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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TDRD1 (CAeditome ID:56165)

Gene summary for TDRD1

check button Gene summary
Gene informationGene symbol

TDRD1

Gene ID

56165

Gene nametudor domain containing 1
SynonymsCT41.1
Cytomap

10q25.3

Type of geneprotein-coding
Descriptiontudor domain-containing protein 1cancer/testis antigen 41.1testicular tissue protein Li 193
Modification date20210529
UniProtAcc

Q9BXT4

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for TDRD1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000095627.8

check button RNA A-to-I editing events in Cancer.
CAediting_784049(114228829, +), CAediting_784050(114228884, +), CAediting_784051(114228897, +), CAediting_784052(114228898, +), CAediting_784053(114228923, +), CAediting_784054(114228924, +), CAediting_784055(114228926, +), CAediting_784056(114228928, +), CAediting_784057(114228954, +), CAediting_784058(114228956, +), CAediting_784059(114228972, +), CAediting_784060(114228989, +), CAediting_784061(114228992, +), CAediting_784062(114229008, +), CAediting_784063(114229011, +), CAediting_784064(114229032, +), CAediting_784065(114229044, +), CAediting_784066(114229588, +), CAediting_784067(114229623, +), CAediting_784068(114229628, +), CAediting_784069(114229629, +), CAediting_784070(114229652, +), CAediting_784071(114229661, +), CAediting_784072(114229666, +), CAediting_784073(114229678, +), CAediting_784074(114229688, +), CAediting_784075(114229690, +), CAediting_784076(114229696, +), CAediting_784077(114229706, +), CAediting_784078(114229852, +), CAediting_784079(114229856, +), CAediting_784080(114229874, +), CAediting_784081(114229900, +), CAediting_784082(114229905, +), CAediting_784083(114229908, +), CAediting_784084(114229910, +), CAediting_784085(114229957, +), CAediting_784086(114230013, +), CAediting_784087(114230016, +), CAediting_784088(114230030, +), CAediting_784089(114230038, +), CAediting_784090(114230042, +), CAediting_784091(114230093, +), CAediting_784092(114230105, +), CAediting_784093(114230114, +), CAediting_784094(114230770, +), CAediting_784095(114230771, +), CAediting_784096(114230799, +), CAediting_784097(114230807, +), CAediting_784098(114230808, +), CAediting_784099(114230816, +), CAediting_784100(114230825, +), CAediting_784101(114230831, +), CAediting_784102(114230855, +), CAediting_784103(114230858, +), CAediting_784104(114230878, +), CAediting_784105(114230879, +), CAediting_784106(114230889, +), CAediting_784107(114230920, +), CAediting_784108(114230924, +), CAediting_784109(114230929, +), CAediting_784110(114230940, +), CAediting_784111(114230952, +), CAediting_784112(114230963, +), CAediting_784113(114230969, +), CAediting_784114(114230973, +), CAediting_784115(114230987, +), CAediting_784116(114230988, +), CAediting_784117(114230995, +), CAediting_784118(114231000, +), CAediting_784119(114231001, +), CAediting_784120(114231012, +), CAediting_784121(114231017, +), CAediting_784122(114231019, +), CAediting_784123(114231027, +), CAediting_784124(114231032, +), CAediting_784125(114231037, +), CAediting_784126(114231046, +), CAediting_784127(114231047, +), CAediting_784128(114231049, +), CAediting_784129(114231051, +), CAediting_784130(114231868, +), CAediting_784131(114231873, +), CAediting_784132(114231887, +), CAediting_784133(114231889, +), CAediting_784134(114231893, +), CAediting_784135(114231902, +), CAediting_784136(114231908, +), CAediting_784137(114231953, +), CAediting_784138(114232184, +),

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RNA editing positional annotations for TDRD1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_784049chr10_114228829_+intronic
CAediting_784050chr10_114228884_+intronic
CAediting_784051chr10_114228897_+intronic
CAediting_784052chr10_114228898_+intronic
CAediting_784053chr10_114228923_+intronic
CAediting_784054chr10_114228924_+intronic
CAediting_784055chr10_114228926_+intronic
CAediting_784056chr10_114228928_+intronic
CAediting_784057chr10_114228954_+intronic
CAediting_784058chr10_114228956_+intronic
CAediting_784059chr10_114228972_+intronic
CAediting_784060chr10_114228989_+intronic
CAediting_784061chr10_114228992_+intronic
CAediting_784062chr10_114229008_+intronic
CAediting_784063chr10_114229011_+intronic
CAediting_784064chr10_114229032_+intronic
CAediting_784065chr10_114229044_+intronic
CAediting_784066chr10_114229588_+intronic
CAediting_784067chr10_114229623_+intronic
CAediting_784068chr10_114229628_+intronic
CAediting_784069chr10_114229629_+intronic
CAediting_784070chr10_114229652_+intronic
CAediting_784071chr10_114229661_+intronic
CAediting_784072chr10_114229666_+intronic
CAediting_784073chr10_114229678_+intronic
CAediting_784074chr10_114229688_+intronic
CAediting_784075chr10_114229690_+intronic
CAediting_784076chr10_114229696_+intronic
CAediting_784077chr10_114229706_+intronic
CAediting_784078chr10_114229852_+intronic
CAediting_784079chr10_114229856_+intronic
CAediting_784080chr10_114229874_+intronic
CAediting_784081chr10_114229900_+intronic
CAediting_784082chr10_114229905_+intronic
CAediting_784083chr10_114229908_+intronic
CAediting_784084chr10_114229910_+intronic
CAediting_784085chr10_114229957_+intronic
CAediting_784086chr10_114230013_+intronic
CAediting_784087chr10_114230016_+intronic
CAediting_784088chr10_114230030_+intronic
CAediting_784089chr10_114230038_+intronic
CAediting_784090chr10_114230042_+intronic
CAediting_784091chr10_114230093_+intronic
CAediting_784092chr10_114230105_+intronic
CAediting_784093chr10_114230114_+intronic
CAediting_784094chr10_114230770_+intronic
CAediting_784095chr10_114230771_+intronic
CAediting_784096chr10_114230799_+intronic
CAediting_784097chr10_114230807_+intronic
CAediting_784098chr10_114230808_+intronic
CAediting_784099chr10_114230816_+intronic
CAediting_784100chr10_114230825_+intronic
CAediting_784101chr10_114230831_+intronic
CAediting_784102chr10_114230855_+intronic
CAediting_784103chr10_114230858_+intronic
CAediting_784104chr10_114230878_+intronic
CAediting_784105chr10_114230879_+intronic
CAediting_784106chr10_114230889_+intronic
CAediting_784107chr10_114230920_+intronic
CAediting_784108chr10_114230924_+intronic
CAediting_784109chr10_114230929_+intronic
CAediting_784110chr10_114230940_+intronic
CAediting_784111chr10_114230952_+intronic
CAediting_784112chr10_114230963_+intronic
CAediting_784113chr10_114230969_+intronic
CAediting_784114chr10_114230973_+intronic
CAediting_784115chr10_114230987_+intronic
CAediting_784116chr10_114230988_+intronic
CAediting_784117chr10_114230995_+intronic
CAediting_784118chr10_114231000_+intronic
CAediting_784119chr10_114231001_+intronic
CAediting_784120chr10_114231012_+intronic
CAediting_784121chr10_114231017_+intronic
CAediting_784122chr10_114231019_+intronic
CAediting_784123chr10_114231027_+intronic
CAediting_784124chr10_114231032_+intronic
CAediting_784125chr10_114231037_+intronic
CAediting_784126chr10_114231046_+intronic
CAediting_784127chr10_114231047_+intronic
CAediting_784128chr10_114231049_+intronic
CAediting_784129chr10_114231051_+intronic
CAediting_784130chr10_114231868_+UTR3
CAediting_784131chr10_114231873_+UTR3
CAediting_784132chr10_114231887_+UTR3
CAediting_784133chr10_114231889_+UTR3
CAediting_784134chr10_114231893_+UTR3
CAediting_784135chr10_114231902_+UTR3
CAediting_784136chr10_114231908_+UTR3
CAediting_784137chr10_114231953_+UTR3
CAediting_784138chr10_114232184_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_784049chr10_114228829_+SINEAluAluSx
CAediting_784050chr10_114228884_+SINEAluAluSx
CAediting_784051chr10_114228897_+SINEAluAluSx
CAediting_784052chr10_114228898_+SINEAluAluSx
CAediting_784053chr10_114228923_+SINEAluAluSx
CAediting_784054chr10_114228924_+SINEAluAluSx
CAediting_784055chr10_114228926_+SINEAluAluSx
CAediting_784056chr10_114228928_+SINEAluAluSx
CAediting_784057chr10_114228954_+SINEAluAluSx
CAediting_784058chr10_114228956_+SINEAluAluSx
CAediting_784059chr10_114228972_+SINEAluAluSx
CAediting_784060chr10_114228989_+SINEAluAluSx
CAediting_784061chr10_114228992_+SINEAluAluSx
CAediting_784062chr10_114229008_+SINEAluAluSx
CAediting_784063chr10_114229011_+SINEAluAluSx
CAediting_784064chr10_114229032_+SINEAluAluSx
CAediting_784065chr10_114229044_+SINEAluAluSx
CAediting_784066chr10_114229588_+SINEAluAluYh3
CAediting_784067chr10_114229623_+SINEAluAluYh3
CAediting_784068chr10_114229628_+SINEAluAluYh3
CAediting_784069chr10_114229629_+SINEAluAluYh3
CAediting_784070chr10_114229652_+SINEAluAluYh3
CAediting_784071chr10_114229661_+SINEAluAluYh3
CAediting_784072chr10_114229666_+SINEAluAluYh3
CAediting_784073chr10_114229678_+SINEAluAluYh3
CAediting_784074chr10_114229688_+SINEAluAluYh3
CAediting_784075chr10_114229690_+SINEAluAluYh3
CAediting_784076chr10_114229696_+SINEAluAluYh3
CAediting_784077chr10_114229706_+SINEAluAluYh3
CAediting_784078chr10_114229852_+SINEAluAluY
CAediting_784079chr10_114229856_+SINEAluAluY
CAediting_784080chr10_114229874_+SINEAluAluY
CAediting_784081chr10_114229900_+SINEAluAluY
CAediting_784082chr10_114229905_+SINEAluAluY
CAediting_784083chr10_114229908_+SINEAluAluY
CAediting_784084chr10_114229910_+SINEAluAluY
CAediting_784085chr10_114229957_+SINEAluAluY
CAediting_784086chr10_114230013_+SINEAluAluY
CAediting_784087chr10_114230016_+SINEAluAluY
CAediting_784088chr10_114230030_+SINEAluAluY
CAediting_784089chr10_114230038_+SINEAluAluY
CAediting_784090chr10_114230042_+SINEAluAluY
CAediting_784091chr10_114230093_+SINEAluAluY
CAediting_784092chr10_114230105_+SINEAluAluY
CAediting_784093chr10_114230114_+SINEAluAluY
CAediting_784096chr10_114230799_+SINEAluAluSx
CAediting_784097chr10_114230807_+SINEAluAluSx
CAediting_784098chr10_114230808_+SINEAluAluSx
CAediting_784099chr10_114230816_+SINEAluAluSx
CAediting_784100chr10_114230825_+SINEAluAluSx
CAediting_784101chr10_114230831_+SINEAluAluSx
CAediting_784102chr10_114230855_+SINEAluAluSx
CAediting_784103chr10_114230858_+SINEAluAluSx
CAediting_784104chr10_114230878_+SINEAluAluSx
CAediting_784105chr10_114230879_+SINEAluAluSx
CAediting_784106chr10_114230889_+SINEAluAluSx
CAediting_784107chr10_114230920_+SINEAluAluSx
CAediting_784108chr10_114230924_+SINEAluAluSx
CAediting_784109chr10_114230929_+SINEAluAluSx
CAediting_784110chr10_114230940_+SINEAluAluSx
CAediting_784111chr10_114230952_+SINEAluAluSx
CAediting_784112chr10_114230963_+SINEAluAluSx
CAediting_784113chr10_114230969_+SINEAluAluSx
CAediting_784114chr10_114230973_+SINEAluAluSx
CAediting_784115chr10_114230987_+SINEAluAluSx
CAediting_784116chr10_114230988_+SINEAluAluSx
CAediting_784117chr10_114230995_+SINEAluAluSx
CAediting_784118chr10_114231000_+SINEAluAluSx
CAediting_784119chr10_114231001_+SINEAluAluSx
CAediting_784120chr10_114231012_+SINEAluAluSx
CAediting_784121chr10_114231017_+SINEAluAluSx
CAediting_784122chr10_114231019_+SINEAluAluSx
CAediting_784123chr10_114231027_+SINEAluAluSx
CAediting_784124chr10_114231032_+SINEAluAluSx
CAediting_784125chr10_114231037_+SINEAluAluSx
CAediting_784126chr10_114231046_+SINEAluAluSx
CAediting_784127chr10_114231047_+SINEAluAluSx
CAediting_784128chr10_114231049_+SINEAluAluSx
CAediting_784129chr10_114231051_+SINEAluAluSx
CAediting_784130chr10_114231868_+SINEAluFRAM
CAediting_784131chr10_114231873_+SINEAluFRAM
CAediting_784132chr10_114231887_+SINEAluFRAM
CAediting_784133chr10_114231889_+SINEAluFRAM
CAediting_784134chr10_114231893_+SINEAluFRAM
CAediting_784135chr10_114231902_+SINEAluFRAM
CAediting_784136chr10_114231908_+SINEAluFRAM
CAediting_784137chr10_114231953_+SINEAluFRAM

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RNA A-to-I editing events in the alternative splicing sites for TDRD1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000095627.8.TDRD1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000095627.8.TDRD1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TDRD1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TDRD1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TDRD1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_784132chr10_114231887_+ENSG00000095627.8ENST00000251864hsa-miR-4772-3p1142318831142318897mer-m8114231865114231890158.00-23.19
CAediting_784130chr10_114231868_+ENSG00000095627.8ENST00000251864hsa-miR-5699-5p1142318641142318707mer-m8114231850114231871140.00-15.22
CAediting_784130chr10_114231868_+ENSG00000095627.8ENST00000251864hsa-miR-6814-5p1142318621142318687mer-m8114231848114231869145.00-25.41
CAediting_784130chr10_114231868_+ENSG00000095627.8ENST00000251864hsa-miR-874-5p1142318651142318728mer-1a114231850114231872142.00-20.95
CAediting_784134chr10_114231893_+ENSG00000095627.8ENST00000251864hsa-miR-36511142318911142318977mer-m8114231872114231898146.00-20.75
CAediting_784135chr10_114231902_+ENSG00000095627.8ENST00000251864hsa-miR-593-5p1142319001142319078mer-1a114231884114231907155.00-22.39
CAediting_784135chr10_114231902_+ENSG00000095627.8ENST00000251864hsa-miR-9851-3p1142319001142319078mer-1a114231887114231907154.00-20.55
CAediting_784138chr10_114232184_+ENSG00000095627.8ENST00000251864hsa-miR-5006-3p1142321821142321876mer114232168114232188144.00-20.05
CAediting_784138chr10_114232184_+ENSG00000095627.8ENST00000251864hsa-miR-642a-5p1142321801142321878mer-1a114232165114232187157.00-22.34
CAediting_784138chr10_114232184_+ENSG00000095627.8ENST00000251864hsa-miR-642b-5p1142321821142321887mer-m8114232167114232189167.00-26.68
CAediting_784138chr10_114232184_+ENSG00000095627.8ENST00000251864hsa-miR-6892-3p1142321791142321868mer-1a114232166114232186145.00-18.63

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_784131chr10_114231873_+ENSG00000095627.8ENST00000251864hsa-miR-31761142318671142318737mer-m8114231852114231874147-22.86
CAediting_784138chr10_114232184_+ENSG00000095627.8ENST00000251864hsa-miR-320a-5p1142321791142321868mer-1a114232165114232186141-15.5
CAediting_784131chr10_114231873_+ENSG00000095627.8ENST00000251864hsa-miR-3922-3p1142318671142318737mer-m8114231854114231874150-19.16
CAediting_784136chr10_114231908_+ENSG00000095627.8ENST00000251864hsa-miR-56931142319041142319107mer-m8114231890114231911153-23.29
CAediting_784138chr10_114232184_+ENSG00000095627.8ENST00000251864hsa-miR-6868-3p1142321801142321878mer-1a114232167114232187146-15.58
CAediting_784130chr10_114231868_+ENSG00000095627.8ENST00000251864hsa-miR-6878-3p1142318661142318727mer-m8114231847114231873146-28.27
CAediting_784131chr10_114231873_+ENSG00000095627.8ENST00000251864hsa-miR-6878-3p1142318661142318727mer-m8114231847114231873146-28.27
CAediting_784134chr10_114231893_+ENSG00000095627.8ENST00000251864hsa-miR-77051142318911142318977mer-m8114231878114231898149-14.23
CAediting_784136chr10_114231908_+ENSG00000095627.8ENST00000251864hsa-miR-891a-3p1142319021142319087mer-m8114231883114231909150-22.75

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TDRD1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TDRD1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
PRADCAediting_784074chr10_114229688_+0.04414762166272060.198758301274844....
PRADCAediting_784091chr10_114230093_+0.0002392673684565830.372176078902788....
PRADCAediting_784098chr10_114230808_+..0.02736186761103180.173909924412787..
PRADCAediting_784104chr10_114230878_+..0.01026309738412260.188302580223854..
PRADCAediting_784105chr10_114230879_+..0.004564134801423790.2178169020851..
BRCACAediting_784108chr10_114230924_+0.006410988380159480.356993180110069....

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Relation with cancer stages for TDRD1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for TDRD1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for TDRD1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TDRD1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource