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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: MS4A7 (CAeditome ID:58475) |
Gene summary for MS4A7 |
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Gene information | Gene symbol | MS4A7 | Gene ID | 58475 |
Gene name | membrane spanning 4-domains A7 | |
Synonyms | 4SPAN2|CD20L4|CFFM4|MS4A8 | |
Cytomap | 11q12.2 | |
Type of gene | protein-coding | |
Description | membrane-spanning 4-domains subfamily A member 7CD20 antigen-like 4CD20/Fc-epsilon-RI-beta family member 4four-span transmembrane protein 2high affinity immunoglobulin epsilon receptor beta subunit | |
Modification date | 20210518 | |
UniProtAcc | Q9GZW8 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
MS4A7 | GO:0005802 | Membrane-spanning 4-domains subfamily A member 7 | 23874341 |
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RNA A-to-I events for MS4A7 |
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CAediting_816206(60383706, +), CAediting_816207(60385617, +), CAediting_816208(60385628, +), CAediting_816209(60385636, +), CAediting_816210(60385641, +), CAediting_816211(60385664, +), CAediting_816212(60385673, +), CAediting_816213(60385674, +), CAediting_816214(60385712, +), CAediting_816215(60385728, +), CAediting_816216(60385731, +), CAediting_816217(60385733, +), CAediting_816218(60385736, +), CAediting_816219(60385760, +), CAediting_816220(60385761, +), CAediting_816221(60385785, +), CAediting_816222(60387365, +), CAediting_816223(60387409, +), CAediting_816224(60387648, +), CAediting_816225(60387649, +), CAediting_816226(60387654, +), CAediting_816227(60387659, +), CAediting_816228(60387662, +), CAediting_816229(60387665, +), CAediting_816230(60387674, +), CAediting_816231(60387680, +), CAediting_816232(60387683, +), CAediting_816233(60387685, +), CAediting_816234(60387700, +), CAediting_816235(60387703, +), CAediting_816236(60387704, +), CAediting_816237(60387709, +), CAediting_816238(60387712, +), CAediting_816239(60387718, +), CAediting_816240(60387720, +), CAediting_816241(60387728, +), CAediting_816242(60387729, +), CAediting_816243(60387738, +), CAediting_816244(60387741, +), CAediting_816245(60387763, +), CAediting_816246(60387766, +), CAediting_816247(60387786, +), CAediting_816248(60387790, +), CAediting_816249(60387792, +), CAediting_816250(60387793, +), CAediting_816251(60387804, +), CAediting_816252(60387809, +), CAediting_816253(60387810, +), CAediting_816254(60387811, +), CAediting_816255(60387815, +), CAediting_816256(60387816, +), CAediting_816257(60387818, +), CAediting_816258(60387821, +), CAediting_816259(60387822, +), CAediting_816260(60387823, +), CAediting_816261(60387827, +), CAediting_816262(60387828, +), CAediting_816263(60388262, +), CAediting_816264(60388759, +), CAediting_816265(60388912, +), CAediting_816266(60388993, +), CAediting_816267(60389001, +), CAediting_816268(60389003, +), CAediting_816269(60389012, +), CAediting_816270(60389013, +), CAediting_816271(60389020, +), CAediting_816272(60389025, +), CAediting_816273(60389028, +), CAediting_816274(60389035, +), CAediting_816275(60389036, +), CAediting_816276(60389040, +), CAediting_816277(60389043, +), CAediting_816278(60389045, +), CAediting_816279(60389046, +), CAediting_816280(60389054, +), CAediting_816281(60389060, +), CAediting_816282(60389068, +), CAediting_816283(60389079, +), CAediting_816284(60389087, +), CAediting_816285(60389099, +), CAediting_816286(60391641, +), CAediting_816287(60391723, +), CAediting_816288(60391754, +), CAediting_816289(60391825, +), CAediting_816290(60392943, +), CAediting_816291(60392944, +), CAediting_816292(60392978, +), CAediting_816293(60393027, +), CAediting_816294(60394323, +), CAediting_816295(60394344, +), CAediting_816296(60394347, +), CAediting_816297(60394354, +), CAediting_816298(60394368, +), CAediting_816299(60394382, +), CAediting_816300(60394383, +), CAediting_816301(60394390, +), CAediting_816302(60394396, +), CAediting_816303(60394403, +), CAediting_816304(60394404, +), CAediting_816305(60394408, +), CAediting_816306(60394410, +), CAediting_816307(60394413, +), CAediting_816308(60394414, +), CAediting_816309(60394441, +), CAediting_816310(60394455, +), CAediting_816311(60394464, +), CAediting_816312(60394492, +), CAediting_816313(60394545, +), CAediting_816314(60394591, +), CAediting_816315(60394602, +), CAediting_816316(60394614, +), CAediting_816317(60394615, +), CAediting_816318(60394652, +), CAediting_816319(60394659, +), CAediting_816320(60394687, +), CAediting_816321(60394691, +), CAediting_816322(60394698, +), CAediting_816323(60394704, +), CAediting_816324(60394722, +), CAediting_816325(60394723, +), CAediting_816326(60394730, +), CAediting_816327(60394731, +), CAediting_816328(60394747, +), CAediting_816329(60394759, +), CAediting_816330(60394788, +), CAediting_816331(60394790, +), |
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RNA editing positional annotations for MS4A7 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_816206 | chr11_60383706_+ | ncRNA_intronic |
CAediting_816207 | chr11_60385617_+ | ncRNA_intronic |
CAediting_816208 | chr11_60385628_+ | ncRNA_intronic |
CAediting_816209 | chr11_60385636_+ | ncRNA_intronic |
CAediting_816210 | chr11_60385641_+ | ncRNA_intronic |
CAediting_816211 | chr11_60385664_+ | ncRNA_intronic |
CAediting_816212 | chr11_60385673_+ | ncRNA_intronic |
CAediting_816213 | chr11_60385674_+ | ncRNA_intronic |
CAediting_816214 | chr11_60385712_+ | ncRNA_intronic |
CAediting_816215 | chr11_60385728_+ | ncRNA_intronic |
CAediting_816216 | chr11_60385731_+ | ncRNA_intronic |
CAediting_816217 | chr11_60385733_+ | ncRNA_intronic |
CAediting_816218 | chr11_60385736_+ | ncRNA_intronic |
CAediting_816219 | chr11_60385760_+ | ncRNA_intronic |
CAediting_816220 | chr11_60385761_+ | ncRNA_intronic |
CAediting_816221 | chr11_60385785_+ | ncRNA_intronic |
CAediting_816222 | chr11_60387365_+ | ncRNA_intronic |
CAediting_816223 | chr11_60387409_+ | ncRNA_intronic |
CAediting_816224 | chr11_60387648_+ | ncRNA_intronic |
CAediting_816225 | chr11_60387649_+ | ncRNA_intronic |
CAediting_816226 | chr11_60387654_+ | ncRNA_intronic |
CAediting_816227 | chr11_60387659_+ | ncRNA_intronic |
CAediting_816228 | chr11_60387662_+ | ncRNA_intronic |
CAediting_816229 | chr11_60387665_+ | ncRNA_intronic |
CAediting_816230 | chr11_60387674_+ | ncRNA_intronic |
CAediting_816231 | chr11_60387680_+ | ncRNA_intronic |
CAediting_816232 | chr11_60387683_+ | ncRNA_intronic |
CAediting_816233 | chr11_60387685_+ | ncRNA_intronic |
CAediting_816234 | chr11_60387700_+ | ncRNA_intronic |
CAediting_816235 | chr11_60387703_+ | ncRNA_intronic |
CAediting_816236 | chr11_60387704_+ | ncRNA_intronic |
CAediting_816237 | chr11_60387709_+ | ncRNA_intronic |
CAediting_816238 | chr11_60387712_+ | ncRNA_intronic |
CAediting_816239 | chr11_60387718_+ | ncRNA_intronic |
CAediting_816240 | chr11_60387720_+ | ncRNA_intronic |
CAediting_816241 | chr11_60387728_+ | ncRNA_intronic |
CAediting_816242 | chr11_60387729_+ | ncRNA_intronic |
CAediting_816243 | chr11_60387738_+ | ncRNA_intronic |
CAediting_816244 | chr11_60387741_+ | ncRNA_intronic |
CAediting_816245 | chr11_60387763_+ | ncRNA_intronic |
CAediting_816246 | chr11_60387766_+ | ncRNA_intronic |
CAediting_816247 | chr11_60387786_+ | ncRNA_intronic |
CAediting_816248 | chr11_60387790_+ | ncRNA_intronic |
CAediting_816249 | chr11_60387792_+ | ncRNA_intronic |
CAediting_816250 | chr11_60387793_+ | ncRNA_intronic |
CAediting_816251 | chr11_60387804_+ | ncRNA_intronic |
CAediting_816252 | chr11_60387809_+ | ncRNA_intronic |
CAediting_816253 | chr11_60387810_+ | ncRNA_intronic |
CAediting_816254 | chr11_60387811_+ | ncRNA_intronic |
CAediting_816255 | chr11_60387815_+ | ncRNA_intronic |
CAediting_816256 | chr11_60387816_+ | ncRNA_intronic |
CAediting_816257 | chr11_60387818_+ | ncRNA_intronic |
CAediting_816258 | chr11_60387821_+ | ncRNA_intronic |
CAediting_816259 | chr11_60387822_+ | ncRNA_intronic |
CAediting_816260 | chr11_60387823_+ | ncRNA_intronic |
CAediting_816261 | chr11_60387827_+ | ncRNA_intronic |
CAediting_816262 | chr11_60387828_+ | ncRNA_intronic |
CAediting_816263 | chr11_60388262_+ | ncRNA_intronic |
CAediting_816264 | chr11_60388759_+ | ncRNA_intronic |
CAediting_816265 | chr11_60388912_+ | ncRNA_intronic |
CAediting_816266 | chr11_60388993_+ | ncRNA_intronic |
CAediting_816267 | chr11_60389001_+ | ncRNA_intronic |
CAediting_816268 | chr11_60389003_+ | ncRNA_intronic |
CAediting_816269 | chr11_60389012_+ | ncRNA_intronic |
CAediting_816270 | chr11_60389013_+ | ncRNA_intronic |
CAediting_816271 | chr11_60389020_+ | ncRNA_intronic |
CAediting_816272 | chr11_60389025_+ | ncRNA_intronic |
CAediting_816273 | chr11_60389028_+ | ncRNA_intronic |
CAediting_816274 | chr11_60389035_+ | ncRNA_intronic |
CAediting_816275 | chr11_60389036_+ | ncRNA_exonic |
CAediting_816276 | chr11_60389040_+ | ncRNA_exonic |
CAediting_816277 | chr11_60389043_+ | ncRNA_exonic |
CAediting_816278 | chr11_60389045_+ | ncRNA_exonic |
CAediting_816279 | chr11_60389046_+ | ncRNA_exonic |
CAediting_816280 | chr11_60389054_+ | ncRNA_exonic |
CAediting_816281 | chr11_60389060_+ | ncRNA_exonic |
CAediting_816282 | chr11_60389068_+ | ncRNA_exonic |
CAediting_816283 | chr11_60389079_+ | ncRNA_exonic |
CAediting_816284 | chr11_60389087_+ | ncRNA_exonic |
CAediting_816285 | chr11_60389099_+ | ncRNA_exonic |
CAediting_816286 | chr11_60391641_+ | ncRNA_intronic |
CAediting_816287 | chr11_60391723_+ | ncRNA_intronic |
CAediting_816288 | chr11_60391754_+ | ncRNA_intronic |
CAediting_816289 | chr11_60391825_+ | ncRNA_intronic |
CAediting_816290 | chr11_60392943_+ | ncRNA_intronic |
CAediting_816291 | chr11_60392944_+ | ncRNA_intronic |
CAediting_816292 | chr11_60392978_+ | ncRNA_intronic |
CAediting_816293 | chr11_60393027_+ | ncRNA_intronic |
CAediting_816294 | chr11_60394323_+ | UTR3 |
CAediting_816295 | chr11_60394344_+ | UTR3 |
CAediting_816296 | chr11_60394347_+ | UTR3 |
CAediting_816297 | chr11_60394354_+ | UTR3 |
CAediting_816298 | chr11_60394368_+ | UTR3 |
CAediting_816299 | chr11_60394382_+ | UTR3 |
CAediting_816300 | chr11_60394383_+ | UTR3 |
CAediting_816301 | chr11_60394390_+ | UTR3 |
CAediting_816302 | chr11_60394396_+ | UTR3 |
CAediting_816303 | chr11_60394403_+ | UTR3 |
CAediting_816304 | chr11_60394404_+ | UTR3 |
CAediting_816305 | chr11_60394408_+ | UTR3 |
CAediting_816306 | chr11_60394410_+ | UTR3 |
CAediting_816307 | chr11_60394413_+ | UTR3 |
CAediting_816308 | chr11_60394414_+ | UTR3 |
CAediting_816309 | chr11_60394441_+ | UTR3 |
CAediting_816310 | chr11_60394455_+ | UTR3 |
CAediting_816311 | chr11_60394464_+ | UTR3 |
CAediting_816312 | chr11_60394492_+ | UTR3 |
CAediting_816313 | chr11_60394545_+ | UTR3 |
CAediting_816314 | chr11_60394591_+ | UTR3 |
CAediting_816315 | chr11_60394602_+ | UTR3 |
CAediting_816316 | chr11_60394614_+ | UTR3 |
CAediting_816317 | chr11_60394615_+ | UTR3 |
CAediting_816318 | chr11_60394652_+ | UTR3 |
CAediting_816319 | chr11_60394659_+ | UTR3 |
CAediting_816320 | chr11_60394687_+ | UTR3 |
CAediting_816321 | chr11_60394691_+ | UTR3 |
CAediting_816322 | chr11_60394698_+ | UTR3 |
CAediting_816323 | chr11_60394704_+ | UTR3 |
CAediting_816324 | chr11_60394722_+ | UTR3 |
CAediting_816325 | chr11_60394723_+ | UTR3 |
CAediting_816326 | chr11_60394730_+ | UTR3 |
CAediting_816327 | chr11_60394731_+ | UTR3 |
CAediting_816328 | chr11_60394747_+ | UTR3 |
CAediting_816329 | chr11_60394759_+ | UTR3 |
CAediting_816330 | chr11_60394788_+ | UTR3 |
CAediting_816331 | chr11_60394790_+ | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_816206 | chr11_60383706_+ | SINE | Alu | AluSx4 |
CAediting_816263 | chr11_60388262_+ | SINE | MIR | MIR3 |
CAediting_816286 | chr11_60391641_+ | SINE | Alu | AluSx |
CAediting_816287 | chr11_60391723_+ | SINE | Alu | AluSx |
CAediting_816288 | chr11_60391754_+ | SINE | Alu | AluSx |
CAediting_816289 | chr11_60391825_+ | SINE | Alu | AluSx |
CAediting_816290 | chr11_60392943_+ | SINE | Alu | AluSc8 |
CAediting_816291 | chr11_60392944_+ | SINE | Alu | AluSc8 |
CAediting_816292 | chr11_60392978_+ | SINE | Alu | AluSc8 |
CAediting_816293 | chr11_60393027_+ | SINE | Alu | AluSc8 |
CAediting_816313 | chr11_60394545_+ | SINE | Alu | AluSx3 |
CAediting_816314 | chr11_60394591_+ | SINE | Alu | AluSx3 |
CAediting_816315 | chr11_60394602_+ | SINE | Alu | AluSx3 |
CAediting_816316 | chr11_60394614_+ | SINE | Alu | AluSx3 |
CAediting_816317 | chr11_60394615_+ | SINE | Alu | AluSx3 |
CAediting_816318 | chr11_60394652_+ | SINE | Alu | AluSx3 |
CAediting_816319 | chr11_60394659_+ | SINE | Alu | AluSx3 |
CAediting_816320 | chr11_60394687_+ | SINE | Alu | AluSx3 |
CAediting_816321 | chr11_60394691_+ | SINE | Alu | AluSx3 |
CAediting_816322 | chr11_60394698_+ | SINE | Alu | AluSx3 |
CAediting_816323 | chr11_60394704_+ | SINE | Alu | AluSx3 |
CAediting_816324 | chr11_60394722_+ | SINE | Alu | AluSx3 |
CAediting_816325 | chr11_60394723_+ | SINE | Alu | AluSx3 |
CAediting_816326 | chr11_60394730_+ | SINE | Alu | AluSx3 |
CAediting_816327 | chr11_60394731_+ | SINE | Alu | AluSx3 |
CAediting_816328 | chr11_60394747_+ | SINE | Alu | AluSx3 |
CAediting_816329 | chr11_60394759_+ | SINE | Alu | AluSx3 |
CAediting_816330 | chr11_60394788_+ | SINE | Alu | AluSx3 |
CAediting_816331 | chr11_60394790_+ | SINE | Alu | AluSx3 |
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RNA A-to-I editing events in the alternative splicing sites for MS4A7 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MS4A7 |
![]() * The grey color means N/A. |
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![]() * Click on the image to enlarge it in a new window. |
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Protein coding region RNA A-to-I editings for MS4A7 |
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The effects of the RNA editing to the miRNA binding sites for MS4A7 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_816308 | chr11_60394414_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-370-3p | 60394408 | 60394414 | 7mer-m8 | 60394393 | 60394415 | 150.00 | -24.55 |
CAediting_816308 | chr11_60394414_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6893-3p | 60394408 | 60394414 | 7mer-m8 | 60394394 | 60394415 | 140.00 | -13.00 |
CAediting_816308 | chr11_60394414_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6894-3p | 60394410 | 60394416 | 7mer-m8 | 60394397 | 60394417 | 141.00 | -12.11 |
CAediting_816308 | chr11_60394414_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-370-3p | 60394408 | 60394414 | 7mer-m8 | 60394393 | 60394415 | 150.00 | -24.55 |
CAediting_816308 | chr11_60394414_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6893-3p | 60394408 | 60394414 | 7mer-m8 | 60394394 | 60394415 | 140.00 | -13.00 |
CAediting_816308 | chr11_60394414_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6894-3p | 60394410 | 60394416 | 7mer-m8 | 60394397 | 60394417 | 141.00 | -12.11 |
CAediting_816313 | chr11_60394545_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-513a-5p | 60394539 | 60394545 | 7mer-m8 | 60394529 | 60394546 | 148.00 | -20.07 |
CAediting_816313 | chr11_60394545_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-513a-5p | 60394539 | 60394545 | 7mer-m8 | 60394529 | 60394546 | 148.00 | -20.07 |
CAediting_816313 | chr11_60394545_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-638 | 60394544 | 60394550 | 7mer-1a | 60394526 | 60394550 | 151.00 | -32.12 |
CAediting_816316 | chr11_60394614_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3655 | 60394612 | 60394618 | 7mer-m8 | 60394598 | 60394619 | 149.00 | -18.62 |
CAediting_816294 | chr11_60394323_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-1468-5p | 60394318 | 60394324 | 7mer-m8 | 60394305 | 60394325 | 141.00 | -9.34 |
CAediting_816294 | chr11_60394323_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-1468-5p | 60394318 | 60394324 | 7mer-m8 | 60394305 | 60394325 | 141.00 | -9.34 |
CAediting_816296 | chr11_60394347_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4641 | 60394342 | 60394348 | 7mer-m8 | 60394326 | 60394349 | 141.00 | -14.45 |
CAediting_816296 | chr11_60394347_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-4641 | 60394342 | 60394348 | 7mer-m8 | 60394326 | 60394349 | 141.00 | -14.45 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3622a-3p | 60394379 | 60394385 | 7mer-m8 | 60394365 | 60394386 | 140.00 | -13.24 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3622b-3p | 60394379 | 60394385 | 7mer-m8 | 60394366 | 60394386 | 145.00 | -15.85 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4251 | 60394376 | 60394382 | 7mer-m8 | 60394367 | 60394383 | 142.00 | -13.66 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4324 | 60394377 | 60394383 | 7mer-m8 | 60394365 | 60394384 | 142.00 | -11.01 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6804-3p | 60394380 | 60394386 | 7mer-m8 | 60394366 | 60394387 | 140.00 | -14.44 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-3622a-3p | 60394379 | 60394385 | 7mer-m8 | 60394365 | 60394386 | 140.00 | -13.24 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-3622b-3p | 60394379 | 60394385 | 7mer-m8 | 60394366 | 60394386 | 145.00 | -15.85 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-4251 | 60394376 | 60394382 | 7mer-m8 | 60394367 | 60394383 | 142.00 | -13.66 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-4324 | 60394377 | 60394383 | 7mer-m8 | 60394365 | 60394384 | 142.00 | -11.01 |
CAediting_816300 | chr11_60394383_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6804-3p | 60394380 | 60394386 | 7mer-m8 | 60394366 | 60394387 | 140.00 | -14.44 |
CAediting_816301 | chr11_60394390_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4733-5p | 60394387 | 60394393 | 7mer-m8 | 60394372 | 60394394 | 150.00 | -13.40 |
CAediting_816301 | chr11_60394390_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-4733-5p | 60394387 | 60394393 | 7mer-m8 | 60394372 | 60394394 | 150.00 | -13.40 |
CAediting_816305 | chr11_60394408_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4520-5p | 60394404 | 60394410 | 7mer-m8 | 60394392 | 60394411 | 150.00 | -14.17 |
CAediting_816305 | chr11_60394408_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4520-5p | 60394404 | 60394410 | 7mer-m8 | 60394392 | 60394411 | 150.00 | -14.17 |
CAediting_816305 | chr11_60394408_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-4520-5p | 60394404 | 60394410 | 7mer-m8 | 60394392 | 60394411 | 150.00 | -14.17 |
CAediting_816305 | chr11_60394408_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-4520-5p | 60394404 | 60394410 | 7mer-m8 | 60394392 | 60394411 | 150.00 | -14.17 |
CAediting_816309 | chr11_60394441_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-31-5p | 60394436 | 60394443 | 8mer-1a | 60394422 | 60394443 | 155.00 | -15.71 |
CAediting_816309 | chr11_60394441_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-31-5p | 60394436 | 60394443 | 8mer-1a | 60394422 | 60394443 | 155.00 | -15.71 |
CAediting_816310 | chr11_60394455_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-378j | 60394448 | 60394455 | 8mer-1a | 60394437 | 60394455 | 148.00 | -12.39 |
CAediting_816310 | chr11_60394455_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4782-5p | 60394449 | 60394455 | 7mer-m8 | 60394435 | 60394456 | 145.00 | -11.80 |
CAediting_816310 | chr11_60394455_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-5706 | 60394449 | 60394455 | 7mer-m8 | 60394434 | 60394456 | 161.00 | -17.60 |
CAediting_816310 | chr11_60394455_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6839-5p | 60394448 | 60394455 | 8mer-1a | 60394434 | 60394455 | 142.00 | -12.94 |
CAediting_816310 | chr11_60394455_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-378j | 60394448 | 60394455 | 8mer-1a | 60394437 | 60394455 | 148.00 | -12.39 |
CAediting_816310 | chr11_60394455_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-4782-5p | 60394449 | 60394455 | 7mer-m8 | 60394435 | 60394456 | 145.00 | -11.80 |
CAediting_816310 | chr11_60394455_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-5706 | 60394449 | 60394455 | 7mer-m8 | 60394434 | 60394456 | 161.00 | -17.60 |
CAediting_816310 | chr11_60394455_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6839-5p | 60394448 | 60394455 | 8mer-1a | 60394434 | 60394455 | 142.00 | -12.94 |
CAediting_816312 | chr11_60394492_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-5687 | 60394490 | 60394496 | 7mer-m8 | 60394476 | 60394497 | 140.00 | -13.08 |
CAediting_816312 | chr11_60394492_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-5687 | 60394490 | 60394496 | 7mer-m8 | 60394476 | 60394497 | 140.00 | -13.08 |
CAediting_816315 | chr11_60394602_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3176 | 60394599 | 60394605 | 7mer-m8 | 60394588 | 60394606 | 156.00 | -23.27 |
CAediting_816315 | chr11_60394602_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3922-3p | 60394599 | 60394605 | 7mer-m8 | 60394582 | 60394606 | 157.00 | -22.73 |
CAediting_816315 | chr11_60394602_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6878-3p | 60394598 | 60394604 | 7mer-m8 | 60394583 | 60394605 | 150.00 | -24.79 |
CAediting_816321 | chr11_60394691_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-1207-3p | 60394684 | 60394690 | 7mer-m8 | 60394673 | 60394691 | 145.00 | -13.69 |
CAediting_816321 | chr11_60394691_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-646 | 60394686 | 60394692 | 7mer-m8 | 60394674 | 60394693 | 148.00 | -21.85 |
CAediting_816322 | chr11_60394698_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3943 | 60394695 | 60394701 | 7mer-m8 | 60394682 | 60394702 | 146.00 | -22.74 |
CAediting_816323 | chr11_60394704_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-1913 | 60394702 | 60394709 | 8mer-1a | 60394688 | 60394709 | 147.00 | -22.44 |
CAediting_816323 | chr11_60394704_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6849-3p | 60394697 | 60394703 | 7mer-m8 | 60394683 | 60394704 | 140.00 | -16.75 |
CAediting_816325 | chr11_60394723_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4437 | 60394719 | 60394725 | 7mer-m8 | 60394706 | 60394726 | 146.00 | -19.54 |
CAediting_816326 | chr11_60394730_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-5587-3p | 60394723 | 60394730 | 8mer-1a | 60394709 | 60394730 | 154.00 | -25.31 |
CAediting_816326 | chr11_60394730_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6763-3p | 60394724 | 60394730 | 7mer-m8 | 60394711 | 60394731 | 144.00 | -21.65 |
CAediting_816326 | chr11_60394730_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6887-3p | 60394728 | 60394735 | 8mer-1a | 60394715 | 60394735 | 142.00 | -18.90 |
CAediting_816327 | chr11_60394731_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6887-3p | 60394727 | 60394733 | 7mer-m8 | 60394714 | 60394734 | 140.00 | -18.17 |
CAediting_816304 | chr11_60394404_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6761-5p | 60394397 | 60394403 | 7mer-m8 | 60394384 | 60394404 | 140.00 | -15.38 |
CAediting_816304 | chr11_60394404_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6761-5p | 60394397 | 60394403 | 7mer-m8 | 60394384 | 60394404 | 140.00 | -15.38 |
CAediting_816317 | chr11_60394615_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3190-5p | 60394608 | 60394614 | 7mer-m8 | 60394596 | 60394615 | 154.00 | -19.64 |
CAediting_816328 | chr11_60394747_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-324-3p | 60394740 | 60394746 | 7mer-m8 | 60394725 | 60394747 | 141.00 | -23.55 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_816313 | chr11_60394545_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-10399-5p | 60394540 | 60394546 | 7mer-m8 | 60394526 | 60394547 | 148 | -11.2 |
CAediting_816322 | chr11_60394698_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-150-5p | 60394692 | 60394698 | 7mer-m8 | 60394676 | 60394699 | 142 | -15.45 |
CAediting_816326 | chr11_60394730_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3127-3p | 60394728 | 60394735 | 8mer-1a | 60394715 | 60394735 | 144 | -19.48 |
CAediting_816327 | chr11_60394731_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3127-3p | 60394728 | 60394735 | 8mer-1a | 60394715 | 60394735 | 144 | -19.48 |
CAediting_816315 | chr11_60394602_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3663-5p | 60394599 | 60394605 | 7mer-m8 | 60394587 | 60394606 | 144 | -20.26 |
CAediting_816311 | chr11_60394464_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-3678-3p | 60394457 | 60394464 | 8mer-1a | 60394442 | 60394464 | 154 | -14.96 |
CAediting_816314 | chr11_60394591_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-378a-5p | 60394587 | 60394593 | 7mer-m8 | 60394573 | 60394594 | 155 | -24.38 |
CAediting_816316 | chr11_60394614_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4435 | 60394607 | 60394614 | 8mer-1a | 60394593 | 60394614 | 149 | -18.63 |
CAediting_816316 | chr11_60394614_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4435 | 60394607 | 60394614 | 8mer-1a | 60394593 | 60394614 | 149 | -18.63 |
CAediting_816330 | chr11_60394788_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4677-5p | 60394783 | 60394790 | 8mer-1a | 60394768 | 60394790 | 145 | -13.39 |
CAediting_816331 | chr11_60394790_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4677-5p | 60394783 | 60394790 | 8mer-1a | 60394768 | 60394790 | 145 | -13.39 |
CAediting_816318 | chr11_60394652_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4735-5p | 60394649 | 60394655 | 7mer-m8 | 60394635 | 60394656 | 140 | -4.28 |
CAediting_816319 | chr11_60394659_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4794 | 60394653 | 60394659 | 7mer-m8 | 60394639 | 60394660 | 140 | -12.3 |
CAediting_816321 | chr11_60394691_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-562 | 60394687 | 60394693 | 7mer-m8 | 60394675 | 60394694 | 154 | -13.51 |
CAediting_816321 | chr11_60394691_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-5697 | 60394688 | 60394694 | 7mer-m8 | 60394674 | 60394695 | 146 | -16.89 |
CAediting_816328 | chr11_60394747_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-572 | 60394745 | 60394751 | 7mer-m8 | 60394734 | 60394752 | 152 | -21.12 |
CAediting_816330 | chr11_60394788_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-578 | 60394781 | 60394787 | 7mer-m8 | 60394768 | 60394788 | 150 | -13.89 |
CAediting_816315 | chr11_60394602_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6131 | 60394600 | 60394606 | 7mer-m8 | 60394589 | 60394607 | 140 | -16.72 |
CAediting_816313 | chr11_60394545_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6504-3p | 60394540 | 60394546 | 7mer-m8 | 60394526 | 60394547 | 153 | -14.35 |
CAediting_816319 | chr11_60394659_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-664a-5p | 60394653 | 60394659 | 7mer-m8 | 60394637 | 60394660 | 141 | -13.4 |
CAediting_816326 | chr11_60394730_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6734-3p | 60394726 | 60394732 | 7mer-m8 | 60394711 | 60394733 | 140 | -16.59 |
CAediting_816327 | chr11_60394731_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6734-3p | 60394726 | 60394732 | 7mer-m8 | 60394711 | 60394733 | 140 | -16.59 |
CAediting_816330 | chr11_60394788_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6739-3p | 60394784 | 60394791 | 8mer-1a | 60394770 | 60394791 | 141 | -7.65 |
CAediting_816331 | chr11_60394790_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6739-3p | 60394784 | 60394791 | 8mer-1a | 60394770 | 60394791 | 141 | -7.65 |
CAediting_816326 | chr11_60394730_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6756-3p | 60394728 | 60394735 | 8mer-1a | 60394716 | 60394735 | 146 | -19.06 |
CAediting_816327 | chr11_60394731_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6756-3p | 60394728 | 60394735 | 8mer-1a | 60394716 | 60394735 | 146 | -19.06 |
CAediting_816322 | chr11_60394698_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6778-3p | 60394694 | 60394700 | 7mer-m8 | 60394681 | 60394701 | 140 | -14.56 |
CAediting_816315 | chr11_60394602_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6843-3p | 60394598 | 60394604 | 7mer-m8 | 60394586 | 60394605 | 152 | -20.48 |
CAediting_816298 | chr11_60394368_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6844 | 60394366 | 60394371 | 6mer | 60394353 | 60394372 | 141 | -14.25 |
CAediting_816295 | chr11_60394344_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6847-3p | 60394342 | 60394348 | 7mer-m8 | 60394328 | 60394349 | 140 | -18.48 |
CAediting_816296 | chr11_60394347_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6847-3p | 60394342 | 60394348 | 7mer-m8 | 60394328 | 60394349 | 140 | -18.48 |
CAediting_816315 | chr11_60394602_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6848-3p | 60394598 | 60394604 | 7mer-m8 | 60394588 | 60394605 | 142 | -15.32 |
CAediting_816304 | chr11_60394404_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6867-5p | 60394403 | 60394409 | 7mer-1a | 60394387 | 60394411 | 140 | -19.86 |
CAediting_816305 | chr11_60394408_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-6867-5p | 60394403 | 60394409 | 7mer-1a | 60394387 | 60394411 | 140 | -19.86 |
CAediting_816294 | chr11_60394323_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-7161-3p | 60394322 | 60394328 | 7mer-1a | 60394301 | 60394328 | 154 | -29.39 |
CAediting_816295 | chr11_60394344_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-8060 | 60394340 | 60394346 | 7mer-1a | 60394323 | 60394346 | 146 | -16.37 |
CAediting_816311 | chr11_60394464_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-3678-3p | 60394457 | 60394464 | 8mer-1a | 60394442 | 60394464 | 154 | -14.96 |
CAediting_816298 | chr11_60394368_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6844 | 60394366 | 60394371 | 6mer | 60394353 | 60394372 | 141 | -14.25 |
CAediting_816295 | chr11_60394344_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6847-3p | 60394342 | 60394348 | 7mer-m8 | 60394328 | 60394349 | 140 | -18.48 |
CAediting_816296 | chr11_60394347_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6847-3p | 60394342 | 60394348 | 7mer-m8 | 60394328 | 60394349 | 140 | -18.48 |
CAediting_816304 | chr11_60394404_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6867-5p | 60394403 | 60394409 | 7mer-1a | 60394387 | 60394411 | 140 | -19.86 |
CAediting_816305 | chr11_60394408_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-6867-5p | 60394403 | 60394409 | 7mer-1a | 60394387 | 60394411 | 140 | -19.86 |
CAediting_816294 | chr11_60394323_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-7161-3p | 60394322 | 60394328 | 7mer-1a | 60394301 | 60394328 | 154 | -29.39 |
CAediting_816295 | chr11_60394344_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-8060 | 60394340 | 60394346 | 7mer-1a | 60394323 | 60394346 | 146 | -16.37 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000166927.11 | ENST00000358246 | hsa-miR-624-3p | 60394624 | 60394630 | 7mer-m8 | 60394612 | 60394631 | 147 | -15.34 |
CAediting_688080 | chr9_63819626_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-4477b | 60394035 | 60394042 | 8mer-1a | 60394021 | 60394042 | 152 | -9.91 |
CAediting_688080 | chr9_63819626_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-4477b | 60394035 | 60394042 | 8mer-1a | 60394021 | 60394042 | 152 | -9.91 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-548aa | 60395469 | 60395476 | 8mer-1a | 60395451 | 60395476 | 143 | -8.14 |
CAediting_228905 | chr2_188297554_+ | ENSG00000166927.11 | ENST00000358246 | hsa-miR-561-3p | 60394254 | 60394261 | 8mer-1a | 60394236 | 60394261 | 154 | -12.56 |
CAediting_228905 | chr2_188297554_+ | ENSG00000166927.11 | ENST00000534016 | hsa-miR-561-3p | 60394254 | 60394261 | 8mer-1a | 60394236 | 60394261 | 154 | -12.56 |
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The effects of the RNA editing to the stability of the RNA structures for MS4A7 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for MS4A7 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_816228 | chr11_60387662_+ | 0.00165435098956934 | 0.309193737021557 | . | . | . | . |
BRCA | CAediting_816261 | chr11_60387827_+ | 0.000768526866475521 | 0.366373719265717 | . | . | . | . |
BRCA | CAediting_816265 | chr11_60388912_+ | 1.99588188965885e-06 | 0.364522931731586 | . | . | . | . |
BRCA | CAediting_816279 | chr11_60389046_+ | . | . | . | . | 0.0313313734000262 | 0.204488782764095 |
BRCA | CAediting_816281 | chr11_60389060_+ | 0.000115965935427211 | 0.281092503997677 | . | . | . | . |
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Relation with cancer stages for MS4A7 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_816265 | chr11_60388912_+ | 0.0148307801749563 | 0.194150161302929 |
BRCA | pathologic_stage | CAediting_816281 | chr11_60389060_+ | 0.00705699682365305 | 0.201845635279292 |
KIRC | pathologic_stage | CAediting_816228 | chr11_60387662_+ | 0.0180290234122961 | 0.278065998022597 |
KIRC | pathologic_stage | CAediting_816242 | chr11_60387729_+ | 0.00119231376316489 | 0.402224205516184 |
KIRC | pathologic_stage | CAediting_816281 | chr11_60389060_+ | 0.0103573260450008 | 0.211581441464879 |
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Relation with survival for MS4A7 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
KIRC | CAediting_816228 | chr11_60387662_+ | 0.0486094956713583 | 0.0110032 | 50.3531 |
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RelatedDrugs for MS4A7 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MS4A7 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |