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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: KLHDC8A (CAeditome ID:55220) |
Gene summary for KLHDC8A |
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Gene information | Gene symbol | KLHDC8A | Gene ID | 55220 |
Gene name | kelch domain containing 8A | |
Synonyms | - | |
Cytomap | 1q32.1 | |
Type of gene | protein-coding | |
Description | kelch domain-containing protein 8AS-delta-E1substitute for delta-EGFR expression 1 | |
Modification date | 20210518 | |
UniProtAcc | Q8IYD2 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for KLHDC8A |
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CAediting_134574(205341650, -), CAediting_134575(205345950, -), CAediting_134576(205345962, -), CAediting_134577(205345991, -), CAediting_134578(205346027, -), CAediting_134579(205347455, -), CAediting_134580(205347522, -), CAediting_134581(205347562, -), CAediting_134582(205347709, -), CAediting_134583(205347715, -), CAediting_134584(205347717, -), CAediting_134585(205347991, -), CAediting_134586(205347992, -), CAediting_134587(205347996, -), CAediting_134588(205348005, -), CAediting_134589(205348018, -), CAediting_134590(205351843, -), CAediting_134591(205353541, -), CAediting_134592(205353654, -), CAediting_134593(205353658, -), CAediting_134594(205353662, -), CAediting_134595(205353668, -), CAediting_134596(205353670, -), |
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RNA editing positional annotations for KLHDC8A using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_134574 | chr1_205341650_- | intronic |
CAediting_134575 | chr1_205345950_- | ncRNA_intronic |
CAediting_134576 | chr1_205345962_- | ncRNA_intronic |
CAediting_134577 | chr1_205345991_- | ncRNA_intronic |
CAediting_134578 | chr1_205346027_- | ncRNA_intronic |
CAediting_134579 | chr1_205347455_- | ncRNA_intronic |
CAediting_134580 | chr1_205347522_- | ncRNA_intronic |
CAediting_134581 | chr1_205347562_- | ncRNA_intronic |
CAediting_134582 | chr1_205347709_- | ncRNA_intronic |
CAediting_134583 | chr1_205347715_- | ncRNA_intronic |
CAediting_134584 | chr1_205347717_- | ncRNA_intronic |
CAediting_134585 | chr1_205347991_- | ncRNA_intronic |
CAediting_134586 | chr1_205347992_- | ncRNA_intronic |
CAediting_134587 | chr1_205347996_- | ncRNA_intronic |
CAediting_134588 | chr1_205348005_- | ncRNA_intronic |
CAediting_134589 | chr1_205348018_- | ncRNA_intronic |
CAediting_134590 | chr1_205351843_- | ncRNA_intronic |
CAediting_134591 | chr1_205353541_- | ncRNA_intronic |
CAediting_134592 | chr1_205353654_- | ncRNA_intronic |
CAediting_134593 | chr1_205353658_- | ncRNA_intronic |
CAediting_134594 | chr1_205353662_- | ncRNA_intronic |
CAediting_134595 | chr1_205353668_- | ncRNA_intronic |
CAediting_134596 | chr1_205353670_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_134574 | chr1_205341650_- | SINE | Alu | AluY |
CAediting_134575 | chr1_205345950_- | SINE | Alu | AluSx |
CAediting_134576 | chr1_205345962_- | SINE | Alu | AluSx |
CAediting_134577 | chr1_205345991_- | SINE | Alu | AluSx |
CAediting_134578 | chr1_205346027_- | SINE | Alu | AluSx |
CAediting_134579 | chr1_205347455_- | SINE | Alu | AluJb |
CAediting_134580 | chr1_205347522_- | SINE | Alu | AluJb |
CAediting_134581 | chr1_205347562_- | SINE | Alu | AluJb |
CAediting_134582 | chr1_205347709_- | SINE | Alu | AluJb |
CAediting_134583 | chr1_205347715_- | SINE | Alu | AluJb |
CAediting_134584 | chr1_205347717_- | SINE | Alu | AluJb |
CAediting_134585 | chr1_205347991_- | SINE | Alu | FLAM_C |
CAediting_134586 | chr1_205347992_- | SINE | Alu | FLAM_C |
CAediting_134587 | chr1_205347996_- | SINE | Alu | FLAM_C |
CAediting_134588 | chr1_205348005_- | SINE | Alu | FLAM_C |
CAediting_134589 | chr1_205348018_- | SINE | Alu | FLAM_C |
CAediting_134590 | chr1_205351843_- | SINE | Alu | AluSp |
CAediting_134591 | chr1_205353541_- | SINE | Alu | AluJb |
CAediting_134592 | chr1_205353654_- | SINE | Alu | AluJb |
CAediting_134593 | chr1_205353658_- | SINE | Alu | AluJb |
CAediting_134594 | chr1_205353662_- | SINE | Alu | AluJb |
CAediting_134595 | chr1_205353668_- | SINE | Alu | AluJb |
CAediting_134596 | chr1_205353670_- | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for KLHDC8A |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for KLHDC8A |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for KLHDC8A |
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The effects of the RNA editing to the miRNA binding sites for KLHDC8A |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000162873.13 | ENST00000539253 | hsa-miR-1304-3p | 205336868 | 205336875 | 8mer-1a | 205336868 | 205336891 | 142 | -16.87 |
CAediting_846604 | chr11_93733708_- | ENSG00000162873.13 | ENST00000367156 | hsa-miR-1304-3p | 205336868 | 205336875 | 8mer-1a | 205336868 | 205336891 | 142 | -16.87 |
CAediting_1054808 | chr15_66496985_- | ENSG00000162873.13 | ENST00000539253 | hsa-miR-4512 | 205336636 | 205336642 | 7mer-m8 | 205336635 | 205336656 | 140 | -15.37 |
CAediting_1368054 | chr19_46709310_- | ENSG00000162873.13 | ENST00000539253 | hsa-miR-320e | 205337010 | 205337016 | 7mer-m8 | 205337009 | 205337026 | 155 | -22.11 |
CAediting_1054808 | chr15_66496985_- | ENSG00000162873.13 | ENST00000367156 | hsa-miR-4512 | 205336636 | 205336642 | 7mer-m8 | 205336635 | 205336656 | 140 | -15.37 |
CAediting_1368054 | chr19_46709310_- | ENSG00000162873.13 | ENST00000367156 | hsa-miR-320e | 205337010 | 205337016 | 7mer-m8 | 205337009 | 205337026 | 155 | -22.11 |
CAediting_468389 | chr6_31355314_- | ENSG00000162873.13 | ENST00000539253 | hsa-miR-6891-5p | 205336157 | 205336163 | 7mer-m8 | 205336156 | 205336174 | 145 | -15.57 |
CAediting_468389 | chr6_31355314_- | ENSG00000162873.13 | ENST00000367156 | hsa-miR-6891-5p | 205336157 | 205336163 | 7mer-m8 | 205336156 | 205336174 | 145 | -15.57 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_86358 | chr1_109598906_+ | ENSG00000162873.13 | ENST00000539253 | hsa-miR-197-5p | 205336891 | 205336896 | 6mer | 205336874 | 205336897 | 144 | -27.83 |
CAediting_86358 | chr1_109598906_+ | ENSG00000162873.13 | ENST00000367156 | hsa-miR-197-5p | 205336891 | 205336896 | 6mer | 205336874 | 205336897 | 144 | -27.83 |
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The effects of the RNA editing to the stability of the RNA structures for KLHDC8A |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for KLHDC8A |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LGG | CAediting_134584 | chr1_205347717_- | 0.0464736194345422 | 0.251834806582101 | . | . | . | . |
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Relation with cancer stages for KLHDC8A |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for KLHDC8A |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for KLHDC8A |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KLHDC8A |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |