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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SMARCAD1 (CAeditome ID:56916) |
Gene summary for SMARCAD1 |
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Gene information | Gene symbol | SMARCAD1 | Gene ID | 56916 |
Gene name | SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 | |
Synonyms | ADERM|BASNS|ETL1|HEL1|HRZ | |
Cytomap | 4q22.3 | |
Type of gene | protein-coding | |
Description | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1ATP-dependent helicase 1 | |
Modification date | 20210518 | |
UniProtAcc | Q9H4L7 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
SMARCAD1 | GO:0003677 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 | 18675275 |
SMARCAD1 | GO:0005654 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 | 0000052 |
SMARCAD1 | GO:0035861 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 | 22960744 |
SMARCAD1 | GO:0043596 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 | 21549307 |
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RNA A-to-I events for SMARCAD1 |
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CAediting_376524(94210716, +), CAediting_376525(94210747, +), CAediting_376526(94210752, +), CAediting_376527(94210757, +), CAediting_376528(94210772, +), CAediting_376529(94210813, +), CAediting_376530(94210814, +), CAediting_376531(94210827, +), CAediting_376532(94210854, +), CAediting_376533(94211071, +), CAediting_376534(94211108, +), CAediting_376535(94211112, +), CAediting_376536(94211115, +), CAediting_376537(94212761, +), CAediting_376538(94214391, +), CAediting_376539(94226966, +), CAediting_376540(94231988, +), CAediting_376541(94231991, +), CAediting_376542(94232106, +), CAediting_376543(94232123, +), CAediting_376544(94232689, +), CAediting_376545(94232849, +), CAediting_376546(94232930, +), CAediting_376547(94238562, +), CAediting_376548(94242635, +), CAediting_376549(94242702, +), CAediting_376550(94242770, +), CAediting_376551(94242784, +), CAediting_376552(94242786, +), CAediting_376553(94242841, +), CAediting_376554(94243037, +), CAediting_376555(94243038, +), CAediting_376556(94243039, +), CAediting_376557(94243096, +), CAediting_376558(94278463, +), CAediting_376559(94278502, +), CAediting_376560(94281766, +), CAediting_376561(94281835, +), CAediting_376562(94284060, +), CAediting_376563(94284067, +), CAediting_376564(94284134, +), CAediting_376565(94284180, +), CAediting_376566(94284242, +), CAediting_376567(94284426, +), CAediting_376568(94284430, +), CAediting_376569(94284485, +), CAediting_376570(94284498, +), CAediting_376571(94284503, +), |
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RNA editing positional annotations for SMARCAD1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_376558 | chr4_94278463_+ | nonsynonymous SNV | ENST00000354268.7 | c.A2124G | p.I708M | D | D | N |
CAediting_376558 | chr4_94278463_+ | nonsynonymous SNV | ENST00000359052.7 | c.A2124G | p.I708M | D | D | N |
CAediting_376558 | chr4_94278463_+ | nonsynonymous SNV | ENST00000457823.5 | c.A2124G | p.I708M | D | D | N |
CAediting_376558 | chr4_94278463_+ | nonsynonymous SNV | ENST00000509418.1 | c.A834G | p.I278M | D | D | N |
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CAeditome ID | Position | Variant type |
CAediting_376524 | chr4_94210716_+ | intronic |
CAediting_376525 | chr4_94210747_+ | intronic |
CAediting_376526 | chr4_94210752_+ | intronic |
CAediting_376527 | chr4_94210757_+ | intronic |
CAediting_376528 | chr4_94210772_+ | intronic |
CAediting_376529 | chr4_94210813_+ | intronic |
CAediting_376530 | chr4_94210814_+ | intronic |
CAediting_376531 | chr4_94210827_+ | intronic |
CAediting_376532 | chr4_94210854_+ | intronic |
CAediting_376533 | chr4_94211071_+ | intronic |
CAediting_376534 | chr4_94211108_+ | intronic |
CAediting_376535 | chr4_94211112_+ | intronic |
CAediting_376536 | chr4_94211115_+ | intronic |
CAediting_376537 | chr4_94212761_+ | intronic |
CAediting_376538 | chr4_94214391_+ | intronic |
CAediting_376539 | chr4_94226966_+ | intronic |
CAediting_376540 | chr4_94231988_+ | intronic |
CAediting_376541 | chr4_94231991_+ | intronic |
CAediting_376542 | chr4_94232106_+ | intronic |
CAediting_376543 | chr4_94232123_+ | intronic |
CAediting_376544 | chr4_94232689_+ | intronic |
CAediting_376545 | chr4_94232849_+ | intronic |
CAediting_376546 | chr4_94232930_+ | intronic |
CAediting_376547 | chr4_94238562_+ | intronic |
CAediting_376548 | chr4_94242635_+ | intronic |
CAediting_376549 | chr4_94242702_+ | intronic |
CAediting_376550 | chr4_94242770_+ | intronic |
CAediting_376551 | chr4_94242784_+ | intronic |
CAediting_376552 | chr4_94242786_+ | intronic |
CAediting_376553 | chr4_94242841_+ | intronic |
CAediting_376554 | chr4_94243037_+ | intronic |
CAediting_376555 | chr4_94243038_+ | intronic |
CAediting_376556 | chr4_94243039_+ | intronic |
CAediting_376557 | chr4_94243096_+ | intronic |
CAediting_376558 | chr4_94278463_+ | exonic |
CAediting_376559 | chr4_94278502_+ | exonic |
CAediting_376560 | chr4_94281766_+ | intronic |
CAediting_376561 | chr4_94281835_+ | intronic |
CAediting_376562 | chr4_94284060_+ | intronic |
CAediting_376563 | chr4_94284067_+ | intronic |
CAediting_376564 | chr4_94284134_+ | intronic |
CAediting_376565 | chr4_94284180_+ | intronic |
CAediting_376566 | chr4_94284242_+ | intronic |
CAediting_376567 | chr4_94284426_+ | intronic |
CAediting_376568 | chr4_94284430_+ | intronic |
CAediting_376569 | chr4_94284485_+ | intronic |
CAediting_376570 | chr4_94284498_+ | intronic |
CAediting_376571 | chr4_94284503_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_376524 | chr4_94210716_+ | SINE | Alu | AluSx |
CAediting_376525 | chr4_94210747_+ | SINE | Alu | AluSx |
CAediting_376526 | chr4_94210752_+ | SINE | Alu | AluSx |
CAediting_376527 | chr4_94210757_+ | SINE | Alu | AluSx |
CAediting_376528 | chr4_94210772_+ | SINE | Alu | AluSx |
CAediting_376529 | chr4_94210813_+ | SINE | Alu | AluSx |
CAediting_376530 | chr4_94210814_+ | SINE | Alu | AluSx |
CAediting_376531 | chr4_94210827_+ | SINE | Alu | AluSx |
CAediting_376532 | chr4_94210854_+ | SINE | Alu | AluSx |
CAediting_376533 | chr4_94211071_+ | SINE | Alu | AluSp |
CAediting_376534 | chr4_94211108_+ | SINE | Alu | AluSp |
CAediting_376535 | chr4_94211112_+ | SINE | Alu | AluSp |
CAediting_376536 | chr4_94211115_+ | SINE | Alu | AluSp |
CAediting_376537 | chr4_94212761_+ | SINE | Alu | AluSx |
CAediting_376538 | chr4_94214391_+ | SINE | Alu | AluY |
CAediting_376539 | chr4_94226966_+ | SINE | Alu | AluJr |
CAediting_376540 | chr4_94231988_+ | SINE | Alu | AluSx1 |
CAediting_376541 | chr4_94231991_+ | SINE | Alu | AluSx1 |
CAediting_376542 | chr4_94232106_+ | SINE | Alu | AluSx1 |
CAediting_376543 | chr4_94232123_+ | SINE | Alu | AluSx1 |
CAediting_376544 | chr4_94232689_+ | SINE | Alu | AluJb |
CAediting_376545 | chr4_94232849_+ | SINE | Alu | AluJb |
CAediting_376546 | chr4_94232930_+ | SINE | Alu | AluJb |
CAediting_376547 | chr4_94238562_+ | SINE | Alu | AluJo |
CAediting_376548 | chr4_94242635_+ | SINE | Alu | AluJo |
CAediting_376549 | chr4_94242702_+ | SINE | Alu | AluJo |
CAediting_376550 | chr4_94242770_+ | SINE | Alu | AluJo |
CAediting_376551 | chr4_94242784_+ | SINE | Alu | AluJo |
CAediting_376552 | chr4_94242786_+ | SINE | Alu | AluJo |
CAediting_376553 | chr4_94242841_+ | SINE | Alu | AluJo |
CAediting_376554 | chr4_94243037_+ | SINE | Alu | AluSx |
CAediting_376555 | chr4_94243038_+ | SINE | Alu | AluSx |
CAediting_376556 | chr4_94243039_+ | SINE | Alu | AluSx |
CAediting_376557 | chr4_94243096_+ | SINE | Alu | AluSx |
CAediting_376560 | chr4_94281766_+ | SINE | Alu | AluSz6 |
CAediting_376561 | chr4_94281835_+ | SINE | Alu | AluSz6 |
CAediting_376562 | chr4_94284060_+ | SINE | Alu | AluY |
CAediting_376563 | chr4_94284067_+ | SINE | Alu | AluY |
CAediting_376564 | chr4_94284134_+ | SINE | Alu | AluY |
CAediting_376565 | chr4_94284180_+ | SINE | Alu | AluY |
CAediting_376566 | chr4_94284242_+ | SINE | Alu | AluY |
CAediting_376567 | chr4_94284426_+ | SINE | Alu | AluSz6 |
CAediting_376568 | chr4_94284430_+ | SINE | Alu | AluSz6 |
CAediting_376569 | chr4_94284485_+ | SINE | Alu | AluSz6 |
CAediting_376570 | chr4_94284498_+ | SINE | Alu | AluSz6 |
CAediting_376571 | chr4_94284503_+ | SINE | Alu | AluSz6 |
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RNA A-to-I editing events in the alternative splicing sites for SMARCAD1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SMARCAD1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for SMARCAD1 |
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The effects of the RNA editing to the miRNA binding sites for SMARCAD1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_376559 | chr4_94278502_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-1200 | 94278496 | 94278502 | 7mer-m8 | 94278482 | 94278503 | 140.00 | -17.48 |
CAediting_376559 | chr4_94278502_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-4324 | 94278495 | 94278502 | 8mer-1a | 94278483 | 94278502 | 140.00 | -11.00 |
CAediting_376559 | chr4_94278502_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-6845-3p | 94278499 | 94278505 | 7mer-m8 | 94278486 | 94278506 | 140.00 | -11.97 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_376559 | chr4_94278502_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-12119 | 94278496 | 94278502 | 7mer-1a | 94278479 | 94278502 | 140 | -15.77 |
CAediting_376558 | chr4_94278463_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-26a-1-3p | 94278457 | 94278463 | 7mer-m8 | 94278445 | 94278464 | 145 | -10.12 |
CAediting_376558 | chr4_94278463_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-26a-2-3p | 94278457 | 94278463 | 7mer-m8 | 94278443 | 94278464 | 147 | -9.12 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000163104.16 | ENST00000359052 | hsa-miR-200b-3p | 94290493 | 94290500 | 8mer-1a | 94290479 | 94290500 | 164 | -23.18 |
CAediting_393 | chr1_1167164_+ | ENSG00000163104.16 | ENST00000457823 | hsa-miR-200b-3p | 94290493 | 94290500 | 8mer-1a | 94290479 | 94290500 | 164 | -23.18 |
CAediting_393 | chr1_1167164_+ | ENSG00000163104.16 | ENST00000354268 | hsa-miR-200b-3p | 94290493 | 94290500 | 8mer-1a | 94290479 | 94290500 | 164 | -23.18 |
CAediting_228905 | chr2_188297554_+ | ENSG00000163104.16 | ENST00000359052 | hsa-miR-561-3p | 94290913 | 94290919 | 7mer-m8 | 94290898 | 94290920 | 152 | -10.46 |
CAediting_228905 | chr2_188297554_+ | ENSG00000163104.16 | ENST00000359052 | hsa-miR-561-3p | 94290531 | 94290537 | 7mer-m8 | 94290517 | 94290538 | 151 | -9.75 |
CAediting_442554 | chr5_154685830_+ | ENSG00000163104.16 | ENST00000359052 | hsa-miR-1303 | 94289695 | 94289702 | 8mer-1a | 94289681 | 94289702 | 140 | -12.99 |
CAediting_228905 | chr2_188297554_+ | ENSG00000163104.16 | ENST00000457823 | hsa-miR-561-3p | 94290531 | 94290537 | 7mer-m8 | 94290517 | 94290538 | 151 | -9.75 |
CAediting_442554 | chr5_154685830_+ | ENSG00000163104.16 | ENST00000457823 | hsa-miR-1303 | 94289695 | 94289702 | 8mer-1a | 94289681 | 94289702 | 140 | -12.99 |
CAediting_228905 | chr2_188297554_+ | ENSG00000163104.16 | ENST00000354268 | hsa-miR-561-3p | 94290913 | 94290919 | 7mer-m8 | 94290898 | 94290920 | 152 | -10.46 |
CAediting_228905 | chr2_188297554_+ | ENSG00000163104.16 | ENST00000354268 | hsa-miR-561-3p | 94290531 | 94290537 | 7mer-m8 | 94290517 | 94290538 | 151 | -9.75 |
CAediting_442554 | chr5_154685830_+ | ENSG00000163104.16 | ENST00000354268 | hsa-miR-1303 | 94289695 | 94289702 | 8mer-1a | 94289681 | 94289702 | 140 | -12.99 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000163104.16 | ENST00000510105 | hsa-miR-548aa | 94248528 | 94248534 | 7mer-m8 | 94248511 | 94248535 | 146 | -12.47 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000163104.16 | ENST00000510105 | hsa-miR-548aa | 94252739 | 94252746 | 8mer-1a | 94252721 | 94252746 | 151 | -10.73 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-548aa | 94252739 | 94252746 | 8mer-1a | 94252721 | 94252746 | 151 | -10.73 |
CAediting_1351755 | chr19_40282625_- | ENSG00000163104.16 | ENST00000394961 | hsa-miR-641 | 94279029 | 94279036 | 8mer-1a | 94279013 | 94279036 | 150 | -12.71 |
CAediting_228905 | chr2_188297554_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-561-3p | 94289547 | 94289552 | 6mer | 94289532 | 94289553 | 142 | -10.98 |
CAediting_442554 | chr5_154685830_+ | ENSG00000163104.16 | ENST00000394961 | hsa-miR-1303 | 94289695 | 94289702 | 8mer-1a | 94289681 | 94289702 | 140 | -12.99 |
CAediting_442554 | chr5_154685830_+ | ENSG00000163104.16 | ENST00000509418 | hsa-miR-1303 | 94289695 | 94289702 | 8mer-1a | 94289681 | 94289702 | 140 | -12.99 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_442554 | chr5_154685830_+ | ENSG00000163104.16 | ENST00000359052 | hsa-miR-1303 | 94291213 | 94291219 | 7mer-m8 | 94291198 | 94291220 | 147 | -9.76 |
CAediting_393 | chr1_1167164_+ | ENSG00000163104.16 | ENST00000359052 | hsa-miR-200b-3p | 94289843 | 94289849 | 7mer-m8 | 94289826 | 94289850 | 146 | -7.55 |
CAediting_468389 | chr6_31355314_- | ENSG00000163104.16 | ENST00000359052 | hsa-miR-6891-5p | 94291047 | 94291053 | 7mer-m8 | 94291035 | 94291054 | 147 | -14.96 |
CAediting_393 | chr1_1167164_+ | ENSG00000163104.16 | ENST00000457823 | hsa-miR-200b-3p | 94289843 | 94289849 | 7mer-m8 | 94289826 | 94289850 | 146 | -7.55 |
CAediting_442554 | chr5_154685830_+ | ENSG00000163104.16 | ENST00000354268 | hsa-miR-1303 | 94291213 | 94291219 | 7mer-m8 | 94291198 | 94291220 | 147 | -9.76 |
CAediting_393 | chr1_1167164_+ | ENSG00000163104.16 | ENST00000354268 | hsa-miR-200b-3p | 94289843 | 94289849 | 7mer-m8 | 94289826 | 94289850 | 146 | -7.55 |
CAediting_468389 | chr6_31355314_- | ENSG00000163104.16 | ENST00000354268 | hsa-miR-6891-5p | 94291047 | 94291053 | 7mer-m8 | 94291035 | 94291054 | 147 | -14.96 |
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The effects of the RNA editing to the stability of the RNA structures for SMARCAD1 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_376558 | ENST00000354268.7 | chr4_94278463_+ | -1161.10 | -1156.60 | -1161.10 |
CAediting_376559 | ENST00000354268.7 | chr4_94278502_+ | -1156.60 | -1156.60 | -1161.10 |
CAediting_376558 | ENST00000359052.7 | chr4_94278463_+ | -1187.50 | -1183.00 | -1187.50 |
CAediting_376559 | ENST00000359052.7 | chr4_94278502_+ | -1183.00 | -1183.00 | -1187.50 |
CAediting_376558 | ENST00000394961.5 | chr4_94278463_+ | -915.04 | -914.24 | -915.54 |
CAediting_376559 | ENST00000394961.5 | chr4_94278502_+ | -914.24 | -914.24 | -915.54 |
CAediting_376558 | ENST00000457823.5 | chr4_94278463_+ | -1171.90 | -1167.20 | -1171.90 |
CAediting_376559 | ENST00000457823.5 | chr4_94278502_+ | -1167.20 | -1167.20 | -1171.90 |
CAediting_376558 | ENST00000509418.1 | chr4_94278463_+ | -555.40 | -554.60 | -556.60 |
CAediting_376559 | ENST00000509418.1 | chr4_94278502_+ | -554.60 | -554.60 | -556.60 |
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Relation with ADAR for SMARCAD1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for SMARCAD1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SMARCAD1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for SMARCAD1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SMARCAD1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
SMARCAD1 | C0406707 | Basan syndrome | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
SMARCAD1 | C4551675 | Keratoderma, Palmoplantar | 2 | GENOMICS_ENGLAND |
SMARCAD1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
SMARCAD1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
SMARCAD1 | C0406767 | Keratoderma with scleroatrophy of the extremities | 1 | CTD_human;ORPHANET |
SMARCAD1 | C1852150 | Fingerprints, Absence of | 1 | CTD_human;ORPHANET |