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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TMPRSS4 (CAeditome ID:56649)

Gene summary for TMPRSS4

check button Gene summary
Gene informationGene symbol

TMPRSS4

Gene ID

56649

Gene nametransmembrane serine protease 4
SynonymsCAP2|CAPH2|MT-SP2|TMPRSS3
Cytomap

11q23.3

Type of geneprotein-coding
Descriptiontransmembrane protease serine 4channel-activating protease 2channel-activating serine protease 2membrane-type serine protease 2transmembrane protease, serine 4transmembrane serine protease 3type II membrane serine protease
Modification date20210529
UniProtAcc

Q9NRS4

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TMPRSS4

GO:0010468

Transmembrane protease serine 4

29529050

TMPRSS4

GO:0045967

Transmembrane protease serine 4

29529050

TMPRSS4

GO:0008236

Transmembrane protease serine 4

24434139

TMPRSS4

GO:0006508

Transmembrane protease serine 4

24434139

TMPRSS4

GO:0016485

Transmembrane protease serine 4

24434139

TMPRSS4

GO:0046598

Transmembrane protease serine 4

32404436

TMPRSS4

GO:0005615

Transmembrane protease serine 4

24434139

TMPRSS4

GO:0030141

Transmembrane protease serine 4

29529050


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RNA A-to-I events for TMPRSS4

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000137648.15
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_854321(118089945, +), CAediting_854322(118089962, +), CAediting_854323(118089974, +), CAediting_854324(118089984, +), CAediting_854325(118090025, +), CAediting_854326(118090034, +), CAediting_854327(118090042, +), CAediting_854328(118090103, +), CAediting_854329(118090104, +), CAediting_854330(118090116, +), CAediting_854331(118090499, +), CAediting_854332(118090503, +), CAediting_854333(118090513, +), CAediting_854334(118090515, +), CAediting_854335(118090521, +), CAediting_854336(118090522, +), CAediting_854337(118090527, +), CAediting_854338(118090530, +), CAediting_854339(118090552, +), CAediting_854340(118090657, +), CAediting_854341(118090667, +), CAediting_854342(118090698, +), CAediting_854343(118090703, +), CAediting_854344(118096510, +), CAediting_854345(118096520, +), CAediting_854346(118096525, +), CAediting_854347(118096528, +), CAediting_854348(118096529, +), CAediting_854349(118096534, +), CAediting_854350(118096537, +), CAediting_854351(118096550, +), CAediting_854352(118096599, +), CAediting_854353(118096600, +), CAediting_854354(118096607, +), CAediting_854355(118096608, +), CAediting_854356(118096639, +), CAediting_854357(118096640, +), CAediting_854358(118096655, +), CAediting_854359(118096665, +), CAediting_854360(118096671, +), CAediting_854361(118096693, +), CAediting_854362(118096694, +), CAediting_854363(118096711, +), CAediting_854364(118096714, +), CAediting_854365(118096735, +), CAediting_854366(118097824, +), CAediting_854367(118097827, +), CAediting_854368(118097840, +), CAediting_854369(118097910, +), CAediting_854370(118097920, +), CAediting_854371(118097953, +), CAediting_854372(118097959, +), CAediting_854373(118097979, +), CAediting_854374(118098032, +), CAediting_854375(118101497, +), CAediting_854376(118101500, +), CAediting_854377(118101524, +), CAediting_854378(118101532, +), CAediting_854379(118101553, +), CAediting_854380(118101567, +), CAediting_854381(118101573, +), CAediting_854382(118101574, +), CAediting_854383(118101577, +), CAediting_854384(118101578, +), CAediting_854385(118101591, +), CAediting_854386(118101599, +), CAediting_854387(118101600, +), CAediting_854388(118101607, +), CAediting_854389(118101613, +), CAediting_854390(118101615, +), CAediting_854391(118101621, +), CAediting_854392(118101623, +), CAediting_854393(118101688, +), CAediting_854394(118101690, +), CAediting_854395(118101694, +), CAediting_854396(118101713, +), CAediting_854397(118101714, +), CAediting_854398(118101715, +), CAediting_854399(118101717, +), CAediting_854400(118101734, +), CAediting_854401(118101739, +), CAediting_854402(118101740, +), CAediting_854403(118101741, +), CAediting_854404(118101753, +), CAediting_854405(118101763, +), CAediting_854406(118102431, +), CAediting_854407(118102444, +), CAediting_854408(118102452, +), CAediting_854409(118102453, +), CAediting_854410(118102501, +), CAediting_854411(118102517, +), CAediting_854412(118102562, +), CAediting_854413(118102588, +), CAediting_854414(118102589, +), CAediting_854415(118102594, +), CAediting_854416(118102598, +), CAediting_854417(118102602, +), CAediting_854418(118102624, +), CAediting_854419(118102628, +), CAediting_854420(118102629, +), CAediting_854421(118102630, +), CAediting_854422(118106546, +), CAediting_854423(118106565, +), CAediting_854424(118106578, +), CAediting_854425(118106659, +), CAediting_854426(118110422, +), CAediting_854427(118110514, +), CAediting_854428(118110665, +), CAediting_854429(118115556, +), CAediting_854430(118115564, +), CAediting_854431(118115565, +), CAediting_854432(118115610, +), CAediting_854433(118115614, +), CAediting_854434(118115618, +), CAediting_854435(118115619, +), CAediting_854436(118115624, +), CAediting_854437(118115649, +), CAediting_854438(118115655, +), CAediting_854439(118115658, +), CAediting_854440(118115667, +), CAediting_854441(118115672, +), CAediting_854442(118115676, +), CAediting_854443(118115702, +), CAediting_854444(118115703, +), CAediting_854445(118115735, +), CAediting_854446(118115755, +), CAediting_854447(118115768, +), CAediting_854448(118115810, +), CAediting_854449(118115811, +), CAediting_854450(118116745, +), CAediting_854451(118116762, +), CAediting_854452(118116824, +), CAediting_854453(118116829, +), CAediting_854454(118116851, +), CAediting_854455(118116972, +), CAediting_854456(118116985, +), CAediting_854457(118121452, +), CAediting_854458(118121459, +), CAediting_854459(118121498, +), CAediting_854460(118121524, +), CAediting_854461(118121525, +), CAediting_854462(118121539, +), CAediting_854463(118121542, +), CAediting_854464(118121568, +), CAediting_854465(118121593, +), CAediting_854466(118121594, +),

Top

RNA editing positional annotations for TMPRSS4 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_854321chr11_118089945_+ncRNA_intronic
CAediting_854322chr11_118089962_+ncRNA_intronic
CAediting_854323chr11_118089974_+ncRNA_intronic
CAediting_854324chr11_118089984_+ncRNA_intronic
CAediting_854325chr11_118090025_+ncRNA_intronic
CAediting_854326chr11_118090034_+ncRNA_intronic
CAediting_854327chr11_118090042_+ncRNA_intronic
CAediting_854328chr11_118090103_+ncRNA_intronic
CAediting_854329chr11_118090104_+ncRNA_intronic
CAediting_854330chr11_118090116_+ncRNA_intronic
CAediting_854331chr11_118090499_+ncRNA_intronic
CAediting_854332chr11_118090503_+ncRNA_intronic
CAediting_854333chr11_118090513_+ncRNA_intronic
CAediting_854334chr11_118090515_+ncRNA_intronic
CAediting_854335chr11_118090521_+ncRNA_intronic
CAediting_854336chr11_118090522_+ncRNA_intronic
CAediting_854337chr11_118090527_+ncRNA_intronic
CAediting_854338chr11_118090530_+ncRNA_intronic
CAediting_854339chr11_118090552_+ncRNA_intronic
CAediting_854340chr11_118090657_+ncRNA_intronic
CAediting_854341chr11_118090667_+ncRNA_intronic
CAediting_854342chr11_118090698_+ncRNA_intronic
CAediting_854343chr11_118090703_+ncRNA_intronic
CAediting_854344chr11_118096510_+ncRNA_intronic
CAediting_854345chr11_118096520_+ncRNA_intronic
CAediting_854346chr11_118096525_+ncRNA_intronic
CAediting_854347chr11_118096528_+ncRNA_intronic
CAediting_854348chr11_118096529_+ncRNA_intronic
CAediting_854349chr11_118096534_+ncRNA_intronic
CAediting_854350chr11_118096537_+ncRNA_intronic
CAediting_854351chr11_118096550_+ncRNA_intronic
CAediting_854352chr11_118096599_+ncRNA_intronic
CAediting_854353chr11_118096600_+ncRNA_intronic
CAediting_854354chr11_118096607_+ncRNA_intronic
CAediting_854355chr11_118096608_+ncRNA_intronic
CAediting_854356chr11_118096639_+ncRNA_intronic
CAediting_854357chr11_118096640_+ncRNA_intronic
CAediting_854358chr11_118096655_+ncRNA_intronic
CAediting_854359chr11_118096665_+ncRNA_intronic
CAediting_854360chr11_118096671_+ncRNA_intronic
CAediting_854361chr11_118096693_+ncRNA_intronic
CAediting_854362chr11_118096694_+ncRNA_intronic
CAediting_854363chr11_118096711_+ncRNA_intronic
CAediting_854364chr11_118096714_+ncRNA_intronic
CAediting_854365chr11_118096735_+ncRNA_intronic
CAediting_854366chr11_118097824_+ncRNA_intronic
CAediting_854367chr11_118097827_+ncRNA_intronic
CAediting_854368chr11_118097840_+ncRNA_intronic
CAediting_854369chr11_118097910_+ncRNA_intronic
CAediting_854370chr11_118097920_+ncRNA_intronic
CAediting_854371chr11_118097953_+ncRNA_intronic
CAediting_854372chr11_118097959_+ncRNA_intronic
CAediting_854373chr11_118097979_+ncRNA_intronic
CAediting_854374chr11_118098032_+ncRNA_intronic
CAediting_854375chr11_118101497_+ncRNA_intronic
CAediting_854376chr11_118101500_+ncRNA_intronic
CAediting_854377chr11_118101524_+ncRNA_intronic
CAediting_854378chr11_118101532_+ncRNA_intronic
CAediting_854379chr11_118101553_+ncRNA_intronic
CAediting_854380chr11_118101567_+ncRNA_intronic
CAediting_854381chr11_118101573_+ncRNA_intronic
CAediting_854382chr11_118101574_+ncRNA_intronic
CAediting_854383chr11_118101577_+ncRNA_intronic
CAediting_854384chr11_118101578_+ncRNA_intronic
CAediting_854385chr11_118101591_+ncRNA_intronic
CAediting_854386chr11_118101599_+ncRNA_intronic
CAediting_854387chr11_118101600_+ncRNA_intronic
CAediting_854388chr11_118101607_+ncRNA_intronic
CAediting_854389chr11_118101613_+ncRNA_intronic
CAediting_854390chr11_118101615_+ncRNA_intronic
CAediting_854391chr11_118101621_+ncRNA_intronic
CAediting_854392chr11_118101623_+ncRNA_intronic
CAediting_854393chr11_118101688_+ncRNA_intronic
CAediting_854394chr11_118101690_+ncRNA_intronic
CAediting_854395chr11_118101694_+ncRNA_intronic
CAediting_854396chr11_118101713_+ncRNA_intronic
CAediting_854397chr11_118101714_+ncRNA_intronic
CAediting_854398chr11_118101715_+ncRNA_intronic
CAediting_854399chr11_118101717_+ncRNA_intronic
CAediting_854400chr11_118101734_+ncRNA_intronic
CAediting_854401chr11_118101739_+ncRNA_intronic
CAediting_854402chr11_118101740_+ncRNA_intronic
CAediting_854403chr11_118101741_+ncRNA_intronic
CAediting_854404chr11_118101753_+ncRNA_intronic
CAediting_854405chr11_118101763_+ncRNA_intronic
CAediting_854406chr11_118102431_+ncRNA_intronic
CAediting_854407chr11_118102444_+ncRNA_intronic
CAediting_854408chr11_118102452_+ncRNA_intronic
CAediting_854409chr11_118102453_+ncRNA_intronic
CAediting_854410chr11_118102501_+ncRNA_intronic
CAediting_854411chr11_118102517_+ncRNA_intronic
CAediting_854412chr11_118102562_+ncRNA_intronic
CAediting_854413chr11_118102588_+ncRNA_intronic
CAediting_854414chr11_118102589_+ncRNA_intronic
CAediting_854415chr11_118102594_+ncRNA_intronic
CAediting_854416chr11_118102598_+ncRNA_intronic
CAediting_854417chr11_118102602_+ncRNA_intronic
CAediting_854418chr11_118102624_+ncRNA_intronic
CAediting_854419chr11_118102628_+ncRNA_intronic
CAediting_854420chr11_118102629_+ncRNA_intronic
CAediting_854421chr11_118102630_+ncRNA_intronic
CAediting_854422chr11_118106546_+ncRNA_exonic
CAediting_854423chr11_118106565_+ncRNA_exonic
CAediting_854424chr11_118106578_+ncRNA_exonic
CAediting_854425chr11_118106659_+ncRNA_exonic
CAediting_854426chr11_118110422_+ncRNA_intronic
CAediting_854427chr11_118110514_+ncRNA_intronic
CAediting_854428chr11_118110665_+ncRNA_intronic
CAediting_854429chr11_118115556_+ncRNA_exonic
CAediting_854430chr11_118115564_+ncRNA_intronic
CAediting_854431chr11_118115565_+ncRNA_intronic
CAediting_854432chr11_118115610_+ncRNA_intronic
CAediting_854433chr11_118115614_+ncRNA_intronic
CAediting_854434chr11_118115618_+ncRNA_intronic
CAediting_854435chr11_118115619_+ncRNA_intronic
CAediting_854436chr11_118115624_+ncRNA_intronic
CAediting_854437chr11_118115649_+ncRNA_intronic
CAediting_854438chr11_118115655_+ncRNA_intronic
CAediting_854439chr11_118115658_+ncRNA_intronic
CAediting_854440chr11_118115667_+ncRNA_intronic
CAediting_854441chr11_118115672_+ncRNA_intronic
CAediting_854442chr11_118115676_+ncRNA_intronic
CAediting_854443chr11_118115702_+ncRNA_intronic
CAediting_854444chr11_118115703_+ncRNA_intronic
CAediting_854445chr11_118115735_+ncRNA_intronic
CAediting_854446chr11_118115755_+ncRNA_intronic
CAediting_854447chr11_118115768_+ncRNA_intronic
CAediting_854448chr11_118115810_+ncRNA_intronic
CAediting_854449chr11_118115811_+ncRNA_intronic
CAediting_854450chr11_118116745_+ncRNA_intronic
CAediting_854451chr11_118116762_+ncRNA_intronic
CAediting_854452chr11_118116824_+ncRNA_intronic
CAediting_854453chr11_118116829_+ncRNA_intronic
CAediting_854454chr11_118116851_+ncRNA_intronic
CAediting_854455chr11_118116972_+ncRNA_intronic
CAediting_854456chr11_118116985_+ncRNA_intronic
CAediting_854457chr11_118121452_+UTR3
CAediting_854458chr11_118121459_+UTR3
CAediting_854459chr11_118121498_+UTR3
CAediting_854460chr11_118121524_+UTR3
CAediting_854461chr11_118121525_+UTR3
CAediting_854462chr11_118121539_+UTR3
CAediting_854463chr11_118121542_+UTR3
CAediting_854464chr11_118121568_+UTR3
CAediting_854465chr11_118121593_+UTR3
CAediting_854466chr11_118121594_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_854321chr11_118089945_+SINEAluAluSx
CAediting_854322chr11_118089962_+SINEAluAluSx
CAediting_854323chr11_118089974_+SINEAluAluSx
CAediting_854324chr11_118089984_+SINEAluAluSx
CAediting_854325chr11_118090025_+SINEAluAluSx
CAediting_854326chr11_118090034_+SINEAluAluSx
CAediting_854327chr11_118090042_+SINEAluAluSx
CAediting_854328chr11_118090103_+SINEAluAluSx
CAediting_854329chr11_118090104_+SINEAluAluSx
CAediting_854330chr11_118090116_+SINEAluAluSx
CAediting_854331chr11_118090499_+SINEAluAluJb
CAediting_854332chr11_118090503_+SINEAluAluJb
CAediting_854333chr11_118090513_+SINEAluAluJb
CAediting_854334chr11_118090515_+SINEAluAluJb
CAediting_854335chr11_118090521_+SINEAluAluJb
CAediting_854336chr11_118090522_+SINEAluAluJb
CAediting_854337chr11_118090527_+SINEAluAluJb
CAediting_854338chr11_118090530_+SINEAluAluJb
CAediting_854339chr11_118090552_+SINEAluAluJb
CAediting_854340chr11_118090657_+SINEAluAluJb
CAediting_854341chr11_118090667_+SINEAluAluJb
CAediting_854342chr11_118090698_+SINEAluAluJb
CAediting_854343chr11_118090703_+SINEAluAluJb
CAediting_854344chr11_118096510_+SINEAluAluJb
CAediting_854345chr11_118096520_+SINEAluAluJb
CAediting_854346chr11_118096525_+SINEAluAluJb
CAediting_854347chr11_118096528_+SINEAluAluJb
CAediting_854348chr11_118096529_+SINEAluAluJb
CAediting_854349chr11_118096534_+SINEAluAluJb
CAediting_854350chr11_118096537_+SINEAluAluJb
CAediting_854351chr11_118096550_+SINEAluAluJb
CAediting_854352chr11_118096599_+SINEAluAluJb
CAediting_854353chr11_118096600_+SINEAluAluJb
CAediting_854354chr11_118096607_+SINEAluAluJb
CAediting_854355chr11_118096608_+SINEAluAluJb
CAediting_854356chr11_118096639_+SINEAluAluJb
CAediting_854357chr11_118096640_+SINEAluAluJb
CAediting_854358chr11_118096655_+SINEAluAluJb
CAediting_854359chr11_118096665_+SINEAluAluJb
CAediting_854360chr11_118096671_+SINEAluAluJb
CAediting_854361chr11_118096693_+SINEAluAluJb
CAediting_854362chr11_118096694_+SINEAluAluJb
CAediting_854363chr11_118096711_+SINEAluAluJb
CAediting_854364chr11_118096714_+SINEAluAluJb
CAediting_854365chr11_118096735_+SINEAluAluJb
CAediting_854366chr11_118097824_+SINEAluAluSq2
CAediting_854367chr11_118097827_+SINEAluAluSq2
CAediting_854368chr11_118097840_+SINEAluAluSq2
CAediting_854369chr11_118097910_+SINEAluAluSq2
CAediting_854370chr11_118097920_+SINEAluAluSq2
CAediting_854371chr11_118097953_+SINEAluAluSq2
CAediting_854372chr11_118097959_+SINEAluAluSq2
CAediting_854373chr11_118097979_+SINEAluAluSq2
CAediting_854374chr11_118098032_+SINEAluAluSq2
CAediting_854375chr11_118101497_+SINEAluAluJo
CAediting_854376chr11_118101500_+SINEAluAluJo
CAediting_854377chr11_118101524_+SINEAluAluJo
CAediting_854378chr11_118101532_+SINEAluAluJo
CAediting_854379chr11_118101553_+SINEAluAluJo
CAediting_854380chr11_118101567_+SINEAluAluJo
CAediting_854381chr11_118101573_+SINEAluAluJo
CAediting_854382chr11_118101574_+SINEAluAluJo
CAediting_854383chr11_118101577_+SINEAluAluJo
CAediting_854384chr11_118101578_+SINEAluAluJo
CAediting_854385chr11_118101591_+SINEAluAluJo
CAediting_854386chr11_118101599_+SINEAluAluJo
CAediting_854387chr11_118101600_+SINEAluAluJo
CAediting_854388chr11_118101607_+SINEAluAluJo
CAediting_854389chr11_118101613_+SINEAluAluJo
CAediting_854390chr11_118101615_+SINEAluAluJo
CAediting_854391chr11_118101621_+SINEAluAluJo
CAediting_854392chr11_118101623_+SINEAluAluJo
CAediting_854393chr11_118101688_+SINEAluAluJo
CAediting_854394chr11_118101690_+SINEAluAluJo
CAediting_854395chr11_118101694_+SINEAluAluJo
CAediting_854396chr11_118101713_+SINEAluAluJo
CAediting_854397chr11_118101714_+SINEAluAluJo
CAediting_854398chr11_118101715_+SINEAluAluJo
CAediting_854399chr11_118101717_+SINEAluAluJo
CAediting_854400chr11_118101734_+SINEAluAluJo
CAediting_854401chr11_118101739_+SINEAluAluJo
CAediting_854402chr11_118101740_+SINEAluAluJo
CAediting_854403chr11_118101741_+SINEAluAluJo
CAediting_854404chr11_118101753_+SINEAluAluJo
CAediting_854405chr11_118101763_+SINEAluAluJo
CAediting_854406chr11_118102431_+SINEAluAluSx
CAediting_854407chr11_118102444_+SINEAluAluSx
CAediting_854408chr11_118102452_+SINEAluAluSx
CAediting_854409chr11_118102453_+SINEAluAluSx
CAediting_854410chr11_118102501_+SINEAluAluSx
CAediting_854411chr11_118102517_+SINEAluAluSx
CAediting_854412chr11_118102562_+SINEAluAluSx
CAediting_854413chr11_118102588_+SINEAluAluSx
CAediting_854414chr11_118102589_+SINEAluAluSx
CAediting_854415chr11_118102594_+SINEAluAluSx
CAediting_854416chr11_118102598_+SINEAluAluSx
CAediting_854417chr11_118102602_+SINEAluAluSx
CAediting_854418chr11_118102624_+SINEAluAluSx
CAediting_854419chr11_118102628_+SINEAluAluSx
CAediting_854420chr11_118102629_+SINEAluAluSx
CAediting_854421chr11_118102630_+SINEAluAluSx
CAediting_854422chr11_118106546_+SINEAluAluSx
CAediting_854423chr11_118106565_+SINEAluAluSx
CAediting_854424chr11_118106578_+SINEAluAluSx
CAediting_854425chr11_118106659_+SINEAluAluSx
CAediting_854426chr11_118110422_+SINEAluAluSq2
CAediting_854427chr11_118110514_+SINEAluAluSq2
CAediting_854428chr11_118110665_+SINEAluAluSq2
CAediting_854429chr11_118115556_+SINEAluAluSz
CAediting_854430chr11_118115564_+SINEAluAluSz
CAediting_854431chr11_118115565_+SINEAluAluSz
CAediting_854432chr11_118115610_+SINEAluAluSz
CAediting_854433chr11_118115614_+SINEAluAluSz
CAediting_854434chr11_118115618_+SINEAluAluSz
CAediting_854435chr11_118115619_+SINEAluAluSz
CAediting_854436chr11_118115624_+SINEAluAluSz
CAediting_854437chr11_118115649_+SINEAluAluSz
CAediting_854438chr11_118115655_+SINEAluAluSz
CAediting_854439chr11_118115658_+SINEAluAluSz
CAediting_854440chr11_118115667_+SINEAluAluSz
CAediting_854441chr11_118115672_+SINEAluAluSz
CAediting_854442chr11_118115676_+SINEAluAluSz
CAediting_854443chr11_118115702_+SINEAluAluSz
CAediting_854444chr11_118115703_+SINEAluAluSz
CAediting_854445chr11_118115735_+SINEAluAluSz
CAediting_854446chr11_118115755_+SINEAluAluSz
CAediting_854447chr11_118115768_+SINEAluAluSz
CAediting_854448chr11_118115810_+SINEAluAluSz
CAediting_854449chr11_118115811_+SINEAluAluSz
CAediting_854450chr11_118116745_+SINEAluAluSx1
CAediting_854451chr11_118116762_+SINEAluAluSx1
CAediting_854452chr11_118116824_+SINEAluAluSx1
CAediting_854453chr11_118116829_+SINEAluAluSx1
CAediting_854454chr11_118116851_+SINEAluAluSx1
CAediting_854455chr11_118116972_+SINEAluAluSx1
CAediting_854456chr11_118116985_+SINEAluAluSx1
CAediting_854457chr11_118121452_+SINEAluAluSz
CAediting_854458chr11_118121459_+SINEAluAluSz
CAediting_854459chr11_118121498_+SINEAluAluSz
CAediting_854460chr11_118121524_+SINEAluAluSz
CAediting_854461chr11_118121525_+SINEAluAluSz
CAediting_854462chr11_118121539_+SINEAluAluSz
CAediting_854463chr11_118121542_+SINEAluAluSz
CAediting_854464chr11_118121568_+SINEAluAluSz
CAediting_854465chr11_118121593_+SINEAluAluSz
CAediting_854466chr11_118121594_+SINEAluAluSz

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RNA A-to-I editing events in the alternative splicing sites for TMPRSS4

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
IRCAediting_854376chr11_118101500_+118101500:1181015223SS0+20iAGGTCTTGCTCTCTTTCCCAGGC-6.91GGGTCTTGCTCTCTTTCCCAGGC-6.62

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000137648.15.TMPRSS4.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000137648.15.TMPRSS4.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TMPRSS4

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
ESCA.CAediting_854378.ENSG00000137648.TMPRSS4.png
Soverview
STAD.CAediting_854389.ENSG00000137648.TMPRSS4.png
Soverview

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Protein coding region RNA A-to-I editings for TMPRSS4

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TMPRSS4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_854460chr11_118121524_+ENSG00000137648.15ENST00000534111hsa-miR-34a-3p1181215201181215267mer-m8118121505118121527151.00-10.28
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548ae-3p1181215231181215297mer-m8118121510118121530141.00-10.65
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548ae-3p1181215231181215297mer-m8118121510118121530141.00-10.65
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548ah-3p1181215231181215297mer-m8118121508118121530143.00-11.29
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548aj-3p1181215231181215297mer-m8118121510118121530141.00-8.54
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548aj-3p1181215231181215297mer-m8118121510118121530141.00-8.54
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548am-3p1181215231181215297mer-m8118121508118121530143.00-10.65
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548aq-3p1181215231181215297mer-m8118121509118121530141.00-10.72
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548j-3p1181215231181215297mer-m8118121510118121530141.00-10.65
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548x-3p1181215231181215297mer-m8118121511118121530141.00-8.54
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-548x-3p1181215231181215297mer-m8118121511118121530141.00-8.54
CAediting_854461chr11_118121525_+ENSG00000137648.15ENST00000534111hsa-miR-7844-5p1181215211181215277mer-m8118121507118121528160.00-19.14
CAediting_854457chr11_118121452_+ENSG00000137648.15ENST00000534111hsa-miR-1247-3p1181214471181214537mer-m8118121433118121454157.00-23.38
CAediting_854457chr11_118121452_+ENSG00000137648.15ENST00000534111hsa-miR-6746-5p1181214461181214516mer118121431118121452142.00-32.62
CAediting_854458chr11_118121459_+ENSG00000137648.15ENST00000534111hsa-miR-3622a-3p1181214551181214628mer-1a118121440118121462146.00-18.21
CAediting_854458chr11_118121459_+ENSG00000137648.15ENST00000534111hsa-miR-3622b-3p1181214551181214628mer-1a118121442118121462147.00-19.15
CAediting_854458chr11_118121459_+ENSG00000137648.15ENST00000534111hsa-miR-45391181214531181214586mer118121440118121459145.00-20.67
CAediting_854466chr11_118121594_+ENSG00000137648.15ENST00000534111hsa-miR-3622a-3p1181215901181215978mer-1a118121576118121597144.00-13.51
CAediting_854466chr11_118121594_+ENSG00000137648.15ENST00000534111hsa-miR-3622b-3p1181215901181215978mer-1a118121577118121597153.00-18.32
CAediting_854466chr11_118121594_+ENSG00000137648.15ENST00000534111hsa-miR-544b1181215881181215947mer-m8118121574118121595162.00-20.61
CAediting_854466chr11_118121594_+ENSG00000137648.15ENST00000534111hsa-miR-7162-3p1181215871181215937mer-m8118121575118121594143.00-16.60
CAediting_854464chr11_118121568_+ENSG00000137648.15ENST00000534111hsa-miR-15381181215651181215717mer-m8118121551118121572149.00-25.41
CAediting_854464chr11_118121568_+ENSG00000137648.15ENST00000534111hsa-miR-4745-3p1181215651181215717mer-m8118121549118121572149.00-30.00

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_854464chr11_118121568_+ENSG00000137648.15ENST00000534111hsa-miR-1234-3p1181215661181215727mer-m8118121551118121573155-23.69
CAediting_854464chr11_118121568_+ENSG00000137648.15ENST00000534111hsa-miR-3190-5p1181215621181215687mer-m8118121551118121569148-20.6
CAediting_854458chr11_118121459_+ENSG00000137648.15ENST00000534111hsa-miR-3614-5p1181214561181214627mer-1a118121440118121462152-23.09
CAediting_854463chr11_118121542_+ENSG00000137648.15ENST00000534111hsa-miR-3675-3p1181215401181215467mer-m8118121524118121547151-12.71
CAediting_854459chr11_118121498_+ENSG00000137648.15ENST00000534111hsa-miR-380-3p1181214941181215007mer-m8118121481118121501146-10.85
CAediting_854463chr11_118121542_+ENSG00000137648.15ENST00000534111hsa-miR-4684-5p1181215391181215457mer-m8118121524118121546155-13.1
CAediting_854457chr11_118121452_+ENSG00000137648.15ENST00000534111hsa-miR-490-3p1181214491181214557mer-m8118121434118121456146-16.16
CAediting_854464chr11_118121568_+ENSG00000137648.15ENST00000534111hsa-miR-548s1181215611181215677mer-m8118121546118121568149-15.9
CAediting_854457chr11_118121452_+ENSG00000137648.15ENST00000534111hsa-miR-6779-5p1181214451181214517mer-m8118121434118121452144-26.14
CAediting_854464chr11_118121568_+ENSG00000137648.15ENST00000534111hsa-miR-7107-5p1181215661181215727mer-m8118121552118121573147-22.4

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000616579hsa-miR-200b-3p1181180321181180387mer-m8118118018118118039140-11.98
CAediting_688080chr9_63819626_+ENSG00000137648.15ENST00000616579hsa-miR-4477b1181191071181191148mer-1a118119093118119114159-13.22
CAediting_980496chr14_31014685_-ENSG00000137648.15ENST00000534111hsa-miR-624-3p1181217561181217638mer-1a118121741118121763150-12.98
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000534111hsa-miR-200b-3p1181180321181180387mer-m8118118018118118039140-11.98
CAediting_688080chr9_63819626_+ENSG00000137648.15ENST00000534111hsa-miR-4477b1181191071181191148mer-1a118119093118119114159-13.22
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000519236hsa-miR-200b-3p1181180321181180387mer-m8118118018118118039140-11.98
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000522307hsa-miR-200b-3p1181180321181180387mer-m8118118018118118039140-11.98
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000523251hsa-miR-200b-3p1181180321181180387mer-m8118118018118118039140-11.98
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000517483hsa-miR-200b-3p1181180321181180387mer-m8118118018118118039140-11.98
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000522824hsa-miR-200b-3p1181180321181180387mer-m8118118018118118039140-11.98
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000524218hsa-miR-200b-3p1181180321181180387mer-m8118118018118118039140-11.98
CAediting_1229414chr17_67471546_+ENSG00000137648.15ENST00000534111hsa-miR-548aa1181201011181201077mer-m8118120082118120108154-14.31
CAediting_396018chr5_1062918_-ENSG00000137648.15ENST00000534111hsa-miR-46351181215881181215947mer-m8118121575118121595154-16.01
CAediting_1054808chr15_66496985_-ENSG00000137648.15ENST00000517544hsa-miR-45121181079061181079127mer-m8118107894118107913156-23.95
CAediting_1368054chr19_46709310_-ENSG00000137648.15ENST00000517544hsa-miR-320e1181079411181079488mer-1a118107932118107948149-15.04

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_573001chr7_92204086_-ENSG00000137648.15ENST00000534111hsa-miR-1285-5p1181196291181196357mer-m8118119614118119636142-13.06
CAediting_393chr1_1167164_+ENSG00000137648.15ENST00000534111hsa-miR-200b-3p1181200951181201017mer-m8118120081118120102154-14.21
CAediting_1306324chr19_13836464_-ENSG00000137648.15ENST00000534111hsa-miR-27a-3p1181191761181191827mer-m8118119162118119183142-13.09
CAediting_1306324chr19_13836464_-ENSG00000137648.15ENST00000534111hsa-miR-27a-3p1181202651181202717mer-1a118120251118120271150-20.19
CAediting_396018chr5_1062918_-ENSG00000137648.15ENST00000534111hsa-miR-46351181201411181201477mer-m8118120128118120148154-11.85
CAediting_414656chr5_72878640_+ENSG00000137648.15ENST00000534111hsa-miR-4804-3p1181196891181196957mer-m8118119672118119696146-15.24
CAediting_228905chr2_188297554_+ENSG00000137648.15ENST00000534111hsa-miR-561-3p1181185011181185066mer118118485118118507145-13.43

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TMPRSS4

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TMPRSS4

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
STADCAediting_854342chr11_118090698_+..0.02074264953850360.298010142982871..
STADCAediting_854389chr11_118101613_+0.0002649767761367990.298541018158625....
STADCAediting_854393chr11_118101688_+0.01916031825192890.198490849095681....
ESCACAediting_854413chr11_118102588_+0.03932144374692810.264610156546824....
ESCACAediting_854414chr11_118102589_+0.01045683754120610.322971852179308....
ESCACAediting_854415chr11_118102594_+0.005274057276111160.337133356058528....
ESCACAediting_854416chr11_118102598_+0.004459476907252680.388191399244034....

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Relation with cancer stages for TMPRSS4

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCApathologic_stageCAediting_854393chr11_118101688_+0.04922977519315740.20793230417369

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Relation with survival for TMPRSS4

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
STADCAediting_854393chr11_118101688_+0.02191787064659540.04535640.111521
STADCAediting_854404chr11_118101753_+0.0006489530926208080.019585792.0981

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RelatedDrugs for TMPRSS4

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TMPRSS4

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
TMPRSS4C4755252Autosomal recessive cerebral atrophy1ORPHANET