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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: C15orf39 (CAeditome ID:56905) |
Gene summary for C15orf39 |
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Gene information | Gene symbol | C15orf39 | Gene ID | 56905 |
Gene name | chromosome 15 open reading frame 39 | |
Synonyms | - | |
Cytomap | 15q24.2 | |
Type of gene | protein-coding | |
Description | uncharacterized protein C15orf39 | |
Modification date | 20210518 | |
UniProtAcc | Q6ZRI6 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
C15orf39 | GO:0005829 | Uncharacterized protein C15orf39 | 0000052 |
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RNA A-to-I events for C15orf39 |
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CAediting_1061841(75207740, +), |
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RNA editing positional annotations for C15orf39 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1061841 | chr15_75207740_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for C15orf39 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for C15orf39 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for C15orf39 |
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The effects of the RNA editing to the miRNA binding sites for C15orf39 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000167173.17 | ENST00000360639 | hsa-miR-624-3p | 75211242 | 75211248 | 7mer-m8 | 75211228 | 75211249 | 142 | -22.36 |
CAediting_980496 | chr14_31014685_- | ENSG00000167173.17 | ENST00000360639 | hsa-miR-624-3p | 75211509 | 75211515 | 7mer-m8 | 75211498 | 75211516 | 163 | -17.16 |
CAediting_393 | chr1_1167164_+ | ENSG00000167173.17 | ENST00000360639 | hsa-miR-200b-3p | 75211669 | 75211675 | 7mer-m8 | 75211655 | 75211676 | 149 | -12.4 |
CAediting_980496 | chr14_31014685_- | ENSG00000167173.17 | ENST00000394987 | hsa-miR-624-3p | 75211242 | 75211248 | 7mer-m8 | 75211228 | 75211249 | 142 | -22.36 |
CAediting_980496 | chr14_31014685_- | ENSG00000167173.17 | ENST00000394987 | hsa-miR-624-3p | 75211509 | 75211515 | 7mer-m8 | 75211498 | 75211516 | 163 | -17.16 |
CAediting_393 | chr1_1167164_+ | ENSG00000167173.17 | ENST00000394987 | hsa-miR-200b-3p | 75211669 | 75211675 | 7mer-m8 | 75211655 | 75211676 | 149 | -12.4 |
CAediting_980496 | chr14_31014685_- | ENSG00000167173.17 | ENST00000567617 | hsa-miR-624-3p | 75211242 | 75211248 | 7mer-m8 | 75211228 | 75211249 | 142 | -22.36 |
CAediting_980496 | chr14_31014685_- | ENSG00000167173.17 | ENST00000567617 | hsa-miR-624-3p | 75211509 | 75211515 | 7mer-m8 | 75211498 | 75211516 | 163 | -17.16 |
CAediting_393 | chr1_1167164_+ | ENSG00000167173.17 | ENST00000567617 | hsa-miR-200b-3p | 75211669 | 75211675 | 7mer-m8 | 75211655 | 75211676 | 149 | -12.4 |
CAediting_688080 | chr9_63819626_+ | ENSG00000167173.17 | ENST00000567617 | hsa-miR-4477b | 75211050 | 75211056 | 7mer-m8 | 75211038 | 75211057 | 157 | -17.53 |
CAediting_1054808 | chr15_66496985_- | ENSG00000167173.17 | ENST00000360639 | hsa-miR-4512 | 75211816 | 75211823 | 8mer-1a | 75211803 | 75211823 | 151 | -22.69 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000360639 | hsa-miR-197-5p | 75211152 | 75211158 | 7mer-m8 | 75211138 | 75211159 | 160 | -24.76 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000360639 | hsa-miR-197-5p | 75211806 | 75211811 | 6mer | 75211790 | 75211812 | 140 | -31.08 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000360639 | hsa-miR-197-5p | 75211868 | 75211873 | 6mer | 75211849 | 75211874 | 144 | -33.5 |
CAediting_1054808 | chr15_66496985_- | ENSG00000167173.17 | ENST00000394987 | hsa-miR-4512 | 75211816 | 75211823 | 8mer-1a | 75211803 | 75211823 | 151 | -22.69 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000394987 | hsa-miR-197-5p | 75211152 | 75211158 | 7mer-m8 | 75211138 | 75211159 | 160 | -24.76 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000394987 | hsa-miR-197-5p | 75211806 | 75211811 | 6mer | 75211790 | 75211812 | 140 | -31.08 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000394987 | hsa-miR-197-5p | 75211868 | 75211873 | 6mer | 75211849 | 75211874 | 144 | -33.5 |
CAediting_1054808 | chr15_66496985_- | ENSG00000167173.17 | ENST00000567617 | hsa-miR-4512 | 75211816 | 75211823 | 8mer-1a | 75211803 | 75211823 | 151 | -22.69 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000567617 | hsa-miR-197-5p | 75211806 | 75211811 | 6mer | 75211790 | 75211812 | 140 | -31.08 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000567617 | hsa-miR-197-5p | 75211868 | 75211873 | 6mer | 75211849 | 75211874 | 144 | -33.5 |
CAediting_86358 | chr1_109598906_+ | ENSG00000167173.17 | ENST00000567617 | hsa-miR-197-5p | 75211152 | 75211158 | 7mer-m8 | 75211138 | 75211159 | 160 | -24.76 |
CAediting_396018 | chr5_1062918_- | ENSG00000167173.17 | ENST00000567617 | hsa-miR-4635 | 75211051 | 75211058 | 8mer-1a | 75211038 | 75211058 | 142 | -19.23 |
CAediting_524911 | chr7_5495852_- | ENSG00000167173.17 | ENST00000565074 | hsa-miR-589-3p | 75209042 | 75209048 | 7mer-m8 | 75209025 | 75209049 | 158 | -19.51 |
CAediting_468389 | chr6_31355314_- | ENSG00000167173.17 | ENST00000567617 | hsa-miR-6891-5p | 75210778 | 75210785 | 8mer-1a | 75210767 | 75210785 | 141 | -19.03 |
CAediting_468389 | chr6_31355314_- | ENSG00000167173.17 | ENST00000565074 | hsa-miR-6891-5p | 75209099 | 75209105 | 7mer-m8 | 75209088 | 75209106 | 153 | -23.03 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1368054 | chr19_46709310_- | ENSG00000167173.17 | ENST00000565074 | hsa-miR-320e | 75209531 | 75209537 | 7mer-m8 | 75209521 | 75209538 | 141 | -14.77 |
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The effects of the RNA editing to the stability of the RNA structures for C15orf39 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for C15orf39 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for C15orf39 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for C15orf39 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for C15orf39 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C15orf39 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |