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Editing gene: RIF1 (CAeditome ID:55183)

Gene summary for RIF1

Gene summary

Gene information	Gene symbol	RIF1
	Gene ID	55183
	Gene name	replication timing regulatory factor 1
	Synonyms	-
	Cytomap	2q23.3
	Type of gene	protein-coding
	Description	telomere-associated protein RIF1RAP1 interacting factor homolograp1-interacting factor 1 homolog
	Modification date	20210518
	UniProtAcc	Q5UIP0
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
RIF1	GO:0006974	Telomere-associated protein RIF1	28241136
RIF1	GO:0043247	Telomere-associated protein RIF1	15583028
RIF1	GO:2000042	Telomere-associated protein RIF1	23333306
RIF1	GO:2001034	Telomere-associated protein RIF1	28241136
RIF1	GO:0000793	Telomere-associated protein RIF1	15583028
RIF1	GO:0005654	Telomere-associated protein RIF1	0000052
RIF1	GO:0005886	Telomere-associated protein RIF1	0000052
RIF1	GO:0016604	Telomere-associated protein RIF1	0000052
RIF1	GO:0031965	Telomere-associated protein RIF1	0000052
RIF1	GO:0035861	Telomere-associated protein RIF1	28241136
RIF1	GO:0051233	Telomere-associated protein RIF1	15583028

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RNA A-to-I events for RIF1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000080345.16

RNA A-to-I editing events in Cancer.

CAediting_218046(151418236, +), CAediting_218047(151418298, +), CAediting_218048(151419353, +), CAediting_218049(151420461, +), CAediting_218050(151420465, +), CAediting_218051(151420521, +), CAediting_218052(151420526, +), CAediting_218053(151420541, +), CAediting_218054(151420552, +), CAediting_218055(151420554, +), CAediting_218056(151420583, +), CAediting_218057(151420585, +), CAediting_218058(151420586, +), CAediting_218059(151420587, +), CAediting_218060(151420590, +), CAediting_218061(151420616, +), CAediting_218062(151420622, +), CAediting_218063(151420633, +), CAediting_218064(151420638, +), CAediting_218065(151420639, +), CAediting_218066(151420692, +), CAediting_218067(151420700, +), CAediting_218068(151420717, +), CAediting_218069(151421612, +), CAediting_218070(151421620, +), CAediting_218071(151422553, +), CAediting_218072(151422593, +), CAediting_218073(151422617, +), CAediting_218074(151422632, +), CAediting_218075(151422639, +), CAediting_218076(151422702, +), CAediting_218077(151422791, +), CAediting_218078(151422793, +), CAediting_218079(151424221, +), CAediting_218080(151424249, +), CAediting_218081(151424304, +), CAediting_218082(151424364, +), CAediting_218083(151425766, +), CAediting_218084(151425767, +), CAediting_218085(151425770, +), CAediting_218086(151426681, +), CAediting_218087(151426682, +), CAediting_218088(151426686, +), CAediting_218089(151426727, +), CAediting_218090(151426747, +), CAediting_218091(151426827, +), CAediting_218092(151426881, +), CAediting_218093(151426923, +), CAediting_218094(151427235, +), CAediting_218095(151427243, +), CAediting_218096(151427310, +), CAediting_218097(151427706, +), CAediting_218098(151427711, +), CAediting_218099(151427801, +), CAediting_218100(151427810, +), CAediting_218101(151428095, +), CAediting_218102(151428125, +), CAediting_218103(151428150, +), CAediting_218104(151428154, +), CAediting_218105(151430868, +), CAediting_218106(151431544, +), CAediting_218107(151431585, +), CAediting_218108(151432078, +), CAediting_218109(151433605, +), CAediting_218110(151434020, +), CAediting_218111(151434041, +), CAediting_218112(151434125, +), CAediting_218113(151437429, +), CAediting_218114(151437435, +), CAediting_218115(151437564, +), CAediting_218116(151437570, +), CAediting_218117(151439866, +), CAediting_218118(151441118, +), CAediting_218119(151441170, +), CAediting_218120(151447205, +), CAediting_218121(151447219, +), CAediting_218122(151447809, +), CAediting_218123(151453362, +), CAediting_218124(151453367, +), CAediting_218125(151453456, +), CAediting_218126(151466959, +), CAediting_218127(151467445, +), CAediting_218128(151477470, +), CAediting_218129(151477479, +), CAediting_218130(151477494, +), CAediting_218131(151477495, +), CAediting_218132(151477532, +), CAediting_218133(151477540, +), CAediting_218134(151477544, +), CAediting_218135(151477556, +), CAediting_218136(151477580, +), CAediting_218137(151477581, +), CAediting_218138(151477599, +), CAediting_218139(151477604, +), CAediting_218140(151477612, +), CAediting_218141(151477627, +), CAediting_218142(151477765, +), CAediting_218143(151477779, +), CAediting_218144(151477784, +), CAediting_218145(151477809, +), CAediting_218146(151477810, +), CAediting_218147(151477827, +), CAediting_218148(151477835, +), CAediting_218149(151477836, +), CAediting_218150(151477837, +), CAediting_218151(151477839, +), CAediting_218152(151477849, +), CAediting_218153(151477875, +), CAediting_218154(151477876, +), CAediting_218155(151477884, +), CAediting_218156(151477890, +), CAediting_218157(151477893, +), CAediting_218158(151477907, +), CAediting_218159(151477930, +), CAediting_218160(151477931, +), CAediting_218161(151477932, +), CAediting_218162(151477972, +), CAediting_218163(151478248, +), CAediting_218164(151478276, +), CAediting_218165(151478284, +), CAediting_218166(151478285, +), CAediting_218167(151478286, +), CAediting_218168(151478287, +), CAediting_218169(151478300, +), CAediting_218170(151478308, +), CAediting_218171(151478309, +), CAediting_218172(151478310, +), CAediting_218173(151478324, +), CAediting_218174(151478325, +), CAediting_218175(151478326, +), CAediting_218176(151478327, +), CAediting_218177(151478332, +), CAediting_218178(151478333, +), CAediting_218179(151478335, +), CAediting_218180(151478336, +), CAediting_218181(151478339, +), CAediting_218182(151478365, +), CAediting_218183(151478366, +), CAediting_218184(151478371, +), CAediting_218185(151478375, +), CAediting_218186(151478379, +), CAediting_218187(151478388, +), CAediting_218188(151478390, +), CAediting_218189(151478397, +), CAediting_218190(151478398, +), CAediting_218191(151478407, +), CAediting_218192(151478414, +), CAediting_218193(151478427, +), CAediting_218194(151478431, +), CAediting_218195(151478456, +), CAediting_218196(151478462, +), CAediting_218197(151478479, +), CAediting_218198(151478480, +), CAediting_218199(151478481, +), CAediting_218200(151478483, +), CAediting_218201(151478484, +), CAediting_218202(151478485, +), CAediting_218203(151481763, +),

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RNA editing positional annotations for RIF1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_218046	chr2_151418236_+	ncRNA_intronic
CAediting_218047	chr2_151418298_+	ncRNA_intronic
CAediting_218048	chr2_151419353_+	ncRNA_intronic
CAediting_218049	chr2_151420461_+	ncRNA_intronic
CAediting_218050	chr2_151420465_+	ncRNA_intronic
CAediting_218051	chr2_151420521_+	ncRNA_intronic
CAediting_218052	chr2_151420526_+	ncRNA_intronic
CAediting_218053	chr2_151420541_+	ncRNA_intronic
CAediting_218054	chr2_151420552_+	ncRNA_intronic
CAediting_218055	chr2_151420554_+	ncRNA_intronic
CAediting_218056	chr2_151420583_+	ncRNA_intronic
CAediting_218057	chr2_151420585_+	ncRNA_intronic
CAediting_218058	chr2_151420586_+	ncRNA_intronic
CAediting_218059	chr2_151420587_+	ncRNA_intronic
CAediting_218060	chr2_151420590_+	ncRNA_intronic
CAediting_218061	chr2_151420616_+	ncRNA_intronic
CAediting_218062	chr2_151420622_+	ncRNA_intronic
CAediting_218063	chr2_151420633_+	ncRNA_intronic
CAediting_218064	chr2_151420638_+	ncRNA_intronic
CAediting_218065	chr2_151420639_+	ncRNA_intronic
CAediting_218066	chr2_151420692_+	ncRNA_intronic
CAediting_218067	chr2_151420700_+	ncRNA_intronic
CAediting_218068	chr2_151420717_+	ncRNA_intronic
CAediting_218069	chr2_151421612_+	ncRNA_intronic
CAediting_218070	chr2_151421620_+	ncRNA_intronic
CAediting_218071	chr2_151422553_+	ncRNA_intronic
CAediting_218072	chr2_151422593_+	ncRNA_intronic
CAediting_218073	chr2_151422617_+	ncRNA_intronic
CAediting_218074	chr2_151422632_+	ncRNA_intronic
CAediting_218075	chr2_151422639_+	ncRNA_intronic
CAediting_218076	chr2_151422702_+	ncRNA_intronic
CAediting_218077	chr2_151422791_+	ncRNA_intronic
CAediting_218078	chr2_151422793_+	ncRNA_intronic
CAediting_218079	chr2_151424221_+	intronic
CAediting_218080	chr2_151424249_+	intronic
CAediting_218081	chr2_151424304_+	intronic
CAediting_218082	chr2_151424364_+	intronic
CAediting_218083	chr2_151425766_+	intronic
CAediting_218084	chr2_151425767_+	intronic
CAediting_218085	chr2_151425770_+	intronic
CAediting_218086	chr2_151426681_+	intronic
CAediting_218087	chr2_151426682_+	intronic
CAediting_218088	chr2_151426686_+	intronic
CAediting_218089	chr2_151426727_+	intronic
CAediting_218090	chr2_151426747_+	intronic
CAediting_218091	chr2_151426827_+	intronic
CAediting_218092	chr2_151426881_+	intronic
CAediting_218093	chr2_151426923_+	intronic
CAediting_218094	chr2_151427235_+	intronic
CAediting_218095	chr2_151427243_+	intronic
CAediting_218096	chr2_151427310_+	intronic
CAediting_218097	chr2_151427706_+	intronic
CAediting_218098	chr2_151427711_+	intronic
CAediting_218099	chr2_151427801_+	intronic
CAediting_218100	chr2_151427810_+	intronic
CAediting_218101	chr2_151428095_+	intronic
CAediting_218102	chr2_151428125_+	intronic
CAediting_218103	chr2_151428150_+	intronic
CAediting_218104	chr2_151428154_+	intronic
CAediting_218105	chr2_151430868_+	intronic
CAediting_218106	chr2_151431544_+	intronic
CAediting_218107	chr2_151431585_+	intronic
CAediting_218108	chr2_151432078_+	intronic
CAediting_218109	chr2_151433605_+	intronic
CAediting_218110	chr2_151434020_+	intronic
CAediting_218111	chr2_151434041_+	intronic
CAediting_218112	chr2_151434125_+	intronic
CAediting_218113	chr2_151437429_+	intronic
CAediting_218114	chr2_151437435_+	intronic
CAediting_218115	chr2_151437564_+	intronic
CAediting_218116	chr2_151437570_+	intronic
CAediting_218117	chr2_151439866_+	intronic
CAediting_218118	chr2_151441118_+	intronic
CAediting_218119	chr2_151441170_+	intronic
CAediting_218120	chr2_151447205_+	intronic
CAediting_218121	chr2_151447219_+	intronic
CAediting_218122	chr2_151447809_+	intronic
CAediting_218123	chr2_151453362_+	intronic
CAediting_218124	chr2_151453367_+	intronic
CAediting_218125	chr2_151453456_+	intronic
CAediting_218126	chr2_151466959_+	intronic
CAediting_218127	chr2_151467445_+	intronic
CAediting_218128	chr2_151477470_+	UTR3
CAediting_218129	chr2_151477479_+	UTR3
CAediting_218130	chr2_151477494_+	UTR3
CAediting_218131	chr2_151477495_+	UTR3
CAediting_218132	chr2_151477532_+	UTR3
CAediting_218133	chr2_151477540_+	UTR3
CAediting_218134	chr2_151477544_+	UTR3
CAediting_218135	chr2_151477556_+	UTR3
CAediting_218136	chr2_151477580_+	UTR3
CAediting_218137	chr2_151477581_+	UTR3
CAediting_218138	chr2_151477599_+	UTR3
CAediting_218139	chr2_151477604_+	UTR3
CAediting_218140	chr2_151477612_+	UTR3
CAediting_218141	chr2_151477627_+	UTR3
CAediting_218142	chr2_151477765_+	UTR3
CAediting_218143	chr2_151477779_+	UTR3
CAediting_218144	chr2_151477784_+	UTR3
CAediting_218145	chr2_151477809_+	UTR3
CAediting_218146	chr2_151477810_+	UTR3
CAediting_218147	chr2_151477827_+	UTR3
CAediting_218148	chr2_151477835_+	UTR3
CAediting_218149	chr2_151477836_+	UTR3
CAediting_218150	chr2_151477837_+	UTR3
CAediting_218151	chr2_151477839_+	UTR3
CAediting_218152	chr2_151477849_+	UTR3
CAediting_218153	chr2_151477875_+	UTR3
CAediting_218154	chr2_151477876_+	UTR3
CAediting_218155	chr2_151477884_+	UTR3
CAediting_218156	chr2_151477890_+	UTR3
CAediting_218157	chr2_151477893_+	UTR3
CAediting_218158	chr2_151477907_+	UTR3
CAediting_218159	chr2_151477930_+	UTR3
CAediting_218160	chr2_151477931_+	UTR3
CAediting_218161	chr2_151477932_+	UTR3
CAediting_218162	chr2_151477972_+	UTR3
CAediting_218163	chr2_151478248_+	UTR3
CAediting_218164	chr2_151478276_+	UTR3
CAediting_218165	chr2_151478284_+	UTR3
CAediting_218166	chr2_151478285_+	UTR3
CAediting_218167	chr2_151478286_+	UTR3
CAediting_218168	chr2_151478287_+	UTR3
CAediting_218169	chr2_151478300_+	UTR3
CAediting_218170	chr2_151478308_+	UTR3
CAediting_218171	chr2_151478309_+	UTR3
CAediting_218172	chr2_151478310_+	UTR3
CAediting_218173	chr2_151478324_+	UTR3
CAediting_218174	chr2_151478325_+	UTR3
CAediting_218175	chr2_151478326_+	UTR3
CAediting_218176	chr2_151478327_+	UTR3
CAediting_218177	chr2_151478332_+	UTR3
CAediting_218178	chr2_151478333_+	UTR3
CAediting_218179	chr2_151478335_+	UTR3
CAediting_218180	chr2_151478336_+	UTR3
CAediting_218181	chr2_151478339_+	UTR3
CAediting_218182	chr2_151478365_+	UTR3
CAediting_218183	chr2_151478366_+	UTR3
CAediting_218184	chr2_151478371_+	UTR3
CAediting_218185	chr2_151478375_+	UTR3
CAediting_218186	chr2_151478379_+	UTR3
CAediting_218187	chr2_151478388_+	UTR3
CAediting_218188	chr2_151478390_+	UTR3
CAediting_218189	chr2_151478397_+	UTR3
CAediting_218190	chr2_151478398_+	UTR3
CAediting_218191	chr2_151478407_+	UTR3
CAediting_218192	chr2_151478414_+	UTR3
CAediting_218193	chr2_151478427_+	UTR3
CAediting_218194	chr2_151478431_+	UTR3
CAediting_218195	chr2_151478456_+	UTR3
CAediting_218196	chr2_151478462_+	UTR3
CAediting_218197	chr2_151478479_+	UTR3
CAediting_218198	chr2_151478480_+	UTR3
CAediting_218199	chr2_151478481_+	UTR3
CAediting_218200	chr2_151478483_+	UTR3
CAediting_218201	chr2_151478484_+	UTR3
CAediting_218202	chr2_151478485_+	UTR3
CAediting_218203	chr2_151481763_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_218046	chr2_151418236_+	SINE	Alu	AluSx1
CAediting_218047	chr2_151418298_+	SINE	Alu	AluSx1
CAediting_218048	chr2_151419353_+	SINE	Alu	AluSc5
CAediting_218049	chr2_151420461_+	SINE	Alu	AluJr
CAediting_218050	chr2_151420465_+	SINE	Alu	AluJr
CAediting_218051	chr2_151420521_+	SINE	Alu	AluJr
CAediting_218052	chr2_151420526_+	SINE	Alu	AluJr
CAediting_218053	chr2_151420541_+	SINE	Alu	AluJr
CAediting_218054	chr2_151420552_+	SINE	Alu	AluJr
CAediting_218055	chr2_151420554_+	SINE	Alu	AluJr
CAediting_218056	chr2_151420583_+	SINE	Alu	AluJr
CAediting_218057	chr2_151420585_+	SINE	Alu	AluJr
CAediting_218058	chr2_151420586_+	SINE	Alu	AluJr
CAediting_218059	chr2_151420587_+	SINE	Alu	AluJr
CAediting_218060	chr2_151420590_+	SINE	Alu	AluJr
CAediting_218061	chr2_151420616_+	SINE	Alu	AluJr
CAediting_218062	chr2_151420622_+	SINE	Alu	AluJr
CAediting_218063	chr2_151420633_+	SINE	Alu	AluJr
CAediting_218064	chr2_151420638_+	SINE	Alu	AluJr
CAediting_218065	chr2_151420639_+	SINE	Alu	AluJr
CAediting_218066	chr2_151420692_+	SINE	Alu	AluJr
CAediting_218067	chr2_151420700_+	SINE	Alu	AluJr
CAediting_218068	chr2_151420717_+	SINE	Alu	AluJr
CAediting_218069	chr2_151421612_+	SINE	Alu	FLAM_C
CAediting_218070	chr2_151421620_+	SINE	Alu	FLAM_C
CAediting_218071	chr2_151422553_+	SINE	Alu	AluSx1
CAediting_218072	chr2_151422593_+	SINE	Alu	AluSx1
CAediting_218073	chr2_151422617_+	SINE	Alu	AluSx1
CAediting_218074	chr2_151422632_+	SINE	Alu	AluSx1
CAediting_218075	chr2_151422639_+	SINE	Alu	AluSx1
CAediting_218076	chr2_151422702_+	SINE	Alu	AluSx1
CAediting_218077	chr2_151422791_+	SINE	Alu	AluSx1
CAediting_218078	chr2_151422793_+	SINE	Alu	AluSx1
CAediting_218079	chr2_151424221_+	SINE	Alu	AluSc8
CAediting_218080	chr2_151424249_+	SINE	Alu	AluSc8
CAediting_218081	chr2_151424304_+	SINE	Alu	AluSc8
CAediting_218082	chr2_151424364_+	SINE	Alu	AluSc8
CAediting_218083	chr2_151425766_+	SINE	Alu	AluSz
CAediting_218084	chr2_151425767_+	SINE	Alu	AluSz
CAediting_218085	chr2_151425770_+	SINE	Alu	AluSz
CAediting_218086	chr2_151426681_+	SINE	Alu	AluSx1
CAediting_218087	chr2_151426682_+	SINE	Alu	AluSx1
CAediting_218088	chr2_151426686_+	SINE	Alu	AluSx1
CAediting_218089	chr2_151426727_+	SINE	Alu	AluSx1
CAediting_218090	chr2_151426747_+	SINE	Alu	AluSx1
CAediting_218091	chr2_151426827_+	SINE	Alu	AluSx1
CAediting_218092	chr2_151426881_+	SINE	Alu	AluSx1
CAediting_218093	chr2_151426923_+	SINE	Alu	AluSx1
CAediting_218094	chr2_151427235_+	SINE	Alu	AluSp
CAediting_218095	chr2_151427243_+	SINE	Alu	AluSp
CAediting_218096	chr2_151427310_+	SINE	Alu	AluSp
CAediting_218097	chr2_151427706_+	SINE	Alu	AluSz
CAediting_218098	chr2_151427711_+	SINE	Alu	AluSz
CAediting_218099	chr2_151427801_+	SINE	Alu	AluSx
CAediting_218100	chr2_151427810_+	SINE	Alu	AluSx
CAediting_218101	chr2_151428095_+	SINE	Alu	AluSz
CAediting_218102	chr2_151428125_+	SINE	Alu	AluSz
CAediting_218103	chr2_151428150_+	SINE	Alu	AluSz
CAediting_218104	chr2_151428154_+	SINE	Alu	AluSz
CAediting_218105	chr2_151430868_+	SINE	Alu	AluJb
CAediting_218106	chr2_151431544_+	SINE	Alu	AluSp
CAediting_218107	chr2_151431585_+	SINE	Alu	AluSp
CAediting_218108	chr2_151432078_+	SINE	Alu	AluSz
CAediting_218109	chr2_151433605_+	SINE	Alu	AluSz
CAediting_218110	chr2_151434020_+	SINE	Alu	AluSx3
CAediting_218111	chr2_151434041_+	SINE	Alu	AluSx3
CAediting_218112	chr2_151434125_+	SINE	Alu	AluSx3
CAediting_218113	chr2_151437429_+	SINE	Alu	AluSz6
CAediting_218114	chr2_151437435_+	SINE	Alu	AluSz6
CAediting_218115	chr2_151437564_+	SINE	Alu	AluSz6
CAediting_218116	chr2_151437570_+	SINE	Alu	AluSz6
CAediting_218117	chr2_151439866_+	SINE	Alu	AluSx
CAediting_218118	chr2_151441118_+	SINE	Alu	AluJb
CAediting_218119	chr2_151441170_+	SINE	Alu	AluJb
CAediting_218120	chr2_151447205_+	SINE	Alu	AluY
CAediting_218121	chr2_151447219_+	SINE	Alu	AluY
CAediting_218122	chr2_151447809_+	SINE	Alu	AluSx
CAediting_218123	chr2_151453362_+	SINE	Alu	AluSx
CAediting_218124	chr2_151453367_+	SINE	Alu	AluSx
CAediting_218125	chr2_151453456_+	SINE	Alu	AluSx
CAediting_218126	chr2_151466959_+	SINE	Alu	AluSx
CAediting_218127	chr2_151467445_+	SINE	Alu	AluSg
CAediting_218128	chr2_151477470_+	SINE	Alu	AluY
CAediting_218129	chr2_151477479_+	SINE	Alu	AluY
CAediting_218130	chr2_151477494_+	SINE	Alu	AluY
CAediting_218131	chr2_151477495_+	SINE	Alu	AluY
CAediting_218132	chr2_151477532_+	SINE	Alu	AluY
CAediting_218133	chr2_151477540_+	SINE	Alu	AluY
CAediting_218134	chr2_151477544_+	SINE	Alu	AluY
CAediting_218135	chr2_151477556_+	SINE	Alu	AluY
CAediting_218136	chr2_151477580_+	SINE	Alu	AluY
CAediting_218137	chr2_151477581_+	SINE	Alu	AluY
CAediting_218138	chr2_151477599_+	SINE	Alu	AluY
CAediting_218139	chr2_151477604_+	SINE	Alu	AluY
CAediting_218140	chr2_151477612_+	SINE	Alu	AluY
CAediting_218141	chr2_151477627_+	SINE	Alu	AluY
CAediting_218142	chr2_151477765_+	SINE	Alu	AluSq
CAediting_218143	chr2_151477779_+	SINE	Alu	AluSq
CAediting_218144	chr2_151477784_+	SINE	Alu	AluSq
CAediting_218145	chr2_151477809_+	SINE	Alu	AluSq
CAediting_218146	chr2_151477810_+	SINE	Alu	AluSq
CAediting_218147	chr2_151477827_+	SINE	Alu	AluSq
CAediting_218148	chr2_151477835_+	SINE	Alu	AluSq
CAediting_218149	chr2_151477836_+	SINE	Alu	AluSq
CAediting_218150	chr2_151477837_+	SINE	Alu	AluSq
CAediting_218151	chr2_151477839_+	SINE	Alu	AluSq
CAediting_218152	chr2_151477849_+	SINE	Alu	AluSq
CAediting_218153	chr2_151477875_+	SINE	Alu	AluSq
CAediting_218154	chr2_151477876_+	SINE	Alu	AluSq
CAediting_218155	chr2_151477884_+	SINE	Alu	AluSq
CAediting_218156	chr2_151477890_+	SINE	Alu	AluSq
CAediting_218157	chr2_151477893_+	SINE	Alu	AluSq
CAediting_218158	chr2_151477907_+	SINE	Alu	AluSq
CAediting_218159	chr2_151477930_+	SINE	Alu	AluSq
CAediting_218160	chr2_151477931_+	SINE	Alu	AluSq
CAediting_218161	chr2_151477932_+	SINE	Alu	AluSq
CAediting_218162	chr2_151477972_+	SINE	Alu	AluSq
CAediting_218163	chr2_151478248_+	SINE	Alu	AluSz6
CAediting_218164	chr2_151478276_+	SINE	Alu	AluSz6
CAediting_218165	chr2_151478284_+	SINE	Alu	AluSz6
CAediting_218166	chr2_151478285_+	SINE	Alu	AluSz6
CAediting_218167	chr2_151478286_+	SINE	Alu	AluSz6
CAediting_218168	chr2_151478287_+	SINE	Alu	AluSz6
CAediting_218169	chr2_151478300_+	SINE	Alu	AluSz6
CAediting_218170	chr2_151478308_+	SINE	Alu	AluSz6
CAediting_218171	chr2_151478309_+	SINE	Alu	AluSz6
CAediting_218172	chr2_151478310_+	SINE	Alu	AluSz6
CAediting_218173	chr2_151478324_+	SINE	Alu	AluSz6
CAediting_218174	chr2_151478325_+	SINE	Alu	AluSz6
CAediting_218175	chr2_151478326_+	SINE	Alu	AluSz6
CAediting_218176	chr2_151478327_+	SINE	Alu	AluSz6
CAediting_218177	chr2_151478332_+	SINE	Alu	AluSz6
CAediting_218178	chr2_151478333_+	SINE	Alu	AluSz6
CAediting_218179	chr2_151478335_+	SINE	Alu	AluSz6
CAediting_218180	chr2_151478336_+	SINE	Alu	AluSz6
CAediting_218181	chr2_151478339_+	SINE	Alu	AluSz6
CAediting_218182	chr2_151478365_+	SINE	Alu	AluSz6
CAediting_218183	chr2_151478366_+	SINE	Alu	AluSz6
CAediting_218184	chr2_151478371_+	SINE	Alu	AluSz6
CAediting_218185	chr2_151478375_+	SINE	Alu	AluSz6
CAediting_218186	chr2_151478379_+	SINE	Alu	AluSz6
CAediting_218187	chr2_151478388_+	SINE	Alu	AluSz6
CAediting_218188	chr2_151478390_+	SINE	Alu	AluSz6
CAediting_218189	chr2_151478397_+	SINE	Alu	AluSz6
CAediting_218190	chr2_151478398_+	SINE	Alu	AluSz6
CAediting_218191	chr2_151478407_+	SINE	Alu	AluSz6
CAediting_218192	chr2_151478414_+	SINE	Alu	AluSz6
CAediting_218193	chr2_151478427_+	SINE	Alu	AluSz6
CAediting_218194	chr2_151478431_+	SINE	Alu	AluSz6
CAediting_218195	chr2_151478456_+	SINE	Alu	AluSz6
CAediting_218196	chr2_151478462_+	SINE	Alu	AluSz6
CAediting_218197	chr2_151478479_+	SINE	Alu	AluSz6
CAediting_218198	chr2_151478480_+	SINE	Alu	AluSz6
CAediting_218199	chr2_151478481_+	SINE	Alu	AluSz6
CAediting_218200	chr2_151478483_+	SINE	Alu	AluSz6
CAediting_218201	chr2_151478484_+	SINE	Alu	AluSz6
CAediting_218202	chr2_151478485_+	SINE	Alu	AluSz6
CAediting_218203	chr2_151481763_+	DNA	hAT-Charlie	MER1B

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RNA A-to-I editing events in the alternative splicing sites for RIF1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000080345.16.RIF1.

Correlation between RNA A-to-I editing and PSI for ENSG00000080345.16.RIF1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RIF1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for RIF1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for RIF1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_218131	chr2_151477495_+	ENSG00000080345.16	ENST00000243326	hsa-miR-17-3p	151477488	151477494	7mer-m8	151477474	151477495	155.00	-18.51
CAediting_218131	chr2_151477495_+	ENSG00000080345.16	ENST00000243326	hsa-miR-596	151477491	151477497	7mer-m8	151477478	151477498	140.00	-18.43
CAediting_218148	chr2_151477835_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6771-5p	151477829	151477836	8mer-1a	151477817	151477836	160.00	-29.74
CAediting_218153	chr2_151477875_+	ENSG00000080345.16	ENST00000243326	hsa-miR-551b-5p	151477872	151477878	7mer-m8	151477858	151477879	157.00	-17.82
CAediting_218170	chr2_151478308_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6084	151478302	151478309	8mer-1a	151478289	151478309	141.00	-19.80
CAediting_218170	chr2_151478308_+	ENSG00000080345.16	ENST00000243326	hsa-miR-718	151478303	151478309	7mer-m8	151478290	151478310	143.00	-18.37
CAediting_218172	chr2_151478310_+	ENSG00000080345.16	ENST00000243326	hsa-miR-8083	151478307	151478313	7mer-m8	151478297	151478314	145.00	-18.05
CAediting_218173	chr2_151478324_+	ENSG00000080345.16	ENST00000243326	hsa-miR-222-5p	151478318	151478325	8mer-1a	151478304	151478325	144.00	-11.38
CAediting_218173	chr2_151478324_+	ENSG00000080345.16	ENST00000243326	hsa-miR-30a-3p	151478320	151478327	8mer-1a	151478305	151478327	145.00	-10.45
CAediting_218173	chr2_151478324_+	ENSG00000080345.16	ENST00000243326	hsa-miR-30d-3p	151478320	151478327	8mer-1a	151478301	151478327	146.00	-14.95
CAediting_218173	chr2_151478324_+	ENSG00000080345.16	ENST00000243326	hsa-miR-30e-3p	151478320	151478327	8mer-1a	151478305	151478327	145.00	-11.19
CAediting_218174	chr2_151478325_+	ENSG00000080345.16	ENST00000243326	hsa-miR-325	151478318	151478325	8mer-1a	151478305	151478325	143.00	-12.77
CAediting_218182	chr2_151478365_+	ENSG00000080345.16	ENST00000243326	hsa-miR-125b-2-3p	151478358	151478365	8mer-1a	151478345	151478365	146.00	-13.34
CAediting_218182	chr2_151478365_+	ENSG00000080345.16	ENST00000243326	hsa-miR-513b-5p	151478359	151478365	7mer-m8	151478345	151478366	161.00	-19.05
CAediting_218183	chr2_151478366_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3672	151478364	151478370	7mer-m8	151478348	151478371	153.00	-13.03
CAediting_218183	chr2_151478366_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6864-3p	151478364	151478370	7mer-m8	151478351	151478371	142.00	-9.88
CAediting_218185	chr2_151478375_+	ENSG00000080345.16	ENST00000243326	hsa-miR-646	151478370	151478376	7mer-m8	151478359	151478377	145.00	-14.10
CAediting_218187	chr2_151478388_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4433b-5p	151478385	151478391	7mer-m8	151478373	151478392	150.00	-23.79
CAediting_218187	chr2_151478388_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6834-3p	151478386	151478392	7mer-m8	151478375	151478393	158.00	-25.07
CAediting_218187	chr2_151478388_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6849-3p	151478381	151478387	7mer-m8	151478366	151478388	141.00	-14.45
CAediting_218187	chr2_151478388_+	ENSG00000080345.16	ENST00000243326	hsa-miR-7977	151478383	151478389	7mer-m8	151478373	151478390	145.00	-16.20
CAediting_218128	chr2_151477470_+	ENSG00000080345.16	ENST00000243326	hsa-miR-181c-3p	151477468	151477474	7mer-m8	151477453	151477475	147.00	-17.23
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6771-5p	151477534	151477540	7mer-m8	151477522	151477541	160.00	-34.33
CAediting_218134	chr2_151477544_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3614-5p	151477537	151477543	7mer-m8	151477521	151477544	152.00	-25.27
CAediting_218134	chr2_151477544_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4691-3p	151477541	151477547	7mer-m8	151477521	151477548	150.00	-26.36
CAediting_218135	chr2_151477556_+	ENSG00000080345.16	ENST00000243326	hsa-miR-100-5p	151477552	151477558	7mer-m8	151477536	151477559	163.00	-26.24
CAediting_218135	chr2_151477556_+	ENSG00000080345.16	ENST00000243326	hsa-miR-99a-5p	151477552	151477558	7mer-m8	151477536	151477559	162.00	-25.12
CAediting_218135	chr2_151477556_+	ENSG00000080345.16	ENST00000243326	hsa-miR-99b-5p	151477552	151477558	7mer-m8	151477536	151477559	159.00	-27.83
CAediting_218136	chr2_151477580_+	ENSG00000080345.16	ENST00000243326	hsa-miR-34a-3p	151477576	151477582	7mer-m8	151477561	151477583	147.00	-11.29
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548ae-3p	151477579	151477585	7mer-m8	151477566	151477586	141.00	-6.23
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548ae-3p	151477579	151477585	7mer-m8	151477566	151477586	141.00	-6.23
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548ah-3p	151477579	151477585	7mer-m8	151477564	151477586	143.00	-6.87
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aj-3p	151477579	151477585	7mer-m8	151477566	151477586	141.00	-7.13
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aj-3p	151477579	151477585	7mer-m8	151477566	151477586	141.00	-7.13
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548am-3p	151477579	151477585	7mer-m8	151477564	151477586	143.00	-6.23
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aq-3p	151477579	151477585	7mer-m8	151477565	151477586	141.00	-6.30
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548j-3p	151477579	151477585	7mer-m8	151477566	151477586	141.00	-6.23
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548x-3p	151477579	151477585	7mer-m8	151477567	151477586	141.00	-7.13
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548x-3p	151477579	151477585	7mer-m8	151477567	151477586	141.00	-7.13
CAediting_218137	chr2_151477581_+	ENSG00000080345.16	ENST00000243326	hsa-miR-7844-5p	151477577	151477583	7mer-m8	151477563	151477584	160.00	-17.71
CAediting_218143	chr2_151477779_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4537	151477776	151477783	8mer-1a	151477762	151477783	147.00	-23.68
CAediting_218146	chr2_151477810_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4539	151477804	151477809	6mer	151477791	151477810	141.00	-19.05
CAediting_218146	chr2_151477810_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6078	151477806	151477813	8mer-1a	151477794	151477813	148.00	-20.43
CAediting_218149	chr2_151477836_+	ENSG00000080345.16	ENST00000243326	hsa-miR-1298-3p	151477831	151477838	8mer-1a	151477818	151477838	151.00	-15.25
CAediting_218149	chr2_151477836_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4314	151477830	151477836	7mer-m8	151477819	151477837	143.00	-19.19
CAediting_218150	chr2_151477837_+	ENSG00000080345.16	ENST00000243326	hsa-miR-12126	151477831	151477838	8mer-1a	151477815	151477838	147.00	-13.23
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548ae-3p	151477874	151477880	7mer-m8	151477863	151477881	146.00	-8.96
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548ae-3p	151477874	151477880	7mer-m8	151477863	151477881	146.00	-8.96
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548ah-3p	151477874	151477880	7mer-m8	151477858	151477881	148.00	-13.26
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aj-3p	151477874	151477880	7mer-m8	151477863	151477881	146.00	-6.85
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aj-3p	151477874	151477880	7mer-m8	151477863	151477881	146.00	-6.85
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548am-3p	151477874	151477880	7mer-m8	151477858	151477881	148.00	-13.26
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aq-3p	151477874	151477880	7mer-m8	151477862	151477881	146.00	-10.01
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548j-3p	151477874	151477880	7mer-m8	151477862	151477881	146.00	-10.40
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548x-3p	151477874	151477880	7mer-m8	151477864	151477881	146.00	-6.82
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548x-3p	151477874	151477880	7mer-m8	151477864	151477881	146.00	-6.82
CAediting_218154	chr2_151477876_+	ENSG00000080345.16	ENST00000243326	hsa-miR-7844-5p	151477873	151477878	6mer	151477858	151477879	145.00	-19.69
CAediting_218155	chr2_151477884_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4801	151477879	151477884	6mer	151477862	151477885	147.00	-17.04
CAediting_218160	chr2_151477931_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4329	151477924	151477931	8mer-1a	151477910	151477931	146.00	-14.90
CAediting_218161	chr2_151477932_+	ENSG00000080345.16	ENST00000243326	hsa-miR-100-3p	151477928	151477934	7mer-m8	151477914	151477935	142.00	-11.55
CAediting_218162	chr2_151477972_+	ENSG00000080345.16	ENST00000243326	hsa-miR-1255b-2-3p	151477969	151477975	7mer-m8	151477955	151477976	145.00	-11.22
CAediting_218163	chr2_151478248_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4264	151478241	151478247	7mer-m8	151478232	151478248	157.00	-18.02
CAediting_218165	chr2_151478284_+	ENSG00000080345.16	ENST00000243326	hsa-miR-5705	151478282	151478287	6mer	151478267	151478288	147.00	-20.91
CAediting_218166	chr2_151478285_+	ENSG00000080345.16	ENST00000243326	hsa-miR-12113	151478278	151478285	8mer-1a	151478265	151478285	149.00	-23.08
CAediting_218166	chr2_151478285_+	ENSG00000080345.16	ENST00000243326	hsa-miR-148b-5p	151478282	151478288	7mer-m8	151478268	151478289	140.00	-16.58
CAediting_218166	chr2_151478285_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4277	151478283	151478290	8mer-1a	151478270	151478290	158.00	-18.84
CAediting_218166	chr2_151478285_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4539	151478278	151478285	8mer-1a	151478261	151478285	159.00	-23.24
CAediting_218166	chr2_151478285_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6874-3p	151478282	151478288	7mer-m8	151478267	151478289	152.00	-19.86
CAediting_218169	chr2_151478300_+	ENSG00000080345.16	ENST00000243326	hsa-miR-1208	151478295	151478301	7mer-m8	151478282	151478302	158.00	-21.48
CAediting_218175	chr2_151478326_+	ENSG00000080345.16	ENST00000243326	hsa-miR-630	151478324	151478331	8mer-1a	151478310	151478331	157.00	-16.62
CAediting_218178	chr2_151478333_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4742-3p	151478326	151478333	8mer-1a	151478311	151478333	142.00	-10.99
CAediting_218179	chr2_151478335_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3663-5p	151478333	151478339	7mer-m8	151478320	151478340	147.00	-18.32
CAediting_218179	chr2_151478335_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6844	151478329	151478335	7mer-m8	151478315	151478336	155.00	-6.80
CAediting_218180	chr2_151478336_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3119	151478331	151478338	8mer-1a	151478318	151478338	147.00	-11.24
CAediting_218180	chr2_151478336_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3119	151478331	151478338	8mer-1a	151478318	151478338	147.00	-11.24
CAediting_218180	chr2_151478336_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3140-3p	151478330	151478336	7mer-m8	151478317	151478337	150.00	-12.64
CAediting_218180	chr2_151478336_+	ENSG00000080345.16	ENST00000243326	hsa-miR-5580-5p	151478334	151478340	7mer-m8	151478323	151478341	147.00	-12.25
CAediting_218190	chr2_151478398_+	ENSG00000080345.16	ENST00000243326	hsa-miR-891b	151478396	151478401	6mer	151478381	151478402	142.00	-13.54
CAediting_218193	chr2_151478427_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6511a-3p	151478426	151478431	6mer	151478411	151478432	140.00	-25.97
CAediting_218193	chr2_151478427_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6511a-3p	151478426	151478431	6mer	151478411	151478432	140.00	-25.97
CAediting_218193	chr2_151478427_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6511a-3p	151478426	151478431	6mer	151478411	151478432	140.00	-25.97
CAediting_218193	chr2_151478427_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6511a-3p	151478426	151478431	6mer	151478411	151478432	140.00	-25.97
CAediting_218193	chr2_151478427_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6511b-3p	151478426	151478431	6mer	151478410	151478432	145.00	-26.90
CAediting_218193	chr2_151478427_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6511b-3p	151478426	151478431	6mer	151478410	151478432	145.00	-26.90
CAediting_218193	chr2_151478427_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6784-3p	151478426	151478431	6mer	151478410	151478432	145.00	-26.72
CAediting_218194	chr2_151478431_+	ENSG00000080345.16	ENST00000243326	hsa-miR-324-3p	151478424	151478430	7mer-m8	151478409	151478431	142.00	-23.67
CAediting_218194	chr2_151478431_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6075	151478428	151478435	8mer-1a	151478414	151478435	150.00	-25.04
CAediting_218196	chr2_151478462_+	ENSG00000080345.16	ENST00000243326	hsa-miR-769-5p	151478460	151478466	7mer-m8	151478445	151478467	149.00	-19.36
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3183	151477598	151477604	7mer-m8	151477584	151477605	140.00	-13.24
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4640-3p	151477602	151477608	7mer-m8	151477588	151477609	157.00	-19.40
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4723-3p	151477598	151477604	7mer-m8	151477585	151477605	142.00	-17.74
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6769b-3p	151477598	151477604	7mer-m8	151477585	151477605	142.00	-17.49
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6892-3p	151477599	151477605	7mer-m8	151477586	151477606	140.00	-15.45
CAediting_218141	chr2_151477627_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3620-3p	151477622	151477628	7mer-m8	151477608	151477629	149.00	-18.07

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_218186	chr2_151478379_+	ENSG00000080345.16	ENST00000243326	hsa-miR-1200	151478375	151478381	7mer-m8	151478363	151478382	146	-23.05
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-12126	151477536	151477543	8mer-1a	151477520	151477543	147	-13.23
CAediting_218191	chr2_151478407_+	ENSG00000080345.16	ENST00000243326	hsa-miR-12135	151478405	151478411	7mer-m8	151478395	151478412	142	-9.02
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-1248	151477600	151477605	6mer	151477581	151477606	140	-11.97
CAediting_218164	chr2_151478276_+	ENSG00000080345.16	ENST00000243326	hsa-miR-1343-3p	151478272	151478278	7mer-m8	151478258	151478279	142	-21.79
CAediting_218165	chr2_151478284_+	ENSG00000080345.16	ENST00000243326	hsa-miR-2052	151478281	151478287	7mer-m8	151478269	151478288	140	-5.87
CAediting_218166	chr2_151478285_+	ENSG00000080345.16	ENST00000243326	hsa-miR-2052	151478281	151478287	7mer-m8	151478269	151478288	140	-5.87
CAediting_218167	chr2_151478286_+	ENSG00000080345.16	ENST00000243326	hsa-miR-2052	151478281	151478287	7mer-m8	151478269	151478288	140	-5.87
CAediting_218168	chr2_151478287_+	ENSG00000080345.16	ENST00000243326	hsa-miR-2052	151478281	151478287	7mer-m8	151478269	151478288	140	-5.87
CAediting_218140	chr2_151477612_+	ENSG00000080345.16	ENST00000243326	hsa-miR-216a-3p	151477610	151477616	7mer-m8	151477596	151477617	150	-19.36
CAediting_218168	chr2_151478287_+	ENSG00000080345.16	ENST00000243326	hsa-miR-223-3p	151478285	151478291	7mer-m8	151478272	151478292	152	-12.28
CAediting_218128	chr2_151477470_+	ENSG00000080345.16	ENST00000243326	hsa-miR-25-3p	151477465	151477471	7mer-m8	151477449	151477472	149	-17.19
CAediting_218179	chr2_151478335_+	ENSG00000080345.16	ENST00000243326	hsa-miR-29b-1-5p	151478333	151478339	7mer-m8	151478320	151478340	145	-16.86
CAediting_218180	chr2_151478336_+	ENSG00000080345.16	ENST00000243326	hsa-miR-29b-1-5p	151478333	151478339	7mer-m8	151478320	151478340	145	-16.86
CAediting_218181	chr2_151478339_+	ENSG00000080345.16	ENST00000243326	hsa-miR-29b-1-5p	151478333	151478339	7mer-m8	151478320	151478340	145	-16.86
CAediting_218181	chr2_151478339_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3085-3p	151478337	151478343	7mer-m8	151478324	151478344	144	-14.34
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-30b-3p	151477533	151477540	8mer-1a	151477519	151477540	151	-15.38
CAediting_218148	chr2_151477835_+	ENSG00000080345.16	ENST00000243326	hsa-miR-30b-3p	151477828	151477835	8mer-1a	151477814	151477835	151	-15.38
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3127-3p	151477601	151477607	7mer-m8	151477587	151477608	145	-20.54
CAediting_218143	chr2_151477779_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3160-3p	151477776	151477783	8mer-1a	151477762	151477783	150	-16.68
CAediting_218143	chr2_151477779_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3160-3p	151477776	151477783	8mer-1a	151477762	151477783	150	-16.68
CAediting_218170	chr2_151478308_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3167	151478306	151478312	7mer-m8	151478293	151478313	150	-15.95
CAediting_218171	chr2_151478309_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3167	151478306	151478312	7mer-m8	151478293	151478313	150	-15.95
CAediting_218172	chr2_151478310_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3167	151478306	151478312	7mer-m8	151478293	151478313	150	-15.95
CAediting_218144	chr2_151477784_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3174	151477780	151477785	6mer	151477765	151477786	145	-21.96
CAediting_218195	chr2_151478456_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3194-3p	151478454	151478460	7mer-1a	151478439	151478460	148	-23.99
CAediting_218128	chr2_151477470_+	ENSG00000080345.16	ENST00000243326	hsa-miR-32-5p	151477465	151477471	7mer-m8	151477450	151477472	148	-11.9
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-320a-5p	151477599	151477605	7mer-m8	151477585	151477606	147	-13.51
CAediting_218142	chr2_151477765_+	ENSG00000080345.16	ENST00000243326	hsa-miR-324-3p	151477762	151477768	7mer-m8	151477742	151477769	149	-24.1
CAediting_218128	chr2_151477470_+	ENSG00000080345.16	ENST00000243326	hsa-miR-363-3p	151477465	151477471	7mer-m8	151477452	151477472	143	-11.3
CAediting_218140	chr2_151477612_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3681-3p	151477610	151477616	7mer-m8	151477592	151477617	153	-21.71
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3689a-3p	151477533	151477540	8mer-1a	151477520	151477540	147	-18.72
CAediting_218148	chr2_151477835_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3689a-3p	151477828	151477835	8mer-1a	151477815	151477835	147	-18.72
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3689b-3p	151477533	151477540	8mer-1a	151477520	151477540	147	-17.55
CAediting_218148	chr2_151477835_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3689b-3p	151477828	151477835	8mer-1a	151477815	151477835	147	-17.55
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3689c	151477533	151477540	8mer-1a	151477520	151477540	147	-17.55
CAediting_218148	chr2_151477835_+	ENSG00000080345.16	ENST00000243326	hsa-miR-3689c	151477828	151477835	8mer-1a	151477815	151477835	147	-17.55
CAediting_218194	chr2_151478431_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4284	151478427	151478433	7mer-m8	151478417	151478434	151	-17.62
CAediting_218130	chr2_151477494_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4327	151477490	151477496	7mer-m8	151477481	151477497	146	-20.29
CAediting_218131	chr2_151477495_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4327	151477490	151477496	7mer-m8	151477481	151477497	146	-20.29
CAediting_218166	chr2_151478285_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4328	151478283	151478290	8mer-1a	151478274	151478290	140	-7.27
CAediting_218167	chr2_151478286_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4328	151478283	151478290	8mer-1a	151478274	151478290	140	-7.27
CAediting_218168	chr2_151478287_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4328	151478283	151478290	8mer-1a	151478274	151478290	140	-7.27
CAediting_218132	chr2_151477532_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4478	151477529	151477535	7mer-m8	151477521	151477536	149	-25.05
CAediting_218147	chr2_151477827_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4478	151477824	151477830	7mer-m8	151477816	151477831	149	-25.05
CAediting_218132	chr2_151477532_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4649-3p	151477526	151477532	7mer-m8	151477513	151477533	140	-14.11
CAediting_218147	chr2_151477827_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4649-3p	151477821	151477827	7mer-m8	151477808	151477828	140	-14.11
CAediting_218138	chr2_151477599_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4684-5p	151477596	151477603	8mer-1a	151477582	151477603	151	-12.11
CAediting_218142	chr2_151477765_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4793-3p	151477759	151477765	7mer-m8	151477744	151477766	153	-21.31
CAediting_218191	chr2_151478407_+	ENSG00000080345.16	ENST00000243326	hsa-miR-498-5p	151478400	151478406	7mer-m8	151478385	151478407	142	-13.02
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-5088-3p	151477600	151477606	7mer-m8	151477586	151477607	146	-16.36
CAediting_218189	chr2_151478397_+	ENSG00000080345.16	ENST00000243326	hsa-miR-5571-5p	151478393	151478399	7mer-m8	151478378	151478400	150	-25.57
CAediting_218190	chr2_151478398_+	ENSG00000080345.16	ENST00000243326	hsa-miR-5571-5p	151478393	151478399	7mer-m8	151478378	151478400	150	-25.57
CAediting_218134	chr2_151477544_+	ENSG00000080345.16	ENST00000243326	hsa-miR-5690	151477541	151477547	7mer-m8	151477528	151477548	145	-16.74
CAediting_218195	chr2_151478456_+	ENSG00000080345.16	ENST00000243326	hsa-miR-5691	151478454	151478461	8mer-1a	151478440	151478461	140	-15.72
CAediting_218181	chr2_151478339_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6504-5p	151478337	151478343	7mer-m8	151478322	151478344	148	-16.75
CAediting_218130	chr2_151477494_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6516-5p	151477488	151477494	7mer-m8	151477473	151477495	152	-16.1
CAediting_218131	chr2_151477495_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6516-5p	151477488	151477494	7mer-m8	151477473	151477495	152	-16.1
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6756-3p	151477601	151477607	7mer-m8	151477589	151477608	143	-16.61
CAediting_218132	chr2_151477532_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6765-5p	151477526	151477531	6mer	151477511	151477532	155	-28.68
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6779-5p	151477533	151477540	8mer-1a	151477522	151477540	148	-22.58
CAediting_218148	chr2_151477835_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6779-5p	151477828	151477835	8mer-1a	151477817	151477835	148	-22.58
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6780a-5p	151477533	151477540	8mer-1a	151477517	151477540	152	-25.37
CAediting_218148	chr2_151477835_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6780a-5p	151477828	151477835	8mer-1a	151477812	151477835	152	-25.37
CAediting_218164	chr2_151478276_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6783-3p	151478272	151478278	7mer-m8	151478258	151478279	146	-19.65
CAediting_218170	chr2_151478308_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6788-3p	151478301	151478308	8mer-1a	151478287	151478308	143	-17.1
CAediting_218135	chr2_151477556_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6804-3p	151477554	151477560	7mer-m8	151477539	151477561	155	-18.29
CAediting_218195	chr2_151478456_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6805-3p	151478454	151478461	8mer-1a	151478440	151478461	146	-16.54
CAediting_218181	chr2_151478339_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6842-3p	151478336	151478342	7mer-m8	151478322	151478343	154	-19.37
CAediting_218185	chr2_151478375_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6869-5p	151478372	151478378	7mer-m8	151478358	151478379	145	-13.03
CAediting_218186	chr2_151478379_+	ENSG00000080345.16	ENST00000243326	hsa-miR-6869-5p	151478372	151478378	7mer-m8	151478358	151478379	145	-13.03
CAediting_218132	chr2_151477532_+	ENSG00000080345.16	ENST00000243326	hsa-miR-7160-5p	151477527	151477533	7mer-m8	151477515	151477534	149	-18.69
CAediting_218147	chr2_151477827_+	ENSG00000080345.16	ENST00000243326	hsa-miR-7160-5p	151477822	151477828	7mer-m8	151477809	151477829	146	-20.4
CAediting_218128	chr2_151477470_+	ENSG00000080345.16	ENST00000243326	hsa-miR-7703	151477463	151477470	8mer-1a	151477448	151477470	154	-20.15
CAediting_218158	chr2_151477907_+	ENSG00000080345.16	ENST00000243326	hsa-miR-7855-5p	151477904	151477909	6mer	151477889	151477910	143	-20.33
CAediting_218170	chr2_151478308_+	ENSG00000080345.16	ENST00000243326	hsa-miR-876-5p	151478306	151478312	7mer-m8	151478292	151478313	142	-9.83
CAediting_218171	chr2_151478309_+	ENSG00000080345.16	ENST00000243326	hsa-miR-876-5p	151478306	151478312	7mer-m8	151478292	151478313	142	-9.83
CAediting_218172	chr2_151478310_+	ENSG00000080345.16	ENST00000243326	hsa-miR-876-5p	151478306	151478312	7mer-m8	151478292	151478313	142	-9.83
CAediting_218133	chr2_151477540_+	ENSG00000080345.16	ENST00000243326	hsa-miR-887-5p	151477534	151477540	7mer-m8	151477522	151477541	143	-19.73
CAediting_218148	chr2_151477835_+	ENSG00000080345.16	ENST00000243326	hsa-miR-887-5p	151477829	151477836	8mer-1a	151477817	151477836	143	-15.14
CAediting_218149	chr2_151477836_+	ENSG00000080345.16	ENST00000243326	hsa-miR-887-5p	151477829	151477836	8mer-1a	151477817	151477836	143	-15.14
CAediting_218128	chr2_151477470_+	ENSG00000080345.16	ENST00000243326	hsa-miR-92a-3p	151477465	151477471	7mer-m8	151477455	151477472	147	-18.38
CAediting_218128	chr2_151477470_+	ENSG00000080345.16	ENST00000243326	hsa-miR-92a-3p	151477465	151477471	7mer-m8	151477455	151477472	147	-18.38
CAediting_218128	chr2_151477470_+	ENSG00000080345.16	ENST00000243326	hsa-miR-92b-3p	151477465	151477471	7mer-m8	151477451	151477472	150	-18.38
CAediting_218164	chr2_151478276_+	ENSG00000080345.16	ENST00000243326	hsa-miR-939-3p	151478271	151478278	8mer-1a	151478256	151478278	150	-26.1
CAediting_218139	chr2_151477604_+	ENSG00000080345.16	ENST00000243326	hsa-miR-942-5p	151477598	151477604	7mer-m8	151477584	151477605	148	-15.56
CAediting_218197	chr2_151478479_+	ENSG00000080345.16	ENST00000243326	hsa-miR-9983-3p	151478473	151478480	8mer-1a	151478455	151478480	150	-12.78
CAediting_218198	chr2_151478480_+	ENSG00000080345.16	ENST00000243326	hsa-miR-9983-3p	151478473	151478480	8mer-1a	151478455	151478480	150	-12.78

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151479878	151479883	6mer	151479861	151479884	144	-16.27
CAediting_1229414	chr17_67471546_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151477627	151477633	7mer-m8	151477610	151477634	146	-12.69
CAediting_1229414	chr17_67471546_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151481240	151481246	7mer-m8	151481223	151481247	153	-18.24
CAediting_1160181	chr17_7017644_-	ENSG00000080345.16	ENST00000243326	hsa-miR-195-3p	151478500	151478506	7mer-m8	151478486	151478507	146	-10.59
CAediting_228905	chr2_188297554_+	ENSG00000080345.16	ENST00000243326	hsa-miR-561-3p	151481381	151481387	7mer-m8	151481367	151481388	155	-14.09
CAediting_442554	chr5_154685830_+	ENSG00000080345.16	ENST00000243326	hsa-miR-1303	151480105	151480112	8mer-1a	151480089	151480112	155	-18.98
CAediting_524911	chr7_5495852_-	ENSG00000080345.16	ENST00000243326	hsa-miR-589-3p	151477444	151477450	7mer-m8	151477429	151477451	154	-15.27
CAediting_1229415	chr17_67471547_+	ENSG00000080345.16	ENST00000454583	hsa-miR-548aa	151506336	151506342	7mer-m8	151506316	151506343	142	-13.7
CAediting_573001	chr7_92204086_-	ENSG00000080345.16	ENST00000454583	hsa-miR-1285-5p	151506233	151506240	8mer-1a	151506220	151506240	141	-16.32

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000080345.16	ENST00000243326	hsa-miR-1303	151479456	151479463	8mer-1a	151479441	151479463	155	-14.45
CAediting_1160181	chr17_7017644_-	ENSG00000080345.16	ENST00000243326	hsa-miR-195-3p	151481541	151481547	7mer-m8	151481527	151481548	146	-8.53
CAediting_86358	chr1_109598906_+	ENSG00000080345.16	ENST00000243326	hsa-miR-197-5p	151481883	151481889	7mer-m8	151481865	151481890	147	-24.11
CAediting_688080	chr9_63819626_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4477b	151476153	151476159	7mer-m8	151476135	151476160	147	-10.3
CAediting_688081	chr9_63819627_+	ENSG00000080345.16	ENST00000243326	hsa-miR-4477b	151476153	151476159	7mer-m8	151476135	151476160	147	-10.3
CAediting_1229413	chr17_67471544_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151476652	151476658	7mer-m8	151476634	151476659	145	-7.96
CAediting_1229414	chr17_67471546_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151476652	151476658	7mer-m8	151476634	151476659	145	-7.96
CAediting_1229415	chr17_67471547_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151476652	151476658	7mer-m8	151476634	151476659	145	-7.96
CAediting_1229413	chr17_67471544_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151475293	151475299	7mer-m8	151475276	151475300	146	-14
CAediting_1229414	chr17_67471546_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151475293	151475299	7mer-m8	151475276	151475300	146	-14
CAediting_1229415	chr17_67471547_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151475293	151475299	7mer-m8	151475276	151475300	146	-14
CAediting_1229413	chr17_67471544_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151479229	151479235	7mer-m8	151479213	151479236	144	-12.53
CAediting_1229414	chr17_67471546_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151479229	151479235	7mer-m8	151479213	151479236	144	-12.53
CAediting_1229415	chr17_67471547_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151479229	151479235	7mer-m8	151479213	151479236	144	-12.53
CAediting_1229413	chr17_67471544_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151480933	151480939	7mer-m8	151480917	151480940	148	-9.96
CAediting_1229414	chr17_67471546_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151480933	151480939	7mer-m8	151480917	151480940	148	-9.96
CAediting_1229415	chr17_67471547_+	ENSG00000080345.16	ENST00000243326	hsa-miR-548aa	151480933	151480939	7mer-m8	151480917	151480940	148	-9.96
CAediting_228905	chr2_188297554_+	ENSG00000080345.16	ENST00000243326	hsa-miR-561-3p	151482057	151482063	7mer-m8	151482046	151482064	144	-4.75
CAediting_980496	chr14_31014685_-	ENSG00000080345.16	ENST00000243326	hsa-miR-624-3p	151478950	151478957	8mer-1a	151478937	151478957	153	-11.32

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RIF1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000243326.8	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_218128	ENST00000243326.8	chr2_151477470_+	-3976.40	-3976.70	-4030.80
CAediting_218129	ENST00000243326.8	chr2_151477479_+	-3976.10	-3976.70	-4030.80
CAediting_218130	ENST00000243326.8	chr2_151477494_+	-3976.40	-3976.70	-4030.80
CAediting_218131	ENST00000243326.8	chr2_151477495_+	-3976.40	-3976.70	-4030.80
CAediting_218132	ENST00000243326.8	chr2_151477532_+	-3976.00	-3976.70	-4030.80
CAediting_218133	ENST00000243326.8	chr2_151477540_+	-3980.10	-3976.70	-4030.80
CAediting_218134	ENST00000243326.8	chr2_151477544_+	-3976.40	-3976.70	-4030.80
CAediting_218135	ENST00000243326.8	chr2_151477556_+	-3975.90	-3976.70	-4030.80
CAediting_218136	ENST00000243326.8	chr2_151477580_+	-3980.00	-3976.70	-4030.80
CAediting_218137	ENST00000243326.8	chr2_151477581_+	-3977.60	-3976.70	-4030.80
CAediting_218138	ENST00000243326.8	chr2_151477599_+	-3978.00	-3976.70	-4030.80
CAediting_218139	ENST00000243326.8	chr2_151477604_+	-3979.10	-3976.70	-4030.80
CAediting_218140	ENST00000243326.8	chr2_151477612_+	-3976.80	-3976.70	-4030.80
CAediting_218141	ENST00000243326.8	chr2_151477627_+	-3978.60	-3976.70	-4030.80
CAediting_218142	ENST00000243326.8	chr2_151477765_+	-3976.00	-3976.70	-4030.80
CAediting_218143	ENST00000243326.8	chr2_151477779_+	-3979.40	-3976.70	-4030.80
CAediting_218144	ENST00000243326.8	chr2_151477784_+	-3976.30	-3976.70	-4030.80
CAediting_218145	ENST00000243326.8	chr2_151477809_+	-3976.40	-3976.70	-4030.80
CAediting_218146	ENST00000243326.8	chr2_151477810_+	-3979.10	-3976.70	-4030.80
CAediting_218147	ENST00000243326.8	chr2_151477827_+	-3976.20	-3976.70	-4030.80
CAediting_218148	ENST00000243326.8	chr2_151477835_+	-3976.00	-3976.70	-4030.80
CAediting_218149	ENST00000243326.8	chr2_151477836_+	-3979.40	-3976.70	-4030.80
CAediting_218150	ENST00000243326.8	chr2_151477837_+	-3977.00	-3976.70	-4030.80
CAediting_218151	ENST00000243326.8	chr2_151477839_+	-3978.90	-3976.70	-4030.80
CAediting_218152	ENST00000243326.8	chr2_151477849_+	-3977.10	-3976.70	-4030.80
CAediting_218153	ENST00000243326.8	chr2_151477875_+	-3978.40	-3976.70	-4030.80
CAediting_218154	ENST00000243326.8	chr2_151477876_+	-3979.80	-3976.70	-4030.80
CAediting_218155	ENST00000243326.8	chr2_151477884_+	-3976.70	-3976.70	-4030.80
CAediting_218156	ENST00000243326.8	chr2_151477890_+	-3976.40	-3976.70	-4030.80
CAediting_218157	ENST00000243326.8	chr2_151477893_+	-3976.40	-3976.70	-4030.80
CAediting_218158	ENST00000243326.8	chr2_151477907_+	-3982.10	-3976.70	-4030.80
CAediting_218159	ENST00000243326.8	chr2_151477930_+	-3980.10	-3976.70	-4030.80
CAediting_218160	ENST00000243326.8	chr2_151477931_+	-3977.10	-3976.70	-4030.80
CAediting_218161	ENST00000243326.8	chr2_151477932_+	-3976.70	-3976.70	-4030.80
CAediting_218162	ENST00000243326.8	chr2_151477972_+	-3980.60	-3976.70	-4030.80
CAediting_218163	ENST00000243326.8	chr2_151478248_+	-3978.50	-3976.70	-4030.80
CAediting_218164	ENST00000243326.8	chr2_151478276_+	-3976.00	-3976.70	-4030.80
CAediting_218165	ENST00000243326.8	chr2_151478284_+	-3979.70	-3976.70	-4030.80
CAediting_218166	ENST00000243326.8	chr2_151478285_+	-3977.40	-3976.70	-4030.80
CAediting_218167	ENST00000243326.8	chr2_151478286_+	-3983.00	-3976.70	-4030.80
CAediting_218168	ENST00000243326.8	chr2_151478287_+	-3977.00	-3976.70	-4030.80
CAediting_218169	ENST00000243326.8	chr2_151478300_+	-3975.20	-3976.70	-4030.80
CAediting_218170	ENST00000243326.8	chr2_151478308_+	-3976.20	-3976.70	-4030.80
CAediting_218171	ENST00000243326.8	chr2_151478309_+	-3976.80	-3976.70	-4030.80
CAediting_218172	ENST00000243326.8	chr2_151478310_+	-3973.70	-3976.70	-4030.80
CAediting_218173	ENST00000243326.8	chr2_151478324_+	-3976.80	-3976.70	-4030.80
CAediting_218174	ENST00000243326.8	chr2_151478325_+	-3976.80	-3976.70	-4030.80
CAediting_218175	ENST00000243326.8	chr2_151478326_+	-3976.80	-3976.70	-4030.80
CAediting_218176	ENST00000243326.8	chr2_151478327_+	-3976.80	-3976.70	-4030.80
CAediting_218177	ENST00000243326.8	chr2_151478332_+	-3976.40	-3976.70	-4030.80
CAediting_218178	ENST00000243326.8	chr2_151478333_+	-3976.80	-3976.70	-4030.80
CAediting_218179	ENST00000243326.8	chr2_151478335_+	-3976.80	-3976.70	-4030.80
CAediting_218180	ENST00000243326.8	chr2_151478336_+	-3976.40	-3976.70	-4030.80
CAediting_218181	ENST00000243326.8	chr2_151478339_+	-3976.70	-3976.70	-4030.80
CAediting_218182	ENST00000243326.8	chr2_151478365_+	-3976.40	-3976.70	-4030.80
CAediting_218183	ENST00000243326.8	chr2_151478366_+	-3982.90	-3976.70	-4030.80
CAediting_218184	ENST00000243326.8	chr2_151478371_+	-3976.00	-3976.70	-4030.80
CAediting_218185	ENST00000243326.8	chr2_151478375_+	-3976.70	-3976.70	-4030.80
CAediting_218186	ENST00000243326.8	chr2_151478379_+	-3980.30	-3976.70	-4030.80
CAediting_218187	ENST00000243326.8	chr2_151478388_+	-3975.80	-3976.70	-4030.80
CAediting_218188	ENST00000243326.8	chr2_151478390_+	-3983.90	-3976.70	-4030.80
CAediting_218189	ENST00000243326.8	chr2_151478397_+	-3976.20	-3976.70	-4030.80
CAediting_218190	ENST00000243326.8	chr2_151478398_+	-3976.70	-3976.70	-4030.80
CAediting_218191	ENST00000243326.8	chr2_151478407_+	-3976.70	-3976.70	-4030.80
CAediting_218192	ENST00000243326.8	chr2_151478414_+	-3976.70	-3976.70	-4030.80
CAediting_218193	ENST00000243326.8	chr2_151478427_+	-3976.00	-3976.70	-4030.80
CAediting_218194	ENST00000243326.8	chr2_151478431_+	-3975.70	-3976.70	-4030.80
CAediting_218195	ENST00000243326.8	chr2_151478456_+	-3976.00	-3976.70	-4030.80
CAediting_218196	ENST00000243326.8	chr2_151478462_+	-3976.40	-3976.70	-4030.80
CAediting_218197	ENST00000243326.8	chr2_151478479_+	-3977.10	-3976.70	-4030.80
CAediting_218198	ENST00000243326.8	chr2_151478480_+	-3976.90	-3976.70	-4030.80
CAediting_218199	ENST00000243326.8	chr2_151478481_+	-3976.80	-3976.70	-4030.80
CAediting_218200	ENST00000243326.8	chr2_151478483_+	-3976.80	-3976.70	-4030.80
CAediting_218201	ENST00000243326.8	chr2_151478484_+	-3976.80	-3976.70	-4030.80
CAediting_218202	ENST00000243326.8	chr2_151478485_+	-3976.90	-3976.70	-4030.80
CAediting_218203	ENST00000243326.8	chr2_151481763_+	-3976.40	-3976.70	-4030.80

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Relation with ADAR for RIF1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_218131	chr2_151477495_+	.	.	0.00141606083514351	0.300646447401068	.	.
ESCA	CAediting_218131	chr2_151477495_+	0.016051083184351	0.29761803387392	.	.	.	.
LGG	CAediting_218142	chr2_151477765_+	.	.	0.0465917709521011	0.20363681770492	.	.
BRCA	CAediting_218142	chr2_151477765_+	0.00814253754639019	0.288615706318716	.	.	.	.
BRCA	CAediting_218153	chr2_151477875_+	6.0798353473792e-11	0.453884731217574	.	.	.	.
SKCM	CAediting_218153	chr2_151477875_+	3.36360316441266e-08	0.658952432369595	.	.	.	.
LGG	CAediting_218158	chr2_151477907_+	.	.	6.54526528707063e-05	0.357566978997616	0.00305165447301438	0.269375418304216
BRCA	CAediting_218170	chr2_151478308_+	0.0161712780550304	0.242419189272656	.	.	.	.
BRCA	CAediting_218171	chr2_151478309_+	0.000517503983988633	0.209503708701391	.	.	.	.
HNSC	CAediting_218171	chr2_151478309_+	.	.	0.0485617713434564	0.231701339300785	.	.
TGCT	CAediting_218171	chr2_151478309_+	0.00175302751982484	0.398865733296318	.	.	.	.
BRCA	CAediting_218173	chr2_151478324_+	0.0202618697284231	0.241733121566865	.	.	.	.
BRCA	CAediting_218181	chr2_151478339_+	1.44849917566148e-05	0.489916198576898	.	.	.	.
LGG	CAediting_218182	chr2_151478365_+	.	.	0.0028354888320552	0.398560051995379	.	.
BRCA	CAediting_218182	chr2_151478365_+	0.00300481379690617	0.325715498858463	.	.	.	.
STAD	CAediting_218182	chr2_151478365_+	0.0234477863371823	0.188130602170709	.	.	.	.
BRCA	CAediting_218183	chr2_151478366_+	0.0115221684614269	0.274455446197152	.	.	.	.
LGG	CAediting_218185	chr2_151478375_+	.	.	0.026356115351014	0.261738076918143	.	.
BRCA	CAediting_218185	chr2_151478375_+	0.007488214025865	0.304490330185235	.	.	.	.
KIRC	CAediting_218185	chr2_151478375_+	.	.	.	.	0.0446847581006597	0.258015597743613
BRCA	CAediting_218186	chr2_151478379_+	0.000571682719205589	0.315059180515615	.	.	.	.
STAD	CAediting_218186	chr2_151478379_+	0.0270927105100583	0.170541154232125	.	.	.	.
KIRC	CAediting_218186	chr2_151478379_+	0.0122760464595338	0.278781104936032	.	.	.	.
SKCM	CAediting_218186	chr2_151478379_+	0.000995491558749822	0.37257749459075	.	.	.	.

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Relation with cancer stages for RIF1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_218131	chr2_151477495_+	0.0322787114317939	0.187192276634767
BRCA	pathologic_stage	CAediting_218185	chr2_151478375_+	0.0108544862463494	0.294537283885483
KIRC	pathologic_stage	CAediting_218192	chr2_151478414_+	0.0415048252449904	0.224291266862638
STAD	pathologic_stage	CAediting_218134	chr2_151477544_+	0.0385668289262618	0.290606893533746

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Relation with survival for RIF1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LGG	CAediting_218183	chr2_151478366_+	0.0171954154911249	0.0131347	186.191
STAD	CAediting_218064	chr2_151420638_+	0.0206302444777486	0.0172316	0.0184392

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RelatedDrugs for RIF1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for RIF1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene