Home

Download

Statistics

Examples

Help

Contact

Editing gene: BSDC1 (CAeditome ID:55108)

Gene summary for BSDC1

Gene summary

Gene information	Gene symbol	BSDC1
	Gene ID	55108
	Gene name	BSD domain containing 1
	Synonyms	-
	Cytomap	1p35.1
	Type of gene	protein-coding
	Description	BSD domain-containing protein 1
	Modification date	20210518
	UniProtAcc	Q9NW68
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

Top

RNA A-to-I events for BSDC1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000160058.17

RNA A-to-I editing events in Cancer.

CAediting_39726(32367027, -), CAediting_39727(32367039, -), CAediting_39728(32367045, -), CAediting_39729(32367062, -), CAediting_39730(32367064, -), CAediting_39731(32367079, -), CAediting_39732(32367082, -), CAediting_39733(32367083, -), CAediting_39734(32367923, -), CAediting_39735(32367933, -), CAediting_39736(32367938, -), CAediting_39737(32367939, -), CAediting_39738(32367940, -), CAediting_39739(32367941, -), CAediting_39740(32367943, -), CAediting_39741(32367945, -), CAediting_39742(32367957, -), CAediting_39743(32367959, -), CAediting_39744(32367964, -), CAediting_39745(32367971, -), CAediting_39746(32367978, -), CAediting_39747(32368759, -), CAediting_39748(32368761, -), CAediting_39749(32368775, -), CAediting_39750(32368787, -), CAediting_39751(32368795, -), CAediting_39752(32368796, -), CAediting_39753(32368804, -), CAediting_39754(32368807, -), CAediting_39755(32368810, -), CAediting_39756(32368814, -), CAediting_39757(32368876, -), CAediting_39758(32368882, -), CAediting_39759(32368932, -), CAediting_39760(32368978, -), CAediting_39761(32368980, -), CAediting_39762(32369334, -), CAediting_39763(32369351, -), CAediting_39764(32369352, -), CAediting_39765(32369409, -), CAediting_39766(32369414, -), CAediting_39767(32369447, -), CAediting_39768(32369457, -), CAediting_39769(32369462, -), CAediting_39770(32369465, -), CAediting_39771(32369822, -), CAediting_39772(32369917, -), CAediting_39773(32369930, -), CAediting_39774(32369972, -), CAediting_39775(32370074, -), CAediting_39776(32370080, -), CAediting_39777(32370173, -), CAediting_39778(32370177, -), CAediting_39779(32370179, -), CAediting_39780(32370251, -), CAediting_39781(32370979, -), CAediting_39782(32371475, -), CAediting_39783(32371478, -), CAediting_39784(32371547, -), CAediting_39785(32371565, -), CAediting_39786(32373659, -), CAediting_39787(32373685, -), CAediting_39788(32373690, -), CAediting_39789(32373741, -), CAediting_39790(32373802, -), CAediting_39791(32373812, -), CAediting_39792(32375003, -), CAediting_39793(32379693, -), CAediting_39794(32379729, -), CAediting_39795(32379764, -), CAediting_39796(32380474, -), CAediting_39797(32380560, -), CAediting_39798(32380632, -), CAediting_39799(32388990, -), CAediting_39800(32389027, -), CAediting_39801(32389051, -), CAediting_39802(32389066, -), CAediting_39803(32389093, -), CAediting_39804(32389119, -), CAediting_39805(32389735, -), CAediting_39806(32389736, -), CAediting_39807(32389750, -), CAediting_39808(32389878, -), CAediting_39809(32392249, -),

Top

RNA editing positional annotations for BSDC1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_39726	chr1_32367027_-	UTR3
CAediting_39727	chr1_32367039_-	UTR3
CAediting_39728	chr1_32367045_-	UTR3
CAediting_39729	chr1_32367062_-	UTR3
CAediting_39730	chr1_32367064_-	UTR3
CAediting_39731	chr1_32367079_-	UTR3
CAediting_39732	chr1_32367082_-	UTR3
CAediting_39733	chr1_32367083_-	UTR3
CAediting_39734	chr1_32367923_-	UTR3
CAediting_39735	chr1_32367933_-	UTR3
CAediting_39736	chr1_32367938_-	UTR3
CAediting_39737	chr1_32367939_-	UTR3
CAediting_39738	chr1_32367940_-	UTR3
CAediting_39739	chr1_32367941_-	UTR3
CAediting_39740	chr1_32367943_-	UTR3
CAediting_39741	chr1_32367945_-	UTR3
CAediting_39742	chr1_32367957_-	UTR3
CAediting_39743	chr1_32367959_-	UTR3
CAediting_39744	chr1_32367964_-	UTR3
CAediting_39745	chr1_32367971_-	UTR3
CAediting_39746	chr1_32367978_-	UTR3
CAediting_39747	chr1_32368759_-	ncRNA_intronic
CAediting_39748	chr1_32368761_-	ncRNA_intronic
CAediting_39749	chr1_32368775_-	ncRNA_intronic
CAediting_39750	chr1_32368787_-	ncRNA_intronic
CAediting_39751	chr1_32368795_-	ncRNA_intronic
CAediting_39752	chr1_32368796_-	ncRNA_intronic
CAediting_39753	chr1_32368804_-	ncRNA_intronic
CAediting_39754	chr1_32368807_-	ncRNA_intronic
CAediting_39755	chr1_32368810_-	ncRNA_intronic
CAediting_39756	chr1_32368814_-	ncRNA_intronic
CAediting_39757	chr1_32368876_-	ncRNA_intronic
CAediting_39758	chr1_32368882_-	ncRNA_intronic
CAediting_39759	chr1_32368932_-	ncRNA_intronic
CAediting_39760	chr1_32368978_-	ncRNA_intronic
CAediting_39761	chr1_32368980_-	ncRNA_intronic
CAediting_39762	chr1_32369334_-	exonic
CAediting_39763	chr1_32369351_-	ncRNA_intronic
CAediting_39764	chr1_32369352_-	ncRNA_intronic
CAediting_39765	chr1_32369409_-	ncRNA_intronic
CAediting_39766	chr1_32369414_-	ncRNA_intronic
CAediting_39767	chr1_32369447_-	ncRNA_intronic
CAediting_39768	chr1_32369457_-	ncRNA_intronic
CAediting_39769	chr1_32369462_-	ncRNA_intronic
CAediting_39770	chr1_32369465_-	ncRNA_intronic
CAediting_39771	chr1_32369822_-	ncRNA_intronic
CAediting_39772	chr1_32369917_-	ncRNA_intronic
CAediting_39773	chr1_32369930_-	ncRNA_intronic
CAediting_39774	chr1_32369972_-	ncRNA_intronic
CAediting_39775	chr1_32370074_-	ncRNA_intronic
CAediting_39776	chr1_32370080_-	ncRNA_intronic
CAediting_39777	chr1_32370173_-	ncRNA_intronic
CAediting_39778	chr1_32370177_-	ncRNA_intronic
CAediting_39779	chr1_32370179_-	ncRNA_intronic
CAediting_39780	chr1_32370251_-	ncRNA_intronic
CAediting_39781	chr1_32370979_-	ncRNA_intronic
CAediting_39782	chr1_32371475_-	ncRNA_intronic
CAediting_39783	chr1_32371478_-	ncRNA_intronic
CAediting_39784	chr1_32371547_-	ncRNA_intronic
CAediting_39785	chr1_32371565_-	ncRNA_intronic
CAediting_39786	chr1_32373659_-	ncRNA_intronic
CAediting_39787	chr1_32373685_-	ncRNA_intronic
CAediting_39788	chr1_32373690_-	ncRNA_intronic
CAediting_39789	chr1_32373741_-	ncRNA_intronic
CAediting_39790	chr1_32373802_-	ncRNA_intronic
CAediting_39791	chr1_32373812_-	ncRNA_intronic
CAediting_39792	chr1_32375003_-	intronic
CAediting_39793	chr1_32379693_-	ncRNA_intronic
CAediting_39794	chr1_32379729_-	ncRNA_intronic
CAediting_39795	chr1_32379764_-	ncRNA_intronic
CAediting_39796	chr1_32380474_-	ncRNA_intronic
CAediting_39797	chr1_32380560_-	ncRNA_intronic
CAediting_39798	chr1_32380632_-	ncRNA_intronic
CAediting_39799	chr1_32388990_-	ncRNA_intronic
CAediting_39800	chr1_32389027_-	ncRNA_intronic
CAediting_39801	chr1_32389051_-	ncRNA_intronic
CAediting_39802	chr1_32389066_-	ncRNA_intronic
CAediting_39803	chr1_32389093_-	ncRNA_intronic
CAediting_39804	chr1_32389119_-	ncRNA_intronic
CAediting_39805	chr1_32389735_-	ncRNA_intronic
CAediting_39806	chr1_32389736_-	ncRNA_intronic
CAediting_39807	chr1_32389750_-	ncRNA_intronic
CAediting_39808	chr1_32389878_-	ncRNA_intronic
CAediting_39809	chr1_32392249_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_39747	chr1_32368759_-	SINE	Alu	AluSz
CAediting_39748	chr1_32368761_-	SINE	Alu	AluSz
CAediting_39749	chr1_32368775_-	SINE	Alu	AluSz
CAediting_39750	chr1_32368787_-	SINE	Alu	AluSz
CAediting_39751	chr1_32368795_-	SINE	Alu	AluSz
CAediting_39752	chr1_32368796_-	SINE	Alu	AluSz
CAediting_39753	chr1_32368804_-	SINE	Alu	AluSz
CAediting_39754	chr1_32368807_-	SINE	Alu	AluSz
CAediting_39755	chr1_32368810_-	SINE	Alu	AluSz
CAediting_39756	chr1_32368814_-	SINE	Alu	AluSz
CAediting_39757	chr1_32368876_-	SINE	Alu	AluSz
CAediting_39758	chr1_32368882_-	SINE	Alu	AluSz
CAediting_39759	chr1_32368932_-	SINE	Alu	AluSz
CAediting_39760	chr1_32368978_-	SINE	Alu	AluSz
CAediting_39761	chr1_32368980_-	SINE	Alu	AluSz
CAediting_39762	chr1_32369334_-	SINE	Alu	AluJr
CAediting_39763	chr1_32369351_-	SINE	Alu	AluJr
CAediting_39764	chr1_32369352_-	SINE	Alu	AluJr
CAediting_39765	chr1_32369409_-	SINE	Alu	AluJr
CAediting_39766	chr1_32369414_-	SINE	Alu	AluJr
CAediting_39767	chr1_32369447_-	SINE	Alu	AluJr
CAediting_39768	chr1_32369457_-	SINE	Alu	AluJr
CAediting_39769	chr1_32369462_-	SINE	Alu	AluJr
CAediting_39770	chr1_32369465_-	SINE	Alu	AluJr
CAediting_39771	chr1_32369822_-	SINE	Alu	AluSx1
CAediting_39772	chr1_32369917_-	SINE	Alu	AluSx1
CAediting_39773	chr1_32369930_-	SINE	Alu	AluSx1
CAediting_39774	chr1_32369972_-	SINE	Alu	AluSx
CAediting_39775	chr1_32370074_-	SINE	Alu	AluSx
CAediting_39776	chr1_32370080_-	SINE	Alu	AluSx
CAediting_39777	chr1_32370173_-	SINE	Alu	AluSx
CAediting_39778	chr1_32370177_-	SINE	Alu	AluSx
CAediting_39779	chr1_32370179_-	SINE	Alu	AluSx
CAediting_39780	chr1_32370251_-	SINE	Alu	AluSx
CAediting_39781	chr1_32370979_-	DNA	hAT-Charlie	MER58A
CAediting_39782	chr1_32371475_-	SINE	Alu	AluY
CAediting_39783	chr1_32371478_-	SINE	Alu	AluY
CAediting_39784	chr1_32371547_-	SINE	Alu	AluY
CAediting_39785	chr1_32371565_-	SINE	Alu	AluY
CAediting_39786	chr1_32373659_-	SINE	Alu	AluJb
CAediting_39787	chr1_32373685_-	SINE	Alu	AluJb
CAediting_39788	chr1_32373690_-	SINE	Alu	AluJb
CAediting_39789	chr1_32373741_-	SINE	Alu	AluJb
CAediting_39790	chr1_32373802_-	SINE	Alu	AluJb
CAediting_39791	chr1_32373812_-	SINE	Alu	AluJb
CAediting_39792	chr1_32375003_-	SINE	Alu	AluY
CAediting_39793	chr1_32379693_-	SINE	Alu	AluJo
CAediting_39794	chr1_32379729_-	SINE	Alu	AluJo
CAediting_39795	chr1_32379764_-	SINE	Alu	AluJo
CAediting_39796	chr1_32380474_-	SINE	Alu	AluSx1
CAediting_39797	chr1_32380560_-	SINE	Alu	AluSx1
CAediting_39798	chr1_32380632_-	SINE	Alu	AluSx1
CAediting_39799	chr1_32388990_-	SINE	Alu	AluY
CAediting_39800	chr1_32389027_-	SINE	Alu	AluY
CAediting_39801	chr1_32389051_-	SINE	Alu	AluY
CAediting_39802	chr1_32389066_-	SINE	Alu	AluY
CAediting_39803	chr1_32389093_-	SINE	Alu	AluY
CAediting_39804	chr1_32389119_-	SINE	Alu	AluY
CAediting_39805	chr1_32389735_-	SINE	Alu	AluJb
CAediting_39806	chr1_32389736_-	SINE	Alu	AluJb
CAediting_39807	chr1_32389750_-	SINE	Alu	AluJb
CAediting_39808	chr1_32389878_-	SINE	Alu	AluJb
CAediting_39809	chr1_32392249_-	SINE	Alu	AluSx

Top

RNA A-to-I editing events in the alternative splicing sites for BSDC1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_39763	chr1_32369351_-	32369336:32369358	3SS	0+13i	ATTTTTAAATTTTTTTCTAGAGA	7.57	ATTTTTAGATTTTTTTCTAGAGA	4.27
ES	CAediting_39764	chr1_32369352_-	32369336:32369358	3SS	0+14i	ATTTTTAAATTTTTTTCTAGAGA	7.57	ATTTTTGAATTTTTTTCTAGAGA	7.22

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000160058.17.BSDC1.

Correlation between RNA A-to-I editing and PSI for ENSG00000160058.17.BSDC1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for BSDC1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for BSDC1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for BSDC1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_39726	chr1_32367027_-	ENSG00000160058.17	ENST00000341071	hsa-miR-1538	32367023	32367028	6mer	32367022	32367044	149.00	-26.72
CAediting_39726	chr1_32367027_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4747-3p	32367022	32367028	7mer-m8	32367021	32367042	151.00	-21.48
CAediting_39731	chr1_32367079_-	ENSG00000160058.17	ENST00000341071	hsa-miR-224-5p	32367074	32367080	7mer-m8	32367073	32367098	164.00	-17.26
CAediting_39738	chr1_32367940_-	ENSG00000160058.17	ENST00000341071	hsa-miR-3182	32367936	32367943	8mer-1a	32367936	32367952	140.00	-10.92
CAediting_39738	chr1_32367940_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4743-3p	32367938	32367944	7mer-m8	32367937	32367956	148.00	-21.40
CAediting_39738	chr1_32367940_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6740-3p	32367935	32367941	7mer-m8	32367934	32367954	155.00	-16.81
CAediting_39738	chr1_32367940_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6888-3p	32367938	32367945	8mer-1a	32367938	32367958	148.00	-16.19
CAediting_39728	chr1_32367045_-	ENSG00000160058.17	ENST00000341071	hsa-miR-10396a-3p	32367041	32367047	7mer-m8	32367040	32367062	150.00	-35.29
CAediting_39728	chr1_32367045_-	ENSG00000160058.17	ENST00000341071	hsa-miR-10396b-3p	32367041	32367047	7mer-m8	32367040	32367063	155.00	-35.42
CAediting_39728	chr1_32367045_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4442	32367044	32367050	7mer-m8	32367043	32367059	155.00	-19.11
CAediting_39728	chr1_32367045_-	ENSG00000160058.17	ENST00000341071	hsa-miR-5587-3p	32367042	32367047	6mer	32367041	32367062	142.00	-27.63
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-130a-3p	32367060	32367066	7mer-m8	32367059	32367076	151.00	-24.72
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-130b-3p	32367060	32367066	7mer-m8	32367059	32367076	151.00	-24.72
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-148a-3p	32367059	32367065	7mer-m8	32367058	32367079	146.00	-13.32
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-148b-3p	32367059	32367065	7mer-m8	32367058	32367082	149.00	-15.19
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-152-3p	32367059	32367065	7mer-m8	32367058	32367081	141.00	-14.76
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-301a-3p	32367060	32367066	7mer-m8	32367059	32367079	149.00	-15.48
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-301b-3p	32367060	32367066	7mer-m8	32367059	32367079	149.00	-15.73
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-3666	32367060	32367066	7mer-m8	32367059	32367079	140.00	-16.61
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4295	32367060	32367066	7mer-m8	32367059	32367076	145.00	-13.76
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-454-3p	32367060	32367066	7mer-m8	32367059	32367081	145.00	-17.55
CAediting_39733	chr1_32367083_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4264	32367081	32367087	7mer-m8	32367080	32367098	146.00	-15.22
CAediting_39734	chr1_32367923_-	ENSG00000160058.17	ENST00000341071	hsa-miR-210-5p	32367918	32367925	8mer-1a	32367918	32367939	149.00	-25.05
CAediting_39740	chr1_32367943_-	ENSG00000160058.17	ENST00000341071	hsa-miR-3152-5p	32367939	32367946	8mer-1a	32367939	32367961	143.00	-14.30
CAediting_39740	chr1_32367943_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6836-3p	32367940	32367947	8mer-1a	32367940	32367959	145.00	-21.15
CAediting_39741	chr1_32367945_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4646-3p	32367939	32367946	8mer-1a	32367939	32367959	141.00	-13.66
CAediting_39741	chr1_32367945_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6814-5p	32367945	32367951	7mer-m8	32367944	32367965	153.00	-21.06
CAediting_39745	chr1_32367971_-	ENSG00000160058.17	ENST00000341071	hsa-miR-3189-5p	32367968	32367974	7mer-m8	32367967	32367991	145.00	-20.47
CAediting_39745	chr1_32367971_-	ENSG00000160058.17	ENST00000341071	hsa-miR-874-5p	32367967	32367973	7mer-m8	32367966	32367988	153.00	-21.27
CAediting_39746	chr1_32367978_-	ENSG00000160058.17	ENST00000341071	hsa-miR-3131	32367978	32367984	7mer-m8	32367977	32368003	147.00	-23.23
CAediting_39746	chr1_32367978_-	ENSG00000160058.17	ENST00000341071	hsa-miR-611	32367978	32367984	7mer-m8	32367977	32368004	158.00	-29.15

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_39746	chr1_32367978_-	ENSG00000160058.17	ENST00000341071	hsa-miR-1224-5p	32367978	32367984	7mer-m8	32367977	32368001	148	-24.19
CAediting_39729	chr1_32367062_-	ENSG00000160058.17	ENST00000341071	hsa-miR-199a-5p	32367058	32367064	7mer-m8	32367057	32367081	143	-14.05
CAediting_39729	chr1_32367062_-	ENSG00000160058.17	ENST00000341071	hsa-miR-199a-5p	32367058	32367064	7mer-m8	32367057	32367081	143	-14.05
CAediting_39729	chr1_32367062_-	ENSG00000160058.17	ENST00000341071	hsa-miR-199b-5p	32367058	32367064	7mer-m8	32367057	32367079	140	-10.68
CAediting_39727	chr1_32367039_-	ENSG00000160058.17	ENST00000341071	hsa-miR-328-3p	32367038	32367045	8mer-1a	32367038	32367059	140	-12.23
CAediting_39735	chr1_32367933_-	ENSG00000160058.17	ENST00000341071	hsa-miR-3663-5p	32367932	32367938	7mer-m8	32367931	32367948	142	-19.49
CAediting_39729	chr1_32367062_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4280	32367060	32367065	6mer	32367059	32367079	142	-14.48
CAediting_39730	chr1_32367064_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4280	32367060	32367065	6mer	32367059	32367079	142	-14.48
CAediting_39728	chr1_32367045_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4308	32367042	32367048	7mer-m8	32367041	32367058	140	-13.82
CAediting_39728	chr1_32367045_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4520-3p	32367045	32367050	6mer	32367044	32367064	141	-20.06
CAediting_39728	chr1_32367045_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4638-3p	32367044	32367050	7mer-m8	32367043	32367064	146	-25.37
CAediting_39744	chr1_32367964_-	ENSG00000160058.17	ENST00000341071	hsa-miR-510-5p	32367961	32367968	8mer-1a	32367961	32367982	140	-20.87
CAediting_39740	chr1_32367943_-	ENSG00000160058.17	ENST00000341071	hsa-miR-515-5p	32367943	32367949	7mer-m8	32367942	32367969	147	-16.55
CAediting_39741	chr1_32367945_-	ENSG00000160058.17	ENST00000341071	hsa-miR-515-5p	32367943	32367949	7mer-m8	32367942	32367969	147	-16.55
CAediting_39740	chr1_32367943_-	ENSG00000160058.17	ENST00000341071	hsa-miR-515-5p	32367943	32367949	7mer-m8	32367942	32367969	147	-16.55
CAediting_39741	chr1_32367945_-	ENSG00000160058.17	ENST00000341071	hsa-miR-515-5p	32367943	32367949	7mer-m8	32367942	32367969	147	-16.55
CAediting_39740	chr1_32367943_-	ENSG00000160058.17	ENST00000341071	hsa-miR-519e-5p	32367943	32367949	7mer-m8	32367942	32367967	143	-12.09
CAediting_39741	chr1_32367945_-	ENSG00000160058.17	ENST00000341071	hsa-miR-519e-5p	32367943	32367949	7mer-m8	32367942	32367967	143	-12.09
CAediting_39746	chr1_32367978_-	ENSG00000160058.17	ENST00000341071	hsa-miR-544b	32367976	32367982	7mer-m8	32367975	32367995	149	-18.34
CAediting_39741	chr1_32367945_-	ENSG00000160058.17	ENST00000341071	hsa-miR-5695	32367943	32367950	8mer-1a	32367943	32367967	152	-14.02
CAediting_39735	chr1_32367933_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6757-3p	32367929	32367935	7mer-m8	32367928	32367950	154	-17.89
CAediting_39728	chr1_32367045_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6775-3p	32367039	32367046	8mer-1a	32367039	32367059	141	-14.76

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000160058.17	ENST00000444377	hsa-miR-200b-3p	32365126	32365133	8mer-1a	32365126	32365149	143	-18.41
CAediting_1306324	chr19_13836464_-	ENSG00000160058.17	ENST00000373520	hsa-miR-27a-3p	32383888	32383894	7mer-m8	32383887	32383906	147	-13.14
CAediting_1399425	chr20_1392958_-	ENSG00000160058.17	ENST00000444377	hsa-miR-6869-5p	32365801	32365807	7mer-m8	32365800	32365822	146	-23.78
CAediting_228905	chr2_188297554_+	ENSG00000160058.17	ENST00000444377	hsa-miR-561-3p	32365648	32365654	7mer-m8	32365647	32365669	153	-13.59
CAediting_228905	chr2_188297554_+	ENSG00000160058.17	ENST00000444377	hsa-miR-561-3p	32366415	32366421	7mer-m8	32366414	32366435	142	-14.63
CAediting_524911	chr7_5495852_-	ENSG00000160058.17	ENST00000444377	hsa-miR-589-3p	32365503	32365509	7mer-m8	32365502	32365527	141	-20.92
CAediting_1229414	chr17_67471546_+	ENSG00000160058.17	ENST00000341071	hsa-miR-548aa	32367054	32367060	7mer-m8	32367053	32367080	141	-11.18
CAediting_1229415	chr17_67471547_+	ENSG00000160058.17	ENST00000341071	hsa-miR-548aa	32367338	32367344	7mer-m8	32367337	32367362	159	-18.9
CAediting_1160181	chr17_7017644_-	ENSG00000160058.17	ENST00000341071	hsa-miR-195-3p	32368284	32368290	7mer-m8	32368283	32368303	152	-19.89
CAediting_1399425	chr20_1392958_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6869-5p	32365801	32365807	7mer-m8	32365800	32365822	146	-23.78
CAediting_228905	chr2_188297554_+	ENSG00000160058.17	ENST00000341071	hsa-miR-561-3p	32366415	32366421	7mer-m8	32366414	32366435	142	-14.63
CAediting_228905	chr2_188297554_+	ENSG00000160058.17	ENST00000341071	hsa-miR-561-3p	32365648	32365654	7mer-m8	32365647	32365669	153	-13.59
CAediting_524911	chr7_5495852_-	ENSG00000160058.17	ENST00000341071	hsa-miR-589-3p	32366737	32366742	6mer	32366731	32366753	140	-25.61
CAediting_524911	chr7_5495852_-	ENSG00000160058.17	ENST00000341071	hsa-miR-589-3p	32365503	32365509	7mer-m8	32365502	32365527	141	-20.92
CAediting_228905	chr2_188297554_+	ENSG00000160058.17	ENST00000526031	hsa-miR-561-3p	32366415	32366421	7mer-m8	32366414	32366435	142	-14.63
CAediting_228905	chr2_188297554_+	ENSG00000160058.17	ENST00000419121	hsa-miR-561-3p	32366415	32366421	7mer-m8	32366414	32366435	142	-14.63
CAediting_1229415	chr17_67471547_+	ENSG00000160058.17	ENST00000373520	hsa-miR-548aa	32378810	32378816	7mer-m8	32378809	32378838	147	-11.15
CAediting_1399425	chr20_1392958_-	ENSG00000160058.17	ENST00000373520	hsa-miR-6869-5p	32376510	32376517	8mer-1a	32376510	32376530	149	-20.32
CAediting_442554	chr5_154685830_+	ENSG00000160058.17	ENST00000373520	hsa-miR-1303	32376708	32376715	8mer-1a	32376708	32376730	149	-21.06
CAediting_573001	chr7_92204086_-	ENSG00000160058.17	ENST00000373520	hsa-miR-1285-5p	32376441	32376447	7mer-m8	32376440	32376460	147	-21.74
CAediting_1160181	chr17_7017644_-	ENSG00000160058.17	ENST00000373520	hsa-miR-195-3p	32368284	32368290	7mer-m8	32368283	32368303	152	-19.89
CAediting_442554	chr5_154685830_+	ENSG00000160058.17	ENST00000527513	hsa-miR-1303	32376708	32376715	8mer-1a	32376708	32376730	149	-21.06
CAediting_468389	chr6_31355314_-	ENSG00000160058.17	ENST00000444377	hsa-miR-6891-5p	32366363	32366370	8mer-1a	32366363	32366381	141	-21.97
CAediting_468389	chr6_31355314_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6891-5p	32366363	32366370	8mer-1a	32366363	32366381	141	-21.97
CAediting_468389	chr6_31355314_-	ENSG00000160058.17	ENST00000526031	hsa-miR-6891-5p	32366363	32366370	8mer-1a	32366363	32366381	141	-21.97
CAediting_468389	chr6_31355314_-	ENSG00000160058.17	ENST00000419121	hsa-miR-6891-5p	32366363	32366370	8mer-1a	32366363	32366381	141	-21.97

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000160058.17	ENST00000444377	hsa-miR-1303	32366432	32366439	8mer-1a	32366432	32366451	145	-14.81
CAediting_748296	chr10_51299626_+	ENSG00000160058.17	ENST00000444377	hsa-miR-605-3p	32365961	32365967	7mer-m8	32365960	32365981	140	-12.94
CAediting_980496	chr14_31014685_-	ENSG00000160058.17	ENST00000444377	hsa-miR-624-3p	32365816	32365822	7mer-m8	32365815	32365835	151	-13.31
CAediting_442554	chr5_154685830_+	ENSG00000160058.17	ENST00000341071	hsa-miR-1303	32366432	32366439	8mer-1a	32366432	32366451	145	-14.81
CAediting_688080	chr9_63819626_+	ENSG00000160058.17	ENST00000341071	hsa-miR-4477b	32366957	32366964	8mer-1a	32366957	32366979	150	-14.12
CAediting_688080	chr9_63819626_+	ENSG00000160058.17	ENST00000341071	hsa-miR-4477b	32366804	32366810	7mer-m8	32366803	32366823	153	-14.45
CAediting_1054808	chr15_66496985_-	ENSG00000160058.17	ENST00000341071	hsa-miR-4512	32365845	32365851	7mer-m8	32365844	32365864	154	-22.89
CAediting_748296	chr10_51299626_+	ENSG00000160058.17	ENST00000341071	hsa-miR-605-3p	32365961	32365967	7mer-m8	32365960	32365981	140	-12.94
CAediting_980496	chr14_31014685_-	ENSG00000160058.17	ENST00000341071	hsa-miR-624-3p	32366914	32366920	7mer-m8	32366913	32366933	150	-21.37
CAediting_980496	chr14_31014685_-	ENSG00000160058.17	ENST00000341071	hsa-miR-624-3p	32365816	32365822	7mer-m8	32365815	32365835	151	-13.31
CAediting_1399425	chr20_1392958_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6869-5p	32367427	32367433	7mer-m8	32367426	32367447	140	-12.39
CAediting_468389	chr6_31355314_-	ENSG00000160058.17	ENST00000341071	hsa-miR-6891-5p	32367474	32367480	7mer-m8	32367473	32367491	140	-12.43
CAediting_846604	chr11_93733708_-	ENSG00000160058.17	ENST00000373520	hsa-miR-1304-3p	32368528	32368534	7mer-m8	32368527	32368548	142	-17.2

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for BSDC1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000341071.10	protein_coding
ENST00000444377.4	nonsense_mediated_decay

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_39726	ENST00000341071.10	chr1_32367027_-	-1795.10	-1795.80	-1797.30
CAediting_39727	ENST00000341071.10	chr1_32367039_-	-1795.50	-1795.80	-1797.30
CAediting_39728	ENST00000341071.10	chr1_32367045_-	-1795.00	-1795.80	-1797.30
CAediting_39729	ENST00000341071.10	chr1_32367062_-	-1795.40	-1795.80	-1797.30
CAediting_39730	ENST00000341071.10	chr1_32367064_-	-1794.80	-1795.80	-1797.30
CAediting_39731	ENST00000341071.10	chr1_32367079_-	-1796.20	-1795.80	-1797.30
CAediting_39732	ENST00000341071.10	chr1_32367082_-	-1795.90	-1795.80	-1797.30
CAediting_39733	ENST00000341071.10	chr1_32367083_-	-1796.30	-1795.80	-1797.30
CAediting_39734	ENST00000341071.10	chr1_32367923_-	-1795.80	-1795.80	-1797.30
CAediting_39735	ENST00000341071.10	chr1_32367933_-	-1795.10	-1795.80	-1797.30
CAediting_39736	ENST00000341071.10	chr1_32367938_-	-1795.50	-1795.80	-1797.30
CAediting_39737	ENST00000341071.10	chr1_32367939_-	-1795.90	-1795.80	-1797.30
CAediting_39738	ENST00000341071.10	chr1_32367940_-	-1795.90	-1795.80	-1797.30
CAediting_39739	ENST00000341071.10	chr1_32367941_-	-1795.50	-1795.80	-1797.30
CAediting_39740	ENST00000341071.10	chr1_32367943_-	-1796.10	-1795.80	-1797.30
CAediting_39741	ENST00000341071.10	chr1_32367945_-	-1794.90	-1795.80	-1797.30
CAediting_39742	ENST00000341071.10	chr1_32367957_-	-1795.80	-1795.80	-1797.30
CAediting_39743	ENST00000341071.10	chr1_32367959_-	-1796.10	-1795.80	-1797.30
CAediting_39744	ENST00000341071.10	chr1_32367964_-	-1794.90	-1795.80	-1797.30
CAediting_39745	ENST00000341071.10	chr1_32367971_-	-1795.80	-1795.80	-1797.30
CAediting_39746	ENST00000341071.10	chr1_32367978_-	-1795.10	-1795.80	-1797.30
CAediting_39762	ENST00000444377.4	chr1_32369334_-	-1104.20	-1104.20	-1104.20

Top

Relation with ADAR for BSDC1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_39736	chr1_32367938_-	0.0016281565152271	0.230095762973821	.	.	.	.
STAD	CAediting_39736	chr1_32367938_-	8.23510338961657e-06	0.291746470345496	0.0412362258558294	0.135898114460789	.	.
ESCA	CAediting_39736	chr1_32367938_-	0.0196358865690512	0.213666255944423	.	.	.	.
LAML	CAediting_39736	chr1_32367938_-	0.00590864823924047	0.240211645924871	.	.	.	.
BRCA	CAediting_39737	chr1_32367939_-	1.57466779802235e-05	0.352520121398329	.	.	.	.
LUAD	CAediting_39737	chr1_32367939_-	0.0382902189220007	0.27278756783202	.	.	.	.
STAD	CAediting_39737	chr1_32367939_-	0.00519588169262847	0.225606972290599	.	.	.	.
ESCA	CAediting_39737	chr1_32367939_-	.	.	0.00346835643670288	0.313631717467447	0.000919331952110587	0.353044272040981
LAML	CAediting_39737	chr1_32367939_-	0.00137495182110812	0.305499695470061	.	.	.	.
BRCA	CAediting_39738	chr1_32367940_-	1.64612262672173e-14	0.502419539789486	.	.	.	.
LUAD	CAediting_39738	chr1_32367940_-	0.00347122121610171	0.30663023892297	.	.	.	.
STAD	CAediting_39738	chr1_32367940_-	1.45664141964494e-07	0.352387732855435	.	.	.	.
KIRC	CAediting_39738	chr1_32367940_-	0.0222516841577812	0.219834467044526	.	.	.	.
ESCA	CAediting_39738	chr1_32367940_-	0.000118127683922519	0.33888259266185	0.00595529371536908	0.245669384848656	.	.
LAML	CAediting_39738	chr1_32367940_-	0.00445874591484183	0.248848265808656	.	.	.	.

Top

Relation with cancer stages for BSDC1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for BSDC1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
ESCA	CAediting_39737	chr1_32367939_-	9.5905703245136e-05	0.00315477	0.000807022

Top

RelatedDrugs for BSDC1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for BSDC1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene