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Editing gene: STRIP2 (CAeditome ID:57464)

Gene summary for STRIP2

Gene summary

Gene information	Gene symbol	STRIP2
	Gene ID	57464
	Gene name	striatin interacting protein 2
	Synonyms	FAM40B\|FAR11B
	Cytomap	7q32.1
	Type of gene	protein-coding
	Description	striatin-interacting protein 2FAR11 factor arrest 11 homolog Bfamily with sequence similarity 40, member Bhomolog of yeast FAR11 protein 2protein FAM40B
	Modification date	20210518
	UniProtAcc	Q9ULQ0
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
STRIP2	GO:0005737	Striatin-interacting protein 2	21834987
STRIP2	GO:0005829	Striatin-interacting protein 2	0000052

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RNA A-to-I events for STRIP2

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000128578.8

RNA A-to-I editing events in Cancer.

CAediting_601245(129437357, +), CAediting_601246(129437423, +), CAediting_601247(129441589, +), CAediting_601248(129441638, +), CAediting_601249(129441661, +), CAediting_601250(129441802, +), CAediting_601251(129441878, +), CAediting_601252(129442127, +), CAediting_601253(129442145, +), CAediting_601254(129487058, +), CAediting_601255(129487070, +), CAediting_601256(129487075, +), CAediting_601257(129487143, +), CAediting_601258(129487150, +), CAediting_601259(129487153, +), CAediting_601260(129487198, +), CAediting_601261(129487201, +), CAediting_601262(129487204, +), CAediting_601263(129487237, +), CAediting_601264(129487249, +), CAediting_601265(129487268, +), CAediting_601266(129487275, +), CAediting_601267(129487289, +), CAediting_601268(129487291, +), CAediting_601269(129487298, +), CAediting_601270(129487311, +), CAediting_601271(129488107, +), CAediting_601272(129488111, +), CAediting_601273(129488121, +), CAediting_601274(129488131, +), CAediting_601275(129488145, +), CAediting_601276(129488146, +), CAediting_601277(129488148, +), CAediting_601278(129488149, +), CAediting_601279(129488151, +), CAediting_601280(129488152, +), CAediting_601281(129488155, +), CAediting_601282(129488156, +), CAediting_601283(129488157, +), CAediting_601284(129488177, +), CAediting_601285(129488181, +),

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RNA editing positional annotations for STRIP2 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_601245	chr7_129437357_+	intronic
CAediting_601246	chr7_129437423_+	intronic
CAediting_601247	chr7_129441589_+	intronic
CAediting_601248	chr7_129441638_+	intronic
CAediting_601249	chr7_129441661_+	intronic
CAediting_601250	chr7_129441802_+	intronic
CAediting_601251	chr7_129441878_+	intronic
CAediting_601252	chr7_129442127_+	intronic
CAediting_601253	chr7_129442145_+	intronic
CAediting_601254	chr7_129487058_+	UTR3
CAediting_601255	chr7_129487070_+	UTR3
CAediting_601256	chr7_129487075_+	UTR3
CAediting_601257	chr7_129487143_+	UTR3
CAediting_601258	chr7_129487150_+	UTR3
CAediting_601259	chr7_129487153_+	UTR3
CAediting_601260	chr7_129487198_+	UTR3
CAediting_601261	chr7_129487201_+	UTR3
CAediting_601262	chr7_129487204_+	UTR3
CAediting_601263	chr7_129487237_+	UTR3
CAediting_601264	chr7_129487249_+	UTR3
CAediting_601265	chr7_129487268_+	UTR3
CAediting_601266	chr7_129487275_+	UTR3
CAediting_601267	chr7_129487289_+	UTR3
CAediting_601268	chr7_129487291_+	UTR3
CAediting_601269	chr7_129487298_+	UTR3
CAediting_601270	chr7_129487311_+	UTR3
CAediting_601271	chr7_129488107_+	UTR3
CAediting_601272	chr7_129488111_+	UTR3
CAediting_601273	chr7_129488121_+	UTR3
CAediting_601274	chr7_129488131_+	UTR3
CAediting_601275	chr7_129488145_+	UTR3
CAediting_601276	chr7_129488146_+	UTR3
CAediting_601277	chr7_129488148_+	UTR3
CAediting_601278	chr7_129488149_+	UTR3
CAediting_601279	chr7_129488151_+	UTR3
CAediting_601280	chr7_129488152_+	UTR3
CAediting_601281	chr7_129488155_+	UTR3
CAediting_601282	chr7_129488156_+	UTR3
CAediting_601283	chr7_129488157_+	UTR3
CAediting_601284	chr7_129488177_+	UTR3
CAediting_601285	chr7_129488181_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_601245	chr7_129437357_+	SINE	Alu	AluJr
CAediting_601246	chr7_129437423_+	SINE	Alu	AluJr
CAediting_601247	chr7_129441589_+	SINE	Alu	AluJb
CAediting_601248	chr7_129441638_+	SINE	Alu	AluJb
CAediting_601249	chr7_129441661_+	SINE	Alu	AluJb
CAediting_601250	chr7_129441802_+	SINE	Alu	AluJb
CAediting_601251	chr7_129441878_+	SINE	Alu	AluJb
CAediting_601252	chr7_129442127_+	SINE	Alu	AluSx
CAediting_601253	chr7_129442145_+	SINE	Alu	AluSx
CAediting_601254	chr7_129487058_+	SINE	Alu	AluSq2
CAediting_601255	chr7_129487070_+	SINE	Alu	AluSq2
CAediting_601256	chr7_129487075_+	SINE	Alu	AluSq2
CAediting_601257	chr7_129487143_+	SINE	Alu	AluSq2
CAediting_601258	chr7_129487150_+	SINE	Alu	AluSq2
CAediting_601259	chr7_129487153_+	SINE	Alu	AluSq2
CAediting_601260	chr7_129487198_+	SINE	Alu	AluSq2
CAediting_601261	chr7_129487201_+	SINE	Alu	AluSq2
CAediting_601262	chr7_129487204_+	SINE	Alu	AluSq2
CAediting_601263	chr7_129487237_+	SINE	Alu	AluSq2
CAediting_601264	chr7_129487249_+	SINE	Alu	AluSq2
CAediting_601265	chr7_129487268_+	SINE	Alu	AluSq2
CAediting_601266	chr7_129487275_+	SINE	Alu	AluSq2
CAediting_601267	chr7_129487289_+	SINE	Alu	AluSq2
CAediting_601268	chr7_129487291_+	SINE	Alu	AluSq2
CAediting_601269	chr7_129487298_+	SINE	Alu	AluSq2
CAediting_601270	chr7_129487311_+	SINE	Alu	AluSq2
CAediting_601271	chr7_129488107_+	SINE	Alu	AluSq
CAediting_601272	chr7_129488111_+	SINE	Alu	AluSq
CAediting_601273	chr7_129488121_+	SINE	Alu	AluSq
CAediting_601274	chr7_129488131_+	SINE	Alu	AluSq
CAediting_601275	chr7_129488145_+	SINE	Alu	AluSq
CAediting_601276	chr7_129488146_+	SINE	Alu	AluSq
CAediting_601277	chr7_129488148_+	SINE	Alu	AluSq
CAediting_601278	chr7_129488149_+	SINE	Alu	AluSq
CAediting_601279	chr7_129488151_+	SINE	Alu	AluSq
CAediting_601280	chr7_129488152_+	SINE	Alu	AluSq
CAediting_601281	chr7_129488155_+	SINE	Alu	AluSq
CAediting_601282	chr7_129488156_+	SINE	Alu	AluSq
CAediting_601283	chr7_129488157_+	SINE	Alu	AluSq
CAediting_601284	chr7_129488177_+	SINE	Alu	AluSq

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RNA A-to-I editing events in the alternative splicing sites for STRIP2

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000128578.8.STRIP2.

Correlation between RNA A-to-I editing and PSI for ENSG00000128578.8.STRIP2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for STRIP2

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LGG.CAediting_601277.ENSG00000128578.STRIP2.png
Soverview

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Protein coding region RNA A-to-I editings for STRIP2

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for STRIP2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_601273	chr7_129488121_+	ENSG00000128578.8	ENST00000249344	hsa-miR-564	129488119	129488125	7mer-1a	129488107	129488125	143.00	-19.46
CAediting_601277	chr7_129488148_+	ENSG00000128578.8	ENST00000249344	hsa-miR-2117	129488147	129488152	6mer	129488133	129488153	150.00	-24.31
CAediting_601278	chr7_129488149_+	ENSG00000128578.8	ENST00000249344	hsa-miR-367-5p	129488142	129488148	7mer-m8	129488127	129488149	148.00	-13.32
CAediting_601278	chr7_129488149_+	ENSG00000128578.8	ENST00000249344	hsa-miR-7152-5p	129488145	129488151	7mer-m8	129488131	129488152	150.00	-14.04
CAediting_601280	chr7_129488152_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6812-3p	129488147	129488154	8mer-1a	129488134	129488154	140.00	-18.10
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3187-5p	129487051	129487057	7mer-m8	129487037	129487058	159.00	-29.61
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-5189-5p	129487051	129487057	7mer-m8	129487033	129487058	150.00	-22.93
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-612	129487051	129487057	7mer-m8	129487033	129487058	149.00	-22.25
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-661	129487053	129487059	7mer-m8	129487037	129487060	143.00	-21.35
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6849-3p	129487056	129487063	8mer-1a	129487043	129487063	150.00	-17.05
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6860	129487051	129487057	7mer-m8	129487039	129487058	145.00	-20.24
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-939-3p	129487052	129487058	7mer-m8	129487039	129487059	140.00	-15.63
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-324-3p	129487066	129487072	7mer-m8	129487049	129487073	150.00	-21.96
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4252	129487067	129487074	8mer-1a	129487054	129487074	149.00	-22.65
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4793-3p	129487063	129487069	7mer-m8	129487048	129487070	153.00	-19.63
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6807-3p	129487065	129487070	6mer	129487049	129487071	168.00	-34.05
CAediting_601257	chr7_129487143_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6769a-3p	129487139	129487145	7mer-m8	129487126	129487146	140.00	-17.35
CAediting_601261	chr7_129487201_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4421	129487199	129487205	7mer-m8	129487185	129487206	154.00	-16.19
CAediting_601261	chr7_129487201_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4684-5p	129487195	129487201	7mer-m8	129487180	129487202	159.00	-15.66
CAediting_601261	chr7_129487201_+	ENSG00000128578.8	ENST00000249344	hsa-miR-5699-3p	129487199	129487205	7mer-m8	129487185	129487206	153.00	-17.34
CAediting_601261	chr7_129487201_+	ENSG00000128578.8	ENST00000249344	hsa-miR-593-3p	129487197	129487203	7mer-1a	129487185	129487203	140.00	-19.02
CAediting_601261	chr7_129487201_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6818-3p	129487197	129487203	7mer-m8	129487183	129487204	140.00	-12.56
CAediting_601263	chr7_129487237_+	ENSG00000128578.8	ENST00000249344	hsa-miR-28-5p	129487235	129487241	7mer-m8	129487221	129487242	143.00	-17.69
CAediting_601263	chr7_129487237_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3139	129487235	129487241	7mer-m8	129487220	129487242	149.00	-21.86
CAediting_601263	chr7_129487237_+	ENSG00000128578.8	ENST00000249344	hsa-miR-708-5p	129487235	129487241	7mer-m8	129487216	129487242	155.00	-21.37
CAediting_601265	chr7_129487268_+	ENSG00000128578.8	ENST00000249344	hsa-miR-658	129487262	129487268	7mer-m8	129487245	129487269	155.00	-27.69
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-1247-3p	129487270	129487276	7mer-m8	129487255	129487277	159.00	-29.27
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-5587-3p	129487271	129487277	7mer-m8	129487259	129487278	150.00	-24.20
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6746-5p	129487269	129487274	6mer	129487254	129487275	143.00	-38.33
CAediting_601268	chr7_129487291_+	ENSG00000128578.8	ENST00000249344	hsa-miR-100-5p	129487287	129487293	7mer-m8	129487271	129487294	155.00	-23.44
CAediting_601268	chr7_129487291_+	ENSG00000128578.8	ENST00000249344	hsa-miR-99a-5p	129487287	129487293	7mer-m8	129487271	129487294	159.00	-25.34
CAediting_601268	chr7_129487291_+	ENSG00000128578.8	ENST00000249344	hsa-miR-99b-5p	129487287	129487293	7mer-m8	129487271	129487294	159.00	-30.96
CAediting_601269	chr7_129487298_+	ENSG00000128578.8	ENST00000249344	hsa-miR-663b	129487296	129487302	7mer-m8	129487282	129487303	147.00	-27.49
CAediting_601272	chr7_129488111_+	ENSG00000128578.8	ENST00000249344	hsa-miR-324-3p	129488104	129488110	7mer-m8	129488087	129488111	148.00	-29.54
CAediting_601272	chr7_129488111_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6075	129488108	129488115	8mer-1a	129488094	129488115	145.00	-22.96
CAediting_601282	chr7_129488156_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4294	129488154	129488160	7mer-m8	129488145	129488161	140.00	-13.07
CAediting_601285	chr7_129488181_+	ENSG00000128578.8	ENST00000249344	hsa-miR-5088-3p	129488174	129488180	7mer-m8	129488161	129488181	145.00	-15.21
CAediting_601275	chr7_129488145_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3655	129488143	129488150	8mer-1a	129488131	129488150	153.00	-19.86

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_601262	chr7_129487204_+	ENSG00000128578.8	ENST00000249344	hsa-miR-10a-5p	129487201	129487207	7mer-m8	129487186	129487208	145	-12.2
CAediting_601262	chr7_129487204_+	ENSG00000128578.8	ENST00000249344	hsa-miR-10b-5p	129487201	129487207	7mer-m8	129487186	129487208	140	-12.2
CAediting_601284	chr7_129488177_+	ENSG00000128578.8	ENST00000249344	hsa-miR-1248	129488173	129488180	8mer-1a	129488152	129488180	146	-12.58
CAediting_601270	chr7_129487311_+	ENSG00000128578.8	ENST00000249344	hsa-miR-1285-3p	129487305	129487311	7mer-m8	129487291	129487312	140	-16.54
CAediting_601270	chr7_129487311_+	ENSG00000128578.8	ENST00000249344	hsa-miR-1285-3p	129487305	129487311	7mer-m8	129487291	129487312	140	-16.54
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-25-3p	129487064	129487070	7mer-m8	129487049	129487071	154	-18.76
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-32-5p	129487064	129487070	7mer-m8	129487049	129487071	145	-12.44
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3620-3p	129487273	129487279	7mer-m8	129487259	129487280	140	-13.16
CAediting_601264	chr7_129487249_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3622a-3p	129487246	129487253	8mer-1a	129487232	129487253	144	-13.56
CAediting_601264	chr7_129487249_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3622b-3p	129487246	129487253	8mer-1a	129487233	129487253	153	-19.33
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-363-3p	129487064	129487070	7mer-m8	129487054	129487071	146	-12.63
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3689a-3p	129487268	129487274	7mer-m8	129487255	129487275	151	-29.38
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3689b-3p	129487268	129487274	7mer-m8	129487255	129487275	151	-28.14
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3689c	129487268	129487274	7mer-m8	129487255	129487275	151	-28.14
CAediting_601265	chr7_129487268_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3689d	129487266	129487272	7mer-m8	129487253	129487273	141	-17.89
CAediting_601265	chr7_129487268_+	ENSG00000128578.8	ENST00000249344	hsa-miR-3689d	129487266	129487272	7mer-m8	129487253	129487273	141	-17.89
CAediting_601257	chr7_129487143_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4267	129487141	129487147	7mer-m8	129487133	129487148	149	-19.69
CAediting_601269	chr7_129487298_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4284	129487294	129487301	8mer-1a	129487284	129487301	151	-19.56
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4292	129487271	129487277	7mer-m8	129487261	129487278	140	-19.56
CAediting_601265	chr7_129487268_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4443	129487261	129487267	7mer-m8	129487251	129487268	150	-21.85
CAediting_601257	chr7_129487143_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4448	129487138	129487144	7mer-m8	129487126	129487145	150	-23.08
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4453	129487054	129487060	7mer-m8	129487042	129487061	150	-15.12
CAediting_601270	chr7_129487311_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4505	129487307	129487313	7mer-m8	129487296	129487314	151	-27.22
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4538	129487054	129487060	7mer-m8	129487040	129487061	151	-16.99
CAediting_601271	chr7_129488107_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4772-3p	129488101	129488107	7mer-m8	129488086	129488108	151	-13.75
CAediting_601270	chr7_129487311_+	ENSG00000128578.8	ENST00000249344	hsa-miR-5189-5p	129487305	129487311	7mer-m8	129487291	129487312	150	-20.57
CAediting_601270	chr7_129487311_+	ENSG00000128578.8	ENST00000249344	hsa-miR-5787	129487307	129487313	7mer-m8	129487296	129487314	146	-24.42
CAediting_601285	chr7_129488181_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6083	129488179	129488185	7mer-m8	129488167	129488186	140	-7.17
CAediting_601270	chr7_129487311_+	ENSG00000128578.8	ENST00000249344	hsa-miR-612	129487305	129487311	7mer-m8	129487289	129487312	153	-26.97
CAediting_601265	chr7_129487268_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6134	129487265	129487271	7mer-m8	129487255	129487272	146	-18.25
CAediting_601254	chr7_129487058_+	ENSG00000128578.8	ENST00000249344	hsa-miR-635	129487052	129487058	7mer-m8	129487037	129487059	151	-18.79
CAediting_601262	chr7_129487204_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6732-3p	129487202	129487208	7mer-m8	129487188	129487209	150	-14.93
CAediting_601257	chr7_129487143_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6736-3p	129487140	129487146	7mer-m8	129487127	129487147	145	-16.09
CAediting_601266	chr7_129487275_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6779-5p	129487268	129487274	7mer-m8	129487255	129487275	146	-29.83
CAediting_601265	chr7_129487268_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6851-5p	129487266	129487272	7mer-m8	129487252	129487273	147	-23.79
CAediting_601270	chr7_129487311_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6860	129487305	129487311	7mer-m8	129487292	129487312	148	-20.42
CAediting_601265	chr7_129487268_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6880-5p	129487263	129487269	7mer-m8	129487249	129487270	148	-25.87
CAediting_601270	chr7_129487311_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6884-5p	129487309	129487315	7mer-m8	129487294	129487316	155	-21.4
CAediting_601264	chr7_129487249_+	ENSG00000128578.8	ENST00000249344	hsa-miR-7162-3p	129487243	129487249	7mer-m8	129487230	129487250	142	-17.47
CAediting_601275	chr7_129488145_+	ENSG00000128578.8	ENST00000249344	hsa-miR-744-3p	129488141	129488148	8mer-1a	129488127	129488148	140	-10.2
CAediting_601276	chr7_129488146_+	ENSG00000128578.8	ENST00000249344	hsa-miR-744-3p	129488141	129488148	8mer-1a	129488127	129488148	140	-10.2
CAediting_601277	chr7_129488148_+	ENSG00000128578.8	ENST00000249344	hsa-miR-744-3p	129488141	129488148	8mer-1a	129488127	129488148	140	-10.2
CAediting_601265	chr7_129487268_+	ENSG00000128578.8	ENST00000249344	hsa-miR-7847-3p	129487262	129487268	7mer-m8	129487251	129487269	154	-23.54
CAediting_601258	chr7_129487150_+	ENSG00000128578.8	ENST00000249344	hsa-miR-7977	129487143	129487149	7mer-m8	129487133	129487150	140	-13.24
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-92a-3p	129487064	129487070	7mer-m8	129487054	129487071	147	-19.71
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-92a-3p	129487064	129487070	7mer-m8	129487054	129487071	147	-19.71
CAediting_601255	chr7_129487070_+	ENSG00000128578.8	ENST00000249344	hsa-miR-92b-3p	129487064	129487070	7mer-m8	129487050	129487071	150	-18.96

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000128578.8	ENST00000249344	hsa-miR-624-3p	129485891	129485897	7mer-m8	129485880	129485898	148	-15.44
CAediting_77128	chr1_85133844_+	ENSG00000128578.8	ENST00000249344	hsa-miR-4423-3p	129486015	129486021	7mer-m8	129486002	129486022	152	-18.13
CAediting_442554	chr5_154685830_+	ENSG00000128578.8	ENST00000249344	hsa-miR-1303	129488240	129488246	7mer-m8	129488226	129488247	152	-20.32
CAediting_580943	chr7_100356700_+	ENSG00000128578.8	ENST00000249344	hsa-miR-6840-3p	129487102	129487108	7mer-m8	129487093	129487109	141	-27.37
CAediting_524911	chr7_5495852_-	ENSG00000128578.8	ENST00000249344	hsa-miR-589-3p	129485881	129485887	7mer-m8	129485865	129485888	142	-13.85
CAediting_524911	chr7_5495852_-	ENSG00000128578.8	ENST00000249344	hsa-miR-589-3p	129486505	129486511	7mer-m8	129486492	129486512	148	-21.55
CAediting_442554	chr5_154685830_+	ENSG00000128578.8	ENST00000435494	hsa-miR-1303	129483325	129483332	8mer-1a	129483310	129483332	148	-15.21

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000128578.8	ENST00000249344	hsa-miR-1303	129486554	129486560	7mer-m8	129486542	129486561	149	-16.2
CAediting_396018	chr5_1062918_-	ENSG00000128578.8	ENST00000249344	hsa-miR-4635	129487315	129487321	7mer-m8	129487302	129487322	140	-10.15

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for STRIP2

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000249344.5	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_601254	ENST00000249344.5	chr7_129487058_+	-1664.10	-1657.50	-1701.10
CAediting_601255	ENST00000249344.5	chr7_129487070_+	-1663.70	-1657.50	-1701.10
CAediting_601256	ENST00000249344.5	chr7_129487075_+	-1657.50	-1657.50	-1701.10
CAediting_601257	ENST00000249344.5	chr7_129487143_+	-1663.90	-1657.50	-1701.10
CAediting_601258	ENST00000249344.5	chr7_129487150_+	-1659.20	-1657.50	-1701.10
CAediting_601259	ENST00000249344.5	chr7_129487153_+	-1660.70	-1657.50	-1701.10
CAediting_601260	ENST00000249344.5	chr7_129487198_+	-1658.80	-1657.50	-1701.10
CAediting_601261	ENST00000249344.5	chr7_129487201_+	-1657.60	-1657.50	-1701.10
CAediting_601262	ENST00000249344.5	chr7_129487204_+	-1657.40	-1657.50	-1701.10
CAediting_601263	ENST00000249344.5	chr7_129487237_+	-1657.50	-1657.50	-1701.10
CAediting_601264	ENST00000249344.5	chr7_129487249_+	-1660.00	-1657.50	-1701.10
CAediting_601265	ENST00000249344.5	chr7_129487268_+	-1657.50	-1657.50	-1701.10
CAediting_601266	ENST00000249344.5	chr7_129487275_+	-1660.90	-1657.50	-1701.10
CAediting_601267	ENST00000249344.5	chr7_129487289_+	-1657.50	-1657.50	-1701.10
CAediting_601268	ENST00000249344.5	chr7_129487291_+	-1657.60	-1657.50	-1701.10
CAediting_601269	ENST00000249344.5	chr7_129487298_+	-1660.10	-1657.50	-1701.10
CAediting_601270	ENST00000249344.5	chr7_129487311_+	-1656.80	-1657.50	-1701.10
CAediting_601271	ENST00000249344.5	chr7_129488107_+	-1656.80	-1657.50	-1701.10
CAediting_601272	ENST00000249344.5	chr7_129488111_+	-1656.60	-1657.50	-1701.10
CAediting_601273	ENST00000249344.5	chr7_129488121_+	-1663.30	-1657.50	-1701.10
CAediting_601274	ENST00000249344.5	chr7_129488131_+	-1657.10	-1657.50	-1701.10
CAediting_601275	ENST00000249344.5	chr7_129488145_+	-1657.20	-1657.50	-1701.10
CAediting_601276	ENST00000249344.5	chr7_129488146_+	-1657.50	-1657.50	-1701.10
CAediting_601277	ENST00000249344.5	chr7_129488148_+	-1657.20	-1657.50	-1701.10
CAediting_601278	ENST00000249344.5	chr7_129488149_+	-1657.20	-1657.50	-1701.10
CAediting_601279	ENST00000249344.5	chr7_129488151_+	-1656.60	-1657.50	-1701.10
CAediting_601280	ENST00000249344.5	chr7_129488152_+	-1664.20	-1657.50	-1701.10
CAediting_601281	ENST00000249344.5	chr7_129488155_+	-1657.00	-1657.50	-1701.10
CAediting_601282	ENST00000249344.5	chr7_129488156_+	-1657.60	-1657.50	-1701.10
CAediting_601283	ENST00000249344.5	chr7_129488157_+	-1657.50	-1657.50	-1701.10
CAediting_601284	ENST00000249344.5	chr7_129488177_+	-1657.80	-1657.50	-1701.10
CAediting_601285	ENST00000249344.5	chr7_129488181_+	-1657.10	-1657.50	-1701.10

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Relation with ADAR for STRIP2

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_601273	chr7_129488121_+	0.000572228114575326	0.321832408803168	.	.	.	.
STAD	CAediting_601277	chr7_129488148_+	0.0220560206804439	0.288062388633221	.	.	.	.
CESC	CAediting_601278	chr7_129488149_+	0.0109735540937665	0.340476789167638	.	.	.	.
HNSC	CAediting_601278	chr7_129488149_+	0.00297513135805635	0.330027706513454	.	.	.	.
STAD	CAediting_601278	chr7_129488149_+	0.000658171885248645	0.356230861085747	.	.	.	.
STAD	CAediting_601280	chr7_129488152_+	0.0109856411741038	0.331642747968176	.	.	.	.

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Relation with cancer stages for STRIP2

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for STRIP2

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
KIRC	CAediting_601278	chr7_129488149_+	0.00515681963706227	0.0209913	0.0138706

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RelatedDrugs for STRIP2

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for STRIP2

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene