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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: NHP2 (CAeditome ID:55651) |
Gene summary for NHP2 |
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Gene information | Gene symbol | NHP2 | Gene ID | 55651 |
Gene name | NHP2 ribonucleoprotein | |
Synonyms | DKCB2|NHP2P|NOLA2 | |
Cytomap | 5q35.3 | |
Type of gene | protein-coding | |
Description | H/ACA ribonucleoprotein complex subunit 2NHP2 ribonucleoprotein homologNHP2-like proteinnucleolar protein family A, member 2 (H/ACA small nucleolar RNPs)snoRNP protein NHP2 | |
Modification date | 20210518 | |
UniProtAcc | Q9NX24 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
NHP2 | GO:0007004 | H/ACA ribonucleoprotein complex subunit 2 | 29695869 |
NHP2 | GO:0005697 | H/ACA ribonucleoprotein complex subunit 2 | 18082603 |
NHP2 | GO:0005697 | H/ACA ribonucleoprotein complex subunit 2 | 29695869 |
NHP2 | GO:0031429 | H/ACA ribonucleoprotein complex subunit 2 | 18082603 |
NHP2 | GO:0090661 | H/ACA ribonucleoprotein complex subunit 2 | 18082603 |
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RNA A-to-I events for NHP2 |
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CAediting_452546(178150582, -), CAediting_452547(178150586, -), CAediting_452548(178150602, -), CAediting_452549(178150629, -), CAediting_452550(178150639, -), CAediting_452551(178150662, -), CAediting_452552(178150678, -), CAediting_452553(178152553, -), CAediting_452554(178152567, -), CAediting_452555(178152568, -), CAediting_452556(178152971, -), |
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RNA editing positional annotations for NHP2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_452552 | chr5_178150678_- | nonsynonymous SNV | ENST00000514354.4 | c.A368G | p.Q123R | D | . | N |
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CAeditome ID | Position | Variant type |
CAediting_452546 | chr5_178150582_- | UTR3 |
CAediting_452547 | chr5_178150586_- | UTR3 |
CAediting_452548 | chr5_178150602_- | UTR3 |
CAediting_452549 | chr5_178150629_- | UTR3 |
CAediting_452550 | chr5_178150639_- | exonic |
CAediting_452551 | chr5_178150662_- | exonic |
CAediting_452552 | chr5_178150678_- | exonic |
CAediting_452553 | chr5_178152553_- | intronic |
CAediting_452554 | chr5_178152567_- | intronic |
CAediting_452555 | chr5_178152568_- | intronic |
CAediting_452556 | chr5_178152971_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_452546 | chr5_178150582_- | SINE | Alu | AluJr |
CAediting_452547 | chr5_178150586_- | SINE | Alu | AluJr |
CAediting_452548 | chr5_178150602_- | SINE | Alu | AluJr |
CAediting_452549 | chr5_178150629_- | SINE | Alu | AluJr |
CAediting_452550 | chr5_178150639_- | SINE | Alu | AluJr |
CAediting_452551 | chr5_178150662_- | SINE | Alu | AluJr |
CAediting_452552 | chr5_178150678_- | SINE | Alu | AluJr |
CAediting_452556 | chr5_178152971_- | SINE | Alu | AluJo |
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RNA A-to-I editing events in the alternative splicing sites for NHP2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_452546 | chr5_178150582_- | 178150575:178150583 | 5SS | 2+0i | AAGTGAGAC | -9.08 | AGGTGAGAC | -14.41 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NHP2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for NHP2 |
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The effects of the RNA editing to the miRNA binding sites for NHP2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_452548 | chr5_178150602_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-6716-3p | 178150601 | 178150607 | 7mer-m8 | 178150600 | 178150619 | 156.00 | -23.75 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_452548 | chr5_178150602_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-12113 | 178150601 | 178150607 | 7mer-m8 | 178150600 | 178150620 | 152 | -18 |
CAediting_452550 | chr5_178150639_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-150-5p | 178150638 | 178150644 | 7mer-m8 | 178150637 | 178150660 | 143 | -16.75 |
CAediting_452552 | chr5_178150678_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-1587 | 178150678 | 178150684 | 7mer-m8 | 178150677 | 178150696 | 152 | -23.27 |
CAediting_452552 | chr5_178150678_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-3620-5p | 178150678 | 178150684 | 7mer-m8 | 178150677 | 178150698 | 152 | -25.1 |
CAediting_452551 | chr5_178150662_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-3934-5p | 178150658 | 178150664 | 7mer-m8 | 178150657 | 178150679 | 151 | -21.2 |
CAediting_452549 | chr5_178150629_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-4421 | 178150626 | 178150633 | 8mer-1a | 178150626 | 178150646 | 146 | -16.75 |
CAediting_452548 | chr5_178150602_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-4539 | 178150601 | 178150607 | 7mer-m8 | 178150600 | 178150624 | 151 | -20.62 |
CAediting_452551 | chr5_178150662_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-552-3p | 178150656 | 178150663 | 8mer-1a | 178150656 | 178150675 | 142 | -13.71 |
CAediting_452549 | chr5_178150629_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-660-3p | 178150623 | 178150630 | 8mer-1a | 178150623 | 178150643 | 147 | -18.95 |
CAediting_452552 | chr5_178150678_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-661 | 178150675 | 178150681 | 7mer-m8 | 178150674 | 178150694 | 146 | -25.02 |
CAediting_452552 | chr5_178150678_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-6720-3p | 178150673 | 178150679 | 7mer-m8 | 178150672 | 178150689 | 146 | -19.14 |
CAediting_452552 | chr5_178150678_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-6742-3p | 178150676 | 178150681 | 6mer | 178150675 | 178150697 | 141 | -24.58 |
CAediting_452550 | chr5_178150639_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-6778-3p | 178150636 | 178150642 | 7mer-m8 | 178150635 | 178150656 | 150 | -16.48 |
CAediting_452550 | chr5_178150639_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-6878-3p | 178150633 | 178150640 | 8mer-1a | 178150633 | 178150653 | 142 | -17.22 |
CAediting_452552 | chr5_178150678_- | ENSG00000145912.7 | ENST00000502263 | hsa-miR-939-3p | 178150676 | 178150682 | 7mer-m8 | 178150675 | 178150694 | 149 | -20.06 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for NHP2 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000502263.1 | protein_coding | ![]() | ![]() |
ENST00000514354.4 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_452546 | ENST00000502263.1 | chr5_178150582_- | -171.10 | -171.20 | -178.40 |
CAediting_452547 | ENST00000502263.1 | chr5_178150586_- | -171.20 | -171.20 | -178.40 |
CAediting_452548 | ENST00000502263.1 | chr5_178150602_- | -170.50 | -171.20 | -178.40 |
CAediting_452549 | ENST00000502263.1 | chr5_178150629_- | -169.80 | -171.20 | -178.40 |
CAediting_452550 | ENST00000502263.1 | chr5_178150639_- | -174.60 | -171.20 | -178.40 |
CAediting_452551 | ENST00000502263.1 | chr5_178150662_- | -171.20 | -171.20 | -178.40 |
CAediting_452552 | ENST00000502263.1 | chr5_178150678_- | -172.40 | -171.20 | -178.40 |
CAediting_452550 | ENST00000514354.4 | chr5_178150639_- | -164.80 | -164.70 | -168.80 |
CAediting_452551 | ENST00000514354.4 | chr5_178150662_- | -168.70 | -164.70 | -168.80 |
CAediting_452552 | ENST00000514354.4 | chr5_178150678_- | -164.70 | -164.70 | -168.80 |
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Relation with ADAR for NHP2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for NHP2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for NHP2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for NHP2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NHP2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
NHP2 | C0265965 | Dyskeratosis Congenita | 4 | GENOMICS_ENGLAND |
NHP2 | C3151441 | DYSKERATOSIS CONGENITA, AUTOSOMAL RECESSIVE 2 | 4 | CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT |
NHP2 | C1846142 | HOYERAAL-HREIDARSSON SYNDROME | 1 | GENOMICS_ENGLAND |