CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ARHGAP15 (CAeditome ID:55843)

Gene summary for ARHGAP15

check button Gene summary
Gene informationGene symbol

ARHGAP15

Gene ID

55843

Gene nameRho GTPase activating protein 15
SynonymsBM046
Cytomap

2q22.2-q22.3

Type of geneprotein-coding
Descriptionrho GTPase-activating protein 15rho-type GTPase-activating protein 15
Modification date20210518
UniProtAcc

Q53QZ3

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ARHGAP15

GO:0008360

Rho GTPase-activating protein 15

12650940

ARHGAP15

GO:0005096

Rho GTPase-activating protein 15

12650940


Top

RNA A-to-I events for ARHGAP15

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000075884.11

check button RNA A-to-I editing events in Cancer.
CAediting_216860(143178724, +), CAediting_216861(143179606, +), CAediting_216862(143179639, +), CAediting_216863(143179771, +), CAediting_216864(143179836, +), CAediting_216865(143218692, +), CAediting_216866(143218748, +), CAediting_216867(143218771, +), CAediting_216868(143218836, +), CAediting_216869(143219234, +), CAediting_216870(143219391, +), CAediting_216871(143239719, +), CAediting_216872(143247698, +), CAediting_216873(143248733, +), CAediting_216874(143271526, +), CAediting_216875(143271550, +), CAediting_216876(143271683, +), CAediting_216877(143272353, +), CAediting_216878(143272359, +), CAediting_216879(143272375, +), CAediting_216880(143272376, +), CAediting_216881(143272384, +), CAediting_216882(143272435, +), CAediting_216883(143272439, +), CAediting_216884(143272443, +), CAediting_216885(143272444, +), CAediting_216886(143272496, +), CAediting_216887(143272510, +), CAediting_216888(143272514, +), CAediting_216889(143272516, +), CAediting_216890(143272532, +), CAediting_216891(143272533, +), CAediting_216892(143272538, +), CAediting_216893(143272581, +), CAediting_216894(143272594, +), CAediting_216895(143272604, +), CAediting_216896(143274951, +), CAediting_216897(143274965, +), CAediting_216898(143274975, +), CAediting_216899(143275022, +), CAediting_216900(143275037, +), CAediting_216901(143275058, +), CAediting_216902(143275107, +), CAediting_216903(143275115, +), CAediting_216904(143276677, +), CAediting_216905(143276719, +), CAediting_216906(143287709, +), CAediting_216907(143287747, +), CAediting_216908(143604930, +), CAediting_216909(143604932, +), CAediting_216910(143604934, +), CAediting_216911(143604940, +), CAediting_216912(143604965, +), CAediting_216913(143604967, +), CAediting_216914(143604983, +), CAediting_216915(143604995, +), CAediting_216916(143605009, +), CAediting_216917(143605038, +), CAediting_216918(143605042, +), CAediting_216919(143605048, +), CAediting_216920(143605050, +), CAediting_216921(143605089, +), CAediting_216922(143605092, +), CAediting_216923(143605109, +), CAediting_216924(143605150, +), CAediting_216925(143605152, +), CAediting_216926(143605164, +), CAediting_216927(143605759, +), CAediting_216928(143605764, +), CAediting_216929(143605827, +), CAediting_216930(143605828, +), CAediting_216931(143605838, +), CAediting_216932(143605853, +), CAediting_216933(143605899, +), CAediting_216934(143605915, +), CAediting_216935(143605921, +), CAediting_216936(143605925, +), CAediting_216937(143605933, +), CAediting_216938(143605938, +), CAediting_216939(143605948, +), CAediting_216940(143605956, +), CAediting_216941(143605957, +), CAediting_216942(143605958, +), CAediting_216943(143605968, +), CAediting_216944(143606023, +), CAediting_216945(143667738, +), CAediting_216946(143667752, +), CAediting_216947(143667783, +), CAediting_216948(143667841, +), CAediting_216949(143673346, +),

Top

RNA editing positional annotations for ARHGAP15 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_216860chr2_143178724_+ncRNA_intronic
CAediting_216861chr2_143179606_+ncRNA_intronic
CAediting_216862chr2_143179639_+ncRNA_intronic
CAediting_216863chr2_143179771_+ncRNA_intronic
CAediting_216864chr2_143179836_+ncRNA_intronic
CAediting_216865chr2_143218692_+ncRNA_intronic
CAediting_216866chr2_143218748_+ncRNA_intronic
CAediting_216867chr2_143218771_+ncRNA_intronic
CAediting_216868chr2_143218836_+ncRNA_intronic
CAediting_216869chr2_143219234_+ncRNA_intronic
CAediting_216870chr2_143219391_+ncRNA_intronic
CAediting_216871chr2_143239719_+ncRNA_intronic
CAediting_216872chr2_143247698_+ncRNA_intronic
CAediting_216873chr2_143248733_+ncRNA_intronic
CAediting_216874chr2_143271526_+ncRNA_intronic
CAediting_216875chr2_143271550_+ncRNA_intronic
CAediting_216876chr2_143271683_+ncRNA_intronic
CAediting_216877chr2_143272353_+ncRNA_intronic
CAediting_216878chr2_143272359_+ncRNA_intronic
CAediting_216879chr2_143272375_+ncRNA_intronic
CAediting_216880chr2_143272376_+ncRNA_intronic
CAediting_216881chr2_143272384_+ncRNA_intronic
CAediting_216882chr2_143272435_+ncRNA_intronic
CAediting_216883chr2_143272439_+ncRNA_intronic
CAediting_216884chr2_143272443_+ncRNA_intronic
CAediting_216885chr2_143272444_+ncRNA_intronic
CAediting_216886chr2_143272496_+ncRNA_intronic
CAediting_216887chr2_143272510_+ncRNA_intronic
CAediting_216888chr2_143272514_+ncRNA_intronic
CAediting_216889chr2_143272516_+ncRNA_intronic
CAediting_216890chr2_143272532_+ncRNA_intronic
CAediting_216891chr2_143272533_+ncRNA_intronic
CAediting_216892chr2_143272538_+ncRNA_intronic
CAediting_216893chr2_143272581_+ncRNA_intronic
CAediting_216894chr2_143272594_+ncRNA_intronic
CAediting_216895chr2_143272604_+ncRNA_intronic
CAediting_216896chr2_143274951_+ncRNA_intronic
CAediting_216897chr2_143274965_+ncRNA_intronic
CAediting_216898chr2_143274975_+ncRNA_intronic
CAediting_216899chr2_143275022_+ncRNA_intronic
CAediting_216900chr2_143275037_+ncRNA_intronic
CAediting_216901chr2_143275058_+ncRNA_intronic
CAediting_216902chr2_143275107_+ncRNA_intronic
CAediting_216903chr2_143275115_+ncRNA_intronic
CAediting_216904chr2_143276677_+ncRNA_intronic
CAediting_216905chr2_143276719_+ncRNA_intronic
CAediting_216906chr2_143287709_+ncRNA_intronic
CAediting_216907chr2_143287747_+ncRNA_intronic
CAediting_216908chr2_143604930_+ncRNA_intronic
CAediting_216909chr2_143604932_+ncRNA_intronic
CAediting_216910chr2_143604934_+ncRNA_intronic
CAediting_216911chr2_143604940_+ncRNA_intronic
CAediting_216912chr2_143604965_+ncRNA_intronic
CAediting_216913chr2_143604967_+ncRNA_intronic
CAediting_216914chr2_143604983_+ncRNA_intronic
CAediting_216915chr2_143604995_+ncRNA_intronic
CAediting_216916chr2_143605009_+ncRNA_intronic
CAediting_216917chr2_143605038_+ncRNA_intronic
CAediting_216918chr2_143605042_+ncRNA_intronic
CAediting_216919chr2_143605048_+ncRNA_intronic
CAediting_216920chr2_143605050_+ncRNA_intronic
CAediting_216921chr2_143605089_+ncRNA_intronic
CAediting_216922chr2_143605092_+ncRNA_intronic
CAediting_216923chr2_143605109_+ncRNA_intronic
CAediting_216924chr2_143605150_+ncRNA_intronic
CAediting_216925chr2_143605152_+ncRNA_intronic
CAediting_216926chr2_143605164_+ncRNA_intronic
CAediting_216927chr2_143605759_+ncRNA_intronic
CAediting_216928chr2_143605764_+ncRNA_intronic
CAediting_216929chr2_143605827_+ncRNA_intronic
CAediting_216930chr2_143605828_+ncRNA_intronic
CAediting_216931chr2_143605838_+ncRNA_intronic
CAediting_216932chr2_143605853_+ncRNA_intronic
CAediting_216933chr2_143605899_+ncRNA_intronic
CAediting_216934chr2_143605915_+ncRNA_intronic
CAediting_216935chr2_143605921_+ncRNA_intronic
CAediting_216936chr2_143605925_+ncRNA_intronic
CAediting_216937chr2_143605933_+ncRNA_intronic
CAediting_216938chr2_143605938_+ncRNA_intronic
CAediting_216939chr2_143605948_+ncRNA_intronic
CAediting_216940chr2_143605956_+ncRNA_intronic
CAediting_216941chr2_143605957_+ncRNA_intronic
CAediting_216942chr2_143605958_+ncRNA_intronic
CAediting_216943chr2_143605968_+ncRNA_intronic
CAediting_216944chr2_143606023_+ncRNA_intronic
CAediting_216945chr2_143667738_+ncRNA_intronic
CAediting_216946chr2_143667752_+ncRNA_intronic
CAediting_216947chr2_143667783_+ncRNA_intronic
CAediting_216948chr2_143667841_+ncRNA_intronic
CAediting_216949chr2_143673346_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_216860chr2_143178724_+SINEAluAluJr
CAediting_216861chr2_143179606_+DNATcMar-TiggerTigger1
CAediting_216862chr2_143179639_+SINEAluAluJb
CAediting_216863chr2_143179771_+SINEAluAluJb
CAediting_216864chr2_143179836_+SINEAluAluJb
CAediting_216865chr2_143218692_+DNATcMar-TiggerTigger3c
CAediting_216866chr2_143218748_+DNATcMar-TiggerTigger3c
CAediting_216867chr2_143218771_+DNATcMar-TiggerTigger3c
CAediting_216868chr2_143218836_+DNATcMar-TiggerTigger3c
CAediting_216869chr2_143219234_+DNATcMar-TiggerTigger3a
CAediting_216870chr2_143219391_+DNATcMar-TiggerTigger3a
CAediting_216871chr2_143239719_+SINEAluAluSx
CAediting_216872chr2_143247698_+LINEL2L2b
CAediting_216873chr2_143248733_+LINEL2L2a
CAediting_216874chr2_143271526_+SINEAluAluYf1
CAediting_216875chr2_143271550_+SINEAluAluYf1
CAediting_216876chr2_143271683_+SINEAluAluYf1
CAediting_216877chr2_143272353_+SINEAluAluSx1
CAediting_216878chr2_143272359_+SINEAluAluSx1
CAediting_216879chr2_143272375_+SINEAluAluSx1
CAediting_216880chr2_143272376_+SINEAluAluSx1
CAediting_216881chr2_143272384_+SINEAluAluSx1
CAediting_216882chr2_143272435_+SINEAluAluSx1
CAediting_216883chr2_143272439_+SINEAluAluSx1
CAediting_216884chr2_143272443_+SINEAluAluSx1
CAediting_216885chr2_143272444_+SINEAluAluSx1
CAediting_216886chr2_143272496_+SINEAluAluSx1
CAediting_216887chr2_143272510_+SINEAluAluSx1
CAediting_216888chr2_143272514_+SINEAluAluSx1
CAediting_216889chr2_143272516_+SINEAluAluSx1
CAediting_216890chr2_143272532_+SINEAluAluSx1
CAediting_216891chr2_143272533_+SINEAluAluSx1
CAediting_216892chr2_143272538_+SINEAluAluSx1
CAediting_216893chr2_143272581_+SINEAluAluSx1
CAediting_216894chr2_143272594_+SINEAluAluSx1
CAediting_216895chr2_143272604_+SINEAluAluSx1
CAediting_216896chr2_143274951_+SINEAluAluSz
CAediting_216897chr2_143274965_+SINEAluAluSz
CAediting_216898chr2_143274975_+SINEAluAluSz
CAediting_216899chr2_143275022_+SINEAluAluSz
CAediting_216900chr2_143275037_+SINEAluAluSz
CAediting_216901chr2_143275058_+SINEAluAluSz
CAediting_216902chr2_143275107_+SINEAluAluSz
CAediting_216903chr2_143275115_+SINEAluAluSz
CAediting_216904chr2_143276677_+SINEAluAluJr4
CAediting_216905chr2_143276719_+SINEAluAluJr4
CAediting_216906chr2_143287709_+SINEAluAluSq2
CAediting_216907chr2_143287747_+SINEAluAluSq2
CAediting_216908chr2_143604930_+SINEAluAluSg
CAediting_216909chr2_143604932_+SINEAluAluSg
CAediting_216910chr2_143604934_+SINEAluAluSg
CAediting_216911chr2_143604940_+SINEAluAluSg
CAediting_216912chr2_143604965_+SINEAluAluSg
CAediting_216913chr2_143604967_+SINEAluAluSg
CAediting_216914chr2_143604983_+SINEAluAluSg
CAediting_216915chr2_143604995_+SINEAluAluSg
CAediting_216916chr2_143605009_+SINEAluAluSg
CAediting_216917chr2_143605038_+SINEAluAluSg
CAediting_216918chr2_143605042_+SINEAluAluSg
CAediting_216919chr2_143605048_+SINEAluAluSg
CAediting_216920chr2_143605050_+SINEAluAluSg
CAediting_216921chr2_143605089_+SINEAluAluSg
CAediting_216922chr2_143605092_+SINEAluAluSg
CAediting_216923chr2_143605109_+SINEAluAluSg
CAediting_216924chr2_143605150_+SINEAluAluSg
CAediting_216925chr2_143605152_+SINEAluAluSg
CAediting_216926chr2_143605164_+SINEAluAluSg
CAediting_216927chr2_143605759_+SINEAluAluSx
CAediting_216928chr2_143605764_+SINEAluAluSx
CAediting_216929chr2_143605827_+SINEAluAluSx
CAediting_216930chr2_143605828_+SINEAluAluSx
CAediting_216931chr2_143605838_+SINEAluAluSx
CAediting_216932chr2_143605853_+SINEAluAluSx
CAediting_216933chr2_143605899_+SINEAluAluSx
CAediting_216934chr2_143605915_+SINEAluAluSx
CAediting_216935chr2_143605921_+SINEAluAluSx
CAediting_216936chr2_143605925_+SINEAluAluSx
CAediting_216937chr2_143605933_+SINEAluAluSx
CAediting_216938chr2_143605938_+SINEAluAluSx
CAediting_216939chr2_143605948_+SINEAluAluSx
CAediting_216940chr2_143605956_+SINEAluAluSx
CAediting_216941chr2_143605957_+SINEAluAluSx
CAediting_216942chr2_143605958_+SINEAluAluSx
CAediting_216943chr2_143605968_+SINEAluAluSx
CAediting_216944chr2_143606023_+SINEAluAluSx
CAediting_216945chr2_143667738_+SINEAluAluJb
CAediting_216946chr2_143667752_+SINEAluAluJb
CAediting_216947chr2_143667783_+SINEAluAluJb
CAediting_216948chr2_143667841_+SINEAluAluJb
CAediting_216949chr2_143673346_+SINEAluAluSz

Top

RNA A-to-I editing events in the alternative splicing sites for ARHGAP15

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000075884.11.ARHGAP15.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000075884.11.ARHGAP15.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ARHGAP15

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for ARHGAP15

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for ARHGAP15

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_86358chr1_109598906_+ENSG00000075884.11ENST00000473426.1hsa-miR-197-5p1436078221436078287mer-m8143607804143607829160-29.28
CAediting_524911chr7_5495852_-ENSG00000075884.11ENST00000473426.1hsa-miR-589-3p1436083081436083147mer-m8143608288143608315155-30.79

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000075884.11ENST00000473426.1hsa-miR-195-3p1436083961436084027mer-m8143608382143608403140-7.52
CAediting_1368054chr19_46709310_-ENSG00000075884.11ENST00000473426.1hsa-miR-320e1436076901436076956mer143607678143607696140-14.55

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000075884.11ENST00000409869hsa-miR-200b-3p1432369661432369727mer-m8143236952143236973149-14.89
CAediting_1160181chr17_7017644_-ENSG00000075884.11ENST00000409869hsa-miR-195-3p1432377601432377667mer-m8143237746143237767140-6.71
CAediting_117844chr1_162342605_+ENSG00000075884.11ENST00000409869hsa-miR-556-3p1432381061432381127mer-m8143238091143238113151-11.7
CAediting_228905chr2_188297554_+ENSG00000075884.11ENST00000409869hsa-miR-561-3p1432380861432380938mer-1a143238069143238093146-6.5

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000075884.11ENST00000409869hsa-miR-13031432369171432369237mer-m8143236903143236924146-11.69
CAediting_524911chr7_5495852_-ENSG00000075884.11ENST00000409869hsa-miR-589-3p1432364631432364708mer-1a143236447143236470147-16.31

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ARHGAP15

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for ARHGAP15

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

Top

Relation with cancer stages for ARHGAP15

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for ARHGAP15

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for ARHGAP15

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for ARHGAP15

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
ARHGAP15C4317009Diverticular Diseases2CTD_human
ARHGAP15C4505353Diverticular Bleeding2CTD_human