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Editing gene: GLT8D1 (CAeditome ID:55830)

Gene summary for GLT8D1

Gene summary

Gene information	Gene symbol	GLT8D1
	Gene ID	55830
	Gene name	glycosyltransferase 8 domain containing 1
	Synonyms	AD-017\|MSTP139
	Cytomap	3p21.1
	Type of gene	protein-coding
	Description	glycosyltransferase 8 domain-containing protein 1glycosyltransferase AD-017
	Modification date	20210522
	UniProtAcc	Q68CQ7
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for GLT8D1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000016864.15

RNA A-to-I editing events in Cancer.

CAediting_285261(52694554, -), CAediting_285262(52694589, -), CAediting_285263(52694602, -), CAediting_285264(52694715, -), CAediting_285265(52694761, -), CAediting_285266(52694762, -), CAediting_285267(52695014, -), CAediting_285268(52695117, -), CAediting_285269(52695128, -), CAediting_285270(52695140, -), CAediting_285271(52695152, -), CAediting_285272(52695164, -), CAediting_285273(52695177, -), CAediting_285274(52695180, -), CAediting_285275(52695228, -), CAediting_285276(52695286, -), CAediting_285277(52695291, -), CAediting_285278(52695304, -), CAediting_285279(52695331, -), CAediting_285280(52695341, -), CAediting_285281(52695348, -), CAediting_285282(52695382, -), CAediting_285283(52695409, -), CAediting_285284(52695417, -), CAediting_285285(52695622, -), CAediting_285286(52695637, -), CAediting_285287(52695644, -), CAediting_285288(52695700, -), CAediting_285289(52695704, -), CAediting_285290(52695730, -), CAediting_285291(52695742, -), CAediting_285292(52695767, -), CAediting_285293(52695794, -), CAediting_285294(52695815, -), CAediting_285295(52695822, -), CAediting_285296(52695844, -), CAediting_285297(52695845, -), CAediting_285298(52695868, -), CAediting_285299(52695878, -), CAediting_285300(52695924, -), CAediting_285301(52695925, -), CAediting_285302(52696065, -), CAediting_285303(52698569, -), CAediting_285304(52700845, -), CAediting_285305(52700870, -), CAediting_285306(52700896, -), CAediting_285307(52700943, -), CAediting_285308(52700982, -), CAediting_285309(52700983, -), CAediting_285310(52701018, -), CAediting_285311(52701026, -), CAediting_285312(52701500, -), CAediting_285313(52701506, -), CAediting_285314(52701507, -), CAediting_285315(52701537, -), CAediting_285316(52701542, -), CAediting_285317(52702092, -), CAediting_285318(52702111, -), CAediting_285319(52702138, -), CAediting_285320(52702329, -), CAediting_285321(52702334, -), CAediting_285322(52702424, -), CAediting_285323(52702464, -), CAediting_285324(52702544, -), CAediting_285325(52702790, -), CAediting_285326(52702816, -), CAediting_285327(52702822, -), CAediting_285328(52702847, -), CAediting_285329(52702852, -), CAediting_285330(52702854, -), CAediting_285331(52702855, -), CAediting_285332(52702859, -), CAediting_285333(52702863, -), CAediting_285334(52702872, -), CAediting_285335(52702878, -), CAediting_285336(52702883, -), CAediting_285337(52702884, -), CAediting_285338(52702895, -), CAediting_285339(52702896, -), CAediting_285340(52702915, -), CAediting_285341(52702925, -), CAediting_285342(52702951, -), CAediting_285343(52702971, -), CAediting_285344(52702991, -), CAediting_285345(52703005, -), CAediting_285346(52703042, -), CAediting_285347(52703050, -), CAediting_285348(52703059, -),

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RNA editing positional annotations for GLT8D1 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_285267	chr3_52695014_-	nonsynonymous SNV	ENST00000266014.8	c.A947G	p.Y316C	D	D	D
CAediting_285267	chr3_52695014_-	nonsynonymous SNV	ENST00000394783.6	c.A947G	p.Y316C	D	D	D
CAediting_285267	chr3_52695014_-	nonsynonymous SNV	ENST00000478968.5	c.A947G	p.Y316C	D	D	D
CAediting_285267	chr3_52695014_-	nonsynonymous SNV	ENST00000491606.4	c.A947G	p.Y316C	D	D	D
CAediting_285275	chr3_52695228_-	nonsynonymous SNV	ENST00000266014.8	c.A887G	p.H296R	T	D	D
CAediting_285275	chr3_52695228_-	nonsynonymous SNV	ENST00000394783.6	c.A887G	p.H296R	T	D	D
CAediting_285275	chr3_52695228_-	nonsynonymous SNV	ENST00000478968.5	c.A887G	p.H296R	T	D	D
CAediting_285275	chr3_52695228_-	nonsynonymous SNV	ENST00000491606.4	c.A887G	p.H296R	T	D	D
CAediting_285277	chr3_52695291_-	nonsynonymous SNV	ENST00000266014.8	c.A824G	p.Y275C	D	D	D
CAediting_285277	chr3_52695291_-	nonsynonymous SNV	ENST00000394783.6	c.A824G	p.Y275C	D	D	D
CAediting_285277	chr3_52695291_-	nonsynonymous SNV	ENST00000478968.5	c.A824G	p.Y275C	D	D	D
CAediting_285277	chr3_52695291_-	nonsynonymous SNV	ENST00000491606.4	c.A824G	p.Y275C	D	D	D

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_285261	chr3_52694554_-	UTR3
CAediting_285262	chr3_52694589_-	UTR3
CAediting_285263	chr3_52694602_-	UTR3
CAediting_285264	chr3_52694715_-	UTR3
CAediting_285265	chr3_52694761_-	UTR3
CAediting_285266	chr3_52694762_-	UTR3
CAediting_285267	chr3_52695014_-	exonic
CAediting_285268	chr3_52695117_-	ncRNA_intronic
CAediting_285269	chr3_52695128_-	ncRNA_intronic
CAediting_285270	chr3_52695140_-	ncRNA_intronic
CAediting_285271	chr3_52695152_-	ncRNA_intronic
CAediting_285272	chr3_52695164_-	ncRNA_intronic
CAediting_285273	chr3_52695177_-	ncRNA_intronic
CAediting_285274	chr3_52695180_-	ncRNA_intronic
CAediting_285275	chr3_52695228_-	exonic
CAediting_285276	chr3_52695286_-	exonic
CAediting_285277	chr3_52695291_-	exonic
CAediting_285278	chr3_52695304_-	ncRNA_exonic;splicing
CAediting_285279	chr3_52695331_-	ncRNA_exonic
CAediting_285280	chr3_52695341_-	ncRNA_exonic
CAediting_285281	chr3_52695348_-	ncRNA_exonic
CAediting_285282	chr3_52695382_-	ncRNA_exonic
CAediting_285283	chr3_52695409_-	ncRNA_exonic
CAediting_285284	chr3_52695417_-	ncRNA_exonic
CAediting_285285	chr3_52695622_-	ncRNA_exonic
CAediting_285286	chr3_52695637_-	ncRNA_exonic
CAediting_285287	chr3_52695644_-	ncRNA_exonic
CAediting_285288	chr3_52695700_-	ncRNA_exonic
CAediting_285289	chr3_52695704_-	ncRNA_exonic
CAediting_285290	chr3_52695730_-	ncRNA_exonic
CAediting_285291	chr3_52695742_-	ncRNA_exonic
CAediting_285292	chr3_52695767_-	ncRNA_exonic
CAediting_285293	chr3_52695794_-	ncRNA_exonic
CAediting_285294	chr3_52695815_-	ncRNA_exonic
CAediting_285295	chr3_52695822_-	ncRNA_exonic
CAediting_285296	chr3_52695844_-	ncRNA_exonic
CAediting_285297	chr3_52695845_-	ncRNA_exonic
CAediting_285298	chr3_52695868_-	ncRNA_exonic
CAediting_285299	chr3_52695878_-	ncRNA_exonic
CAediting_285300	chr3_52695924_-	ncRNA_exonic
CAediting_285301	chr3_52695925_-	ncRNA_exonic
CAediting_285302	chr3_52696065_-	ncRNA_intronic
CAediting_285303	chr3_52698569_-	ncRNA_intronic
CAediting_285304	chr3_52700845_-	ncRNA_intronic
CAediting_285305	chr3_52700870_-	ncRNA_intronic
CAediting_285306	chr3_52700896_-	ncRNA_intronic
CAediting_285307	chr3_52700943_-	ncRNA_intronic
CAediting_285308	chr3_52700982_-	ncRNA_intronic
CAediting_285309	chr3_52700983_-	ncRNA_intronic
CAediting_285310	chr3_52701018_-	ncRNA_intronic
CAediting_285311	chr3_52701026_-	ncRNA_intronic
CAediting_285312	chr3_52701500_-	ncRNA_intronic
CAediting_285313	chr3_52701506_-	ncRNA_intronic
CAediting_285314	chr3_52701507_-	ncRNA_intronic
CAediting_285315	chr3_52701537_-	ncRNA_intronic
CAediting_285316	chr3_52701542_-	ncRNA_intronic
CAediting_285317	chr3_52702092_-	ncRNA_intronic
CAediting_285318	chr3_52702111_-	ncRNA_intronic
CAediting_285319	chr3_52702138_-	ncRNA_intronic
CAediting_285320	chr3_52702329_-	ncRNA_intronic
CAediting_285321	chr3_52702334_-	ncRNA_intronic
CAediting_285322	chr3_52702424_-	ncRNA_intronic
CAediting_285323	chr3_52702464_-	ncRNA_intronic
CAediting_285324	chr3_52702544_-	ncRNA_intronic
CAediting_285325	chr3_52702790_-	ncRNA_intronic
CAediting_285326	chr3_52702816_-	ncRNA_intronic
CAediting_285327	chr3_52702822_-	ncRNA_intronic
CAediting_285328	chr3_52702847_-	ncRNA_intronic
CAediting_285329	chr3_52702852_-	ncRNA_intronic
CAediting_285330	chr3_52702854_-	ncRNA_intronic
CAediting_285331	chr3_52702855_-	ncRNA_intronic
CAediting_285332	chr3_52702859_-	ncRNA_intronic
CAediting_285333	chr3_52702863_-	ncRNA_intronic
CAediting_285334	chr3_52702872_-	ncRNA_intronic
CAediting_285335	chr3_52702878_-	ncRNA_intronic
CAediting_285336	chr3_52702883_-	ncRNA_intronic
CAediting_285337	chr3_52702884_-	ncRNA_intronic
CAediting_285338	chr3_52702895_-	ncRNA_intronic
CAediting_285339	chr3_52702896_-	ncRNA_intronic
CAediting_285340	chr3_52702915_-	ncRNA_intronic
CAediting_285341	chr3_52702925_-	ncRNA_intronic
CAediting_285342	chr3_52702951_-	ncRNA_intronic
CAediting_285343	chr3_52702971_-	ncRNA_intronic
CAediting_285344	chr3_52702991_-	ncRNA_intronic
CAediting_285345	chr3_52703005_-	ncRNA_intronic
CAediting_285346	chr3_52703042_-	ncRNA_intronic
CAediting_285347	chr3_52703050_-	ncRNA_intronic
CAediting_285348	chr3_52703059_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_285303	chr3_52698569_-	SINE	Alu	AluSq
CAediting_285304	chr3_52700845_-	SINE	Alu	AluSg4
CAediting_285305	chr3_52700870_-	SINE	Alu	AluSg4
CAediting_285306	chr3_52700896_-	SINE	Alu	AluSg4
CAediting_285307	chr3_52700943_-	SINE	Alu	AluSg4
CAediting_285308	chr3_52700982_-	SINE	Alu	AluSg4
CAediting_285309	chr3_52700983_-	SINE	Alu	AluSg4
CAediting_285310	chr3_52701018_-	SINE	Alu	AluSg4
CAediting_285311	chr3_52701026_-	SINE	Alu	AluSg4
CAediting_285312	chr3_52701500_-	SINE	Alu	AluSg
CAediting_285313	chr3_52701506_-	SINE	Alu	AluSg
CAediting_285314	chr3_52701507_-	SINE	Alu	AluSg
CAediting_285315	chr3_52701537_-	SINE	Alu	AluSg
CAediting_285316	chr3_52701542_-	SINE	Alu	AluSg
CAediting_285317	chr3_52702092_-	SINE	Alu	FLAM_A
CAediting_285318	chr3_52702111_-	SINE	Alu	FLAM_A
CAediting_285319	chr3_52702138_-	SINE	Alu	FLAM_A
CAediting_285320	chr3_52702329_-	SINE	Alu	AluJb
CAediting_285321	chr3_52702334_-	SINE	Alu	AluJb
CAediting_285322	chr3_52702424_-	SINE	Alu	AluJb
CAediting_285323	chr3_52702464_-	SINE	Alu	AluJb
CAediting_285324	chr3_52702544_-	SINE	Alu	AluJb
CAediting_285325	chr3_52702790_-	SINE	Alu	AluSx
CAediting_285326	chr3_52702816_-	SINE	Alu	AluSx
CAediting_285327	chr3_52702822_-	SINE	Alu	AluSx
CAediting_285328	chr3_52702847_-	SINE	Alu	AluSx
CAediting_285329	chr3_52702852_-	SINE	Alu	AluSx
CAediting_285330	chr3_52702854_-	SINE	Alu	AluSx
CAediting_285331	chr3_52702855_-	SINE	Alu	AluSx
CAediting_285332	chr3_52702859_-	SINE	Alu	AluSx
CAediting_285333	chr3_52702863_-	SINE	Alu	AluSx
CAediting_285334	chr3_52702872_-	SINE	Alu	AluSx
CAediting_285335	chr3_52702878_-	SINE	Alu	AluSx
CAediting_285336	chr3_52702883_-	SINE	Alu	AluSx
CAediting_285337	chr3_52702884_-	SINE	Alu	AluSx
CAediting_285338	chr3_52702895_-	SINE	Alu	AluSx
CAediting_285339	chr3_52702896_-	SINE	Alu	AluSx
CAediting_285340	chr3_52702915_-	SINE	Alu	AluSx
CAediting_285341	chr3_52702925_-	SINE	Alu	AluSx
CAediting_285342	chr3_52702951_-	SINE	Alu	AluSx
CAediting_285343	chr3_52702971_-	SINE	Alu	AluSx
CAediting_285344	chr3_52702991_-	SINE	Alu	AluSx
CAediting_285345	chr3_52703005_-	SINE	Alu	AluSx
CAediting_285346	chr3_52703042_-	SINE	Alu	AluSx
CAediting_285347	chr3_52703050_-	SINE	Alu	AluSx
CAediting_285348	chr3_52703059_-	SINE	Alu	AluSx

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RNA A-to-I editing events in the alternative splicing sites for GLT8D1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
IR	CAediting_285274	chr3_52695180_-	52695179:52695187	5SS	0+5i	AAGTAGAAT	-10.31	AAGTAGAGT	-6.21
IR	CAediting_285275	chr3_52695228_-	52695227:52695249	3SS	2+0i	TTATCGTATTTTATCAACAGCAC	7.51	TTATCGTATTTTATCAACAGCGC	8.1
IR	CAediting_285278	chr3_52695304_-	52695300:52695322	3SS	0+2i	TTGTTTTCTGTCCCACCAAGAGA	3.72	TTGTTTTCTGTCCCACCAGGAGA	-4.23
ES	CAediting_285284	chr3_52695417_-	52695414:52695422	5SS	0+3i	GAGTAAGTA	-12.24	GAGTAGGTA	-18.6
ES	CAediting_285284	chr3_52695417_-	52695410:52695418	5SS	2+0i	AAGTATGTA	-17.04	AGGTATGTA	-24.67
IR	CAediting_285284	chr3_52695417_-	52695414:52695422	5SS	0+3i	GAGTAAGTA	-12.24	GAGTAGGTA	-18.6
IR	CAediting_285284	chr3_52695417_-	52695410:52695418	5SS	2+0i	AAGTATGTA	-17.04	AGGTATGTA	-24.67
IR	CAediting_285300	chr3_52695924_-	52695921:52695929	5SS	0+3i	AGGTAAATT	-10.06	AGGTAGATT	-13.68
IR	CAediting_285301	chr3_52695925_-	52695921:52695929	5SS	0+2i	AGGTAAATT	-10.06	AGGTGAATT	-9.53

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000016864.15.GLT8D1.

Correlation between RNA A-to-I editing and PSI for ENSG00000016864.15.GLT8D1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GLT8D1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for GLT8D1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for GLT8D1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000478968	hsa-miR-3925-3p	52694601	52694608	8mer-1a	52694601	52694623	150.00	-16.31
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000478968	hsa-miR-4768-5p	52694598	52694604	7mer-m8	52694597	52694622	150.00	-15.37
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000478968	hsa-miR-6809-3p	52694598	52694603	6mer	52694597	52694617	145.00	-19.12
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000478968	hsa-miR-6833-3p	52694598	52694604	7mer-m8	52694597	52694615	144.00	-17.01
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000478968	hsa-miR-6873-3p	52694598	52694604	7mer-1a	52694598	52694621	142.00	-17.51
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000478968	hsa-miR-942-5p	52694596	52694603	8mer-1a	52694596	52694622	146.00	-16.80
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000394783	hsa-miR-3925-3p	52694601	52694608	8mer-1a	52694601	52694623	150.00	-16.31
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000394783	hsa-miR-4768-5p	52694598	52694604	7mer-m8	52694597	52694622	150.00	-15.37
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000394783	hsa-miR-6809-3p	52694598	52694603	6mer	52694597	52694617	145.00	-19.12
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000394783	hsa-miR-6833-3p	52694598	52694604	7mer-m8	52694597	52694615	144.00	-17.01
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000394783	hsa-miR-6873-3p	52694598	52694604	7mer-1a	52694598	52694621	142.00	-17.51
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000394783	hsa-miR-942-5p	52694596	52694603	8mer-1a	52694596	52694622	146.00	-16.80
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000491606	hsa-miR-3925-3p	52694601	52694608	8mer-1a	52694601	52694623	150.00	-16.31
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000491606	hsa-miR-4768-5p	52694598	52694604	7mer-m8	52694597	52694622	150.00	-15.37
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000491606	hsa-miR-6809-3p	52694598	52694603	6mer	52694597	52694617	145.00	-19.12
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000491606	hsa-miR-6833-3p	52694598	52694604	7mer-m8	52694597	52694615	144.00	-17.01
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000491606	hsa-miR-6873-3p	52694598	52694604	7mer-1a	52694598	52694621	142.00	-17.51
CAediting_285263	chr3_52694602_-	ENSG00000016864.15	ENST00000491606	hsa-miR-942-5p	52694596	52694603	8mer-1a	52694596	52694622	146.00	-16.80
CAediting_285264	chr3_52694715_-	ENSG00000016864.15	ENST00000478968	hsa-miR-3675-3p	52694711	52694717	7mer-m8	52694710	52694731	144.00	-13.24
CAediting_285264	chr3_52694715_-	ENSG00000016864.15	ENST00000478968	hsa-miR-4684-5p	52694712	52694718	7mer-m8	52694711	52694732	160.00	-16.12
CAediting_285264	chr3_52694715_-	ENSG00000016864.15	ENST00000394783	hsa-miR-3675-3p	52694711	52694717	7mer-m8	52694710	52694731	144.00	-13.24
CAediting_285264	chr3_52694715_-	ENSG00000016864.15	ENST00000394783	hsa-miR-4684-5p	52694712	52694718	7mer-m8	52694711	52694732	160.00	-16.12
CAediting_285264	chr3_52694715_-	ENSG00000016864.15	ENST00000491606	hsa-miR-3675-3p	52694711	52694717	7mer-m8	52694710	52694731	144.00	-13.24
CAediting_285264	chr3_52694715_-	ENSG00000016864.15	ENST00000491606	hsa-miR-4684-5p	52694712	52694718	7mer-m8	52694711	52694732	160.00	-16.12
CAediting_285264	chr3_52694715_-	ENSG00000016864.15	ENST00000481643	hsa-miR-3675-3p	52694711	52694717	7mer-m8	52694710	52694731	144.00	-13.24
CAediting_285264	chr3_52694715_-	ENSG00000016864.15	ENST00000481643	hsa-miR-4684-5p	52694712	52694718	7mer-m8	52694711	52694732	160.00	-16.12
CAediting_285262	chr3_52694589_-	ENSG00000016864.15	ENST00000478968	hsa-miR-449b-3p	52694583	52694590	8mer-1a	52694583	52694604	142.00	-10.52
CAediting_285262	chr3_52694589_-	ENSG00000016864.15	ENST00000394783	hsa-miR-449b-3p	52694583	52694590	8mer-1a	52694583	52694604	142.00	-10.52
CAediting_285262	chr3_52694589_-	ENSG00000016864.15	ENST00000491606	hsa-miR-449b-3p	52694583	52694590	8mer-1a	52694583	52694604	142.00	-10.52

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_285265	chr3_52694761_-	ENSG00000016864.15	ENST00000478968	hsa-miR-1256	52694757	52694763	7mer-m8	52694756	52694777	151	-19.03
CAediting_285266	chr3_52694762_-	ENSG00000016864.15	ENST00000478968	hsa-miR-1256	52694757	52694763	7mer-m8	52694756	52694777	151	-19.03
CAediting_285261	chr3_52694554_-	ENSG00000016864.15	ENST00000478968	hsa-miR-2052	52694552	52694558	7mer-m8	52694551	52694572	151	-6.51
CAediting_285262	chr3_52694589_-	ENSG00000016864.15	ENST00000478968	hsa-miR-3074-3p	52694588	52694594	7mer-m8	52694587	52694608	147	-9.82
CAediting_285261	chr3_52694554_-	ENSG00000016864.15	ENST00000478968	hsa-miR-4328	52694550	52694556	7mer-m8	52694549	52694565	140	-6.68
CAediting_285266	chr3_52694762_-	ENSG00000016864.15	ENST00000478968	hsa-miR-7843-3p	52694761	52694768	8mer-1a	52694761	52694782	145	-16.9
CAediting_285265	chr3_52694761_-	ENSG00000016864.15	ENST00000394783	hsa-miR-1256	52694757	52694763	7mer-m8	52694756	52694777	151	-19.03
CAediting_285266	chr3_52694762_-	ENSG00000016864.15	ENST00000394783	hsa-miR-1256	52694757	52694763	7mer-m8	52694756	52694777	151	-19.03
CAediting_285261	chr3_52694554_-	ENSG00000016864.15	ENST00000394783	hsa-miR-2052	52694552	52694558	7mer-m8	52694551	52694572	151	-6.51
CAediting_285262	chr3_52694589_-	ENSG00000016864.15	ENST00000394783	hsa-miR-3074-3p	52694588	52694594	7mer-m8	52694587	52694608	147	-9.82
CAediting_285261	chr3_52694554_-	ENSG00000016864.15	ENST00000394783	hsa-miR-4328	52694550	52694556	7mer-m8	52694549	52694565	140	-6.68
CAediting_285266	chr3_52694762_-	ENSG00000016864.15	ENST00000394783	hsa-miR-7843-3p	52694761	52694768	8mer-1a	52694761	52694782	145	-16.9
CAediting_285265	chr3_52694761_-	ENSG00000016864.15	ENST00000491606	hsa-miR-1256	52694757	52694763	7mer-m8	52694756	52694777	151	-19.03
CAediting_285266	chr3_52694762_-	ENSG00000016864.15	ENST00000491606	hsa-miR-1256	52694757	52694763	7mer-m8	52694756	52694777	151	-19.03
CAediting_285261	chr3_52694554_-	ENSG00000016864.15	ENST00000491606	hsa-miR-2052	52694552	52694558	7mer-m8	52694551	52694572	151	-6.51
CAediting_285262	chr3_52694589_-	ENSG00000016864.15	ENST00000491606	hsa-miR-3074-3p	52694588	52694594	7mer-m8	52694587	52694608	147	-9.82
CAediting_285261	chr3_52694554_-	ENSG00000016864.15	ENST00000491606	hsa-miR-4328	52694550	52694556	7mer-m8	52694549	52694565	140	-6.68
CAediting_285266	chr3_52694762_-	ENSG00000016864.15	ENST00000491606	hsa-miR-7843-3p	52694761	52694768	8mer-1a	52694761	52694782	145	-16.9
CAediting_285275	chr3_52695228_-	ENSG00000016864.15	ENST00000481643	hsa-miR-512-3p	52695226	52695232	7mer-m8	52695225	52695247	149	-13.74
CAediting_285275	chr3_52695228_-	ENSG00000016864.15	ENST00000481643	hsa-miR-512-3p	52695226	52695232	7mer-m8	52695225	52695247	149	-13.74
CAediting_285265	chr3_52694761_-	ENSG00000016864.15	ENST00000481643	hsa-miR-1256	52694757	52694763	7mer-m8	52694756	52694777	151	-19.03
CAediting_285266	chr3_52694762_-	ENSG00000016864.15	ENST00000481643	hsa-miR-1256	52694757	52694763	7mer-m8	52694756	52694777	151	-19.03
CAediting_285266	chr3_52694762_-	ENSG00000016864.15	ENST00000481643	hsa-miR-7843-3p	52694761	52694768	8mer-1a	52694761	52694782	145	-16.9

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000016864.15	ENST00000478968	hsa-miR-624-3p	52694696	52694701	6mer	52694695	52694717	140	-14.37
CAediting_980496	chr14_31014685_-	ENSG00000016864.15	ENST00000394783	hsa-miR-624-3p	52694696	52694701	6mer	52694695	52694717	140	-14.37
CAediting_980496	chr14_31014685_-	ENSG00000016864.15	ENST00000491606	hsa-miR-624-3p	52694696	52694701	6mer	52694695	52694717	140	-14.37
CAediting_980496	chr14_31014685_-	ENSG00000016864.15	ENST00000481643	hsa-miR-624-3p	52694696	52694701	6mer	52694695	52694717	140	-14.37
CAediting_1351755	chr19_40282625_-	ENSG00000016864.15	ENST00000478968	hsa-miR-641	52694650	52694656	7mer-m8	52694649	52694671	157	-16.98
CAediting_1351755	chr19_40282625_-	ENSG00000016864.15	ENST00000394783	hsa-miR-641	52694650	52694656	7mer-m8	52694649	52694671	157	-16.98
CAediting_1351755	chr19_40282625_-	ENSG00000016864.15	ENST00000491606	hsa-miR-641	52694650	52694656	7mer-m8	52694649	52694671	157	-16.98
CAediting_468389	chr6_31355314_-	ENSG00000016864.15	ENST00000481643	hsa-miR-6891-5p	52695253	52695259	7mer-m8	52695252	52695271	144	-19.53

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for GLT8D1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000266014.8	protein_coding
ENST00000394783.6	protein_coding
ENST00000478968.5	protein_coding
ENST00000491606.4	protein_coding
ENST00000481643.4	nonsense_mediated_decay
ENST00000407584.6	protein_coding
ENST00000463827.1	processed_transcript
ENST00000484163.4	retained_intron
ENST00000480080.1	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_285261	ENST00000266014.8	chr3_52694554_-	-756.80	-756.70	-758.70
CAediting_285262	ENST00000266014.8	chr3_52694589_-	-759.50	-756.70	-758.70
CAediting_285263	ENST00000266014.8	chr3_52694602_-	-756.70	-756.70	-758.70
CAediting_285264	ENST00000266014.8	chr3_52694715_-	-756.70	-756.70	-758.70
CAediting_285265	ENST00000266014.8	chr3_52694761_-	-756.70	-756.70	-758.70
CAediting_285266	ENST00000266014.8	chr3_52694762_-	-756.70	-756.70	-758.70
CAediting_285267	ENST00000266014.8	chr3_52695014_-	-756.20	-756.70	-758.70
CAediting_285275	ENST00000266014.8	chr3_52695228_-	-756.30	-756.70	-758.70
CAediting_285276	ENST00000266014.8	chr3_52695286_-	-756.00	-756.70	-758.70
CAediting_285277	ENST00000266014.8	chr3_52695291_-	-756.70	-756.70	-758.70
CAediting_285261	ENST00000394783.6	chr3_52694554_-	-458.00	-457.90	-459.90
CAediting_285262	ENST00000394783.6	chr3_52694589_-	-458.10	-457.90	-459.90
CAediting_285263	ENST00000394783.6	chr3_52694602_-	-460.90	-457.90	-459.90
CAediting_285264	ENST00000394783.6	chr3_52694715_-	-458.00	-457.90	-459.90
CAediting_285265	ENST00000394783.6	chr3_52694761_-	-457.90	-457.90	-459.90
CAediting_285266	ENST00000394783.6	chr3_52694762_-	-457.90	-457.90	-459.90
CAediting_285267	ENST00000394783.6	chr3_52695014_-	-457.50	-457.90	-459.90
CAediting_285275	ENST00000394783.6	chr3_52695228_-	-457.50	-457.90	-459.90
CAediting_285276	ENST00000394783.6	chr3_52695286_-	-457.20	-457.90	-459.90
CAediting_285277	ENST00000394783.6	chr3_52695291_-	-457.90	-457.90	-459.90
CAediting_285261	ENST00000478968.5	chr3_52694554_-	-553.30	-553.30	-554.30
CAediting_285262	ENST00000478968.5	chr3_52694589_-	-553.30	-553.30	-554.30
CAediting_285263	ENST00000478968.5	chr3_52694602_-	-553.30	-553.30	-554.30
CAediting_285264	ENST00000478968.5	chr3_52694715_-	-553.30	-553.30	-554.30
CAediting_285265	ENST00000478968.5	chr3_52694761_-	-553.30	-553.30	-554.30
CAediting_285266	ENST00000478968.5	chr3_52694762_-	-553.30	-553.30	-554.30
CAediting_285267	ENST00000478968.5	chr3_52695014_-	-552.80	-553.30	-554.30
CAediting_285275	ENST00000478968.5	chr3_52695228_-	-552.90	-553.30	-554.30
CAediting_285276	ENST00000478968.5	chr3_52695286_-	-552.60	-553.30	-554.30
CAediting_285277	ENST00000478968.5	chr3_52695291_-	-553.30	-553.30	-554.30
CAediting_285261	ENST00000491606.4	chr3_52694554_-	-455.00	-455.00	-457.10
CAediting_285262	ENST00000491606.4	chr3_52694589_-	-455.50	-455.00	-457.10
CAediting_285263	ENST00000491606.4	chr3_52694602_-	-455.00	-455.00	-457.10
CAediting_285264	ENST00000491606.4	chr3_52694715_-	-455.00	-455.00	-457.10
CAediting_285265	ENST00000491606.4	chr3_52694761_-	-455.00	-455.00	-457.10
CAediting_285266	ENST00000491606.4	chr3_52694762_-	-455.00	-455.00	-457.10
CAediting_285267	ENST00000491606.4	chr3_52695014_-	-454.50	-455.00	-457.10
CAediting_285275	ENST00000491606.4	chr3_52695228_-	-454.60	-455.00	-457.10
CAediting_285276	ENST00000491606.4	chr3_52695286_-	-454.30	-455.00	-457.10
CAediting_285277	ENST00000491606.4	chr3_52695291_-	-455.00	-455.00	-457.10
CAediting_285264	ENST00000481643.4	chr3_52694715_-	-224.40	-220.60	-223.70
CAediting_285265	ENST00000481643.4	chr3_52694761_-	-222.20	-220.60	-223.70
CAediting_285266	ENST00000481643.4	chr3_52694762_-	-220.60	-220.60	-223.70
CAediting_285267	ENST00000481643.4	chr3_52695014_-	-220.60	-220.60	-223.70
CAediting_285275	ENST00000481643.4	chr3_52695228_-	-220.60	-220.60	-223.70
CAediting_285276	ENST00000481643.4	chr3_52695286_-	-219.90	-220.60	-223.70
CAediting_285277	ENST00000481643.4	chr3_52695291_-	-220.60	-220.60	-223.70
CAediting_285267	ENST00000407584.6	chr3_52695014_-	-393.10	-393.60	-392.00
CAediting_285275	ENST00000407584.6	chr3_52695228_-	-393.20	-393.60	-392.00
CAediting_285276	ENST00000407584.6	chr3_52695286_-	-392.90	-393.60	-392.00
CAediting_285277	ENST00000407584.6	chr3_52695291_-	-393.60	-393.60	-392.00
CAediting_285267	ENST00000463827.1	chr3_52695014_-	-209.20	-209.10	-208.50
CAediting_285275	ENST00000463827.1	chr3_52695228_-	-209.10	-209.10	-208.50
CAediting_285276	ENST00000463827.1	chr3_52695286_-	-208.40	-209.10	-208.50
CAediting_285277	ENST00000463827.1	chr3_52695291_-	-209.10	-209.10	-208.50
CAediting_285267	ENST00000484163.4	chr3_52695014_-	-538.10	-532.70	-554.40
CAediting_285275	ENST00000484163.4	chr3_52695228_-	-532.30	-532.70	-554.40
CAediting_285276	ENST00000484163.4	chr3_52695286_-	-532.80	-532.70	-554.40
CAediting_285277	ENST00000484163.4	chr3_52695291_-	-534.60	-532.70	-554.40
CAediting_285278	ENST00000484163.4	chr3_52695304_-	-536.80	-532.70	-554.40
CAediting_285279	ENST00000484163.4	chr3_52695331_-	-533.30	-532.70	-554.40
CAediting_285280	ENST00000484163.4	chr3_52695341_-	-533.00	-532.70	-554.40
CAediting_285281	ENST00000484163.4	chr3_52695348_-	-532.40	-532.70	-554.40
CAediting_285282	ENST00000484163.4	chr3_52695382_-	-535.20	-532.70	-554.40
CAediting_285283	ENST00000484163.4	chr3_52695409_-	-534.30	-532.70	-554.40
CAediting_285284	ENST00000484163.4	chr3_52695417_-	-538.10	-532.70	-554.40
CAediting_285285	ENST00000484163.4	chr3_52695622_-	-534.00	-532.70	-554.40
CAediting_285286	ENST00000484163.4	chr3_52695637_-	-536.00	-532.70	-554.40
CAediting_285287	ENST00000484163.4	chr3_52695644_-	-533.60	-532.70	-554.40
CAediting_285288	ENST00000484163.4	chr3_52695700_-	-536.90	-532.70	-554.40
CAediting_285289	ENST00000484163.4	chr3_52695704_-	-532.90	-532.70	-554.40
CAediting_285290	ENST00000484163.4	chr3_52695730_-	-533.60	-532.70	-554.40
CAediting_285291	ENST00000484163.4	chr3_52695742_-	-533.70	-532.70	-554.40
CAediting_285292	ENST00000484163.4	chr3_52695767_-	-534.90	-532.70	-554.40
CAediting_285293	ENST00000484163.4	chr3_52695794_-	-533.20	-532.70	-554.40
CAediting_285294	ENST00000484163.4	chr3_52695815_-	-533.40	-532.70	-554.40
CAediting_285295	ENST00000484163.4	chr3_52695822_-	-534.10	-532.70	-554.40
CAediting_285296	ENST00000484163.4	chr3_52695844_-	-532.70	-532.70	-554.40
CAediting_285297	ENST00000484163.4	chr3_52695845_-	-532.40	-532.70	-554.40
CAediting_285298	ENST00000484163.4	chr3_52695868_-	-534.30	-532.70	-554.40
CAediting_285299	ENST00000484163.4	chr3_52695878_-	-532.40	-532.70	-554.40
CAediting_285300	ENST00000484163.4	chr3_52695924_-	-532.80	-532.70	-554.40
CAediting_285301	ENST00000484163.4	chr3_52695925_-	-532.80	-532.70	-554.40
CAediting_285276	ENST00000480080.1	chr3_52695286_-	-215.50	-215.40	-231.50
CAediting_285277	ENST00000480080.1	chr3_52695291_-	-215.30	-215.40	-231.50
CAediting_285278	ENST00000480080.1	chr3_52695304_-	-215.40	-215.40	-231.50
CAediting_285279	ENST00000480080.1	chr3_52695331_-	-215.80	-215.40	-231.50
CAediting_285280	ENST00000480080.1	chr3_52695341_-	-215.70	-215.40	-231.50
CAediting_285281	ENST00000480080.1	chr3_52695348_-	-215.10	-215.40	-231.50
CAediting_285282	ENST00000480080.1	chr3_52695382_-	-217.50	-215.40	-231.50
CAediting_285283	ENST00000480080.1	chr3_52695409_-	-215.40	-215.40	-231.50
CAediting_285284	ENST00000480080.1	chr3_52695417_-	-215.30	-215.40	-231.50
CAediting_285285	ENST00000480080.1	chr3_52695622_-	-216.70	-215.40	-231.50
CAediting_285286	ENST00000480080.1	chr3_52695637_-	-215.40	-215.40	-231.50
CAediting_285287	ENST00000480080.1	chr3_52695644_-	-216.30	-215.40	-231.50
CAediting_285288	ENST00000480080.1	chr3_52695700_-	-215.90	-215.40	-231.50
CAediting_285289	ENST00000480080.1	chr3_52695704_-	-215.60	-215.40	-231.50
CAediting_285290	ENST00000480080.1	chr3_52695730_-	-216.30	-215.40	-231.50
CAediting_285291	ENST00000480080.1	chr3_52695742_-	-216.40	-215.40	-231.50
CAediting_285292	ENST00000480080.1	chr3_52695767_-	-217.20	-215.40	-231.50
CAediting_285293	ENST00000480080.1	chr3_52695794_-	-215.60	-215.40	-231.50
CAediting_285294	ENST00000480080.1	chr3_52695815_-	-216.10	-215.40	-231.50
CAediting_285295	ENST00000480080.1	chr3_52695822_-	-216.50	-215.40	-231.50
CAediting_285296	ENST00000480080.1	chr3_52695844_-	-215.40	-215.40	-231.50
CAediting_285297	ENST00000480080.1	chr3_52695845_-	-215.10	-215.40	-231.50
CAediting_285298	ENST00000480080.1	chr3_52695868_-	-217.00	-215.40	-231.50
CAediting_285299	ENST00000480080.1	chr3_52695878_-	-215.10	-215.40	-231.50
CAediting_285300	ENST00000480080.1	chr3_52695924_-	-215.50	-215.40	-231.50
CAediting_285301	ENST00000480080.1	chr3_52695925_-	-215.50	-215.40	-231.50

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Relation with ADAR for GLT8D1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

Top

Relation with cancer stages for GLT8D1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for GLT8D1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for GLT8D1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for GLT8D1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
GLT8D1	C0002736	Amyotrophic Lateral Sclerosis	1	ORPHANET
GLT8D1	C0023893	Liver Cirrhosis, Experimental	1	CTD_human
GLT8D1	C0041696	Unipolar Depression	1	PSYGENET
GLT8D1	C1269683	Major Depressive Disorder	1	PSYGENET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene