|
Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples | |
The effects of the RNA editing to the stability of the RNA structures | |
Editing gene: RPRD1A (CAeditome ID:55197) |
Gene summary for RPRD1A |
Gene summary |
Gene information | Gene symbol | RPRD1A | Gene ID | 55197 |
Gene name | regulation of nuclear pre-mRNA domain containing 1A | |
Synonyms | HsT3101|P15RS | |
Cytomap | 18q12.2 | |
Type of gene | protein-coding | |
Description | regulation of nuclear pre-mRNA domain-containing protein 1ACDKN2B-related proteinCyclin-dependent kinase inhibitor 2B-related protein (p15INK4B-related protein)cyclin-dependent kinase 2B-inhibitor-related proteinp15INK4B-related protein | |
Modification date | 20210518 | |
UniProtAcc | Q96P16 | |
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
RPRD1A | GO:0016591 | Regulation of nuclear pre-mRNA domain-containing protein 1A | 22231121 |
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RNA A-to-I events for RPRD1A |
RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure. |
RNA editing frequencies across 33 cancers of gene: ENSG00000141425.16 |
RNA A-to-I editing events in Cancer. |
CAediting_1261064(35995299, -), CAediting_1261065(35995327, -), CAediting_1261066(35995331, -), CAediting_1261067(35995348, -), CAediting_1261068(35995356, -), CAediting_1261069(35995360, -), CAediting_1261070(35995369, -), CAediting_1261071(35995375, -), CAediting_1261072(35995388, -), CAediting_1261073(35995398, -), CAediting_1261074(35995403, -), CAediting_1261075(35995404, -), CAediting_1261076(35995412, -), CAediting_1261077(35995416, -), CAediting_1261078(35995469, -), CAediting_1261079(35995500, -), CAediting_1261080(35996774, -), CAediting_1261081(35996792, -), CAediting_1261082(36002485, -), CAediting_1261083(36003861, -), CAediting_1261084(36003891, -), CAediting_1261085(36003896, -), CAediting_1261086(36003914, -), CAediting_1261087(36003915, -), CAediting_1261088(36003922, -), CAediting_1261089(36003937, -), CAediting_1261090(36004047, -), CAediting_1261091(36004112, -), CAediting_1261092(36004120, -), CAediting_1261093(36004315, -), CAediting_1261094(36004328, -), CAediting_1261095(36004340, -), CAediting_1261096(36004347, -), CAediting_1261097(36004352, -), CAediting_1261098(36004363, -), CAediting_1261099(36004370, -), CAediting_1261100(36004393, -), CAediting_1261101(36004419, -), CAediting_1261102(36004434, -), CAediting_1261103(36004437, -), CAediting_1261104(36004454, -), CAediting_1261105(36004471, -), CAediting_1261106(36004472, -), CAediting_1261107(36004479, -), CAediting_1261108(36004487, -), CAediting_1261109(36004510, -), CAediting_1261110(36004511, -), CAediting_1261111(36004522, -), CAediting_1261112(36004778, -), CAediting_1261113(36004781, -), CAediting_1261114(36004803, -), CAediting_1261115(36004888, -), CAediting_1261116(36004897, -), CAediting_1261117(36006276, -), CAediting_1261118(36006316, -), CAediting_1261119(36006317, -), CAediting_1261120(36006339, -), CAediting_1261121(36006420, -), CAediting_1261122(36006490, -), CAediting_1261123(36008057, -), CAediting_1261124(36008327, -), CAediting_1261125(36008360, -), CAediting_1261126(36008361, -), CAediting_1261127(36008363, -), CAediting_1261128(36008499, -), CAediting_1261129(36008500, -), CAediting_1261130(36010441, -), CAediting_1261131(36014696, -), CAediting_1261132(36014717, -), CAediting_1261133(36014739, -), CAediting_1261134(36014741, -), CAediting_1261135(36015275, -), CAediting_1261136(36015309, -), CAediting_1261137(36015351, -), CAediting_1261138(36015357, -), CAediting_1261139(36015389, -), CAediting_1261140(36015391, -), CAediting_1261141(36015392, -), CAediting_1261142(36015395, -), CAediting_1261143(36015406, -), CAediting_1261144(36015408, -), CAediting_1261145(36015426, -), CAediting_1261146(36016260, -), CAediting_1261147(36016290, -), CAediting_1261148(36016291, -), CAediting_1261149(36016312, -), CAediting_1261150(36016355, -), CAediting_1261151(36016360, -), CAediting_1261152(36016361, -), CAediting_1261153(36016387, -), CAediting_1261154(36016405, -), CAediting_1261155(36016478, -), CAediting_1261156(36017118, -), CAediting_1261157(36017138, -), CAediting_1261158(36017144, -), CAediting_1261159(36017161, -), CAediting_1261160(36017162, -), CAediting_1261161(36017181, -), CAediting_1261162(36017186, -), CAediting_1261163(36017188, -), CAediting_1261164(36017198, -), CAediting_1261165(36017218, -), CAediting_1261166(36017244, -), CAediting_1261167(36017257, -), CAediting_1261168(36017279, -), CAediting_1261169(36017294, -), CAediting_1261170(36018402, -), CAediting_1261171(36018406, -), CAediting_1261172(36018412, -), CAediting_1261173(36018438, -), CAediting_1261174(36018545, -), CAediting_1261175(36019170, -), CAediting_1261176(36019176, -), CAediting_1261177(36019180, -), CAediting_1261178(36019184, -), CAediting_1261179(36019204, -), CAediting_1261180(36019205, -), CAediting_1261181(36019219, -), CAediting_1261182(36019229, -), CAediting_1261183(36019246, -), CAediting_1261184(36019272, -), CAediting_1261185(36019275, -), CAediting_1261186(36019276, -), CAediting_1261187(36019284, -), CAediting_1261188(36019285, -), CAediting_1261189(36019287, -), CAediting_1261190(36019288, -), CAediting_1261191(36019291, -), CAediting_1261192(36019297, -), CAediting_1261193(36019302, -), CAediting_1261194(36019310, -), CAediting_1261195(36019312, -), CAediting_1261196(36019331, -), CAediting_1261197(36019371, -), CAediting_1261198(36019374, -), CAediting_1261199(36019379, -), CAediting_1261200(36019380, -), CAediting_1261201(36019388, -), CAediting_1261202(36019402, -), CAediting_1261203(36019765, -), CAediting_1261204(36019783, -), CAediting_1261205(36019788, -), CAediting_1261206(36019836, -), CAediting_1261207(36019837, -), CAediting_1261208(36019848, -), CAediting_1261209(36019857, -), CAediting_1261210(36019874, -), CAediting_1261211(36019877, -), CAediting_1261212(36019892, -), CAediting_1261213(36019902, -), CAediting_1261214(36019916, -), CAediting_1261215(36019918, -), CAediting_1261216(36019928, -), CAediting_1261217(36019954, -), CAediting_1261218(36019957, -), CAediting_1261219(36019958, -), CAediting_1261220(36019988, -), CAediting_1261221(36020018, -), CAediting_1261222(36020026, -), CAediting_1261223(36020682, -), CAediting_1261224(36020705, -), CAediting_1261225(36020708, -), CAediting_1261226(36020714, -), CAediting_1261227(36020718, -), CAediting_1261228(36020730, -), CAediting_1261229(36020762, -), CAediting_1261230(36020770, -), CAediting_1261231(36020778, -), CAediting_1261232(36020800, -), CAediting_1261233(36021742, -), CAediting_1261234(36021748, -), CAediting_1261235(36021754, -), CAediting_1261236(36021764, -), CAediting_1261237(36021807, -), CAediting_1261238(36021828, -), CAediting_1261239(36021852, -), CAediting_1261240(36021879, -), CAediting_1261241(36021889, -), CAediting_1261242(36021915, -), CAediting_1261243(36022704, -), CAediting_1261244(36022706, -), CAediting_1261245(36022718, -), CAediting_1261246(36022719, -), CAediting_1261247(36022742, -), CAediting_1261248(36022765, -), CAediting_1261249(36022791, -), CAediting_1261250(36022795, -), CAediting_1261251(36022814, -), CAediting_1261252(36022827, -), CAediting_1261253(36022850, -), CAediting_1261254(36022862, -), CAediting_1261255(36022875, -), CAediting_1261256(36022879, -), CAediting_1261257(36022882, -), CAediting_1261258(36022920, -), CAediting_1261259(36022924, -), CAediting_1261260(36022938, -), CAediting_1261261(36022954, -), CAediting_1261262(36024204, -), CAediting_1261263(36024207, -), CAediting_1261264(36024209, -), CAediting_1261265(36024236, -), CAediting_1261266(36024243, -), CAediting_1261267(36024244, -), CAediting_1261268(36024249, -), CAediting_1261269(36024258, -), CAediting_1261270(36024262, -), CAediting_1261271(36024275, -), CAediting_1261272(36024279, -), CAediting_1261273(36024285, -), CAediting_1261274(36024311, -), CAediting_1261275(36024338, -), CAediting_1261276(36024349, -), CAediting_1261277(36024357, -), CAediting_1261278(36024369, -), CAediting_1261279(36024374, -), CAediting_1261280(36024375, -), CAediting_1261281(36024383, -), CAediting_1261282(36024388, -), CAediting_1261283(36024393, -), CAediting_1261284(36024411, -), CAediting_1261285(36024420, -), CAediting_1261286(36024423, -), CAediting_1261287(36024429, -), CAediting_1261288(36024437, -), CAediting_1261289(36029970, -), CAediting_1261290(36030073, -), CAediting_1261291(36030078, -), CAediting_1261292(36030322, -), CAediting_1261293(36030355, -), CAediting_1261294(36030361, -), CAediting_1261295(36030371, -), CAediting_1261296(36046741, -), CAediting_1261297(36048163, -), CAediting_1261298(36048178, -), CAediting_1261299(36048204, -), CAediting_1261300(36050688, -), CAediting_1261301(36050800, -), CAediting_1261302(36050809, -), CAediting_1261303(36052723, -), CAediting_1261304(36052767, -), CAediting_1261305(36057160, -), CAediting_1261306(36057171, -), CAediting_1261307(36057529, -), CAediting_1261308(36059333, -), CAediting_1261309(36060250, -), |
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RNA editing positional annotations for RPRD1A using Annovar |
Protein coding RNA editing(s). |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
CAeditome ID | Position | Variant type |
CAediting_1261064 | chr18_35995299_- | intronic |
CAediting_1261065 | chr18_35995327_- | intronic |
CAediting_1261066 | chr18_35995331_- | intronic |
CAediting_1261067 | chr18_35995348_- | intronic |
CAediting_1261068 | chr18_35995356_- | intronic |
CAediting_1261069 | chr18_35995360_- | intronic |
CAediting_1261070 | chr18_35995369_- | intronic |
CAediting_1261071 | chr18_35995375_- | intronic |
CAediting_1261072 | chr18_35995388_- | intronic |
CAediting_1261073 | chr18_35995398_- | intronic |
CAediting_1261074 | chr18_35995403_- | intronic |
CAediting_1261075 | chr18_35995404_- | intronic |
CAediting_1261076 | chr18_35995412_- | intronic |
CAediting_1261077 | chr18_35995416_- | intronic |
CAediting_1261078 | chr18_35995469_- | intronic |
CAediting_1261079 | chr18_35995500_- | intronic |
CAediting_1261080 | chr18_35996774_- | intronic |
CAediting_1261081 | chr18_35996792_- | intronic |
CAediting_1261082 | chr18_36002485_- | intronic |
CAediting_1261083 | chr18_36003861_- | intronic |
CAediting_1261084 | chr18_36003891_- | intronic |
CAediting_1261085 | chr18_36003896_- | intronic |
CAediting_1261086 | chr18_36003914_- | intronic |
CAediting_1261087 | chr18_36003915_- | intronic |
CAediting_1261088 | chr18_36003922_- | intronic |
CAediting_1261089 | chr18_36003937_- | intronic |
CAediting_1261090 | chr18_36004047_- | intronic |
CAediting_1261091 | chr18_36004112_- | intronic |
CAediting_1261092 | chr18_36004120_- | intronic |
CAediting_1261093 | chr18_36004315_- | intronic |
CAediting_1261094 | chr18_36004328_- | intronic |
CAediting_1261095 | chr18_36004340_- | intronic |
CAediting_1261096 | chr18_36004347_- | intronic |
CAediting_1261097 | chr18_36004352_- | intronic |
CAediting_1261098 | chr18_36004363_- | intronic |
CAediting_1261099 | chr18_36004370_- | intronic |
CAediting_1261100 | chr18_36004393_- | intronic |
CAediting_1261101 | chr18_36004419_- | intronic |
CAediting_1261102 | chr18_36004434_- | intronic |
CAediting_1261103 | chr18_36004437_- | intronic |
CAediting_1261104 | chr18_36004454_- | intronic |
CAediting_1261105 | chr18_36004471_- | intronic |
CAediting_1261106 | chr18_36004472_- | intronic |
CAediting_1261107 | chr18_36004479_- | intronic |
CAediting_1261108 | chr18_36004487_- | intronic |
CAediting_1261109 | chr18_36004510_- | intronic |
CAediting_1261110 | chr18_36004511_- | intronic |
CAediting_1261111 | chr18_36004522_- | intronic |
CAediting_1261112 | chr18_36004778_- | intronic |
CAediting_1261113 | chr18_36004781_- | intronic |
CAediting_1261114 | chr18_36004803_- | intronic |
CAediting_1261115 | chr18_36004888_- | intronic |
CAediting_1261116 | chr18_36004897_- | intronic |
CAediting_1261117 | chr18_36006276_- | intronic |
CAediting_1261118 | chr18_36006316_- | intronic |
CAediting_1261119 | chr18_36006317_- | intronic |
CAediting_1261120 | chr18_36006339_- | intronic |
CAediting_1261121 | chr18_36006420_- | intronic |
CAediting_1261122 | chr18_36006490_- | intronic |
CAediting_1261123 | chr18_36008057_- | intronic |
CAediting_1261124 | chr18_36008327_- | intronic |
CAediting_1261125 | chr18_36008360_- | intronic |
CAediting_1261126 | chr18_36008361_- | intronic |
CAediting_1261127 | chr18_36008363_- | intronic |
CAediting_1261128 | chr18_36008499_- | intronic |
CAediting_1261129 | chr18_36008500_- | intronic |
CAediting_1261130 | chr18_36010441_- | intronic |
CAediting_1261131 | chr18_36014696_- | intronic |
CAediting_1261132 | chr18_36014717_- | intronic |
CAediting_1261133 | chr18_36014739_- | intronic |
CAediting_1261134 | chr18_36014741_- | intronic |
CAediting_1261135 | chr18_36015275_- | intronic |
CAediting_1261136 | chr18_36015309_- | intronic |
CAediting_1261137 | chr18_36015351_- | intronic |
CAediting_1261138 | chr18_36015357_- | intronic |
CAediting_1261139 | chr18_36015389_- | intronic |
CAediting_1261140 | chr18_36015391_- | intronic |
CAediting_1261141 | chr18_36015392_- | intronic |
CAediting_1261142 | chr18_36015395_- | intronic |
CAediting_1261143 | chr18_36015406_- | intronic |
CAediting_1261144 | chr18_36015408_- | intronic |
CAediting_1261145 | chr18_36015426_- | intronic |
CAediting_1261146 | chr18_36016260_- | intronic |
CAediting_1261147 | chr18_36016290_- | intronic |
CAediting_1261148 | chr18_36016291_- | intronic |
CAediting_1261149 | chr18_36016312_- | intronic |
CAediting_1261150 | chr18_36016355_- | intronic |
CAediting_1261151 | chr18_36016360_- | intronic |
CAediting_1261152 | chr18_36016361_- | intronic |
CAediting_1261153 | chr18_36016387_- | intronic |
CAediting_1261154 | chr18_36016405_- | intronic |
CAediting_1261155 | chr18_36016478_- | intronic |
CAediting_1261156 | chr18_36017118_- | intronic |
CAediting_1261157 | chr18_36017138_- | intronic |
CAediting_1261158 | chr18_36017144_- | intronic |
CAediting_1261159 | chr18_36017161_- | intronic |
CAediting_1261160 | chr18_36017162_- | intronic |
CAediting_1261161 | chr18_36017181_- | intronic |
CAediting_1261162 | chr18_36017186_- | intronic |
CAediting_1261163 | chr18_36017188_- | intronic |
CAediting_1261164 | chr18_36017198_- | intronic |
CAediting_1261165 | chr18_36017218_- | intronic |
CAediting_1261166 | chr18_36017244_- | intronic |
CAediting_1261167 | chr18_36017257_- | intronic |
CAediting_1261168 | chr18_36017279_- | intronic |
CAediting_1261169 | chr18_36017294_- | intronic |
CAediting_1261170 | chr18_36018402_- | intronic |
CAediting_1261171 | chr18_36018406_- | intronic |
CAediting_1261172 | chr18_36018412_- | intronic |
CAediting_1261173 | chr18_36018438_- | intronic |
CAediting_1261174 | chr18_36018545_- | intronic |
CAediting_1261175 | chr18_36019170_- | intronic |
CAediting_1261176 | chr18_36019176_- | intronic |
CAediting_1261177 | chr18_36019180_- | intronic |
CAediting_1261178 | chr18_36019184_- | intronic |
CAediting_1261179 | chr18_36019204_- | intronic |
CAediting_1261180 | chr18_36019205_- | intronic |
CAediting_1261181 | chr18_36019219_- | intronic |
CAediting_1261182 | chr18_36019229_- | intronic |
CAediting_1261183 | chr18_36019246_- | intronic |
CAediting_1261184 | chr18_36019272_- | intronic |
CAediting_1261185 | chr18_36019275_- | intronic |
CAediting_1261186 | chr18_36019276_- | intronic |
CAediting_1261187 | chr18_36019284_- | intronic |
CAediting_1261188 | chr18_36019285_- | intronic |
CAediting_1261189 | chr18_36019287_- | intronic |
CAediting_1261190 | chr18_36019288_- | intronic |
CAediting_1261191 | chr18_36019291_- | intronic |
CAediting_1261192 | chr18_36019297_- | intronic |
CAediting_1261193 | chr18_36019302_- | intronic |
CAediting_1261194 | chr18_36019310_- | intronic |
CAediting_1261195 | chr18_36019312_- | intronic |
CAediting_1261196 | chr18_36019331_- | intronic |
CAediting_1261197 | chr18_36019371_- | intronic |
CAediting_1261198 | chr18_36019374_- | intronic |
CAediting_1261199 | chr18_36019379_- | intronic |
CAediting_1261200 | chr18_36019380_- | intronic |
CAediting_1261201 | chr18_36019388_- | intronic |
CAediting_1261202 | chr18_36019402_- | intronic |
CAediting_1261203 | chr18_36019765_- | intronic |
CAediting_1261204 | chr18_36019783_- | intronic |
CAediting_1261205 | chr18_36019788_- | intronic |
CAediting_1261206 | chr18_36019836_- | intronic |
CAediting_1261207 | chr18_36019837_- | intronic |
CAediting_1261208 | chr18_36019848_- | intronic |
CAediting_1261209 | chr18_36019857_- | intronic |
CAediting_1261210 | chr18_36019874_- | intronic |
CAediting_1261211 | chr18_36019877_- | intronic |
CAediting_1261212 | chr18_36019892_- | intronic |
CAediting_1261213 | chr18_36019902_- | intronic |
CAediting_1261214 | chr18_36019916_- | intronic |
CAediting_1261215 | chr18_36019918_- | intronic |
CAediting_1261216 | chr18_36019928_- | intronic |
CAediting_1261217 | chr18_36019954_- | intronic |
CAediting_1261218 | chr18_36019957_- | intronic |
CAediting_1261219 | chr18_36019958_- | intronic |
CAediting_1261220 | chr18_36019988_- | intronic |
CAediting_1261221 | chr18_36020018_- | intronic |
CAediting_1261222 | chr18_36020026_- | intronic |
CAediting_1261223 | chr18_36020682_- | intronic |
CAediting_1261224 | chr18_36020705_- | intronic |
CAediting_1261225 | chr18_36020708_- | intronic |
CAediting_1261226 | chr18_36020714_- | intronic |
CAediting_1261227 | chr18_36020718_- | intronic |
CAediting_1261228 | chr18_36020730_- | intronic |
CAediting_1261229 | chr18_36020762_- | intronic |
CAediting_1261230 | chr18_36020770_- | intronic |
CAediting_1261231 | chr18_36020778_- | intronic |
CAediting_1261232 | chr18_36020800_- | intronic |
CAediting_1261233 | chr18_36021742_- | intronic |
CAediting_1261234 | chr18_36021748_- | intronic |
CAediting_1261235 | chr18_36021754_- | intronic |
CAediting_1261236 | chr18_36021764_- | intronic |
CAediting_1261237 | chr18_36021807_- | intronic |
CAediting_1261238 | chr18_36021828_- | intronic |
CAediting_1261239 | chr18_36021852_- | intronic |
CAediting_1261240 | chr18_36021879_- | intronic |
CAediting_1261241 | chr18_36021889_- | intronic |
CAediting_1261242 | chr18_36021915_- | intronic |
CAediting_1261243 | chr18_36022704_- | intronic |
CAediting_1261244 | chr18_36022706_- | intronic |
CAediting_1261245 | chr18_36022718_- | intronic |
CAediting_1261246 | chr18_36022719_- | intronic |
CAediting_1261247 | chr18_36022742_- | intronic |
CAediting_1261248 | chr18_36022765_- | intronic |
CAediting_1261249 | chr18_36022791_- | intronic |
CAediting_1261250 | chr18_36022795_- | intronic |
CAediting_1261251 | chr18_36022814_- | intronic |
CAediting_1261252 | chr18_36022827_- | intronic |
CAediting_1261253 | chr18_36022850_- | intronic |
CAediting_1261254 | chr18_36022862_- | intronic |
CAediting_1261255 | chr18_36022875_- | intronic |
CAediting_1261256 | chr18_36022879_- | intronic |
CAediting_1261257 | chr18_36022882_- | intronic |
CAediting_1261258 | chr18_36022920_- | intronic |
CAediting_1261259 | chr18_36022924_- | intronic |
CAediting_1261260 | chr18_36022938_- | intronic |
CAediting_1261261 | chr18_36022954_- | intronic |
CAediting_1261262 | chr18_36024204_- | intronic |
CAediting_1261263 | chr18_36024207_- | intronic |
CAediting_1261264 | chr18_36024209_- | intronic |
CAediting_1261265 | chr18_36024236_- | intronic |
CAediting_1261266 | chr18_36024243_- | intronic |
CAediting_1261267 | chr18_36024244_- | intronic |
CAediting_1261268 | chr18_36024249_- | intronic |
CAediting_1261269 | chr18_36024258_- | intronic |
CAediting_1261270 | chr18_36024262_- | intronic |
CAediting_1261271 | chr18_36024275_- | intronic |
CAediting_1261272 | chr18_36024279_- | intronic |
CAediting_1261273 | chr18_36024285_- | intronic |
CAediting_1261274 | chr18_36024311_- | intronic |
CAediting_1261275 | chr18_36024338_- | intronic |
CAediting_1261276 | chr18_36024349_- | intronic |
CAediting_1261277 | chr18_36024357_- | intronic |
CAediting_1261278 | chr18_36024369_- | intronic |
CAediting_1261279 | chr18_36024374_- | intronic |
CAediting_1261280 | chr18_36024375_- | intronic |
CAediting_1261281 | chr18_36024383_- | intronic |
CAediting_1261282 | chr18_36024388_- | intronic |
CAediting_1261283 | chr18_36024393_- | intronic |
CAediting_1261284 | chr18_36024411_- | intronic |
CAediting_1261285 | chr18_36024420_- | intronic |
CAediting_1261286 | chr18_36024423_- | intronic |
CAediting_1261287 | chr18_36024429_- | intronic |
CAediting_1261288 | chr18_36024437_- | intronic |
CAediting_1261289 | chr18_36029970_- | intronic |
CAediting_1261290 | chr18_36030073_- | intronic |
CAediting_1261291 | chr18_36030078_- | intronic |
CAediting_1261292 | chr18_36030322_- | intronic |
CAediting_1261293 | chr18_36030355_- | intronic |
CAediting_1261294 | chr18_36030361_- | intronic |
CAediting_1261295 | chr18_36030371_- | intronic |
CAediting_1261296 | chr18_36046741_- | intronic |
CAediting_1261297 | chr18_36048163_- | intronic |
CAediting_1261298 | chr18_36048178_- | intronic |
CAediting_1261299 | chr18_36048204_- | intronic |
CAediting_1261300 | chr18_36050688_- | intronic |
CAediting_1261301 | chr18_36050800_- | intronic |
CAediting_1261302 | chr18_36050809_- | intronic |
CAediting_1261303 | chr18_36052723_- | intronic |
CAediting_1261304 | chr18_36052767_- | intronic |
CAediting_1261305 | chr18_36057160_- | ncRNA_intronic |
CAediting_1261306 | chr18_36057171_- | ncRNA_intronic |
CAediting_1261307 | chr18_36057529_- | ncRNA_intronic |
CAediting_1261308 | chr18_36059333_- | ncRNA_intronic |
CAediting_1261309 | chr18_36060250_- | ncRNA_intronic |
Repat-regional RNA editing(s). |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1261064 | chr18_35995299_- | SINE | Alu | AluSp |
CAediting_1261065 | chr18_35995327_- | SINE | Alu | AluSp |
CAediting_1261066 | chr18_35995331_- | SINE | Alu | AluSp |
CAediting_1261067 | chr18_35995348_- | SINE | Alu | AluSp |
CAediting_1261068 | chr18_35995356_- | SINE | Alu | AluSp |
CAediting_1261069 | chr18_35995360_- | SINE | Alu | AluSp |
CAediting_1261070 | chr18_35995369_- | SINE | Alu | AluSp |
CAediting_1261071 | chr18_35995375_- | SINE | Alu | AluSp |
CAediting_1261072 | chr18_35995388_- | SINE | Alu | AluSp |
CAediting_1261073 | chr18_35995398_- | SINE | Alu | AluSp |
CAediting_1261074 | chr18_35995403_- | SINE | Alu | AluSp |
CAediting_1261075 | chr18_35995404_- | SINE | Alu | AluSp |
CAediting_1261076 | chr18_35995412_- | SINE | Alu | AluSp |
CAediting_1261077 | chr18_35995416_- | SINE | Alu | AluSp |
CAediting_1261078 | chr18_35995469_- | SINE | Alu | AluSp |
CAediting_1261079 | chr18_35995500_- | SINE | Alu | AluSp |
CAediting_1261080 | chr18_35996774_- | SINE | Alu | AluJb |
CAediting_1261081 | chr18_35996792_- | SINE | Alu | AluJb |
CAediting_1261082 | chr18_36002485_- | SINE | Alu | AluJb |
CAediting_1261083 | chr18_36003861_- | SINE | Alu | AluJb |
CAediting_1261084 | chr18_36003891_- | SINE | Alu | AluJb |
CAediting_1261085 | chr18_36003896_- | SINE | Alu | AluJb |
CAediting_1261086 | chr18_36003914_- | SINE | Alu | AluJb |
CAediting_1261087 | chr18_36003915_- | SINE | Alu | AluJb |
CAediting_1261088 | chr18_36003922_- | SINE | Alu | AluJb |
CAediting_1261089 | chr18_36003937_- | SINE | Alu | AluJb |
CAediting_1261090 | chr18_36004047_- | SINE | Alu | AluJb |
CAediting_1261091 | chr18_36004112_- | SINE | Alu | AluJb |
CAediting_1261092 | chr18_36004120_- | SINE | Alu | AluJb |
CAediting_1261093 | chr18_36004315_- | SINE | Alu | AluJr |
CAediting_1261094 | chr18_36004328_- | SINE | Alu | AluJr |
CAediting_1261095 | chr18_36004340_- | SINE | Alu | AluJr |
CAediting_1261096 | chr18_36004347_- | SINE | Alu | AluJr |
CAediting_1261097 | chr18_36004352_- | SINE | Alu | AluJr |
CAediting_1261098 | chr18_36004363_- | SINE | Alu | AluJr |
CAediting_1261099 | chr18_36004370_- | SINE | Alu | AluJr |
CAediting_1261100 | chr18_36004393_- | SINE | Alu | AluJr |
CAediting_1261101 | chr18_36004419_- | SINE | Alu | AluJr |
CAediting_1261102 | chr18_36004434_- | SINE | Alu | AluJr |
CAediting_1261103 | chr18_36004437_- | SINE | Alu | AluJr |
CAediting_1261104 | chr18_36004454_- | SINE | Alu | AluJr |
CAediting_1261105 | chr18_36004471_- | SINE | Alu | AluJr |
CAediting_1261106 | chr18_36004472_- | SINE | Alu | AluJr |
CAediting_1261107 | chr18_36004479_- | SINE | Alu | AluJr |
CAediting_1261108 | chr18_36004487_- | SINE | Alu | AluJr |
CAediting_1261109 | chr18_36004510_- | SINE | Alu | AluJr |
CAediting_1261110 | chr18_36004511_- | SINE | Alu | AluJr |
CAediting_1261111 | chr18_36004522_- | SINE | Alu | AluJr |
CAediting_1261112 | chr18_36004778_- | SINE | Alu | AluSx |
CAediting_1261113 | chr18_36004781_- | SINE | Alu | AluSx |
CAediting_1261114 | chr18_36004803_- | SINE | Alu | AluSx |
CAediting_1261115 | chr18_36004888_- | SINE | Alu | AluSx |
CAediting_1261116 | chr18_36004897_- | SINE | Alu | AluSx |
CAediting_1261117 | chr18_36006276_- | SINE | Alu | AluJr |
CAediting_1261118 | chr18_36006316_- | SINE | Alu | AluJr |
CAediting_1261119 | chr18_36006317_- | SINE | Alu | AluJr |
CAediting_1261120 | chr18_36006339_- | SINE | Alu | AluJr |
CAediting_1261121 | chr18_36006420_- | SINE | Alu | AluJr |
CAediting_1261122 | chr18_36006490_- | SINE | Alu | AluJr |
CAediting_1261123 | chr18_36008057_- | SINE | Alu | FLAM_A |
CAediting_1261124 | chr18_36008327_- | SINE | Alu | AluJo |
CAediting_1261125 | chr18_36008360_- | SINE | Alu | AluJo |
CAediting_1261126 | chr18_36008361_- | SINE | Alu | AluJo |
CAediting_1261127 | chr18_36008363_- | SINE | Alu | AluJo |
CAediting_1261128 | chr18_36008499_- | SINE | Alu | AluJo |
CAediting_1261129 | chr18_36008500_- | SINE | Alu | AluJo |
CAediting_1261130 | chr18_36010441_- | SINE | Alu | AluJr |
CAediting_1261131 | chr18_36014696_- | SINE | Alu | AluY |
CAediting_1261132 | chr18_36014717_- | SINE | Alu | AluY |
CAediting_1261133 | chr18_36014739_- | SINE | Alu | AluY |
CAediting_1261134 | chr18_36014741_- | SINE | Alu | AluY |
CAediting_1261135 | chr18_36015275_- | SINE | Alu | AluSx1 |
CAediting_1261136 | chr18_36015309_- | SINE | Alu | AluSx1 |
CAediting_1261137 | chr18_36015351_- | SINE | Alu | AluSx1 |
CAediting_1261138 | chr18_36015357_- | SINE | Alu | AluSx1 |
CAediting_1261139 | chr18_36015389_- | SINE | Alu | AluSx1 |
CAediting_1261140 | chr18_36015391_- | SINE | Alu | AluSx1 |
CAediting_1261141 | chr18_36015392_- | SINE | Alu | AluSx1 |
CAediting_1261142 | chr18_36015395_- | SINE | Alu | AluSx1 |
CAediting_1261143 | chr18_36015406_- | SINE | Alu | AluSx1 |
CAediting_1261144 | chr18_36015408_- | SINE | Alu | AluSx1 |
CAediting_1261145 | chr18_36015426_- | SINE | Alu | AluSx1 |
CAediting_1261146 | chr18_36016260_- | SINE | Alu | AluSp |
CAediting_1261147 | chr18_36016290_- | SINE | Alu | AluSp |
CAediting_1261148 | chr18_36016291_- | SINE | Alu | AluSp |
CAediting_1261149 | chr18_36016312_- | SINE | Alu | AluSp |
CAediting_1261150 | chr18_36016355_- | SINE | Alu | AluSp |
CAediting_1261151 | chr18_36016360_- | SINE | Alu | AluSp |
CAediting_1261152 | chr18_36016361_- | SINE | Alu | AluSp |
CAediting_1261153 | chr18_36016387_- | SINE | Alu | AluSp |
CAediting_1261154 | chr18_36016405_- | SINE | Alu | AluSp |
CAediting_1261155 | chr18_36016478_- | SINE | Alu | AluSp |
CAediting_1261156 | chr18_36017118_- | SINE | Alu | AluJb |
CAediting_1261157 | chr18_36017138_- | SINE | Alu | AluJb |
CAediting_1261158 | chr18_36017144_- | SINE | Alu | AluJb |
CAediting_1261159 | chr18_36017161_- | SINE | Alu | AluJb |
CAediting_1261160 | chr18_36017162_- | SINE | Alu | AluJb |
CAediting_1261161 | chr18_36017181_- | SINE | Alu | AluJb |
CAediting_1261162 | chr18_36017186_- | SINE | Alu | AluJb |
CAediting_1261163 | chr18_36017188_- | SINE | Alu | AluJb |
CAediting_1261164 | chr18_36017198_- | SINE | Alu | AluJb |
CAediting_1261165 | chr18_36017218_- | SINE | Alu | AluJb |
CAediting_1261166 | chr18_36017244_- | SINE | Alu | AluJb |
CAediting_1261167 | chr18_36017257_- | SINE | Alu | AluJb |
CAediting_1261168 | chr18_36017279_- | SINE | Alu | AluJb |
CAediting_1261169 | chr18_36017294_- | SINE | Alu | AluJb |
CAediting_1261170 | chr18_36018402_- | SINE | Alu | AluY |
CAediting_1261171 | chr18_36018406_- | SINE | Alu | AluY |
CAediting_1261172 | chr18_36018412_- | SINE | Alu | AluY |
CAediting_1261173 | chr18_36018438_- | SINE | Alu | AluY |
CAediting_1261174 | chr18_36018545_- | SINE | Alu | AluY |
CAediting_1261175 | chr18_36019170_- | SINE | Alu | AluY |
CAediting_1261176 | chr18_36019176_- | SINE | Alu | AluY |
CAediting_1261177 | chr18_36019180_- | SINE | Alu | AluY |
CAediting_1261178 | chr18_36019184_- | SINE | Alu | AluY |
CAediting_1261179 | chr18_36019204_- | SINE | Alu | AluY |
CAediting_1261180 | chr18_36019205_- | SINE | Alu | AluY |
CAediting_1261181 | chr18_36019219_- | SINE | Alu | AluY |
CAediting_1261182 | chr18_36019229_- | SINE | Alu | AluY |
CAediting_1261183 | chr18_36019246_- | SINE | Alu | AluY |
CAediting_1261184 | chr18_36019272_- | SINE | Alu | AluY |
CAediting_1261185 | chr18_36019275_- | SINE | Alu | AluY |
CAediting_1261186 | chr18_36019276_- | SINE | Alu | AluY |
CAediting_1261187 | chr18_36019284_- | SINE | Alu | AluY |
CAediting_1261188 | chr18_36019285_- | SINE | Alu | AluY |
CAediting_1261189 | chr18_36019287_- | SINE | Alu | AluY |
CAediting_1261190 | chr18_36019288_- | SINE | Alu | AluY |
CAediting_1261191 | chr18_36019291_- | SINE | Alu | AluY |
CAediting_1261192 | chr18_36019297_- | SINE | Alu | AluY |
CAediting_1261193 | chr18_36019302_- | SINE | Alu | AluY |
CAediting_1261194 | chr18_36019310_- | SINE | Alu | AluY |
CAediting_1261195 | chr18_36019312_- | SINE | Alu | AluY |
CAediting_1261196 | chr18_36019331_- | SINE | Alu | AluY |
CAediting_1261197 | chr18_36019371_- | SINE | Alu | AluY |
CAediting_1261198 | chr18_36019374_- | SINE | Alu | AluY |
CAediting_1261199 | chr18_36019379_- | SINE | Alu | AluY |
CAediting_1261200 | chr18_36019380_- | SINE | Alu | AluY |
CAediting_1261201 | chr18_36019388_- | SINE | Alu | AluY |
CAediting_1261202 | chr18_36019402_- | SINE | Alu | AluY |
CAediting_1261203 | chr18_36019765_- | SINE | Alu | AluSx |
CAediting_1261204 | chr18_36019783_- | SINE | Alu | AluSx |
CAediting_1261205 | chr18_36019788_- | SINE | Alu | AluSx |
CAediting_1261206 | chr18_36019836_- | SINE | Alu | AluSx |
CAediting_1261207 | chr18_36019837_- | SINE | Alu | AluSx |
CAediting_1261208 | chr18_36019848_- | SINE | Alu | AluSx |
CAediting_1261209 | chr18_36019857_- | SINE | Alu | AluSx |
CAediting_1261210 | chr18_36019874_- | SINE | Alu | AluSx |
CAediting_1261211 | chr18_36019877_- | SINE | Alu | AluSx |
CAediting_1261212 | chr18_36019892_- | SINE | Alu | AluSx |
CAediting_1261213 | chr18_36019902_- | SINE | Alu | AluSx |
CAediting_1261214 | chr18_36019916_- | SINE | Alu | AluSx |
CAediting_1261215 | chr18_36019918_- | SINE | Alu | AluSx |
CAediting_1261216 | chr18_36019928_- | SINE | Alu | AluSx |
CAediting_1261217 | chr18_36019954_- | SINE | Alu | AluSx |
CAediting_1261218 | chr18_36019957_- | SINE | Alu | AluSx |
CAediting_1261219 | chr18_36019958_- | SINE | Alu | AluSx |
CAediting_1261220 | chr18_36019988_- | SINE | Alu | AluSx |
CAediting_1261221 | chr18_36020018_- | SINE | Alu | AluSx |
CAediting_1261222 | chr18_36020026_- | SINE | Alu | AluSx |
CAediting_1261223 | chr18_36020682_- | SINE | Alu | AluJr4 |
CAediting_1261224 | chr18_36020705_- | SINE | Alu | AluJr4 |
CAediting_1261225 | chr18_36020708_- | SINE | Alu | AluJr4 |
CAediting_1261226 | chr18_36020714_- | SINE | Alu | AluJr4 |
CAediting_1261227 | chr18_36020718_- | SINE | Alu | AluJr4 |
CAediting_1261228 | chr18_36020730_- | SINE | Alu | AluJr4 |
CAediting_1261229 | chr18_36020762_- | SINE | Alu | AluJr4 |
CAediting_1261230 | chr18_36020770_- | SINE | Alu | AluJr4 |
CAediting_1261231 | chr18_36020778_- | SINE | Alu | AluJr4 |
CAediting_1261232 | chr18_36020800_- | SINE | Alu | AluJr4 |
CAediting_1261233 | chr18_36021742_- | SINE | Alu | AluJr |
CAediting_1261234 | chr18_36021748_- | SINE | Alu | AluJr |
CAediting_1261235 | chr18_36021754_- | SINE | Alu | AluJr |
CAediting_1261236 | chr18_36021764_- | SINE | Alu | AluJr |
CAediting_1261237 | chr18_36021807_- | SINE | Alu | AluJr |
CAediting_1261238 | chr18_36021828_- | SINE | Alu | AluJr |
CAediting_1261239 | chr18_36021852_- | SINE | Alu | AluJr |
CAediting_1261240 | chr18_36021879_- | SINE | Alu | AluJr |
CAediting_1261241 | chr18_36021889_- | SINE | Alu | AluJr |
CAediting_1261242 | chr18_36021915_- | SINE | Alu | AluJr |
CAediting_1261243 | chr18_36022704_- | SINE | Alu | AluJr4 |
CAediting_1261244 | chr18_36022706_- | SINE | Alu | AluJr4 |
CAediting_1261245 | chr18_36022718_- | SINE | Alu | AluJr4 |
CAediting_1261246 | chr18_36022719_- | SINE | Alu | AluJr4 |
CAediting_1261247 | chr18_36022742_- | SINE | Alu | AluJr4 |
CAediting_1261248 | chr18_36022765_- | SINE | Alu | AluJr4 |
CAediting_1261249 | chr18_36022791_- | SINE | Alu | AluJr4 |
CAediting_1261250 | chr18_36022795_- | SINE | Alu | AluJr4 |
CAediting_1261251 | chr18_36022814_- | SINE | Alu | AluJr4 |
CAediting_1261252 | chr18_36022827_- | SINE | Alu | AluJr4 |
CAediting_1261253 | chr18_36022850_- | SINE | Alu | AluJr4 |
CAediting_1261254 | chr18_36022862_- | SINE | Alu | AluJr4 |
CAediting_1261255 | chr18_36022875_- | SINE | Alu | AluJr4 |
CAediting_1261256 | chr18_36022879_- | SINE | Alu | AluJr4 |
CAediting_1261257 | chr18_36022882_- | SINE | Alu | AluJr4 |
CAediting_1261258 | chr18_36022920_- | SINE | Alu | AluJr4 |
CAediting_1261259 | chr18_36022924_- | SINE | Alu | AluJr4 |
CAediting_1261260 | chr18_36022938_- | SINE | Alu | AluJr4 |
CAediting_1261261 | chr18_36022954_- | SINE | Alu | AluJr4 |
CAediting_1261262 | chr18_36024204_- | SINE | Alu | AluSx1 |
CAediting_1261263 | chr18_36024207_- | SINE | Alu | AluSx1 |
CAediting_1261264 | chr18_36024209_- | SINE | Alu | AluSx1 |
CAediting_1261265 | chr18_36024236_- | SINE | Alu | AluSx1 |
CAediting_1261266 | chr18_36024243_- | SINE | Alu | AluSx1 |
CAediting_1261267 | chr18_36024244_- | SINE | Alu | AluSx1 |
CAediting_1261268 | chr18_36024249_- | SINE | Alu | AluSx1 |
CAediting_1261269 | chr18_36024258_- | SINE | Alu | AluSx1 |
CAediting_1261270 | chr18_36024262_- | SINE | Alu | AluSx1 |
CAediting_1261271 | chr18_36024275_- | SINE | Alu | AluSx1 |
CAediting_1261272 | chr18_36024279_- | SINE | Alu | AluSx1 |
CAediting_1261273 | chr18_36024285_- | SINE | Alu | AluSx1 |
CAediting_1261274 | chr18_36024311_- | SINE | Alu | AluSx1 |
CAediting_1261275 | chr18_36024338_- | SINE | Alu | AluSx1 |
CAediting_1261276 | chr18_36024349_- | SINE | Alu | AluSx1 |
CAediting_1261277 | chr18_36024357_- | SINE | Alu | AluSx1 |
CAediting_1261278 | chr18_36024369_- | SINE | Alu | AluSx1 |
CAediting_1261279 | chr18_36024374_- | SINE | Alu | AluSx1 |
CAediting_1261280 | chr18_36024375_- | SINE | Alu | AluSx1 |
CAediting_1261281 | chr18_36024383_- | SINE | Alu | AluSx1 |
CAediting_1261282 | chr18_36024388_- | SINE | Alu | AluSx1 |
CAediting_1261283 | chr18_36024393_- | SINE | Alu | AluSx1 |
CAediting_1261284 | chr18_36024411_- | SINE | Alu | AluSx1 |
CAediting_1261285 | chr18_36024420_- | SINE | Alu | AluSx1 |
CAediting_1261286 | chr18_36024423_- | SINE | Alu | AluSx1 |
CAediting_1261287 | chr18_36024429_- | SINE | Alu | AluSx1 |
CAediting_1261288 | chr18_36024437_- | SINE | Alu | AluSx1 |
CAediting_1261289 | chr18_36029970_- | SINE | Alu | AluY |
CAediting_1261290 | chr18_36030073_- | SINE | Alu | AluY |
CAediting_1261291 | chr18_36030078_- | SINE | Alu | AluY |
CAediting_1261292 | chr18_36030322_- | SINE | Alu | AluSz |
CAediting_1261293 | chr18_36030355_- | SINE | Alu | AluSz |
CAediting_1261294 | chr18_36030361_- | SINE | Alu | AluSz |
CAediting_1261295 | chr18_36030371_- | SINE | Alu | AluSz |
CAediting_1261296 | chr18_36046741_- | SINE | Alu | AluJr |
CAediting_1261297 | chr18_36048163_- | SINE | Alu | AluSp |
CAediting_1261298 | chr18_36048178_- | SINE | Alu | AluSp |
CAediting_1261299 | chr18_36048204_- | SINE | Alu | AluSp |
CAediting_1261300 | chr18_36050688_- | SINE | Alu | AluJb |
CAediting_1261301 | chr18_36050800_- | SINE | Alu | AluJb |
CAediting_1261302 | chr18_36050809_- | SINE | Alu | AluJb |
CAediting_1261303 | chr18_36052723_- | SINE | Alu | AluSx3 |
CAediting_1261304 | chr18_36052767_- | SINE | Alu | AluSx3 |
CAediting_1261305 | chr18_36057160_- | SINE | Alu | AluJb |
CAediting_1261306 | chr18_36057171_- | SINE | Alu | AluJb |
CAediting_1261307 | chr18_36057529_- | SINE | Alu | AluJb |
CAediting_1261308 | chr18_36059333_- | SINE | Alu | AluSz6 |
CAediting_1261309 | chr18_36060250_- | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for RPRD1A |
RNA A-to-I editing(s) in the alternative splicing sites. |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000141425.16.RPRD1A. |
Correlation between RNA A-to-I editing and PSI for ENSG00000141425.16.RPRD1A. |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPRD1A |
Differential gene expressions between RNA A-to-I edited and non-edited tumor samples. * The grey color means N/A. |
Correlation between RNA A-to-I editing and gene expression. |
- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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Protein coding region RNA A-to-I editings for RPRD1A |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for RPRD1A |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000141425.16 | ENST00000399022 | hsa-miR-624-3p | 35992035 | 35992041 | 7mer-m8 | 35992034 | 35992053 | 144 | -16.55 |
CAediting_393 | chr1_1167164_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-200b-3p | 35991458 | 35991464 | 7mer-m8 | 35991457 | 35991481 | 151 | -15.16 |
CAediting_393 | chr1_1167164_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-200b-3p | 35992798 | 35992804 | 7mer-m8 | 35992797 | 35992817 | 149 | -12.15 |
CAediting_688081 | chr9_63819627_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-4477b | 35991563 | 35991569 | 7mer-m8 | 35991562 | 35991583 | 148 | -13.93 |
CAediting_1160181 | chr17_7017644_- | ENSG00000141425.16 | ENST00000590898 | hsa-miR-195-3p | 35990021 | 35990027 | 7mer-m8 | 35990020 | 35990040 | 148 | -12.08 |
CAediting_117844 | chr1_162342605_+ | ENSG00000141425.16 | ENST00000590898 | hsa-miR-556-3p | 35989933 | 35989939 | 7mer-m8 | 35989932 | 35989955 | 152 | -14.45 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-548aa | 35992369 | 35992375 | 7mer-m8 | 35992368 | 35992392 | 140 | -12.39 |
CAediting_1160181 | chr17_7017644_- | ENSG00000141425.16 | ENST00000399022 | hsa-miR-195-3p | 35990021 | 35990027 | 7mer-m8 | 35990020 | 35990040 | 148 | -12.08 |
CAediting_1351755 | chr19_40282625_- | ENSG00000141425.16 | ENST00000399022 | hsa-miR-641 | 35991837 | 35991843 | 7mer-m8 | 35991836 | 35991859 | 146 | -15.66 |
CAediting_1351755 | chr19_40282625_- | ENSG00000141425.16 | ENST00000399022 | hsa-miR-641 | 35992640 | 35992645 | 6mer | 35992639 | 35992662 | 152 | -20.78 |
CAediting_117844 | chr1_162342605_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-556-3p | 35989933 | 35989939 | 7mer-m8 | 35989932 | 35989955 | 152 | -14.45 |
CAediting_396018 | chr5_1062918_- | ENSG00000141425.16 | ENST00000399022 | hsa-miR-4635 | 35990663 | 35990670 | 8mer-1a | 35990663 | 35990685 | 154 | -21.18 |
CAediting_442554 | chr5_154685830_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-1303 | 35991693 | 35991700 | 8mer-1a | 35991693 | 35991713 | 157 | -23.18 |
CAediting_1160181 | chr17_7017644_- | ENSG00000141425.16 | ENST00000357384 | hsa-miR-195-3p | 35990021 | 35990027 | 7mer-m8 | 35990020 | 35990040 | 148 | -12.08 |
CAediting_117844 | chr1_162342605_+ | ENSG00000141425.16 | ENST00000357384 | hsa-miR-556-3p | 35989933 | 35989939 | 7mer-m8 | 35989932 | 35989955 | 152 | -14.45 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000141425.16 | ENST00000585953 | hsa-miR-548aa | 36025707 | 36025713 | 7mer-m8 | 36025706 | 36025730 | 146 | -12.15 |
CAediting_1368054 | chr19_46709310_- | ENSG00000141425.16 | ENST00000585953 | hsa-miR-320e | 36025994 | 36026000 | 7mer-m8 | 36025993 | 36026013 | 153 | -23.95 |
CAediting_86358 | chr1_109598906_+ | ENSG00000141425.16 | ENST00000585953 | hsa-miR-197-5p | 36026483 | 36026489 | 7mer-m8 | 36026482 | 36026506 | 158 | -30.81 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1399425 | chr20_1392958_- | ENSG00000141425.16 | ENST00000585879 | hsa-miR-6869-5p | 35988748 | 35988754 | 7mer-m8 | 35988747 | 35988768 | 141 | -12.79 |
CAediting_393 | chr1_1167164_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-200b-3p | 35991798 | 35991805 | 8mer-1a | 35991798 | 35991820 | 147 | -13.12 |
CAediting_688080 | chr9_63819626_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-4477b | 35992546 | 35992552 | 7mer-m8 | 35992545 | 35992567 | 150 | -11.25 |
CAediting_688081 | chr9_63819627_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-4477b | 35992546 | 35992552 | 7mer-m8 | 35992545 | 35992567 | 150 | -11.25 |
CAediting_980496 | chr14_31014685_- | ENSG00000141425.16 | ENST00000399022 | hsa-miR-624-3p | 35992863 | 35992868 | 6mer | 35992862 | 35992881 | 148 | -19.14 |
CAediting_580943 | chr7_100356700_+ | ENSG00000141425.16 | ENST00000399022 | hsa-miR-6840-3p | 35991124 | 35991131 | 8mer-1a | 35991124 | 35991145 | 147 | -21.16 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000141425.16 | ENST00000585953 | hsa-miR-548aa | 36026745 | 36026751 | 7mer-m8 | 36026744 | 36026768 | 151 | -8.5 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000141425.16 | ENST00000585953 | hsa-miR-548aa | 36026745 | 36026751 | 7mer-m8 | 36026744 | 36026768 | 151 | -8.5 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000141425.16 | ENST00000585953 | hsa-miR-548aa | 36026745 | 36026751 | 7mer-m8 | 36026744 | 36026768 | 151 | -8.5 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000141425.16 | ENST00000585953 | hsa-miR-548aa | 36026283 | 36026290 | 8mer-1a | 36026283 | 36026308 | 153 | -9.16 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000141425.16 | ENST00000585953 | hsa-miR-548aa | 36026283 | 36026290 | 8mer-1a | 36026283 | 36026308 | 153 | -9.16 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000141425.16 | ENST00000585953 | hsa-miR-548aa | 36026283 | 36026290 | 8mer-1a | 36026283 | 36026308 | 153 | -9.16 |
CAediting_980496 | chr14_31014685_- | ENSG00000141425.16 | ENST00000585953 | hsa-miR-624-3p | 36025812 | 36025818 | 7mer-m8 | 36025811 | 36025833 | 145 | -15.26 |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for RPRD1A |
- RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
RNA A-to-I editing in RNA structures for Minimum free energy (MFE). |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for RPRD1A |
Correlation between ADAR gene expression and RNA editing frequency |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
STAD | CAediting_1261183 | chr18_36019246_- | . | . | . | . | 0.0324316988044088 | 0.21968154754143 |
STAD | CAediting_1261267 | chr18_36024244_- | 0.0100671081066278 | 0.197475004855115 | . | . | . | . |
ESCA | CAediting_1261267 | chr18_36024244_- | . | . | . | . | 0.00275954983204535 | 0.334506858705605 |
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Relation with cancer stages for RPRD1A |
Correlation between Cancer stages and RNA editing frequency |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for RPRD1A |
Correlation between RNA editing and survival |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for RPRD1A |
Approved drugs targeting this gene. (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPRD1A |
Diseases associated with this gene. (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |