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Editing gene: BCAP29 (CAeditome ID:55973)

Gene summary for BCAP29

Gene summary

Gene information	Gene symbol	BCAP29
	Gene ID	55973
	Gene name	B cell receptor associated protein 29
	Synonyms	BAP29
	Cytomap	7q22.3
	Type of gene	protein-coding
	Description	B-cell receptor-associated protein 29BCR-associated protein 29
	Modification date	20210518
	UniProtAcc	Q9UHQ4
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for BCAP29

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000075790.9

RNA A-to-I editing events in Cancer.

CAediting_594053(107585870, +), CAediting_594054(107585871, +), CAediting_594055(107585880, +), CAediting_594056(107586778, +), CAediting_594057(107586779, +), CAediting_594058(107586792, +), CAediting_594059(107586853, +), CAediting_594060(107586895, +), CAediting_594061(107586911, +), CAediting_594062(107586950, +), CAediting_594063(107586966, +), CAediting_594064(107586991, +), CAediting_594065(107587014, +), CAediting_594066(107590576, +), CAediting_594067(107590672, +), CAediting_594068(107590745, +), CAediting_594069(107597296, +), CAediting_594070(107597297, +), CAediting_594071(107597311, +), CAediting_594072(107598794, +), CAediting_594073(107598800, +), CAediting_594074(107598862, +), CAediting_594075(107598870, +), CAediting_594076(107603705, +), CAediting_594077(107603745, +), CAediting_594078(107603772, +), CAediting_594079(107603781, +), CAediting_594080(107607169, +), CAediting_594081(107607180, +), CAediting_594082(107607196, +), CAediting_594083(107607197, +), CAediting_594084(107607206, +), CAediting_594085(107607299, +), CAediting_594086(107607301, +), CAediting_594087(107607304, +), CAediting_594088(107607701, +), CAediting_594089(107607900, +), CAediting_594090(107611289, +), CAediting_594091(107611339, +), CAediting_594092(107615305, +), CAediting_594093(107615307, +), CAediting_594094(107615347, +), CAediting_594095(107615348, +), CAediting_594096(107615364, +), CAediting_594097(107615412, +), CAediting_594098(107615475, +), CAediting_594099(107615476, +), CAediting_594100(107616758, +), CAediting_594101(107616762, +), CAediting_594102(107616770, +), CAediting_594103(107616778, +), CAediting_594104(107616782, +), CAediting_594105(107616784, +), CAediting_594106(107616794, +), CAediting_594107(107616802, +), CAediting_594108(107616808, +), CAediting_594109(107616825, +), CAediting_594110(107616838, +), CAediting_594111(107616869, +), CAediting_594112(107616881, +), CAediting_594113(107616904, +), CAediting_594114(107616905, +), CAediting_594115(107616913, +), CAediting_594116(107616919, +), CAediting_594117(107616922, +), CAediting_594118(107616939, +), CAediting_594119(107617040, +),

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RNA editing positional annotations for BCAP29 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_594053	chr7_107585870_+	ncRNA_intronic
CAediting_594054	chr7_107585871_+	ncRNA_intronic
CAediting_594055	chr7_107585880_+	ncRNA_intronic
CAediting_594056	chr7_107586778_+	ncRNA_intronic
CAediting_594057	chr7_107586779_+	ncRNA_intronic
CAediting_594058	chr7_107586792_+	ncRNA_intronic
CAediting_594059	chr7_107586853_+	ncRNA_intronic
CAediting_594060	chr7_107586895_+	ncRNA_intronic
CAediting_594061	chr7_107586911_+	ncRNA_intronic
CAediting_594062	chr7_107586950_+	ncRNA_intronic
CAediting_594063	chr7_107586966_+	ncRNA_intronic
CAediting_594064	chr7_107586991_+	ncRNA_intronic
CAediting_594065	chr7_107587014_+	ncRNA_intronic
CAediting_594066	chr7_107590576_+	ncRNA_intronic
CAediting_594067	chr7_107590672_+	ncRNA_intronic
CAediting_594068	chr7_107590745_+	ncRNA_intronic
CAediting_594069	chr7_107597296_+	ncRNA_intronic
CAediting_594070	chr7_107597297_+	ncRNA_intronic
CAediting_594071	chr7_107597311_+	ncRNA_intronic
CAediting_594072	chr7_107598794_+	ncRNA_intronic
CAediting_594073	chr7_107598800_+	ncRNA_intronic
CAediting_594074	chr7_107598862_+	ncRNA_intronic
CAediting_594075	chr7_107598870_+	ncRNA_intronic
CAediting_594076	chr7_107603705_+	ncRNA_intronic
CAediting_594077	chr7_107603745_+	ncRNA_intronic
CAediting_594078	chr7_107603772_+	ncRNA_intronic
CAediting_594079	chr7_107603781_+	ncRNA_intronic
CAediting_594080	chr7_107607169_+	ncRNA_intronic
CAediting_594081	chr7_107607180_+	ncRNA_intronic
CAediting_594082	chr7_107607196_+	ncRNA_intronic
CAediting_594083	chr7_107607197_+	ncRNA_intronic
CAediting_594084	chr7_107607206_+	ncRNA_intronic
CAediting_594085	chr7_107607299_+	ncRNA_intronic
CAediting_594086	chr7_107607301_+	ncRNA_intronic
CAediting_594087	chr7_107607304_+	ncRNA_intronic
CAediting_594088	chr7_107607701_+	ncRNA_intronic
CAediting_594089	chr7_107607900_+	ncRNA_intronic
CAediting_594090	chr7_107611289_+	ncRNA_intronic
CAediting_594091	chr7_107611339_+	ncRNA_intronic
CAediting_594092	chr7_107615305_+	exonic
CAediting_594093	chr7_107615307_+	ncRNA_intronic
CAediting_594094	chr7_107615347_+	ncRNA_intronic
CAediting_594095	chr7_107615348_+	ncRNA_intronic
CAediting_594096	chr7_107615364_+	ncRNA_intronic
CAediting_594097	chr7_107615412_+	ncRNA_intronic
CAediting_594098	chr7_107615475_+	ncRNA_intronic
CAediting_594099	chr7_107615476_+	ncRNA_intronic
CAediting_594100	chr7_107616758_+	ncRNA_intronic
CAediting_594101	chr7_107616762_+	ncRNA_intronic
CAediting_594102	chr7_107616770_+	ncRNA_intronic
CAediting_594103	chr7_107616778_+	ncRNA_intronic
CAediting_594104	chr7_107616782_+	ncRNA_intronic
CAediting_594105	chr7_107616784_+	ncRNA_intronic
CAediting_594106	chr7_107616794_+	ncRNA_intronic
CAediting_594107	chr7_107616802_+	ncRNA_intronic
CAediting_594108	chr7_107616808_+	ncRNA_intronic
CAediting_594109	chr7_107616825_+	ncRNA_intronic
CAediting_594110	chr7_107616838_+	ncRNA_intronic
CAediting_594111	chr7_107616869_+	ncRNA_intronic
CAediting_594112	chr7_107616881_+	ncRNA_intronic
CAediting_594113	chr7_107616904_+	ncRNA_intronic
CAediting_594114	chr7_107616905_+	ncRNA_intronic
CAediting_594115	chr7_107616913_+	ncRNA_intronic
CAediting_594116	chr7_107616919_+	ncRNA_intronic
CAediting_594117	chr7_107616922_+	ncRNA_intronic
CAediting_594118	chr7_107616939_+	ncRNA_intronic
CAediting_594119	chr7_107617040_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_594053	chr7_107585870_+	SINE	Alu	AluSq2
CAediting_594054	chr7_107585871_+	SINE	Alu	AluSq2
CAediting_594055	chr7_107585880_+	SINE	Alu	AluSq2
CAediting_594056	chr7_107586778_+	SINE	Alu	AluSz
CAediting_594057	chr7_107586779_+	SINE	Alu	AluSz
CAediting_594058	chr7_107586792_+	SINE	Alu	AluSz
CAediting_594059	chr7_107586853_+	SINE	Alu	AluSz
CAediting_594060	chr7_107586895_+	SINE	Alu	AluSz
CAediting_594061	chr7_107586911_+	SINE	Alu	AluSz
CAediting_594062	chr7_107586950_+	SINE	Alu	AluSz
CAediting_594063	chr7_107586966_+	SINE	Alu	AluSz
CAediting_594064	chr7_107586991_+	SINE	Alu	AluSz
CAediting_594065	chr7_107587014_+	SINE	Alu	AluSz
CAediting_594066	chr7_107590576_+	SINE	Alu	AluJb
CAediting_594067	chr7_107590672_+	SINE	Alu	AluJb
CAediting_594068	chr7_107590745_+	SINE	Alu	AluJb
CAediting_594069	chr7_107597296_+	SINE	Alu	AluJr
CAediting_594070	chr7_107597297_+	SINE	Alu	AluJr
CAediting_594071	chr7_107597311_+	SINE	Alu	AluJr
CAediting_594072	chr7_107598794_+	SINE	Alu	AluJr
CAediting_594073	chr7_107598800_+	SINE	Alu	AluJr
CAediting_594074	chr7_107598862_+	SINE	Alu	AluJr
CAediting_594075	chr7_107598870_+	SINE	Alu	AluJr
CAediting_594076	chr7_107603705_+	SINE	Alu	AluJr
CAediting_594077	chr7_107603745_+	SINE	Alu	AluJr
CAediting_594078	chr7_107603772_+	SINE	Alu	AluJr
CAediting_594079	chr7_107603781_+	SINE	Alu	AluJr
CAediting_594080	chr7_107607169_+	SINE	Alu	AluSz
CAediting_594081	chr7_107607180_+	SINE	Alu	AluSz
CAediting_594082	chr7_107607196_+	SINE	Alu	AluSz
CAediting_594083	chr7_107607197_+	SINE	Alu	AluSz
CAediting_594084	chr7_107607206_+	SINE	Alu	AluSz
CAediting_594085	chr7_107607299_+	SINE	Alu	AluSz
CAediting_594086	chr7_107607301_+	SINE	Alu	AluSz
CAediting_594087	chr7_107607304_+	SINE	Alu	AluSz
CAediting_594088	chr7_107607701_+	SINE	Alu	AluSg
CAediting_594089	chr7_107607900_+	SINE	Alu	AluSg
CAediting_594090	chr7_107611289_+	SINE	Alu	AluJr4
CAediting_594091	chr7_107611339_+	SINE	Alu	AluJr4
CAediting_594094	chr7_107615347_+	SINE	Alu	AluSc8
CAediting_594095	chr7_107615348_+	SINE	Alu	AluSc8
CAediting_594096	chr7_107615364_+	SINE	Alu	AluSc8
CAediting_594097	chr7_107615412_+	SINE	Alu	AluSc8
CAediting_594098	chr7_107615475_+	SINE	Alu	AluSc8
CAediting_594099	chr7_107615476_+	SINE	Alu	AluSc8
CAediting_594100	chr7_107616758_+	SINE	Alu	AluSz
CAediting_594101	chr7_107616762_+	SINE	Alu	AluSz
CAediting_594102	chr7_107616770_+	SINE	Alu	AluSz
CAediting_594103	chr7_107616778_+	SINE	Alu	AluSz
CAediting_594104	chr7_107616782_+	SINE	Alu	AluSz
CAediting_594105	chr7_107616784_+	SINE	Alu	AluSz
CAediting_594106	chr7_107616794_+	SINE	Alu	AluSz
CAediting_594107	chr7_107616802_+	SINE	Alu	AluSz
CAediting_594108	chr7_107616808_+	SINE	Alu	AluSz
CAediting_594109	chr7_107616825_+	SINE	Alu	AluSz
CAediting_594110	chr7_107616838_+	SINE	Alu	AluSz
CAediting_594111	chr7_107616869_+	SINE	Alu	AluSz
CAediting_594112	chr7_107616881_+	SINE	Alu	AluSz
CAediting_594113	chr7_107616904_+	SINE	Alu	AluSz
CAediting_594114	chr7_107616905_+	SINE	Alu	AluSz
CAediting_594115	chr7_107616913_+	SINE	Alu	AluSz
CAediting_594116	chr7_107616919_+	SINE	Alu	AluSz
CAediting_594117	chr7_107616922_+	SINE	Alu	AluSz
CAediting_594118	chr7_107616939_+	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for BCAP29

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_594097	chr7_107615412_+	107615411:107615419	5SS	2+0i	AAGGTGAAA	4.51	AGGGTGAAA	-0.03
MEX_2	CAediting_594097	chr7_107615412_+	107615411:107615419	5SS	2+0i	AAGGTGAAA	4.51	AGGGTGAAA	-0.03
MEX_1	CAediting_594097	chr7_107615412_+	107615411:107615419	5SS	2+0i	AAGGTGAAA	4.51	AGGGTGAAA	-0.03
ES	CAediting_594100	chr7_107616758_+	107616743:107616765	3SS	0+5i	TTTGTTTGTTTTTTGAGACAGTG	-13.23	TTTGTTTGTTTTTTGGGACAGTG	-11.67
MEX_2	CAediting_594100	chr7_107616758_+	107616743:107616765	3SS	0+5i	TTTGTTTGTTTTTTGAGACAGTG	-13.23	TTTGTTTGTTTTTTGGGACAGTG	-11.67
ES	CAediting_594101	chr7_107616762_+	107616743:107616765	3SS	0+1i	TTTGTTTGTTTTTTGAGACAGTG	-13.23	TTTGTTTGTTTTTTGAGACGGTG	-4.48
MEX_2	CAediting_594101	chr7_107616762_+	107616743:107616765	3SS	0+1i	TTTGTTTGTTTTTTGAGACAGTG	-13.23	TTTGTTTGTTTTTTGAGACGGTG	-4.48
ES	CAediting_594113	chr7_107616904_+	107616903:107616911	5SS	2+0i	TAAGTTGGG	-8.43	TGAGTTGGG	-13.09
MEX_2	CAediting_594113	chr7_107616904_+	107616903:107616911	5SS	2+0i	TAAGTTGGG	-8.43	TGAGTTGGG	-13.09
ES	CAediting_594114	chr7_107616905_+	107616903:107616911	5SS	1+0i	TAAGTTGGG	-8.43	TAGGTTGGG	1
MEX_2	CAediting_594114	chr7_107616905_+	107616903:107616911	5SS	1+0i	TAAGTTGGG	-8.43	TAGGTTGGG	1

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000075790.9.BCAP29.

Correlation between RNA A-to-I editing and PSI for ENSG00000075790.9.BCAP29.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BCAP29

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for BCAP29

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for BCAP29

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_594094	chr7_107615347_+	ENSG00000075790.9	ENST00000436699	hsa-miR-638	107615346	107615352	7mer-1a	107615328	107615352	151.00	-28.36
CAediting_594095	chr7_107615348_+	ENSG00000075790.9	ENST00000436699	hsa-miR-4744	107615341	107615347	7mer-m8	107615326	107615348	145.00	-12.02
CAediting_594095	chr7_107615348_+	ENSG00000075790.9	ENST00000436699	hsa-miR-8052	107615346	107615352	7mer-1a	107615330	107615352	147.00	-25.20
CAediting_594096	chr7_107615364_+	ENSG00000075790.9	ENST00000436699	hsa-miR-4290	107615360	107615366	7mer-m8	107615349	107615367	140.00	-14.16
CAediting_594096	chr7_107615364_+	ENSG00000075790.9	ENST00000436699	hsa-miR-4687-5p	107615361	107615367	7mer-m8	107615347	107615368	145.00	-21.58
CAediting_594096	chr7_107615364_+	ENSG00000075790.9	ENST00000436699	hsa-miR-519d-5p	107615357	107615363	7mer-m8	107615340	107615364	155.00	-18.90
CAediting_594097	chr7_107615412_+	ENSG00000075790.9	ENST00000436699	hsa-miR-10a-5p	107615408	107615414	7mer-m8	107615393	107615415	150.00	-17.52
CAediting_594097	chr7_107615412_+	ENSG00000075790.9	ENST00000436699	hsa-miR-10b-5p	107615408	107615414	7mer-m8	107615393	107615415	146.00	-17.52
CAediting_594097	chr7_107615412_+	ENSG00000075790.9	ENST00000436699	hsa-miR-3620-3p	107615409	107615416	8mer-1a	107615394	107615416	144.00	-18.41
CAediting_594098	chr7_107615475_+	ENSG00000075790.9	ENST00000436699	hsa-miR-513a-5p	107615469	107615475	7mer-m8	107615459	107615476	152.00	-19.49
CAediting_594098	chr7_107615475_+	ENSG00000075790.9	ENST00000436699	hsa-miR-513a-5p	107615469	107615475	7mer-m8	107615459	107615476	152.00	-19.49
CAediting_594098	chr7_107615475_+	ENSG00000075790.9	ENST00000436699	hsa-miR-638	107615474	107615480	7mer-1a	107615456	107615480	155.00	-33.16
CAediting_594099	chr7_107615476_+	ENSG00000075790.9	ENST00000436699	hsa-miR-8052	107615474	107615480	7mer-1a	107615460	107615480	141.00	-22.24

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_594098	chr7_107615475_+	ENSG00000075790.9	ENST00000436699	hsa-miR-10399-5p	107615470	107615476	7mer-m8	107615454	107615477	146	-13.82
CAediting_594099	chr7_107615476_+	ENSG00000075790.9	ENST00000436699	hsa-miR-10399-5p	107615470	107615476	7mer-m8	107615454	107615477	146	-13.82
CAediting_594096	chr7_107615364_+	ENSG00000075790.9	ENST00000436699	hsa-miR-4297	107615360	107615366	7mer-m8	107615352	107615367	142	-15.84
CAediting_594099	chr7_107615476_+	ENSG00000075790.9	ENST00000436699	hsa-miR-5089-5p	107615474	107615480	7mer-m8	107615462	107615481	146	-11.97
CAediting_594095	chr7_107615348_+	ENSG00000075790.9	ENST00000436699	hsa-miR-5089-5p	107615346	107615352	7mer-m8	107615334	107615353	143	-13.02
CAediting_594096	chr7_107615364_+	ENSG00000075790.9	ENST00000436699	hsa-miR-5581-5p	107615360	107615366	7mer-m8	107615347	107615367	153	-23.46
CAediting_594098	chr7_107615475_+	ENSG00000075790.9	ENST00000436699	hsa-miR-7151-3p	107615468	107615475	8mer-1a	107615455	107615475	140	-12.31

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000075790.9	ENST00000436699	hsa-miR-624-3p	107615418	107615424	7mer-m8	107615406	107615425	147	-15.34
CAediting_1229414	chr17_67471546_+	ENSG00000075790.9	ENST00000379119	hsa-miR-548aa	107620648	107620654	7mer-m8	107620631	107620655	152	-14.4
CAediting_1229414	chr17_67471546_+	ENSG00000075790.9	ENST00000379119	hsa-miR-548aa	107618973	107618979	7mer-m8	107618955	107618980	158	-14.82
CAediting_1160181	chr17_7017644_-	ENSG00000075790.9	ENST00000379119	hsa-miR-195-3p	107620198	107620205	8mer-1a	107620185	107620205	153	-12.98
CAediting_1368054	chr19_46709310_-	ENSG00000075790.9	ENST00000379119	hsa-miR-320e	107620725	107620731	7mer-m8	107620715	107620732	152	-16.7
CAediting_77128	chr1_85133844_+	ENSG00000075790.9	ENST00000379119	hsa-miR-4423-3p	107620366	107620373	8mer-1a	107620353	107620373	140	-12.54
CAediting_77128	chr1_85133844_+	ENSG00000075790.9	ENST00000379119	hsa-miR-4423-3p	107621186	107621192	7mer-m8	107621173	107621193	161	-19.52
CAediting_442554	chr5_154685830_+	ENSG00000075790.9	ENST00000379119	hsa-miR-1303	107619948	107619955	8mer-1a	107619934	107619955	157	-22.58
CAediting_414656	chr5_72878640_+	ENSG00000075790.9	ENST00000379119	hsa-miR-4804-3p	107622960	107622967	8mer-1a	107622947	107622967	140	-14.38
CAediting_524911	chr7_5495852_-	ENSG00000075790.9	ENST00000379119	hsa-miR-589-3p	107622385	107622391	7mer-m8	107622369	107622392	144	-12.47
CAediting_1368054	chr19_46709310_-	ENSG00000075790.9	ENST00000465919	hsa-miR-320e	107618554	107618560	7mer-m8	107618543	107618561	150	-19.16
CAediting_1229414	chr17_67471546_+	ENSG00000075790.9	ENST00000379117	hsa-miR-548aa	107618973	107618979	7mer-m8	107618955	107618980	158	-14.82
CAediting_1368054	chr19_46709310_-	ENSG00000075790.9	ENST00000379117	hsa-miR-320e	107618554	107618560	7mer-m8	107618543	107618561	150	-19.16
CAediting_524911	chr7_5495852_-	ENSG00000075790.9	ENST00000436699	hsa-miR-589-3p	107615799	107615805	7mer-m8	107615783	107615806	145	-16.24
CAediting_468389	chr6_31355314_-	ENSG00000075790.9	ENST00000379119	hsa-miR-6891-5p	107622149	107622156	8mer-1a	107622138	107622156	141	-18.06
CAediting_1524209	chrX_134546392_-	ENSG00000075790.9	ENST00000379119	hsa-miR-503-5p	107621894	107621900	7mer-1a	107621878	107621900	149	-23.78

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000075790.9	ENST00000379119	hsa-miR-1303	107620930	107620937	8mer-1a	107620913	107620937	150	-19.82
CAediting_442554	chr5_154685830_+	ENSG00000075790.9	ENST00000379119	hsa-miR-1303	107622170	107622176	7mer-m8	107622156	107622177	143	-15.02
CAediting_1160181	chr17_7017644_-	ENSG00000075790.9	ENST00000379119	hsa-miR-195-3p	107620312	107620318	7mer-m8	107620298	107620319	147	-8.7
CAediting_1160181	chr17_7017644_-	ENSG00000075790.9	ENST00000379119	hsa-miR-195-3p	107621815	107621820	6mer	107621800	107621821	140	-12.36
CAediting_393	chr1_1167164_+	ENSG00000075790.9	ENST00000379119	hsa-miR-200b-3p	107619149	107619155	7mer-m8	107619135	107619156	147	-12.2
CAediting_393	chr1_1167164_+	ENSG00000075790.9	ENST00000379119	hsa-miR-200b-3p	107619176	107619182	7mer-m8	107619162	107619183	147	-12.2
CAediting_1368054	chr19_46709310_-	ENSG00000075790.9	ENST00000379119	hsa-miR-320e	107619898	107619904	7mer-m8	107619888	107619905	151	-18.75
CAediting_1368054	chr19_46709310_-	ENSG00000075790.9	ENST00000379119	hsa-miR-320e	107621138	107621145	8mer-1a	107621127	107621145	143	-11.94
CAediting_688080	chr9_63819626_+	ENSG00000075790.9	ENST00000379119	hsa-miR-4477b	107620414	107620420	7mer-m8	107620400	107620421	144	-8.88
CAediting_688081	chr9_63819627_+	ENSG00000075790.9	ENST00000379119	hsa-miR-4477b	107620414	107620420	7mer-m8	107620400	107620421	144	-8.88
CAediting_1524209	chrX_134546392_-	ENSG00000075790.9	ENST00000379119	hsa-miR-503-5p	107623055	107623060	6mer	107623040	107623061	145	-22.79
CAediting_748296	chr10_51299626_+	ENSG00000075790.9	ENST00000379119	hsa-miR-605-3p	107621102	107621108	7mer-m8	107621089	107621109	148	-14.11
CAediting_748296	chr10_51299626_+	ENSG00000075790.9	ENST00000379119	hsa-miR-605-3p	107622538	107622544	7mer-m8	107622524	107622545	140	-13.19
CAediting_980496	chr14_31014685_-	ENSG00000075790.9	ENST00000379119	hsa-miR-624-3p	107620767	107620772	6mer	107620753	107620773	142	-11.46
CAediting_468389	chr6_31355314_-	ENSG00000075790.9	ENST00000379119	hsa-miR-6891-5p	107622987	107622992	6mer	107622975	107622993	141	-17.62

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for BCAP29

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000436699.2	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_594092	ENST00000436699.2	chr7_107615305_+	-283.50	-280.10	-294.50
CAediting_594093	ENST00000436699.2	chr7_107615307_+	-284.70	-280.10	-294.50
CAediting_594094	ENST00000436699.2	chr7_107615347_+	-278.80	-280.10	-294.50
CAediting_594095	ENST00000436699.2	chr7_107615348_+	-281.10	-280.10	-294.50
CAediting_594096	ENST00000436699.2	chr7_107615364_+	-279.70	-280.10	-294.50
CAediting_594097	ENST00000436699.2	chr7_107615412_+	-282.40	-280.10	-294.50
CAediting_594098	ENST00000436699.2	chr7_107615475_+	-280.50	-280.10	-294.50
CAediting_594099	ENST00000436699.2	chr7_107615476_+	-280.10	-280.10	-294.50

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Relation with ADAR for BCAP29

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
SKCM	CAediting_594108	chr7_107616808_+	.	.	.	.	0.00564024638994881	0.344872028415338

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Relation with cancer stages for BCAP29

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for BCAP29

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for BCAP29

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for BCAP29

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene