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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: PPP1R7 (CAeditome ID:5510) |
Gene summary for PPP1R7 |
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Gene information | Gene symbol | PPP1R7 | Gene ID | 5510 |
Gene name | protein phosphatase 1 regulatory subunit 7 | |
Synonyms | SDS22 | |
Cytomap | 2q37.3 | |
Type of gene | protein-coding | |
Description | protein phosphatase 1 regulatory subunit 7protein phosphatase 1 regulatory subunit 22protein phosphatase 1, regulatory (inhibitor) subunit 7testis secretory sperm-binding protein Li 210a | |
Modification date | 20210529 | |
UniProtAcc | Q15435 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
PPP1R7 | GO:0005694 | Protein phosphatase 1 regulatory subunit 7 | 22801782 |
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RNA A-to-I events for PPP1R7 |
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CAediting_251973(241154584, +), CAediting_251974(241154598, +), CAediting_251975(241173151, +), CAediting_251976(241173254, +), CAediting_251977(241173256, +), CAediting_251978(241173338, +), CAediting_251979(241173343, +), CAediting_251980(241173347, +), CAediting_251981(241173361, +), CAediting_251982(241173371, +), CAediting_251983(241173401, +), |
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RNA editing positional annotations for PPP1R7 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_251973 | chr2_241154584_+ | ncRNA_intronic |
CAediting_251974 | chr2_241154598_+ | ncRNA_intronic |
CAediting_251975 | chr2_241173151_+ | ncRNA_intronic |
CAediting_251976 | chr2_241173254_+ | ncRNA_intronic |
CAediting_251977 | chr2_241173256_+ | ncRNA_intronic |
CAediting_251978 | chr2_241173338_+ | ncRNA_intronic |
CAediting_251979 | chr2_241173343_+ | ncRNA_intronic |
CAediting_251980 | chr2_241173347_+ | ncRNA_intronic |
CAediting_251981 | chr2_241173361_+ | ncRNA_intronic |
CAediting_251982 | chr2_241173371_+ | ncRNA_intronic |
CAediting_251983 | chr2_241173401_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_251973 | chr2_241154584_+ | SINE | Alu | AluSz |
CAediting_251974 | chr2_241154598_+ | SINE | Alu | AluSz |
CAediting_251975 | chr2_241173151_+ | SINE | Alu | AluSz |
CAediting_251976 | chr2_241173254_+ | SINE | Alu | AluSz |
CAediting_251977 | chr2_241173256_+ | SINE | Alu | AluSz |
CAediting_251978 | chr2_241173338_+ | SINE | Alu | AluJo |
CAediting_251979 | chr2_241173343_+ | SINE | Alu | AluJo |
CAediting_251980 | chr2_241173347_+ | SINE | Alu | AluJo |
CAediting_251981 | chr2_241173361_+ | SINE | Alu | AluJo |
CAediting_251982 | chr2_241173371_+ | SINE | Alu | AluJo |
CAediting_251983 | chr2_241173401_+ | SINE | Alu | AluJo |
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RNA A-to-I editing events in the alternative splicing sites for PPP1R7 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PPP1R7 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for PPP1R7 |
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The effects of the RNA editing to the miRNA binding sites for PPP1R7 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1368054 | chr19_46709310_- | ENSG00000115685.13 | ENST00000402734 | hsa-miR-320e | 241167110 | 241167117 | 8mer-1a | 241167095 | 241167117 | 143 | -22.47 |
CAediting_524911 | chr7_5495852_- | ENSG00000115685.13 | ENST00000402734 | hsa-miR-589-3p | 241167121 | 241167127 | 7mer-m8 | 241167105 | 241167128 | 140 | -13.68 |
CAediting_117844 | chr1_162342605_+ | ENSG00000115685.13 | ENST00000407025 | hsa-miR-556-3p | 241182937 | 241182944 | 8mer-1a | 241182923 | 241182944 | 159 | -11.74 |
CAediting_117844 | chr1_162342605_+ | ENSG00000115685.13 | ENST00000272983 | hsa-miR-556-3p | 241182937 | 241182944 | 8mer-1a | 241182923 | 241182944 | 159 | -11.74 |
CAediting_1368054 | chr19_46709310_- | ENSG00000115685.13 | ENST00000404405 | hsa-miR-320e | 241167110 | 241167117 | 8mer-1a | 241167095 | 241167117 | 143 | -22.47 |
CAediting_524911 | chr7_5495852_- | ENSG00000115685.13 | ENST00000404405 | hsa-miR-589-3p | 241167121 | 241167127 | 7mer-m8 | 241167105 | 241167128 | 140 | -13.68 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000115685.13 | ENST00000234038 | hsa-miR-548aa | 241183617 | 241183623 | 7mer-m8 | 241183600 | 241183624 | 160 | -12.87 |
CAediting_117844 | chr1_162342605_+ | ENSG00000115685.13 | ENST00000234038 | hsa-miR-556-3p | 241182937 | 241182944 | 8mer-1a | 241182923 | 241182944 | 159 | -11.74 |
CAediting_228905 | chr2_188297554_+ | ENSG00000115685.13 | ENST00000234038 | hsa-miR-561-3p | 241183566 | 241183571 | 6mer | 241183552 | 241183572 | 162 | -23.93 |
CAediting_442554 | chr5_154685830_+ | ENSG00000115685.13 | ENST00000234038 | hsa-miR-1303 | 241183539 | 241183546 | 8mer-1a | 241183527 | 241183546 | 144 | -15.57 |
CAediting_1368054 | chr19_46709310_- | ENSG00000115685.13 | ENST00000406106 | hsa-miR-320e | 241167110 | 241167117 | 8mer-1a | 241167095 | 241167117 | 143 | -22.47 |
CAediting_524911 | chr7_5495852_- | ENSG00000115685.13 | ENST00000406106 | hsa-miR-589-3p | 241167121 | 241167127 | 7mer-m8 | 241167105 | 241167128 | 140 | -13.68 |
CAediting_1368054 | chr19_46709310_- | ENSG00000115685.13 | ENST00000401987 | hsa-miR-320e | 241167110 | 241167117 | 8mer-1a | 241167095 | 241167117 | 143 | -22.47 |
CAediting_524911 | chr7_5495852_- | ENSG00000115685.13 | ENST00000401987 | hsa-miR-589-3p | 241167121 | 241167127 | 7mer-m8 | 241167105 | 241167128 | 140 | -13.68 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000115685.13 | ENST00000415769 | hsa-miR-548aa | 241183617 | 241183623 | 7mer-m8 | 241183600 | 241183624 | 160 | -12.87 |
CAediting_228905 | chr2_188297554_+ | ENSG00000115685.13 | ENST00000415769 | hsa-miR-561-3p | 241183566 | 241183571 | 6mer | 241183552 | 241183572 | 162 | -23.93 |
CAediting_442554 | chr5_154685830_+ | ENSG00000115685.13 | ENST00000415769 | hsa-miR-1303 | 241183539 | 241183546 | 8mer-1a | 241183527 | 241183546 | 144 | -15.57 |
CAediting_468389 | chr6_31355314_- | ENSG00000115685.13 | ENST00000402734 | hsa-miR-6891-5p | 241167095 | 241167102 | 8mer-1a | 241167084 | 241167102 | 147 | -28.88 |
CAediting_468389 | chr6_31355314_- | ENSG00000115685.13 | ENST00000407025 | hsa-miR-6891-5p | 241182851 | 241182856 | 6mer | 241182839 | 241182857 | 147 | -26.7 |
CAediting_468389 | chr6_31355314_- | ENSG00000115685.13 | ENST00000272983 | hsa-miR-6891-5p | 241182851 | 241182856 | 6mer | 241182839 | 241182857 | 147 | -26.7 |
CAediting_468389 | chr6_31355314_- | ENSG00000115685.13 | ENST00000404405 | hsa-miR-6891-5p | 241167095 | 241167102 | 8mer-1a | 241167084 | 241167102 | 147 | -28.88 |
CAediting_468389 | chr6_31355314_- | ENSG00000115685.13 | ENST00000234038 | hsa-miR-6891-5p | 241182851 | 241182856 | 6mer | 241182839 | 241182857 | 147 | -26.7 |
CAediting_468389 | chr6_31355314_- | ENSG00000115685.13 | ENST00000406106 | hsa-miR-6891-5p | 241167095 | 241167102 | 8mer-1a | 241167084 | 241167102 | 147 | -28.88 |
CAediting_468389 | chr6_31355314_- | ENSG00000115685.13 | ENST00000401987 | hsa-miR-6891-5p | 241167095 | 241167102 | 8mer-1a | 241167084 | 241167102 | 147 | -28.88 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_468389 | chr6_31355314_- | ENSG00000115685.13 | ENST00000234038 | hsa-miR-6891-5p | 241183382 | 241183387 | 6mer | 241183370 | 241183388 | 141 | -19.96 |
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The effects of the RNA editing to the stability of the RNA structures for PPP1R7 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for PPP1R7 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
STAD | CAediting_251979 | chr2_241173343_+ | 0.00685520804829027 | 0.28310685859989 | . | . | . | . |
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Relation with cancer stages for PPP1R7 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for PPP1R7 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for PPP1R7 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PPP1R7 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |