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Editing gene: LY6G5B (CAeditome ID:58496)

Gene summary for LY6G5B

Gene summary

Gene information	Gene symbol	LY6G5B
	Gene ID	58496
	Gene name	lymphocyte antigen 6 family member G5B
	Synonyms	C6orf19\|G5b
	Cytomap	6p21.33
	Type of gene	protein-coding
	Description	lymphocyte antigen 6 complex locus protein G5blymphocyte antigen 6 complex, locus G5B
	Modification date	20210518
	UniProtAcc	Q8NDX9
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
LY6G5B	GO:0009897	Lymphocyte antigen 6 complex locus protein G5b	17008713
LY6G5B	GO:0042802	Lymphocyte antigen 6 complex locus protein G5b	17008713
LY6G5B	GO:0032991	Lymphocyte antigen 6 complex locus protein G5b	17008713

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RNA A-to-I events for LY6G5B

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000240053.8

RNA A-to-I editing events in Cancer.

CAediting_468502(31671494, +), CAediting_468503(31671547, +), CAediting_468504(31672468, +), CAediting_468505(31672469, +), CAediting_468506(31672470, +), CAediting_468507(31672488, +), CAediting_468508(31672500, +), CAediting_468509(31672519, +), CAediting_468510(31672545, +), CAediting_468511(31672549, +), CAediting_468512(31672562, +), CAediting_468513(31672586, +), CAediting_468514(31672600, +), CAediting_468515(31672611, +), CAediting_468516(31672626, +), CAediting_468517(31672646, +), CAediting_468518(31672655, +), CAediting_468519(31672704, +), CAediting_468520(31672705, +), CAediting_468521(31672706, +), CAediting_468522(31672718, +), CAediting_468523(31672727, +), CAediting_468524(31673002, +), CAediting_468525(31673019, +), CAediting_468526(31673046, +), CAediting_468527(31673051, +), CAediting_468528(31673059, +), CAediting_468529(31673065, +), CAediting_468530(31673067, +), CAediting_468531(31673080, +), CAediting_468532(31673082, +), CAediting_468533(31673089, +), CAediting_468534(31673090, +), CAediting_468535(31673105, +), CAediting_468536(31673106, +), CAediting_468537(31673107, +), CAediting_468538(31673108, +), CAediting_468539(31673114, +), CAediting_468540(31673115, +), CAediting_468541(31673116, +), CAediting_468542(31673137, +), CAediting_468543(31673145, +), CAediting_468544(31673162, +), CAediting_468545(31673170, +), CAediting_468546(31673178, +), CAediting_468547(31673186, +), CAediting_468548(31673216, +), CAediting_468549(31673218, +), CAediting_468550(31673226, +), CAediting_468551(31673231, +), CAediting_468552(31673274, +),

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RNA editing positional annotations for LY6G5B using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_468502	chr6_31671494_+	intronic
CAediting_468503	chr6_31671547_+	intronic
CAediting_468504	chr6_31672468_+	ncRNA_intronic
CAediting_468505	chr6_31672469_+	ncRNA_intronic
CAediting_468506	chr6_31672470_+	ncRNA_intronic
CAediting_468507	chr6_31672488_+	ncRNA_intronic
CAediting_468508	chr6_31672500_+	ncRNA_intronic
CAediting_468509	chr6_31672519_+	ncRNA_intronic
CAediting_468510	chr6_31672545_+	ncRNA_intronic
CAediting_468511	chr6_31672549_+	ncRNA_intronic
CAediting_468512	chr6_31672562_+	ncRNA_intronic
CAediting_468513	chr6_31672586_+	ncRNA_intronic
CAediting_468514	chr6_31672600_+	ncRNA_intronic
CAediting_468515	chr6_31672611_+	ncRNA_intronic
CAediting_468516	chr6_31672626_+	ncRNA_intronic
CAediting_468517	chr6_31672646_+	ncRNA_intronic
CAediting_468518	chr6_31672655_+	ncRNA_intronic
CAediting_468519	chr6_31672704_+	ncRNA_intronic
CAediting_468520	chr6_31672705_+	ncRNA_intronic
CAediting_468521	chr6_31672706_+	ncRNA_intronic
CAediting_468522	chr6_31672718_+	ncRNA_intronic
CAediting_468523	chr6_31672727_+	ncRNA_intronic
CAediting_468524	chr6_31673002_+	ncRNA_intronic
CAediting_468525	chr6_31673019_+	ncRNA_intronic
CAediting_468526	chr6_31673046_+	ncRNA_intronic
CAediting_468527	chr6_31673051_+	ncRNA_intronic
CAediting_468528	chr6_31673059_+	ncRNA_intronic
CAediting_468529	chr6_31673065_+	ncRNA_intronic
CAediting_468530	chr6_31673067_+	ncRNA_intronic
CAediting_468531	chr6_31673080_+	ncRNA_intronic
CAediting_468532	chr6_31673082_+	ncRNA_intronic
CAediting_468533	chr6_31673089_+	ncRNA_intronic
CAediting_468534	chr6_31673090_+	ncRNA_intronic
CAediting_468535	chr6_31673105_+	ncRNA_intronic
CAediting_468536	chr6_31673106_+	ncRNA_intronic
CAediting_468537	chr6_31673107_+	ncRNA_intronic
CAediting_468538	chr6_31673108_+	ncRNA_intronic
CAediting_468539	chr6_31673114_+	ncRNA_intronic
CAediting_468540	chr6_31673115_+	ncRNA_intronic
CAediting_468541	chr6_31673116_+	ncRNA_intronic
CAediting_468542	chr6_31673137_+	ncRNA_intronic
CAediting_468543	chr6_31673145_+	ncRNA_intronic
CAediting_468544	chr6_31673162_+	ncRNA_exonic
CAediting_468545	chr6_31673170_+	ncRNA_exonic
CAediting_468546	chr6_31673178_+	ncRNA_exonic
CAediting_468547	chr6_31673186_+	ncRNA_exonic
CAediting_468548	chr6_31673216_+	ncRNA_exonic
CAediting_468549	chr6_31673218_+	ncRNA_exonic
CAediting_468550	chr6_31673226_+	ncRNA_exonic
CAediting_468551	chr6_31673231_+	ncRNA_exonic
CAediting_468552	chr6_31673274_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_468502	chr6_31671494_+	SINE	Alu	AluJb
CAediting_468503	chr6_31671547_+	SINE	Alu	AluJb
CAediting_468504	chr6_31672468_+	SINE	Alu	AluSx3
CAediting_468505	chr6_31672469_+	SINE	Alu	AluSx3
CAediting_468506	chr6_31672470_+	SINE	Alu	AluSx3
CAediting_468507	chr6_31672488_+	SINE	Alu	AluSx3
CAediting_468508	chr6_31672500_+	SINE	Alu	AluSx3
CAediting_468509	chr6_31672519_+	SINE	Alu	AluSx3
CAediting_468510	chr6_31672545_+	SINE	Alu	AluSx3
CAediting_468511	chr6_31672549_+	SINE	Alu	AluSx3
CAediting_468512	chr6_31672562_+	SINE	Alu	AluSx3
CAediting_468513	chr6_31672586_+	SINE	Alu	AluSx3
CAediting_468514	chr6_31672600_+	SINE	Alu	AluSx3
CAediting_468515	chr6_31672611_+	SINE	Alu	AluSx3
CAediting_468516	chr6_31672626_+	SINE	Alu	AluSx3
CAediting_468517	chr6_31672646_+	SINE	Alu	AluSx3
CAediting_468518	chr6_31672655_+	SINE	Alu	AluSx3
CAediting_468519	chr6_31672704_+	SINE	Alu	AluSx3
CAediting_468520	chr6_31672705_+	SINE	Alu	AluSx3
CAediting_468521	chr6_31672706_+	SINE	Alu	AluSx3
CAediting_468522	chr6_31672718_+	SINE	Alu	AluSx3
CAediting_468523	chr6_31672727_+	SINE	Alu	AluSx3
CAediting_468524	chr6_31673002_+	SINE	Alu	AluSz
CAediting_468525	chr6_31673019_+	SINE	Alu	AluSz
CAediting_468526	chr6_31673046_+	SINE	Alu	AluSz
CAediting_468527	chr6_31673051_+	SINE	Alu	AluSz
CAediting_468528	chr6_31673059_+	SINE	Alu	AluSz
CAediting_468529	chr6_31673065_+	SINE	Alu	AluSz
CAediting_468530	chr6_31673067_+	SINE	Alu	AluSz
CAediting_468531	chr6_31673080_+	SINE	Alu	AluSz
CAediting_468532	chr6_31673082_+	SINE	Alu	AluSz
CAediting_468533	chr6_31673089_+	SINE	Alu	AluSz
CAediting_468534	chr6_31673090_+	SINE	Alu	AluSz
CAediting_468535	chr6_31673105_+	SINE	Alu	AluSz
CAediting_468536	chr6_31673106_+	SINE	Alu	AluSz
CAediting_468537	chr6_31673107_+	SINE	Alu	AluSz
CAediting_468538	chr6_31673108_+	SINE	Alu	AluSz
CAediting_468539	chr6_31673114_+	SINE	Alu	AluSz
CAediting_468540	chr6_31673115_+	SINE	Alu	AluSz
CAediting_468541	chr6_31673116_+	SINE	Alu	AluSz
CAediting_468542	chr6_31673137_+	SINE	Alu	AluSz
CAediting_468543	chr6_31673145_+	SINE	Alu	AluSz
CAediting_468544	chr6_31673162_+	SINE	Alu	AluSz
CAediting_468545	chr6_31673170_+	SINE	Alu	AluSz
CAediting_468546	chr6_31673178_+	SINE	Alu	AluSz
CAediting_468547	chr6_31673186_+	SINE	Alu	AluSz
CAediting_468548	chr6_31673216_+	SINE	Alu	AluSz
CAediting_468549	chr6_31673218_+	SINE	Alu	AluSz
CAediting_468550	chr6_31673226_+	SINE	Alu	AluSz
CAediting_468551	chr6_31673231_+	SINE	Alu	AluSz
CAediting_468552	chr6_31673274_+	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for LY6G5B

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
IR	CAediting_468543	chr6_31673145_+	31673140:31673162	3SS	0+15i	TCTGTAATCCCAGCTACTCAGGA	-18.96	TCTGTGATCCCAGCTACTCAGGA	-17.59
IR	CAediting_468544	chr6_31673162_+	31673140:31673162	3SS	3+0i	TCTGTAATCCCAGCTACTCAGGA	-18.96	TCTGTAATCCCAGCTACTCAGGG	-19.03

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000240053.8.LY6G5B.

Correlation between RNA A-to-I editing and PSI for ENSG00000240053.8.LY6G5B.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LY6G5B

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

SKCM.CAediting_468543.ENSG00000240053.LY6G5B.png
Soverview

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Protein coding region RNA A-to-I editings for LY6G5B

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LY6G5B

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_468505	chr6_31672469_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3664-5p	31672465	31672471	7mer-m8	31672450	31672472	155.00	-15.94
CAediting_468505	chr6_31672469_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4522	31672466	31672472	7mer-m8	31672454	31672473	151.00	-15.25
CAediting_468505	chr6_31672469_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6888-3p	31672463	31672469	7mer-m8	31672450	31672470	151.00	-14.90
CAediting_468506	chr6_31672470_+	ENSG00000240053.8	ENST00000375864	hsa-miR-769-5p	31672468	31672474	7mer-m8	31672456	31672475	143.00	-19.30
CAediting_468511	chr6_31672549_+	ENSG00000240053.8	ENST00000375864	hsa-miR-589-5p	31672547	31672553	7mer-m8	31672533	31672554	144.00	-15.70
CAediting_468517	chr6_31672646_+	ENSG00000240053.8	ENST00000375864	hsa-miR-433-5p	31672640	31672646	7mer-m8	31672624	31672647	163.00	-28.05
CAediting_468520	chr6_31672705_+	ENSG00000240053.8	ENST00000375864	hsa-miR-326	31672700	31672706	7mer-m8	31672688	31672707	140.00	-13.25
CAediting_468520	chr6_31672705_+	ENSG00000240053.8	ENST00000375864	hsa-miR-330-5p	31672700	31672706	7mer-m8	31672686	31672707	140.00	-20.55
CAediting_468520	chr6_31672705_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4314	31672699	31672705	7mer-m8	31672689	31672706	142.00	-20.10
CAediting_468520	chr6_31672705_+	ENSG00000240053.8	ENST00000375864	hsa-miR-514a-5p	31672701	31672707	7mer-m8	31672685	31672708	146.00	-18.63
CAediting_468520	chr6_31672705_+	ENSG00000240053.8	ENST00000375864	hsa-miR-514a-5p	31672701	31672707	7mer-m8	31672685	31672708	146.00	-18.63
CAediting_468520	chr6_31672705_+	ENSG00000240053.8	ENST00000375864	hsa-miR-514a-5p	31672701	31672707	7mer-m8	31672685	31672708	146.00	-18.63
CAediting_468521	chr6_31672706_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3189-3p	31672700	31672706	7mer-m8	31672685	31672707	147.00	-22.38
CAediting_468521	chr6_31672706_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6813-3p	31672701	31672707	7mer-m8	31672688	31672708	140.00	-10.68
CAediting_468523	chr6_31672727_+	ENSG00000240053.8	ENST00000375864	hsa-miR-663b	31672725	31672731	7mer-m8	31672707	31672732	148.00	-29.16
CAediting_468524	chr6_31673002_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4634	31672999	31673005	7mer-m8	31672983	31673006	151.00	-37.46
CAediting_468528	chr6_31673059_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6771-3p	31673056	31673062	7mer-m8	31673042	31673063	148.00	-17.24
CAediting_468530	chr6_31673067_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3176	31673064	31673070	7mer-m8	31673053	31673071	161.00	-24.88
CAediting_468530	chr6_31673067_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3922-3p	31673064	31673070	7mer-m8	31673048	31673071	154.00	-19.36
CAediting_468530	chr6_31673067_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6878-3p	31673063	31673069	7mer-m8	31673050	31673070	144.00	-26.98
CAediting_468531	chr6_31673080_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3190-5p	31673073	31673079	7mer-m8	31673061	31673080	154.00	-19.64
CAediting_468532	chr6_31673082_+	ENSG00000240053.8	ENST00000375864	hsa-miR-1306-3p	31673075	31673081	7mer-m8	31673065	31673082	152.00	-23.71
CAediting_468533	chr6_31673089_+	ENSG00000240053.8	ENST00000375864	hsa-miR-193a-5p	31673086	31673092	7mer-m8	31673068	31673093	145.00	-24.14
CAediting_468533	chr6_31673089_+	ENSG00000240053.8	ENST00000375864	hsa-miR-200c-5p	31673084	31673090	7mer-m8	31673070	31673091	145.00	-16.29
CAediting_468533	chr6_31673089_+	ENSG00000240053.8	ENST00000375864	hsa-miR-550a-3p	31673084	31673090	7mer-m8	31673070	31673091	143.00	-16.71
CAediting_468533	chr6_31673089_+	ENSG00000240053.8	ENST00000375864	hsa-miR-550a-3p	31673084	31673090	7mer-m8	31673070	31673091	143.00	-16.71
CAediting_468533	chr6_31673089_+	ENSG00000240053.8	ENST00000375864	hsa-miR-550a-3p	31673084	31673090	7mer-m8	31673070	31673091	143.00	-16.71
CAediting_468535	chr6_31673105_+	ENSG00000240053.8	ENST00000375864	hsa-miR-576-5p	31673100	31673107	8mer-1a	31673086	31673107	140.00	-5.61
CAediting_468536	chr6_31673106_+	ENSG00000240053.8	ENST00000375864	hsa-miR-26a-1-3p	31673104	31673111	8mer-1a	31673090	31673111	152.00	-12.63
CAediting_468536	chr6_31673106_+	ENSG00000240053.8	ENST00000375864	hsa-miR-26a-2-3p	31673104	31673111	8mer-1a	31673090	31673111	156.00	-11.12
CAediting_468539	chr6_31673114_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4659a-3p	31673109	31673115	7mer-m8	31673095	31673116	140.00	-8.53
CAediting_468539	chr6_31673114_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4659b-3p	31673109	31673115	7mer-m8	31673095	31673116	140.00	-9.72
CAediting_468541	chr6_31673116_+	ENSG00000240053.8	ENST00000375864	hsa-miR-5003-3p	31673110	31673116	7mer-m8	31673099	31673117	156.00	-10.24
CAediting_468541	chr6_31673116_+	ENSG00000240053.8	ENST00000375864	hsa-miR-627-3p	31673109	31673115	7mer-m8	31673097	31673116	142.00	-6.83
CAediting_468543	chr6_31673145_+	ENSG00000240053.8	ENST00000375864	hsa-miR-513a-5p	31673140	31673145	6mer	31673129	31673146	144.00	-22.99
CAediting_468543	chr6_31673145_+	ENSG00000240053.8	ENST00000375864	hsa-miR-513a-5p	31673140	31673145	6mer	31673129	31673146	144.00	-22.99
CAediting_468543	chr6_31673145_+	ENSG00000240053.8	ENST00000375864	hsa-miR-638	31673144	31673150	7mer-1a	31673126	31673150	155.00	-33.00
CAediting_468507	chr6_31672488_+	ENSG00000240053.8	ENST00000375864	hsa-miR-5587-3p	31672484	31672490	7mer-m8	31672468	31672491	151.00	-26.07
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548ae-3p	31672609	31672615	7mer-m8	31672595	31672616	143.00	-7.10
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548ae-3p	31672609	31672615	7mer-m8	31672595	31672616	143.00	-7.10
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548ah-3p	31672609	31672615	7mer-m8	31672597	31672616	144.00	-7.23
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548aj-3p	31672609	31672615	7mer-m8	31672595	31672616	143.00	-8.00
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548aj-3p	31672609	31672615	7mer-m8	31672595	31672616	143.00	-8.00
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548am-3p	31672609	31672615	7mer-m8	31672597	31672616	144.00	-7.23
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548aq-3p	31672609	31672615	7mer-m8	31672594	31672616	143.00	-7.48
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548j-3p	31672609	31672615	7mer-m8	31672596	31672616	141.00	-7.10
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548x-3p	31672609	31672615	7mer-m8	31672596	31672616	143.00	-8.00
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-548x-3p	31672609	31672615	7mer-m8	31672596	31672616	143.00	-8.00
CAediting_468515	chr6_31672611_+	ENSG00000240053.8	ENST00000375864	hsa-miR-7844-5p	31672607	31672613	7mer-m8	31672593	31672614	164.00	-22.69
CAediting_468519	chr6_31672704_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6771-5p	31672698	31672705	8mer-1a	31672682	31672705	158.00	-27.40
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-518a-3p	31673016	31673022	7mer-m8	31673003	31673023	146.00	-20.84
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-518a-3p	31673016	31673022	7mer-m8	31673003	31673023	146.00	-20.84
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-518b	31673016	31673022	7mer-m8	31673002	31673023	145.00	-19.00
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-518c-3p	31673016	31673022	7mer-m8	31673001	31673023	145.00	-18.18
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-518d-3p	31673016	31673022	7mer-m8	31673003	31673023	145.00	-19.49
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-518e-3p	31673015	31673021	7mer-m8	31673002	31673022	140.00	-12.84
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-518f-3p	31673016	31673022	7mer-m8	31673003	31673023	145.00	-14.69
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-526a-3p	31673016	31673022	7mer-m8	31673002	31673023	145.00	-14.92
CAediting_468527	chr6_31673051_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4733-5p	31673047	31673053	7mer-m8	31673032	31673054	150.00	-18.60
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-125a-5p	31673155	31673161	7mer-m8	31673139	31673162	141.00	-18.40
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-125b-5p	31673155	31673161	7mer-m8	31673141	31673162	141.00	-16.11
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-125b-5p	31673155	31673161	7mer-m8	31673141	31673162	141.00	-16.11
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3943	31673159	31673165	7mer-m8	31673146	31673166	150.00	-22.11
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4313	31673158	31673164	7mer-m8	31673146	31673165	146.00	-21.10
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4319	31673155	31673161	7mer-m8	31673146	31673162	142.00	-17.68
CAediting_468545	chr6_31673170_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6747-3p	31673167	31673174	8mer-1a	31673152	31673174	149.00	-23.42
CAediting_468546	chr6_31673178_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6845-3p	31673171	31673177	7mer-m8	31673158	31673178	155.00	-21.98
CAediting_468549	chr6_31673218_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6790-3p	31673213	31673219	7mer-m8	31673200	31673220	150.00	-27.71
CAediting_468552	chr6_31673274_+	ENSG00000240053.8	ENST00000375864	hsa-miR-188-5p	31673271	31673277	7mer-m8	31673260	31673278	148.00	-24.26
CAediting_468552	chr6_31673274_+	ENSG00000240053.8	ENST00000375864	hsa-miR-204-5p	31673270	31673276	7mer-m8	31673256	31673277	142.00	-10.53
CAediting_468552	chr6_31673274_+	ENSG00000240053.8	ENST00000375864	hsa-miR-211-5p	31673270	31673276	7mer-m8	31673256	31673277	142.00	-11.69
CAediting_468552	chr6_31673274_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6832-3p	31673269	31673276	8mer-1a	31673257	31673276	147.00	-9.61
CAediting_468552	chr6_31673274_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6866-3p	31673271	31673277	7mer-m8	31673257	31673278	154.00	-10.38

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-1200	31673155	31673161	7mer-m8	31673141	31673162	141	-17.86
CAediting_468526	chr6_31673046_+	ENSG00000240053.8	ENST00000375864	hsa-miR-1245a	31673041	31673047	7mer-m8	31673032	31673048	146	-20.1
CAediting_468507	chr6_31672488_+	ENSG00000240053.8	ENST00000375864	hsa-miR-1262	31672481	31672487	7mer-m8	31672467	31672488	140	-15.41
CAediting_468528	chr6_31673059_+	ENSG00000240053.8	ENST00000375864	hsa-miR-150-5p	31673053	31673059	7mer-m8	31673039	31673060	142	-15.89
CAediting_468513	chr6_31672586_+	ENSG00000240053.8	ENST00000375864	hsa-miR-20b-3p	31672580	31672586	7mer-m8	31672565	31672587	153	-18.18
CAediting_468527	chr6_31673051_+	ENSG00000240053.8	ENST00000375864	hsa-miR-216a-5p	31673048	31673054	7mer-m8	31673034	31673055	149	-16.52
CAediting_468533	chr6_31673089_+	ENSG00000240053.8	ENST00000375864	hsa-miR-2681-5p	31673083	31673089	7mer-m8	31673066	31673090	152	-20.57
CAediting_468534	chr6_31673090_+	ENSG00000240053.8	ENST00000375864	hsa-miR-2681-5p	31673083	31673089	7mer-m8	31673066	31673090	152	-20.57
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-302a-3p	31673015	31673021	7mer-m8	31673001	31673022	147	-18.35
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-302b-3p	31673015	31673021	7mer-m8	31673000	31673022	141	-10.56
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-302c-3p	31673015	31673021	7mer-m8	31673001	31673022	143	-13.12
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-302d-3p	31673015	31673021	7mer-m8	31672999	31673022	144	-14.89
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-302e	31673015	31673021	7mer-m8	31673006	31673022	141	-8.96
CAediting_468519	chr6_31672704_+	ENSG00000240053.8	ENST00000375864	hsa-miR-30b-3p	31672697	31672704	8mer-1a	31672683	31672704	154	-17.7
CAediting_468510	chr6_31672545_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3135b	31672541	31672546	6mer	31672526	31672547	144	-20.51
CAediting_468509	chr6_31672519_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3174	31672515	31672521	7mer-1a	31672501	31672521	146	-24.89
CAediting_468508	chr6_31672500_+	ENSG00000240053.8	ENST00000375864	hsa-miR-324-3p	31672497	31672503	7mer-m8	31672482	31672504	147	-21.73
CAediting_468523	chr6_31672727_+	ENSG00000240053.8	ENST00000375864	hsa-miR-342-3p	31672721	31672727	7mer-m8	31672702	31672728	153	-18.44
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3609	31673017	31673022	6mer	31673001	31673023	144	-22.69
CAediting_468507	chr6_31672488_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3620-3p	31672486	31672492	7mer-m8	31672472	31672493	143	-15.19
CAediting_468530	chr6_31673067_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3663-5p	31673064	31673070	7mer-m8	31673051	31673071	140	-21.7
CAediting_468519	chr6_31672704_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3689a-3p	31672697	31672704	8mer-1a	31672684	31672704	147	-18.11
CAediting_468519	chr6_31672704_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3689b-3p	31672697	31672704	8mer-1a	31672684	31672704	147	-18.84
CAediting_468519	chr6_31672704_+	ENSG00000240053.8	ENST00000375864	hsa-miR-3689c	31672697	31672704	8mer-1a	31672684	31672704	147	-18.84
CAediting_468529	chr6_31673065_+	ENSG00000240053.8	ENST00000375864	hsa-miR-371a-5p	31673059	31673066	8mer-1a	31673047	31673066	145	-13.2
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-372-3p	31673015	31673021	7mer-m8	31673000	31673022	152	-22.77
CAediting_468508	chr6_31672500_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4252	31672498	31672505	8mer-1a	31672486	31672505	148	-21.38
CAediting_468523	chr6_31672727_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4284	31672723	31672730	8mer-1a	31672713	31672730	151	-19.56
CAediting_468507	chr6_31672488_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4292	31672484	31672490	7mer-m8	31672474	31672491	140	-17.5
CAediting_468518	chr6_31672655_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4293	31672652	31672658	7mer-m8	31672643	31672659	146	-21.19
CAediting_468545	chr6_31673170_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4421	31673167	31673174	8mer-1a	31673153	31673174	140	-15.53
CAediting_468512	chr6_31672562_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4478	31672559	31672565	7mer-m8	31672551	31672566	149	-25.05
CAediting_468548	chr6_31673216_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4638-5p	31673210	31673217	8mer-1a	31673198	31673217	146	-20.28
CAediting_468512	chr6_31672562_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4649-3p	31672556	31672562	7mer-m8	31672543	31672563	140	-14.11
CAediting_468507	chr6_31672488_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4701-3p	31672481	31672487	7mer-m8	31672468	31672488	153	-22.36
CAediting_468531	chr6_31673080_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4716-5p	31673078	31673084	7mer-m8	31673064	31673085	140	-11.3
CAediting_468532	chr6_31673082_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4716-5p	31673078	31673084	7mer-m8	31673064	31673085	140	-11.3
CAediting_468531	chr6_31673080_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4781-3p	31673076	31673082	7mer-m8	31673065	31673083	144	-13.86
CAediting_468532	chr6_31673082_+	ENSG00000240053.8	ENST00000375864	hsa-miR-4781-3p	31673076	31673082	7mer-m8	31673065	31673083	144	-13.86
CAediting_468552	chr6_31673274_+	ENSG00000240053.8	ENST00000375864	hsa-miR-501-5p	31673271	31673277	7mer-m8	31673259	31673278	145	-12.35
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-512-3p	31673014	31673020	7mer-m8	31673000	31673021	153	-16.51
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-512-3p	31673014	31673020	7mer-m8	31673000	31673021	153	-16.51
CAediting_468527	chr6_31673051_+	ENSG00000240053.8	ENST00000375864	hsa-miR-513c-5p	31673046	31673052	7mer-m8	31673031	31673053	147	-19.94
CAediting_468527	chr6_31673051_+	ENSG00000240053.8	ENST00000375864	hsa-miR-514b-5p	31673046	31673052	7mer-m8	31673032	31673053	144	-15.44
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-519d-3p	31673016	31673022	7mer-m8	31673002	31673023	140	-13.73
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-520a-3p	31673015	31673021	7mer-m8	31673001	31673022	140	-14.12
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-520b-3p	31673015	31673021	7mer-m8	31673002	31673022	140	-13.73
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-520c-3p	31673015	31673021	7mer-m8	31673001	31673022	140	-13.73
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-520d-3p	31673015	31673021	7mer-m8	31672999	31673022	142	-18.21
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-520e-3p	31673015	31673021	7mer-m8	31673002	31673022	140	-12.72
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-520g-3p	31673017	31673023	7mer-m8	31673001	31673024	150	-15.97
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-520h	31673017	31673023	7mer-m8	31673003	31673024	150	-13.15
CAediting_468525	chr6_31673019_+	ENSG00000240053.8	ENST00000375864	hsa-miR-526b-3p	31673016	31673022	7mer-m8	31673002	31673023	145	-14.32
CAediting_468550	chr6_31673226_+	ENSG00000240053.8	ENST00000375864	hsa-miR-5693	31673222	31673228	7mer-m8	31673209	31673229	143	-18.76
CAediting_468545	chr6_31673170_+	ENSG00000240053.8	ENST00000375864	hsa-miR-5699-3p	31673167	31673174	8mer-1a	31673153	31673174	155	-23.74
CAediting_468509	chr6_31672519_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6073	31672516	31672523	8mer-1a	31672500	31672523	148	-22.88
CAediting_468530	chr6_31673067_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6131	31673065	31673071	7mer-m8	31673054	31673072	140	-16.72
CAediting_468543	chr6_31673145_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6504-3p	31673140	31673146	7mer-m8	31673128	31673147	140	-12.11
CAediting_468507	chr6_31672488_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6736-5p	31672481	31672487	7mer-m8	31672464	31672488	144	-22.13
CAediting_468507	chr6_31672488_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6742-3p	31672483	31672489	7mer-m8	31672471	31672490	140	-13.41
CAediting_468545	chr6_31673170_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6748-3p	31673168	31673174	7mer-1a	31673154	31673174	141	-26.72
CAediting_468519	chr6_31672704_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6779-5p	31672697	31672704	8mer-1a	31672685	31672704	141	-21.77
CAediting_468519	chr6_31672704_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6780a-5p	31672697	31672704	8mer-1a	31672680	31672704	151	-21.68
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6791-3p	31673158	31673164	7mer-m8	31673145	31673165	154	-17.64
CAediting_468507	chr6_31672488_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6791-5p	31672484	31672490	7mer-m8	31672467	31672491	153	-30.39
CAediting_468508	chr6_31672500_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6807-3p	31672496	31672501	6mer	31672480	31672502	154	-28.7
CAediting_468524	chr6_31673002_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6807-5p	31672995	31673001	7mer-m8	31672981	31673002	140	-20.68
CAediting_468544	chr6_31673162_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6829-3p	31673158	31673164	7mer-m8	31673146	31673165	155	-20.58
CAediting_468529	chr6_31673065_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6843-3p	31673063	31673069	7mer-m8	31673050	31673070	152	-19.65
CAediting_468530	chr6_31673067_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6843-3p	31673063	31673069	7mer-m8	31673050	31673070	152	-19.65
CAediting_468529	chr6_31673065_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6848-3p	31673063	31673069	7mer-m8	31673053	31673070	147	-20.74
CAediting_468530	chr6_31673067_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6848-3p	31673063	31673069	7mer-m8	31673053	31673070	147	-20.74
CAediting_468512	chr6_31672562_+	ENSG00000240053.8	ENST00000375864	hsa-miR-7160-5p	31672557	31672563	7mer-m8	31672544	31672564	146	-20.4
CAediting_468508	chr6_31672500_+	ENSG00000240053.8	ENST00000375864	hsa-miR-7703	31672493	31672499	7mer-m8	31672478	31672500	154	-20.29
CAediting_468517	chr6_31672646_+	ENSG00000240053.8	ENST00000375864	hsa-miR-7855-5p	31672640	31672645	6mer	31672626	31672646	140	-24.29
CAediting_468546	chr6_31673178_+	ENSG00000240053.8	ENST00000375864	hsa-miR-8062	31673176	31673182	7mer-m8	31673163	31673183	141	-8.67
CAediting_468526	chr6_31673046_+	ENSG00000240053.8	ENST00000375864	hsa-miR-8079	31673041	31673047	7mer-m8	31673029	31673048	149	-16.68
CAediting_468519	chr6_31672704_+	ENSG00000240053.8	ENST00000375864	hsa-miR-887-5p	31672698	31672705	8mer-1a	31672685	31672705	141	-11.19
CAediting_468520	chr6_31672705_+	ENSG00000240053.8	ENST00000375864	hsa-miR-887-5p	31672698	31672705	8mer-1a	31672685	31672705	141	-11.19
CAediting_468509	chr6_31672519_+	ENSG00000240053.8	ENST00000375864	hsa-miR-921	31672515	31672521	7mer-m8	31672500	31672522	148	-13.93

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000240053.8	ENST00000375864	hsa-miR-605-3p	31672685	31672691	7mer-m8	31672669	31672692	153	-21.46
CAediting_748296	chr10_51299626_+	ENSG00000240053.8	ENST00000375864	hsa-miR-605-3p	31672329	31672335	7mer-m8	31672315	31672336	153	-16.12
CAediting_748296	chr10_51299626_+	ENSG00000240053.8	ENST00000409525	hsa-miR-605-3p	31672329	31672335	7mer-m8	31672315	31672336	153	-16.12
CAediting_1368054	chr19_46709310_-	ENSG00000240053.8	ENST00000375864	hsa-miR-320e	31673495	31673500	6mer	31673484	31673501	140	-18.91
CAediting_228905	chr2_188297554_+	ENSG00000240053.8	ENST00000375864	hsa-miR-561-3p	31672434	31672439	6mer	31672419	31672440	144	-18.64
CAediting_580943	chr7_100356700_+	ENSG00000240053.8	ENST00000375864	hsa-miR-6840-3p	31672533	31672539	7mer-m8	31672519	31672540	143	-27.39
CAediting_228905	chr2_188297554_+	ENSG00000240053.8	ENST00000409525	hsa-miR-561-3p	31672434	31672439	6mer	31672419	31672440	144	-18.64
CAediting_468389	chr6_31355314_-	ENSG00000240053.8	ENST00000375864	hsa-miR-6891-5p	31672688	31672694	7mer-m8	31672676	31672695	156	-25.36

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000240053.8	ENST00000375864	hsa-miR-1303	31672935	31672941	7mer-m8	31672921	31672942	155	-18.28
CAediting_846604	chr11_93733708_-	ENSG00000240053.8	ENST00000375864	hsa-miR-1304-3p	31673248	31673255	8mer-1a	31673234	31673255	149	-20.19
CAediting_524911	chr7_5495852_-	ENSG00000240053.8	ENST00000375864	hsa-miR-589-3p	31673366	31673372	7mer-m8	31673351	31673373	146	-14.9

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LY6G5B

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000375864.4	protein_coding
ENST00000471088.1	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_468504	ENST00000375864.4	chr6_31672468_+	-1110.00	-1106.90	-1103.50
CAediting_468505	ENST00000375864.4	chr6_31672469_+	-1110.70	-1106.90	-1103.50
CAediting_468506	ENST00000375864.4	chr6_31672470_+	-1106.40	-1106.90	-1103.50
CAediting_468507	ENST00000375864.4	chr6_31672488_+	-1106.20	-1106.90	-1103.50
CAediting_468508	ENST00000375864.4	chr6_31672500_+	-1106.20	-1106.90	-1103.50
CAediting_468509	ENST00000375864.4	chr6_31672519_+	-1106.50	-1106.90	-1103.50
CAediting_468510	ENST00000375864.4	chr6_31672545_+	-1106.90	-1106.90	-1103.50
CAediting_468511	ENST00000375864.4	chr6_31672549_+	-1106.30	-1106.90	-1103.50
CAediting_468512	ENST00000375864.4	chr6_31672562_+	-1106.20	-1106.90	-1103.50
CAediting_468513	ENST00000375864.4	chr6_31672586_+	-1106.20	-1106.90	-1103.50
CAediting_468514	ENST00000375864.4	chr6_31672600_+	-1106.50	-1106.90	-1103.50
CAediting_468515	ENST00000375864.4	chr6_31672611_+	-1107.80	-1106.90	-1103.50
CAediting_468516	ENST00000375864.4	chr6_31672626_+	-1106.50	-1106.90	-1103.50
CAediting_468517	ENST00000375864.4	chr6_31672646_+	-1106.50	-1106.90	-1103.50
CAediting_468518	ENST00000375864.4	chr6_31672655_+	-1106.20	-1106.90	-1103.50
CAediting_468519	ENST00000375864.4	chr6_31672704_+	-1106.60	-1106.90	-1103.50
CAediting_468520	ENST00000375864.4	chr6_31672705_+	-1107.00	-1106.90	-1103.50
CAediting_468521	ENST00000375864.4	chr6_31672706_+	-1106.60	-1106.90	-1103.50
CAediting_468522	ENST00000375864.4	chr6_31672718_+	-1106.90	-1106.90	-1103.50
CAediting_468523	ENST00000375864.4	chr6_31672727_+	-1106.00	-1106.90	-1103.50
CAediting_468524	ENST00000375864.4	chr6_31673002_+	-1106.50	-1106.90	-1103.50
CAediting_468525	ENST00000375864.4	chr6_31673019_+	-1106.50	-1106.90	-1103.50
CAediting_468526	ENST00000375864.4	chr6_31673046_+	-1107.20	-1106.90	-1103.50
CAediting_468527	ENST00000375864.4	chr6_31673051_+	-1107.20	-1106.90	-1103.50
CAediting_468528	ENST00000375864.4	chr6_31673059_+	-1106.00	-1106.90	-1103.50
CAediting_468529	ENST00000375864.4	chr6_31673065_+	-1106.00	-1106.90	-1103.50
CAediting_468530	ENST00000375864.4	chr6_31673067_+	-1106.30	-1106.90	-1103.50
CAediting_468531	ENST00000375864.4	chr6_31673080_+	-1106.90	-1106.90	-1103.50
CAediting_468532	ENST00000375864.4	chr6_31673082_+	-1106.50	-1106.90	-1103.50
CAediting_468533	ENST00000375864.4	chr6_31673089_+	-1107.00	-1106.90	-1103.50
CAediting_468534	ENST00000375864.4	chr6_31673090_+	-1106.90	-1106.90	-1103.50
CAediting_468535	ENST00000375864.4	chr6_31673105_+	-1107.00	-1106.90	-1103.50
CAediting_468536	ENST00000375864.4	chr6_31673106_+	-1107.00	-1106.90	-1103.50
CAediting_468537	ENST00000375864.4	chr6_31673107_+	-1107.00	-1106.90	-1103.50
CAediting_468538	ENST00000375864.4	chr6_31673108_+	-1106.90	-1106.90	-1103.50
CAediting_468539	ENST00000375864.4	chr6_31673114_+	-1107.00	-1106.90	-1103.50
CAediting_468540	ENST00000375864.4	chr6_31673115_+	-1107.00	-1106.90	-1103.50
CAediting_468541	ENST00000375864.4	chr6_31673116_+	-1106.90	-1106.90	-1103.50
CAediting_468542	ENST00000375864.4	chr6_31673137_+	-1108.60	-1106.90	-1103.50
CAediting_468543	ENST00000375864.4	chr6_31673145_+	-1106.60	-1106.90	-1103.50
CAediting_468544	ENST00000375864.4	chr6_31673162_+	-1106.00	-1106.90	-1103.50
CAediting_468545	ENST00000375864.4	chr6_31673170_+	-1114.10	-1106.90	-1103.50
CAediting_468546	ENST00000375864.4	chr6_31673178_+	-1106.90	-1106.90	-1103.50
CAediting_468547	ENST00000375864.4	chr6_31673186_+	-1106.40	-1106.90	-1103.50
CAediting_468548	ENST00000375864.4	chr6_31673216_+	-1106.00	-1106.90	-1103.50
CAediting_468549	ENST00000375864.4	chr6_31673218_+	-1106.30	-1106.90	-1103.50
CAediting_468550	ENST00000375864.4	chr6_31673226_+	-1106.50	-1106.90	-1103.50
CAediting_468551	ENST00000375864.4	chr6_31673231_+	-1106.50	-1106.90	-1103.50
CAediting_468552	ENST00000375864.4	chr6_31673274_+	-1108.40	-1106.90	-1103.50
CAediting_468544	ENST00000471088.1	chr6_31673162_+	-227.90	-226.10	-239.80
CAediting_468545	ENST00000471088.1	chr6_31673170_+	-231.10	-226.10	-239.80
CAediting_468546	ENST00000471088.1	chr6_31673178_+	-230.80	-226.10	-239.80
CAediting_468547	ENST00000471088.1	chr6_31673186_+	-229.30	-226.10	-239.80
CAediting_468548	ENST00000471088.1	chr6_31673216_+	-226.10	-226.10	-239.80
CAediting_468549	ENST00000471088.1	chr6_31673218_+	-226.10	-226.10	-239.80
CAediting_468550	ENST00000471088.1	chr6_31673226_+	-225.70	-226.10	-239.80
CAediting_468551	ENST00000471088.1	chr6_31673231_+	-225.40	-226.10	-239.80
CAediting_468552	ENST00000471088.1	chr6_31673274_+	-228.50	-226.10	-239.80

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Relation with ADAR for LY6G5B

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_468504	chr6_31672468_+	0.0333444129776026	0.217421958151978	.	.	.	.
BRCA	CAediting_468504	chr6_31672468_+	0.0365145286250468	0.153455751678514	.	.	.	.
LUAD	CAediting_468504	chr6_31672468_+	0.0320369905677808	0.190383450521393	.	.	.	.
LUSC	CAediting_468504	chr6_31672468_+	0.0489225654862526	0.200512437768391	.	.	.	.
SARC	CAediting_468504	chr6_31672468_+	.	.	.	.	0.0194353245947257	0.291503891694238
LGG	CAediting_468505	chr6_31672469_+	0.0206143675880249	0.23359958798471	.	.	.	.
LUAD	CAediting_468505	chr6_31672469_+	0.0384764298202954	0.287911905999526	.	.	.	.
BRCA	CAediting_468521	chr6_31672706_+	0.0498682968189454	0.14681219990629	.	.	.	.
THCA	CAediting_468521	chr6_31672706_+	0.0200469713045876	0.290119143626049	.	.	.	.
UCEC	CAediting_468521	chr6_31672706_+	0.0204524379329363	0.182563956910956	.	.	.	.
LGG	CAediting_468522	chr6_31672718_+	0.000632805093430851	0.24199202081255	.	.	.	.
STAD	CAediting_468522	chr6_31672718_+	0.00138718294816899	0.294718551293818	.	.	.	.
UCEC	CAediting_468522	chr6_31672718_+	.	.	0.00262031136899286	0.27345170025168	.	.
BLCA	CAediting_468524	chr6_31673002_+	0.000126145824520881	0.351424232855271	.	.	.	.
PRAD	CAediting_468524	chr6_31673002_+	0.0265166515968293	0.310631894590125	.	.	0.0300039788123892	0.304166686637218
STAD	CAediting_468524	chr6_31673002_+	0.032874567642251	0.207434527980613	.	.	.	.
BLCA	CAediting_468531	chr6_31673080_+	.	.	.	.	0.00721963019826186	0.237322565881487
PRAD	CAediting_468531	chr6_31673080_+	0.0447094416009043	0.249868151185422	.	.	.	.
LGG	CAediting_468532	chr6_31673082_+	.	.	4.21777525437765e-05	0.426548459219898	.	.
BRCA	CAediting_468532	chr6_31673082_+	.	.	.	.	0.0161646422707725	0.280665493303197
BRCA	CAediting_468534	chr6_31673090_+	0.0431669196386891	0.167604400870363	.	.	.	.
LGG	CAediting_468540	chr6_31673115_+	2.96493042006671e-08	0.425935762321666	.	.	.	.
BRCA	CAediting_468540	chr6_31673115_+	0.0212741940701423	0.246655779252225	.	.	.	.
UCEC	CAediting_468540	chr6_31673115_+	0.0463128912657321	0.269863673959526	.	.	.	.
SKCM	CAediting_468540	chr6_31673115_+	0.000237711698933761	0.480251578716418	.	.	.	.
LGG	CAediting_468541	chr6_31673116_+	3.19002571219164e-05	0.379102384743129	.	.	.	.
BRCA	CAediting_468541	chr6_31673116_+	0.0450545693608856	0.264211974453318	.	.	.	.
BLCA	CAediting_468543	chr6_31673145_+	0.0141821922874304	0.262124038338466	.	.	.	.
LUAD	CAediting_468543	chr6_31673145_+	0.00101402215462811	0.305161604591041	.	.	.	.
LAML	CAediting_468543	chr6_31673145_+	.	.	.	.	0.0192851910880544	0.329941079768672
TGCT	CAediting_468543	chr6_31673145_+	.	.	0.0118739823264294	0.334013774619522	.	.

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Relation with cancer stages for LY6G5B

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_468535	chr6_31673105_+	0.0388129327213423	0.235984486452353
BRCA	pathologic_stage	CAediting_468521	chr6_31672706_+	0.00265755646252696	0.225818425431046
BRCA	pathologic_stage	CAediting_468535	chr6_31673105_+	0.0434845785191126	-0.224948479980865
KIRC	pathologic_stage	CAediting_468504	chr6_31672468_+	0.0277658426587305	0.199279774913804
KIRC	pathologic_stage	CAediting_468521	chr6_31672706_+	0.00314174482273809	0.303124924963286
LUAD	pathologic_stage	CAediting_468524	chr6_31673002_+	0.00167593236619113	0.30735981912663
OV	clinical_stage	CAediting_468505	chr6_31672469_+	0.022347207268828	0.211981686157955
UCEC	clinical_stage	CAediting_468534	chr6_31673090_+	0.0355920207138173	-0.204384747447278

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Relation with survival for LY6G5B

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
BLCA	CAediting_468531	chr6_31673080_+	0.0147697526436694	0.014674	0.0151259
LGG	CAediting_468535	chr6_31673105_+	0.0408693970942186	0.0255461	358.306
LUSC	CAediting_468504	chr6_31672468_+	0.0299649316481522	0.00535669	0.00545648
ESCA	CAediting_468524	chr6_31673002_+	0.00305110947912579	0.00861232	91.8231
SKCM	CAediting_468534	chr6_31673090_+	0.0368237062042194	0.0325241	0.00606011

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RelatedDrugs for LY6G5B

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LY6G5B

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene