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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TCP11L1 (CAeditome ID:55346)

Gene summary for TCP11L1

check button Gene summary
Gene informationGene symbol

TCP11L1

Gene ID

55346

Gene namet-complex 11 like 1
SynonymsdJ85M6.3
Cytomap

11p13

Type of geneprotein-coding
DescriptionT-complex protein 11-like protein 1t-complex 11, testis-specific-like 1
Modification date20210518
UniProtAcc

Q9NUJ3

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TCP11L1

GO:0005874

T-complex protein 11-like protein 1

21525035


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RNA A-to-I events for TCP11L1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000176148.14
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_804295(33041636, +), CAediting_804296(33041659, +), CAediting_804297(33041660, +), CAediting_804298(33041671, +), CAediting_804299(33041672, +), CAediting_804300(33042205, +), CAediting_804301(33042260, +), CAediting_804302(33042270, +), CAediting_804303(33042272, +), CAediting_804304(33042337, +), CAediting_804305(33042856, +), CAediting_804306(33042865, +), CAediting_804307(33042866, +), CAediting_804308(33042879, +), CAediting_804309(33042880, +), CAediting_804310(33042889, +), CAediting_804311(33042943, +), CAediting_804312(33042945, +), CAediting_804313(33042946, +), CAediting_804314(33043001, +), CAediting_804315(33043010, +), CAediting_804316(33043011, +), CAediting_804317(33043012, +), CAediting_804318(33043016, +), CAediting_804319(33043055, +), CAediting_804320(33043088, +), CAediting_804321(33045077, +), CAediting_804322(33045153, +), CAediting_804323(33047115, +), CAediting_804324(33047120, +), CAediting_804325(33049121, +), CAediting_804326(33049156, +), CAediting_804327(33052847, +), CAediting_804328(33052850, +), CAediting_804329(33052872, +), CAediting_804330(33052913, +), CAediting_804331(33053262, +), CAediting_804332(33069706, +), CAediting_804333(33069709, +), CAediting_804334(33070135, +), CAediting_804335(33070144, +), CAediting_804336(33070170, +), CAediting_804337(33070183, +), CAediting_804338(33070187, +), CAediting_804339(33070196, +), CAediting_804340(33070226, +), CAediting_804341(33070268, +), CAediting_804342(33070587, +), CAediting_804343(33070591, +), CAediting_804344(33070596, +), CAediting_804345(33070881, +), CAediting_804346(33070882, +), CAediting_804347(33070908, +), CAediting_804348(33070927, +), CAediting_804349(33073863, +), CAediting_804350(33073924, +), CAediting_804351(33074657, +), CAediting_804352(33074674, +), CAediting_804353(33074675, +), CAediting_804354(33074680, +), CAediting_804355(33074696, +), CAediting_804356(33074701, +), CAediting_804357(33074715, +), CAediting_804358(33074716, +), CAediting_804359(33074720, +), CAediting_804360(33074728, +), CAediting_804361(33074729, +), CAediting_804362(33074739, +), CAediting_804363(33074744, +), CAediting_804364(33074746, +), CAediting_804365(33074748, +), CAediting_804366(33074752, +), CAediting_804367(33074765, +), CAediting_804368(33074767, +), CAediting_804369(33074768, +), CAediting_804370(33074769, +), CAediting_804371(33074770, +), CAediting_804372(33074774, +), CAediting_804373(33074776, +), CAediting_804374(33074780, +), CAediting_804375(33074781, +), CAediting_804376(33074782, +), CAediting_804377(33074783, +), CAediting_804378(33074786, +), CAediting_804379(33074802, +), CAediting_804380(33074804, +), CAediting_804381(33074806, +), CAediting_804382(33074818, +), CAediting_804383(33074825, +), CAediting_804384(33074836, +), CAediting_804385(33074840, +), CAediting_804386(33074841, +), CAediting_804387(33074842, +), CAediting_804388(33074843, +), CAediting_804389(33074849, +), CAediting_804390(33074859, +), CAediting_804391(33074862, +), CAediting_804392(33074875, +), CAediting_804393(33074880, +), CAediting_804394(33074883, +), CAediting_804395(33074886, +), CAediting_804396(33074889, +), CAediting_804397(33074894, +), CAediting_804398(33074904, +), CAediting_804399(33074949, +), CAediting_804400(33075096, +), CAediting_804401(33075138, +), CAediting_804402(33075221, +), CAediting_804403(33075229, +), CAediting_804404(33075230, +), CAediting_804405(33075236, +), CAediting_804406(33075250, +), CAediting_804407(33075254, +), CAediting_804408(33075261, +), CAediting_804409(33075275, +), CAediting_804410(33075285, +), CAediting_804411(33075290, +), CAediting_804412(33075291, +), CAediting_804413(33075310, +), CAediting_804414(33075311, +), CAediting_804415(33075315, +), CAediting_804416(33075328, +), CAediting_804417(33075338, +), CAediting_804418(33075340, +), CAediting_804419(33075352, +), CAediting_804420(33075356, +), CAediting_804421(33075363, +), CAediting_804422(33075366, +), CAediting_804423(33075376, +), CAediting_804424(33075377, +), CAediting_804425(33075385, +), CAediting_804426(33075391, +), CAediting_804427(33075396, +), CAediting_804428(33075408, +), CAediting_804429(33075420, +), CAediting_804430(33075433, +), CAediting_804431(33075452, +), CAediting_804432(33075470, +), CAediting_804433(33075484, +), CAediting_804434(33075486, +), CAediting_804435(33075493, +), CAediting_804436(33075502, +), CAediting_804437(33076788, +), CAediting_804438(33076984, +), CAediting_804439(33076986, +), CAediting_804440(33076995, +),

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RNA editing positional annotations for TCP11L1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_804295chr11_33041636_+ncRNA_intronic
CAediting_804296chr11_33041659_+ncRNA_intronic
CAediting_804297chr11_33041660_+ncRNA_intronic
CAediting_804298chr11_33041671_+ncRNA_intronic
CAediting_804299chr11_33041672_+ncRNA_intronic
CAediting_804300chr11_33042205_+ncRNA_intronic
CAediting_804301chr11_33042260_+ncRNA_intronic
CAediting_804302chr11_33042270_+ncRNA_intronic
CAediting_804303chr11_33042272_+ncRNA_intronic
CAediting_804304chr11_33042337_+ncRNA_intronic
CAediting_804305chr11_33042856_+ncRNA_intronic
CAediting_804306chr11_33042865_+ncRNA_intronic
CAediting_804307chr11_33042866_+ncRNA_intronic
CAediting_804308chr11_33042879_+ncRNA_intronic
CAediting_804309chr11_33042880_+ncRNA_intronic
CAediting_804310chr11_33042889_+ncRNA_intronic
CAediting_804311chr11_33042943_+ncRNA_intronic
CAediting_804312chr11_33042945_+ncRNA_intronic
CAediting_804313chr11_33042946_+ncRNA_intronic
CAediting_804314chr11_33043001_+ncRNA_intronic
CAediting_804315chr11_33043010_+ncRNA_intronic
CAediting_804316chr11_33043011_+ncRNA_intronic
CAediting_804317chr11_33043012_+ncRNA_intronic
CAediting_804318chr11_33043016_+ncRNA_intronic
CAediting_804319chr11_33043055_+ncRNA_intronic
CAediting_804320chr11_33043088_+ncRNA_intronic
CAediting_804321chr11_33045077_+ncRNA_intronic
CAediting_804322chr11_33045153_+ncRNA_intronic
CAediting_804323chr11_33047115_+ncRNA_intronic
CAediting_804324chr11_33047120_+ncRNA_intronic
CAediting_804325chr11_33049121_+ncRNA_intronic
CAediting_804326chr11_33049156_+ncRNA_intronic
CAediting_804327chr11_33052847_+ncRNA_intronic
CAediting_804328chr11_33052850_+ncRNA_intronic
CAediting_804329chr11_33052872_+ncRNA_intronic
CAediting_804330chr11_33052913_+ncRNA_intronic
CAediting_804331chr11_33053262_+ncRNA_intronic
CAediting_804332chr11_33069706_+intronic
CAediting_804333chr11_33069709_+intronic
CAediting_804334chr11_33070135_+intronic
CAediting_804335chr11_33070144_+intronic
CAediting_804336chr11_33070170_+intronic
CAediting_804337chr11_33070183_+intronic
CAediting_804338chr11_33070187_+intronic
CAediting_804339chr11_33070196_+intronic
CAediting_804340chr11_33070226_+intronic
CAediting_804341chr11_33070268_+intronic
CAediting_804342chr11_33070587_+intronic
CAediting_804343chr11_33070591_+intronic
CAediting_804344chr11_33070596_+intronic
CAediting_804345chr11_33070881_+intronic
CAediting_804346chr11_33070882_+intronic
CAediting_804347chr11_33070908_+intronic
CAediting_804348chr11_33070927_+intronic
CAediting_804349chr11_33073863_+intronic
CAediting_804350chr11_33073924_+intronic
CAediting_804351chr11_33074657_+intronic
CAediting_804352chr11_33074674_+intronic
CAediting_804353chr11_33074675_+intronic
CAediting_804354chr11_33074680_+intronic
CAediting_804355chr11_33074696_+intronic
CAediting_804356chr11_33074701_+intronic
CAediting_804357chr11_33074715_+intronic
CAediting_804358chr11_33074716_+intronic
CAediting_804359chr11_33074720_+intronic
CAediting_804360chr11_33074728_+intronic
CAediting_804361chr11_33074729_+intronic
CAediting_804362chr11_33074739_+intronic
CAediting_804363chr11_33074744_+intronic
CAediting_804364chr11_33074746_+intronic
CAediting_804365chr11_33074748_+intronic
CAediting_804366chr11_33074752_+intronic
CAediting_804367chr11_33074765_+intronic
CAediting_804368chr11_33074767_+intronic
CAediting_804369chr11_33074768_+intronic
CAediting_804370chr11_33074769_+intronic
CAediting_804371chr11_33074770_+intronic
CAediting_804372chr11_33074774_+intronic
CAediting_804373chr11_33074776_+intronic
CAediting_804374chr11_33074780_+intronic
CAediting_804375chr11_33074781_+intronic
CAediting_804376chr11_33074782_+intronic
CAediting_804377chr11_33074783_+intronic
CAediting_804378chr11_33074786_+intronic
CAediting_804379chr11_33074802_+intronic
CAediting_804380chr11_33074804_+intronic
CAediting_804381chr11_33074806_+intronic
CAediting_804382chr11_33074818_+intronic
CAediting_804383chr11_33074825_+intronic
CAediting_804384chr11_33074836_+intronic
CAediting_804385chr11_33074840_+intronic
CAediting_804386chr11_33074841_+intronic
CAediting_804387chr11_33074842_+intronic
CAediting_804388chr11_33074843_+intronic
CAediting_804389chr11_33074849_+intronic
CAediting_804390chr11_33074859_+intronic
CAediting_804391chr11_33074862_+intronic
CAediting_804392chr11_33074875_+intronic
CAediting_804393chr11_33074880_+intronic
CAediting_804394chr11_33074883_+intronic
CAediting_804395chr11_33074886_+intronic
CAediting_804396chr11_33074889_+intronic
CAediting_804397chr11_33074894_+intronic
CAediting_804398chr11_33074904_+intronic
CAediting_804399chr11_33074949_+intronic
CAediting_804400chr11_33075096_+intronic
CAediting_804401chr11_33075138_+intronic
CAediting_804402chr11_33075221_+intronic
CAediting_804403chr11_33075229_+intronic
CAediting_804404chr11_33075230_+intronic
CAediting_804405chr11_33075236_+intronic
CAediting_804406chr11_33075250_+intronic
CAediting_804407chr11_33075254_+intronic
CAediting_804408chr11_33075261_+intronic
CAediting_804409chr11_33075275_+intronic
CAediting_804410chr11_33075285_+intronic
CAediting_804411chr11_33075290_+intronic
CAediting_804412chr11_33075291_+intronic
CAediting_804413chr11_33075310_+intronic
CAediting_804414chr11_33075311_+intronic
CAediting_804415chr11_33075315_+intronic
CAediting_804416chr11_33075328_+intronic
CAediting_804417chr11_33075338_+intronic
CAediting_804418chr11_33075340_+intronic
CAediting_804419chr11_33075352_+intronic
CAediting_804420chr11_33075356_+intronic
CAediting_804421chr11_33075363_+intronic
CAediting_804422chr11_33075366_+intronic
CAediting_804423chr11_33075376_+intronic
CAediting_804424chr11_33075377_+intronic
CAediting_804425chr11_33075385_+intronic
CAediting_804426chr11_33075391_+intronic
CAediting_804427chr11_33075396_+intronic
CAediting_804428chr11_33075408_+intronic
CAediting_804429chr11_33075420_+intronic
CAediting_804430chr11_33075433_+intronic
CAediting_804431chr11_33075452_+intronic
CAediting_804432chr11_33075470_+intronic
CAediting_804433chr11_33075484_+intronic
CAediting_804434chr11_33075486_+intronic
CAediting_804435chr11_33075493_+intronic
CAediting_804436chr11_33075502_+intronic
CAediting_804437chr11_33076788_+ncRNA_exonic
CAediting_804438chr11_33076984_+ncRNA_exonic
CAediting_804439chr11_33076986_+ncRNA_exonic
CAediting_804440chr11_33076995_+ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_804295chr11_33041636_+SINEAluAluSx1
CAediting_804296chr11_33041659_+SINEAluAluSx1
CAediting_804297chr11_33041660_+SINEAluAluSx1
CAediting_804298chr11_33041671_+SINEAluAluSx1
CAediting_804299chr11_33041672_+SINEAluAluSx1
CAediting_804300chr11_33042205_+SINEAluAluY
CAediting_804301chr11_33042260_+SINEAluAluY
CAediting_804302chr11_33042270_+SINEAluAluY
CAediting_804303chr11_33042272_+SINEAluAluY
CAediting_804304chr11_33042337_+SINEAluAluY
CAediting_804305chr11_33042856_+SINEAluAluSq4
CAediting_804306chr11_33042865_+SINEAluAluSq4
CAediting_804307chr11_33042866_+SINEAluAluSq4
CAediting_804308chr11_33042879_+SINEAluAluSq4
CAediting_804309chr11_33042880_+SINEAluAluSq4
CAediting_804310chr11_33042889_+SINEAluAluSq4
CAediting_804311chr11_33042943_+SINEAluAluSq4
CAediting_804312chr11_33042945_+SINEAluAluSq4
CAediting_804313chr11_33042946_+SINEAluAluSq4
CAediting_804314chr11_33043001_+SINEAluAluSq4
CAediting_804315chr11_33043010_+SINEAluAluSq4
CAediting_804316chr11_33043011_+SINEAluAluSq4
CAediting_804317chr11_33043012_+SINEAluAluSq4
CAediting_804318chr11_33043016_+SINEAluAluSq4
CAediting_804319chr11_33043055_+SINEAluAluSq4
CAediting_804320chr11_33043088_+SINEAluAluSq2
CAediting_804321chr11_33045077_+SINEAluAluJb
CAediting_804322chr11_33045153_+SINEAluAluJb
CAediting_804323chr11_33047115_+SINEAluAluSq2
CAediting_804324chr11_33047120_+SINEAluAluSq2
CAediting_804325chr11_33049121_+SINEAluAluSc
CAediting_804326chr11_33049156_+SINEAluAluSc
CAediting_804327chr11_33052847_+SINEAluAluJb
CAediting_804328chr11_33052850_+SINEAluAluJb
CAediting_804329chr11_33052872_+SINEAluAluJb
CAediting_804330chr11_33052913_+SINEAluAluJb
CAediting_804331chr11_33053262_+SINEAluAluSx
CAediting_804332chr11_33069706_+SINEAluAluJb
CAediting_804333chr11_33069709_+SINEAluAluJb
CAediting_804334chr11_33070135_+SINEAluAluJo
CAediting_804335chr11_33070144_+SINEAluAluJo
CAediting_804336chr11_33070170_+SINEAluAluJo
CAediting_804337chr11_33070183_+SINEAluAluJo
CAediting_804338chr11_33070187_+SINEAluAluJo
CAediting_804339chr11_33070196_+SINEAluAluJo
CAediting_804340chr11_33070226_+SINEAluAluJo
CAediting_804341chr11_33070268_+SINEAluAluJo
CAediting_804342chr11_33070587_+SINEAluAluSp
CAediting_804343chr11_33070591_+SINEAluAluSp
CAediting_804344chr11_33070596_+SINEAluAluSp
CAediting_804345chr11_33070881_+SINEAluAluSx
CAediting_804346chr11_33070882_+SINEAluAluSx
CAediting_804347chr11_33070908_+SINEAluAluSx
CAediting_804348chr11_33070927_+SINEAluAluSx
CAediting_804351chr11_33074657_+SINEAluAluJo
CAediting_804352chr11_33074674_+SINEAluAluJo
CAediting_804353chr11_33074675_+SINEAluAluJo
CAediting_804354chr11_33074680_+SINEAluAluJo
CAediting_804355chr11_33074696_+SINEAluAluJo
CAediting_804356chr11_33074701_+SINEAluAluJo
CAediting_804357chr11_33074715_+SINEAluAluJo
CAediting_804358chr11_33074716_+SINEAluAluJo
CAediting_804359chr11_33074720_+SINEAluAluJo
CAediting_804360chr11_33074728_+SINEAluAluJo
CAediting_804361chr11_33074729_+SINEAluAluJo
CAediting_804362chr11_33074739_+SINEAluAluJo
CAediting_804363chr11_33074744_+SINEAluAluJo
CAediting_804364chr11_33074746_+SINEAluAluJo
CAediting_804365chr11_33074748_+SINEAluAluJo
CAediting_804366chr11_33074752_+SINEAluAluJo
CAediting_804367chr11_33074765_+SINEAluAluJo
CAediting_804368chr11_33074767_+SINEAluAluJo
CAediting_804369chr11_33074768_+SINEAluAluJo
CAediting_804370chr11_33074769_+SINEAluAluJo
CAediting_804371chr11_33074770_+SINEAluAluJo
CAediting_804372chr11_33074774_+SINEAluAluJo
CAediting_804373chr11_33074776_+SINEAluAluJo
CAediting_804374chr11_33074780_+SINEAluAluJo
CAediting_804375chr11_33074781_+SINEAluAluJo
CAediting_804376chr11_33074782_+SINEAluAluJo
CAediting_804377chr11_33074783_+SINEAluAluJo
CAediting_804378chr11_33074786_+SINEAluAluJo
CAediting_804379chr11_33074802_+SINEAluAluJo
CAediting_804380chr11_33074804_+SINEAluAluJo
CAediting_804381chr11_33074806_+SINEAluAluJo
CAediting_804382chr11_33074818_+SINEAluAluJo
CAediting_804383chr11_33074825_+SINEAluAluJo
CAediting_804384chr11_33074836_+SINEAluAluJo
CAediting_804385chr11_33074840_+SINEAluAluJo
CAediting_804386chr11_33074841_+SINEAluAluJo
CAediting_804387chr11_33074842_+SINEAluAluJo
CAediting_804388chr11_33074843_+SINEAluAluJo
CAediting_804389chr11_33074849_+SINEAluAluJo
CAediting_804390chr11_33074859_+SINEAluAluJo
CAediting_804391chr11_33074862_+SINEAluAluJo
CAediting_804392chr11_33074875_+SINEAluAluJo
CAediting_804393chr11_33074880_+SINEAluAluJo
CAediting_804394chr11_33074883_+SINEAluAluJo
CAediting_804395chr11_33074886_+SINEAluAluJo
CAediting_804396chr11_33074889_+SINEAluAluJo
CAediting_804397chr11_33074894_+SINEAluAluJo
CAediting_804398chr11_33074904_+SINEAluAluJo
CAediting_804399chr11_33074949_+SINEAluAluJo
CAediting_804400chr11_33075096_+Simple_repeatSimple_repeat(TTTA)n
CAediting_804402chr11_33075221_+SINEAluAluSg
CAediting_804403chr11_33075229_+SINEAluAluSg
CAediting_804404chr11_33075230_+SINEAluAluSg
CAediting_804405chr11_33075236_+SINEAluAluSg
CAediting_804406chr11_33075250_+SINEAluAluSg
CAediting_804407chr11_33075254_+SINEAluAluSg
CAediting_804408chr11_33075261_+SINEAluAluSg
CAediting_804409chr11_33075275_+SINEAluAluSg
CAediting_804410chr11_33075285_+SINEAluAluSg
CAediting_804411chr11_33075290_+SINEAluAluSg
CAediting_804412chr11_33075291_+SINEAluAluSg
CAediting_804413chr11_33075310_+SINEAluAluSg
CAediting_804414chr11_33075311_+SINEAluAluSg
CAediting_804415chr11_33075315_+SINEAluAluSg
CAediting_804416chr11_33075328_+SINEAluAluSg
CAediting_804417chr11_33075338_+SINEAluAluSg
CAediting_804418chr11_33075340_+SINEAluAluSg
CAediting_804419chr11_33075352_+SINEAluAluSg
CAediting_804420chr11_33075356_+SINEAluAluSg
CAediting_804421chr11_33075363_+SINEAluAluSg
CAediting_804422chr11_33075366_+SINEAluAluSg
CAediting_804423chr11_33075376_+SINEAluAluSg
CAediting_804424chr11_33075377_+SINEAluAluSg
CAediting_804425chr11_33075385_+SINEAluAluSg
CAediting_804426chr11_33075391_+SINEAluAluSg
CAediting_804427chr11_33075396_+SINEAluAluSg
CAediting_804428chr11_33075408_+SINEAluAluSg
CAediting_804429chr11_33075420_+SINEAluAluSg
CAediting_804430chr11_33075433_+SINEAluAluSg
CAediting_804431chr11_33075452_+SINEAluAluSg
CAediting_804432chr11_33075470_+SINEAluAluSg
CAediting_804433chr11_33075484_+SINEAluAluSg
CAediting_804434chr11_33075486_+SINEAluAluSg
CAediting_804435chr11_33075493_+SINEAluAluSg
CAediting_804436chr11_33075502_+SINEAluAluSg
CAediting_804437chr11_33076788_+SINEAluAluY
CAediting_804438chr11_33076984_+SINEAluAluY
CAediting_804439chr11_33076986_+SINEAluAluY
CAediting_804440chr11_33076995_+SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for TCP11L1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000176148.14.TCP11L1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000176148.14.TCP11L1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TCP11L1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
STAD.CAediting_804362.ENSG00000176148.TCP11L1.png
Soverview
STAD.CAediting_804365.ENSG00000176148.TCP11L1.png
Soverview
STAD.CAediting_804412.ENSG00000176148.TCP11L1.png
Soverview

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Protein coding region RNA A-to-I editings for TCP11L1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TCP11L1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000176148.14ENST00000432887hsa-miR-605-3p33073080330730867mer-m83307306633073087148-16.75
CAediting_86358chr1_109598906_+ENSG00000176148.14ENST00000527661hsa-miR-197-5p33105906331059138mer-1a3310589033105913144-17.02
CAediting_1399425chr20_1392958_-ENSG00000176148.14ENST00000527661hsa-miR-6869-5p33105770331057778mer-1a3310575533105777143-17.48
CAediting_228905chr2_188297554_+ENSG00000176148.14ENST00000527661hsa-miR-561-3p33105637331056437mer-m83310562333105644146-12.24
CAediting_1229414chr17_67471546_+ENSG00000176148.14ENST00000528107hsa-miR-548aa33072620330726267mer-m83307260233072627143-13.28
CAediting_86358chr1_109598906_+ENSG00000176148.14ENST00000528962hsa-miR-197-5p33105906331059138mer-1a3310589033105913144-17.02
CAediting_1399425chr20_1392958_-ENSG00000176148.14ENST00000528962hsa-miR-6869-5p33105770331057778mer-1a3310575533105777143-17.48
CAediting_1524209chrX_134546392_-ENSG00000176148.14ENST00000528107hsa-miR-503-5p33057935330579406mer3305792033057941143-19.42

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000176148.14ENST00000432887hsa-miR-200b-3p33072697330727048mer-1a3307268233072704148-15.25

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TCP11L1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TCP11L1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_804352chr11_33074674_+0.01187254382218390.216781501324837....
BRCACAediting_804352chr11_33074674_+9.64354264019626e-060.334987937329206....
STADCAediting_804352chr11_33074674_+0.02412017314522010.226578366474371....
ESCACAediting_804352chr11_33074674_+0.001067602342800970.418824743489112....
BLCACAediting_804360chr11_33074728_+0.02081064199992440.302926986497412....
LGGCAediting_804360chr11_33074728_+8.39363819395111e-050.207773872532926....
BRCACAediting_804360chr11_33074728_+8.61753267176491e-150.377494623511592....
CESCCAediting_804360chr11_33074728_+0.009826804767645370.318049806458277....
LUADCAediting_804360chr11_33074728_+5.28164547015781e-050.349432795952705....
LUSCCAediting_804360chr11_33074728_+0.0009627713510131510.2799753498182987.51283276923126e-050.332857300152689..
ESCACAediting_804360chr11_33074728_+0.001792238151900190.272368739293611....
OVCAediting_804360chr11_33074728_+0.01941804096181720.314360120950845....
PCPGCAediting_804360chr11_33074728_+0.0001795827696683110.3483085720882460.0430697726319340.192397811393689..
SKCMCAediting_804360chr11_33074728_+0.003386698133098050.268785433836777....
SARCCAediting_804360chr11_33074728_+0.001289140061447750.358030277161382....
LGGCAediting_804362chr11_33074739_+..0.02067234103538470.122433722230944..
BRCACAediting_804362chr11_33074739_+0.0395014137858780.13110531171224....
LUADCAediting_804362chr11_33074739_+0.03720551413475310.233388340273369....
HNSCCAediting_804362chr11_33074739_+....0.03108904607556390.183631754510823
STADCAediting_804362chr11_33074739_+..0.003961478017012970.190529761548369..
ESCACAediting_804362chr11_33074739_+0.006479869698483680.234100235659815....
OVCAediting_804362chr11_33074739_+0.01614421136372110.271627982177408....
PCPGCAediting_804362chr11_33074739_+0.0003166441299176660.349570214269265....
SARCCAediting_804362chr11_33074739_+..0.02756128570979940.284544477998789..
LGGCAediting_804365chr11_33074748_+..0.0004953622593885660.1890156238990110.002514319816452610.164332817435525
BRCACAediting_804365chr11_33074748_+0.001803625683207660.211653924018416..0.04809785126412320.134965780172889
LUSCCAediting_804365chr11_33074748_+0.02874310876957550.243119379342224....
HNSCCAediting_804365chr11_33074748_+0.02651528496822810.204252989992906....
STADCAediting_804365chr11_33074748_+..0.002501600254287150.197165590697708..
KIRCCAediting_804365chr11_33074748_+0.01728274726305130.138291347086921....
ESCACAediting_804365chr11_33074748_+..0.02618912075910390.189964911881378..
OVCAediting_804365chr11_33074748_+0.03474860995638570.227993313318333....
PCPGCAediting_804365chr11_33074748_+0.0002770425540295460.3649133495568940.000795059125465750.338430679456998..
SARCCAediting_804365chr11_33074748_+..0.02526561869728260.307172170872023..
BRCACAediting_804378chr11_33074786_+0.01690639116887540.252654670172769....
BRCACAediting_804379chr11_33074802_+0.007963495419117170.25293907105705....
BRCACAediting_804389chr11_33074849_+0.01121720283861680.155562460576839....
LUSCCAediting_804389chr11_33074849_+0.0001199777933019240.348127267203532....
HNSCCAediting_804389chr11_33074849_+0.01816478949042720.192677169593885....
ESCACAediting_804389chr11_33074849_+0.01385882790372950.22992174182018....
LUSCCAediting_804390chr11_33074859_+0.01811821884856410.193397618152284....
HNSCCAediting_804390chr11_33074859_+0.03339967697061080.15242393892947....
STADCAediting_804390chr11_33074859_+..0.01750039113701660.162293822788439..
ESCACAediting_804390chr11_33074859_+..0.0163082873605280.209531748743916..
SKCMCAediting_804390chr11_33074859_+0.04643293865789250.151191158070328....
LGGCAediting_804412chr11_33075291_+..7.86965783794268e-120.497576752800716..
BRCACAediting_804412chr11_33075291_+..0.00628892747547940.357767737457621..
STADCAediting_804412chr11_33075291_+..1.18990178356312e-060.549911299129808..
ESCACAediting_804412chr11_33075291_+..7.31580695328768e-060.573034032804025..
PCPGCAediting_804412chr11_33075291_+..0.0314245682978510.252100513394267..
STADCAediting_804414chr11_33075311_+0.004774836285818930.284264117864095....
LGGCAediting_804426chr11_33075391_+0.02229464435240650.230687994793304....
BRCACAediting_804426chr11_33075391_+0.001158163083676060.438186032839482....
BRCACAediting_804433chr11_33075484_+6.8535950217673e-070.348421804107063....
HNSCCAediting_804433chr11_33075484_+0.007664882856666040.221372570033022....
PCPGCAediting_804433chr11_33075484_+0.0009970783161265470.318159303165164....
SKCMCAediting_804433chr11_33075484_+0.04860287433573380.195781811716421....
SARCCAediting_804433chr11_33075484_+2.87162398356236e-080.685425555051563....

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Relation with cancer stages for TCP11L1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
HNSCclinical_stageCAediting_804360chr11_33074728_+0.04407011132440450.164101227960089
HNSCclinical_stageCAediting_804389chr11_33074849_+0.04847553782989840.162492208164748
HNSCpathologic_stageCAediting_804360chr11_33074728_+0.003843292928300730.24904823551902
HNSCpathologic_stageCAediting_804362chr11_33074739_+0.02450199980933250.208783730978403
HNSCpathologic_stageCAediting_804389chr11_33074849_+0.01622453541674190.207339485167203
KIRCpathologic_stageCAediting_804360chr11_33074728_+0.003202593281905470.159652833931582
KIRCpathologic_stageCAediting_804390chr11_33074859_+0.04992105908549360.104439216134481
KIRCpathologic_stageCAediting_804394chr11_33074883_+0.006280759816855970.231562978778146
KIRCpathologic_stageCAediting_804426chr11_33075391_+0.01593163663758240.227328480570235
KIRPpathologic_stageCAediting_804360chr11_33074728_+0.01078724240279110.364827479530011
LUADpathologic_stageCAediting_804390chr11_33074859_+0.03450842140012460.217179101410392

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Relation with survival for TCP11L1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
BRCACAediting_804390chr11_33074859_+0.003913635476561870.00084560588.0892
KIRCCAediting_804379chr11_33074802_+0.03018591678199190.00762376927.995
KIRCCAediting_804434chr11_33075486_+0.04160698890068770.03018080.0006412

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RelatedDrugs for TCP11L1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TCP11L1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource