797_-ncRNA_intronic
CAediting_873956chr12_24883095_-ncRNA_intronic
CAediting_873957chr12_24883107_-ncRNA_intronic
CAediting_873958chr12_24883174_-ncRNA_intronic
CAediting_873959chr12_24883177_-ncRNA_intronic
CAediting_873960chr12_24883226_-ncRNA_intronic
CAediting_873961chr12_24883549_-ncRNA_intronic
CAediting_873962chr12_24890351_-ncRNA_intronic
CAediting_873963chr12_24891881_-ncRNA_intronic
CAediting_873964chr12_24892029_-ncRNA_intronic
CAediting_873965chr12_24892151_-ncRNA_intronic
CAediting_873966chr12_24892197_-ncRNA_intronic
CAediting_873967chr12_24892670_-ncRNA_intronic
CAediting_873968chr12_24892796_-ncRNA_intronic
CAediting_873969chr12_24895337_-ncRNA_intronic
CAediting_873970chr12_24896086_-ncRNA_intronic
CAediting_873971chr12_24896667_-ncRNA_intronic
CAediting_873972chr12_24897668_-ncRNA_intronic
CAediting_873973chr12_24897678_-ncRNA_intronic
CAediting_873974chr12_24897692_-ncRNA_intronic
CAediting_873975chr12_24897727_-ncRNA_intronic
CAediting_873976chr12_24897736_-ncRNA_intronic
CAediting_873977chr12_24897757_-ncRNA_intronic
CAediting_873978chr12_24897833_-ncRNA_intronic
CAediting_873979chr12_24897840_-ncRNA_intronic
CAediting_873980chr12_24898653_-ncRNA_intronic
CAediting_873981chr12_24898654_-ncRNA_intronic
CAediting_873982chr12_24898669_-ncRNA_intronic
CAediting_873983chr12_24898676_-ncRNA_intronic
CAediting_873984chr12_24898680_-ncRNA_intronic
CAediting_873985chr12_24898689_-ncRNA_intronic
CAediting_873986chr12_24898691_-ncRNA_intronic
CAediting_873987chr12_24898692_-ncRNA_intronic
CAediting_873988chr12_24898693_-ncRNA_intronic
CAediting_873989chr12_24898695_-ncRNA_intronic
CAediting_873990chr12_24898734_-ncRNA_intronic
CAediting_873991chr12_24898743_-ncRNA_intronic
CAediting_873992chr12_24898789_-ncRNA_intronic
CAediting_873993chr12_24900743_-ncRNA_intronic
CAediting_873994chr12_24912258_-intronic
CAediting_873995chr12_24912396_-intronic
CAediting_873996chr12_24912620_-intronic
CAediting_873997chr12_24912622_-intronic
CAediting_873998chr12_24912630_-intronic
CAediting_873999chr12_24912647_-intronic
CAediting_874000chr12_24912662_-intronic
CAediting_874001chr12_24912668_-intronic
CAediting_874002chr12_24914233_-intronic
CAediting_874003chr12_24914355_-intronic
CAediting_874004chr12_24914356_-intronic
CAediting_874005chr12_24914369_-intronic
CAediting_874006chr12_24916072_-intronic
CAediting_874007chr12_24922708_-intronic
CAediting_874008chr12_24923480_-intronic
CAediting_874009chr12_24923531_-intronic
CAediting_874010chr12_24923535_-intronic
CAediting_874011chr12_24923545_-intronic
CAediting_874012chr12_24923571_-intronic
CAediting_874013chr12_24923665_-intronic
CAediting_874014chr12_24923682_-intronic
CAediting_874015chr12_24928540_-intronic
CAediting_874016chr12_24928593_-intronic
CAediting_874017chr12_24928856_-intronic
CAediting_874018chr12_24928873_-intronic
CAediting_874019chr12_24928874_-intronic
CAediting_874020chr12_24929034_-intronic
CAediting_874021chr12_24930999_-intronic
CAediting_874022chr12_24931014_-intronic
CAediting_874023chr12_24931041_-intronic
CAediting_874024chr12_24931083_-intronic
CAediting_874025chr12_24931136_-intronic
CAediting_874026chr12_24938897_-intronic
CAediting_874027chr12_24938953_-intronic
CAediting_874028chr12_24939012_-intronic
CAediting_874029chr12_24939147_-intronic
CAediting_874030chr12_24939689_-intronic
CAediting_874031chr12_24939715_-intronic
CAediting_874032chr12_24939777_-intronic
CAediting_874033chr12_24939828_-intronic
CAediting_874034chr12_24945616_-ncRNA_exonic
CAediting_874035chr12_24945650_-ncRNA_exonic
CAediting_874036chr12_24945666_-ncRNA_exonic
CAediting_874037chr12_24945667_-ncRNA_exonic
CAediting_874038chr12_24945737_-ncRNA_exonic
CAediting_874039chr12_24945741_-ncRNA_exonic
CAediting_874040chr12_24945762_-ncRNA_exonic
CAediting_874041chr12_24945771_-ncRNA_exonic
CAediting_874042chr12_24945781_-ncRNA_exonic
CAediting_874043chr12_24945783_-ncRNA_exonic
CAediting_874044chr12_24945810_-ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_873902chr12_24816887_-DNAhAT-CharlieMER1B
CAediting_873903chr12_24823154_-SINEAluAluJb
CAediting_873904chr12_24823155_-SINEAluAluJb
CAediting_873905chr12_24823340_-SINEAluAluJb
CAediting_873906chr12_24823347_-SINEAluAluJb
CAediting_873907chr12_24823355_-SINEAluAluJb
CAediting_873908chr12_24824437_-SINEAluAluJr
CAediting_873909chr12_24824458_-SINEAluAluJr
CAediting_873910chr12_24824459_-SINEAluAluJr
CAediting_873911chr12_24824462_-SINEAluAluJr
CAediting_873912chr12_24824496_-SINEAluAluJr
CAediting_873913chr12_24824499_-SINEAluAluJr
CAediting_873914chr12_24824508_-SINEAluAluJr
CAediting_873915chr12_24824519_-SINEAluAluJr
CAediting_873916chr12_24826046_-SINEAluAluJb
CAediting_873917chr12_24827557_-SINEAluAluSz6
CAediting_873918chr12_24827600_-SINEAluAluSz6
CAediting_873919chr12_24827626_-SINEAluAluSz6
CAediting_873920chr12_24827951_-SINEAluAluJr
CAediting_873921chr12_24827960_-SINEAluAluJr
CAediting_873922chr12_24827998_-SINEAluAluJr
CAediting_873923chr12_24828003_-SINEAluAluJr
CAediting_873924chr12_24828024_-SINEAluAluJr
CAediting_873925chr12_24828025_-SINEAluAluJr
CAediting_873926chr12_24828027_-SINEAluAluJr
CAediting_873927chr12_24828031_-SINEAluAluJr
CAediting_873928chr12_24828041_-SINEAluAluJr
CAediting_873929chr12_24837551_-SINEAluAluSx
CAediting_873930chr12_24837555_-SINEAluAluSx
CAediting_873931chr12_24837669_-SINEAluAluSx
CAediting_873932chr12_24855505_-SINEAluAluSz
CAediting_873933chr12_24855518_-SINEAluAluSz
CAediting_873934chr12_24855550_-SINEAluAluSz
CAediting_873935chr12_24855551_-SINEAluAluSz
CAediting_873936chr12_24863871_-SINEAluAluJr
CAediting_873937chr12_24878038_-SINEAluAluJr4
CAediting_873938chr12_24880190_-SINEAluAluSz6
CAediting_873939chr12_24880232_-SINEAluAluSz6
CAediting_873940chr12_24880261_-SINEAluAluSz6
CAediting_873941chr12_24880286_-SINEAluAluSz6
CAediting_873942chr12_24880332_-SINEAluAluSz6
CAediting_873943chr12_24880374_-SINEAluAluSz6
CAediting_873944chr12_24880375_-SINEAluAluSz6
CAediting_873945chr12_24880397_-SINEAluAluSz6
CAediting_873946chr12_24880878_-SINEAluAluSz6
CAediting_873947chr12_24880935_-SINEAluAluSz6
CAediting_873948chr12_24880936_-SINEAluAluSz6
CAediting_873949chr12_24880999_-SINEAluAluSz6
CAediting_873950chr12_24881066_-SINEAluAluSz6
CAediting_873951chr12_24881110_-SINEAluAluSz6
CAediting_873952chr12_24882675_-SINEAluAluJb
CAediting_873953chr12_24882737_-SINEAluAluJb
CAediting_873954chr12_24882796_-SINEAluAluJb
CAediting_873955chr12_24882797_-SINEAluAluJb
CAediting_873956chr12_24883095_-SINEAluAluSz
CAediting_873957chr12_24883107_-SINEAluAluSz
CAediting_873958chr12_24883174_-SINEAluAluSz
CAediting_873959chr12_24883177_-SINEAluAluSz
CAediting_873960chr12_24883226_-SINEAluAluSz
CAediting_873961chr12_24883549_-SINEAluAluJo
CAediting_873962chr12_24890351_-LTRERV1MER41B
CAediting_873963chr12_24891881_-SINEAluAluY
CAediting_873964chr12_24892029_-SINEAluAluY
CAediting_873965chr12_24892151_-LTRERV1MER41B
CAediting_873966chr12_24892197_-LTRERV1MER41B
CAediting_873967chr12_24892670_-SINEAluAluJo
CAediting_873968chr12_24892796_-SINEAluAluJo
CAediting_873969chr12_24895337_-SINEAluAluSc8
CAediting_873970chr12_24896086_-SINEAluAluJo
CAediting_873971chr12_24896667_-SINEAluAluSq
CAediting_873972chr12_24897668_-SINEAluAluSx
CAediting_873973chr12_24897678_-SINEAluAluSx
CAediting_873974chr12_24897692_-SINEAluAluSx
CAediting_873975chr12_24897727_-SINEAluAluSx
CAediting_873976chr12_24897736_-SINEAluAluSx
CAediting_873977chr12_24897757_-SINEAluAluSx
CAediting_873978chr12_24897833_-SINEAluAluSx
CAediting_873979chr12_24897840_-SINEAluAluSx
CAediting_873980chr12_24898653_-SINEAluAluSz
CAediting_873981chr12_24898654_-SINEAluAluSz
CAediting_873982chr12_24898669_-SINEAluAluSz
CAediting_873983chr12_24898676_-SINEAluAluSz
CAediting_873984chr12_24898680_-SINEAluAluSz
CAediting_873985chr12_24898689_-SINEAluAluSz
CAediting_873986chr12_24898691_-SINEAluAluSz
CAediting_873987chr12_24898692_-SINEAluAluSz
CAediting_873988chr12_24898693_-SINEAluAluSz
CAediting_873989chr12_24898695_-SINEAluAluSz
CAediting_873990chr12_24898734_-SINEAluAluSz
CAediting_873991chr12_24898743_-SINEAluAluSz
CAediting_873992chr12_24898789_-SINEAluAluSz
CAediting_873993chr12_24900743_-SINEAluAluSx
CAediting_873994chr12_24912258_-SINEAluAluY
CAediting_873995chr12_24912396_-SINEAluAluY
CAediting_873996chr12_24912620_-SINEAluFLAM_C
CAediting_873997chr12_24912622_-SINEAluFLAM_C
CAediting_873998chr12_24912630_-SINEAluFLAM_C
CAediting_873999chr12_24912647_-SINEAluFLAM_C
CAediting_874000chr12_24912662_-SINEAluFLAM_C
CAediting_874001chr12_24912668_-SINEAluFLAM_C
CAediting_874002chr12_24914233_-SINEAluAluSz
CAediting_874003chr12_24914355_-SINEAluAluSz
CAediting_874004chr12_24914356_-SINEAluAluSz
CAediting_874005chr12_24914369_-SINEAluAluSz
CAediting_874006chr12_24916072_-SINEAluAluSx
CAediting_874007chr12_24922708_-SINEAluAluSc
CAediting_874008chr12_24923480_-SINEAluAluJb
CAediting_874009chr12_24923531_-SINEAluAluJb
CAediting_874010chr12_24923535_-SINEAluAluJb
CAediting_874011chr12_24923545_-SINEAluAluJb
CAediting_874012chr12_24923571_-SINEAluAluJb
CAediting_874013chr12_24923665_-SINEAluAluJb
CAediting_874014chr12_24923682_-SINEAluAluJb
CAediting_874015chr12_24928540_-SINEAluAluJr
CAediting_874016chr12_24928593_-SINEAluAluJr
CAediting_874017chr12_24928856_-SINEAluAluSp
CAediting_874018chr12_24928873_-SINEAluAluSp
CAediting_874019chr12_24928874_-SINEAluAluSp
CAediting_874020chr12_24929034_-SINEAluAluSp
CAediting_874021chr12_24930999_-SINEAluAluSx1
CAediting_874022chr12_24931014_-SINEAluAluSx1
CAediting_874023chr12_24931041_-SINEAluAluSx1
CAediting_874024chr12_24931083_-SINEAluAluSx1
CAediting_874025chr12_24931136_-SINEAluAluSx1
CAediting_874026chr12_24938897_-SINEAluAluSz
CAediting_874027chr12_24938953_-SINEAluAluSz
CAediting_874028chr12_24939012_-SINEAluAluSz
CAediting_874029chr12_24939147_-SINEAluAluSz
CAediting_874030chr12_24939689_-SINEAluAluSx1
CAediting_874031chr12_24939715_-SINEAluAluSx1
CAediting_874032chr12_24939777_-SINEAluAluSx1
CAediting_874033chr12_24939828_-SINEAluAluSx1
CAediting_874034chr12_24945616_-SINEAluAluSz6
CAediting_874035chr12_24945650_-SINEAluAluSz6
CAediting_874036chr12_24945666_-SINEAluAluSz6
CAediting_874037chr12_24945667_-SINEAluAluSz6
CAediting_874038chr12_24945737_-SINEAluAluSz6
CAediting_874039chr12_24945741_-SINEAluAluSz6
CAediting_874040chr12_24945762_-SINEAluAluSz6
CAediting_874041chr12_24945771_-SINEAluAluSz6
CAediting_874042chr12_24945781_-SINEAluAluSz6
CAediting_874043chr12_24945783_-SINEAluAluSz6
CAediting_874044chr12_24945810_-SINEAluAluSz6

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RNA A-to-I editing events in the alternative splicing sites for BCAT1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000060982.13.BCAT1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000060982.13.BCAT1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BCAT1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for BCAT1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for BCAT1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_873902chr12_24816887_-ENSG00000060982.13ENST00000538118hsa-miR-155-5p24816887248168937mer-m82481688624816914148-21.4
CAediting_873902chr12_24816887_-ENSG00000060982.13ENST00000342945hsa-miR-155-5p24816887248168937mer-m82481688624816914148-21.4

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000060982.13ENST00000538118hsa-miR-200b-3p24816887248168948mer-1a2481688724816909151-20.42
CAediting_688080chr9_63819626_+ENSG00000060982.13ENST00000538118hsa-miR-4477b24817738248177447mer-m82481773724817763146-14.03
CAediting_688080chr9_63819626_+ENSG00000060982.13ENST00000538118hsa-miR-4477b24817654248176618mer-1a2481765424817677153-16.74
CAediting_393chr1_1167164_+ENSG00000060982.13ENST00000342945hsa-miR-200b-3p24816887248168948mer-1a2481688724816909151-20.42
CAediting_688080chr9_63819626_+ENSG00000060982.13ENST00000342945hsa-miR-4477b24817738248177447mer-m82481773724817763146-14.03
CAediting_688080chr9_63819626_+ENSG00000060982.13ENST00000342945hsa-miR-4477b24817654248176618mer-1a2481765424817677153-16.74
CAediting_688080chr9_63819626_+ENSG00000060982.13ENST00000539282hsa-miR-4477b24817738248177447mer-m82481773724817763146-14.03
CAediting_688080chr9_63819626_+ENSG00000060982.13ENST00000539282hsa-miR-4477b24817654248176618mer-1a2481765424817677153-16.74
CAediting_1229413chr17_67471544_+ENSG00000060982.13ENST00000538118hsa-miR-548aa24816347248163537mer-m82481634624816372158-11.79
CAediting_86358chr1_109598906_+ENSG00000060982.13ENST00000538118hsa-miR-197-5p24816764248167696mer2481675624816779140-22.31
CAediting_396018chr5_1062918_-ENSG00000060982.13ENST00000538118hsa-miR-463524815745248157528mer-1a2481574524815765145-14.54
CAediting_442554chr5_154685830_+ENSG00000060982.13ENST00000538118hsa-miR-130324815823248158308mer-1a2481582324815846147-15.89
CAediting_1229413chr17_67471544_+ENSG00000060982.13ENST00000342945hsa-miR-548aa24816347248163537mer-m82481634624816372158-11.79
CAediting_86358chr1_109598906_+ENSG00000060982.13ENST00000342945hsa-miR-197-5p24816764248167696mer2481675624816779140-22.31
CAediting_396018chr5_1062918_-ENSG00000060982.13ENST00000342945hsa-miR-463524815745248157528mer-1a2481574524815765145-14.54
CAediting_442554chr5_154685830_+ENSG00000060982.13ENST00000342945hsa-miR-130324815823248158308mer-1a2481582324815846147-15.89

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000060982.13ENST00000538118hsa-miR-195-3p24815381248153877mer-m82481538024815400154-9.78
CAediting_396018chr5_1062918_-ENSG00000060982.13ENST00000538118hsa-miR-463524815483248154908mer-1a2481548324815503140-10.72
CAediting_1229413chr17_67471544_+ENSG00000060982.13ENST00000538118hsa-miR-548aa24817274248172818mer-1a2481727424817296149-13.35
CAediting_1229414chr17_67471546_+ENSG00000060982.13ENST00000538118hsa-miR-548aa24817274248172818mer-1a2481727424817296149-13.35
CAediting_1229415chr17_67471547_+ENSG00000060982.13ENST00000538118hsa-miR-548aa24817274248172818mer-1a2481727424817296149-13.35
CAediting_228905chr2_188297554_+ENSG00000060982.13ENST00000538118hsa-miR-561-3p24816190248161967mer-m82481618924816213147-6.71
CAediting_468389chr6_31355314_-ENSG00000060982.13ENST00000538118hsa-miR-6891-5p24817720248177267mer-m82481771924817737140-14.88
CAediting_1160181chr17_7017644_-ENSG00000060982.13ENST00000342945hsa-miR-195-3p24815381248153877mer-m82481538024815400154-9.78
CAediting_396018chr5_1062918_-ENSG00000060982.13ENST00000342945hsa-miR-463524815483248154908mer-1a2481548324815503140-10.72
CAediting_1229413chr17_67471544_+ENSG00000060982.13ENST00000342945hsa-miR-548aa24817274248172818mer-1a2481727424817296149-13.35
CAediting_1229414chr17_67471546_+ENSG00000060982.13ENST00000342945hsa-miR-548aa24817274248172818mer-1a2481727424817296149-13.35
CAediting_1229415chr17_67471547_+ENSG00000060982.13ENST00000342945hsa-miR-548aa24817274248172818mer-1a2481727424817296149-13.35
CAediting_228905chr2_188297554_+ENSG00000060982.13ENST00000342945hsa-miR-561-3p24816190248161967mer-m82481618924816213147-6.71
CAediting_468389chr6_31355314_-ENSG00000060982.13ENST00000342945hsa-miR-6891-5p24817720248177267mer-m82481771924817737140-14.88
CAediting_468389chr6_31355314_-ENSG00000060982.13ENST00000539282hsa-miR-6891-5p24817720248177267mer-m82481771924817737140-14.88

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for BCAT1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for BCAT1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_873902chr12_24816887_-0.0001731122867844480.379845755204973....
LGGCAediting_873902chr12_24816887_-0.001602134178208590.415609440212527....
BRCACAediting_873902chr12_24816887_-0.001638355204767190.226960745599257....
LUADCAediting_873902chr12_24816887_-2.37982876955056e-190.526215808439382....
LUSCCAediting_873902chr12_24816887_-5.47171724587344e-050.324274105324775..0.009931792547065530.210613077995629
GBMCAediting_873902chr12_24816887_-1.46676680917642e-070.601528737471538....
HNSCCAediting_873902chr12_24816887_-..0.007360189565769930.256546018323522..
KIRCCAediting_873902chr12_24816887_-0.03563907580306140.226915079107679....
UCECCAediting_873902chr12_24816887_-2.07706842914479e-090.442780715892027....
OVCAediting_873902chr12_24816887_-3.92901143174221e-110.395569553923368....
MESOCAediting_873902chr12_24816887_-5.43142885012296e-050.529493126093976....
SARCCAediting_873902chr12_24816887_-6.21960670755432e-060.483975036970379....

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Relation with cancer stages for BCAT1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for BCAT1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for BCAT1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
BCAT1P54687DB00114Pyridoxal phosphateBranched-chain-amino-acid aminotransferase, cytosolic SmallMoleculeDrugapproved|investigational|nutraceutical
BCAT1P54687DB00142Glutamic acidBranched-chain-amino-acid aminotransferase, cytosolic SmallMoleculeDrugapproved|nutraceutical
BCAT1P54687DB00161ValineBranched-chain-amino-acid aminotransferase, cytosolic SmallMoleculeDrugapproved|nutraceutical

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RelatedDiseases for BCAT1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
BCAT1C0008370Cholestasis1CTD_human
BCAT1C0043094Weight Gain1CTD_human